id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 743 hbonds intramol f gives traceback Elaine Meng Eric Pettersen "Example: open 1zik hb intramol f hbonds intraMol false Traceback (most recent call last): File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py"", line 178, in execute cmd.run(cmd_text) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py"", line 2366, in run result = ci.function(session, **kw_args) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/hbonds/cmd.py"", line 70, in cmd_hbonds for m in s.molecules: File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/molobject.py"", line 1579, in molecules return tuple(Atoms(ra) for aa in atom_arrays) File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/molobject.py"", line 1579, in return tuple(Atoms(ra) for aa in atom_arrays) NameError: name 'ra' is not defined NameError: name 'ra' is not defined File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/molobject.py"", line 1579, in return tuple(Atoms(ra) for aa in atom_arrays) See log for complete Python traceback. If you wish to report this error, send mail to chimerax-bugs@cgl.ucsf.edu and describe what you were doing and include a copy of the contents of the log." defect closed major Structure Analysis fixed all ChimeraX