id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
759	matchmaker broken (couldn't find alignment module)	Elaine Meng	Conrad Huang	"I don't think it matters what data, but here's an example:

open 2mnr
open 4enl
matchmaker #2 to #1

Traceback (most recent call last):
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/cmd_line/tool.py"", line 178, in execute
cmd.run(cmd_text)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py"", line 2411, in run
_used_aliases=used_aliases, log=log))
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py"", line 2896, in __call__
return self.cmd.run(text, _used_aliases=_used_aliases, log=log)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/commands/cli.py"", line 2390, in run
result = ci.function(session, **kw_args)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/match_maker/match.py"", line 624, in cmd_match
gap_open_other=ogap, compute_ss=compute_ss, verbose=verbose)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/match_maker/match.py"", line 307, in match
matrix, alg, gap_open, gap_extend, dssp_cache, **align_kw)
File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/match_maker/match.py"", line 60, in align
from chimerax.seqalign.align_algs import NeedlemanWunsch
ModuleNotFoundError: No module named 'chimerax.seqalign.align_algs'

ModuleNotFoundError: No module named 'chimerax.seqalign.align_algs'

File ""/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/match_maker/match.py"", line 60, in align
from chimerax.seqalign.align_algs import NeedlemanWunsch

"	defect	closed	major		Sequence		fixed						all	ChimeraX