Opened 3 years ago

Last modified 3 years ago

#7722 closed defect

Maps in sessions with invalid cell angles — at Version 2

Reported by: mpm896@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Sessions Version:
Keywords: Cc: gregdp@…
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by Eric Pettersen) 

The following bug report has been submitted:
Platform:        Linux-4.4.0-201-generic-x86_64-with-glibc2.23
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
I saved this chimeraX session that had the following models:
	3 subtomogram  average MRC files
	2 subtomogram average MRC files with part of the map erased
	2 segmentation files

When I open the session, I get this error along with the following in the log:
"/pathToFile/run1.mrc: invalid cell angles 0,0,0 must be between 0 and 180.
/PathToFile/run1_top.mrc: invalid cell angles 0,0,0 must be between 0 and 180.
/PathToFile/run1_bot.mrc: invalid cell angles 0,0,0 must be between 0 and 180."

I'm able to open the above three files, so I'm not to sure where the problem lies. Any help is greatly appreciated!

Best,
Matt

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/ActinModels/Movie/sm2019-09-08-3_tomo8_forVideo.cxs
> format session

Opened temp_chimera_table.em as #1.1, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.2, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.3, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.4, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.5, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.6, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.7, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.8, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.9, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.10, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.11, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.12, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.13, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.14, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.15, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.16, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.17, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.18, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.19, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.20, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.21, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.22, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.23, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.24, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.25, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.26, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.27, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.28, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.29, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.30, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.31, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.32, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.33, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.34, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.35, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.36, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.37, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.38, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.39, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.40, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.41, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.1, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.2, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.3, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.4, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.5, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.6, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.7, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.8, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.9, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.10, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.11, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.12, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.13, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.14, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.15, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.16, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.17, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.18, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.19, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.20, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.21, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.22, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.23, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.24, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.25, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.26, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.27, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.28, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.29, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.30, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.31, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.32, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.33, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.34, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.35, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.36, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.37, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.38, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.39, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.40, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.41, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened TS12_bin4_SL10_noGold.rec as #4, grid size 1023,1440,600, pixel 1,
shown at step 1, values int8  
Log from Mon Oct 3 09:55:33 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/ActinModels/sm2019-09-08-3_tomo8.cxs

Opened temp_chimera_table.em as #1.1, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.2, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.3, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.4, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.5, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.6, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.7, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.8, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.9, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.10, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.11, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.12, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.13, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.14, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.15, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.16, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.17, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.18, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.19, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.20, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.21, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.22, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.23, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.24, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.25, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.26, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.27, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.28, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.29, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.30, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.31, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.32, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.33, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.34, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.35, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.36, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.37, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.38, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.39, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.40, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.41, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.1, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.2, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.3, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.4, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.5, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.6, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.7, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.8, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.9, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.10, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.11, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.12, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.13, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.14, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.15, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.16, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.17, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.18, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.19, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.20, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.21, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.22, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.23, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.24, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.25, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.26, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.27, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.28, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.29, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.30, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.31, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.32, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.33, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.34, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.35, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.36, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.37, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.38, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.39, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.40, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.41, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Log from Fri Jul 29 15:23:28 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/ActinModels/sm2019-09-08-3_tomo8.cxs

Opened temp_chimera_table.em as #1.1, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.2, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.3, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.4, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.5, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.6, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.7, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.8, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.9, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.10, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.11, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.12, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.13, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.14, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.15, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.16, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.17, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.18, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.19, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.20, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.21, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.22, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.23, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.24, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.25, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.26, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.27, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.28, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.29, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.30, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.31, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.32, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.33, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.34, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.35, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.36, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.37, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.38, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.39, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.40, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.41, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.1, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.2, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.3, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.4, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.5, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.6, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.7, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.8, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.9, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.10, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.11, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.12, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.13, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.14, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.15, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.16, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.17, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.18, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.19, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.20, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.21, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.22, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.23, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.24, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.25, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.26, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.27, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.28, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.29, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.30, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.31, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.32, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.33, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.34, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.35, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.36, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.37, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.38, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.39, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.40, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.41, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Log from Wed Jul 27 11:32:38 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/ActinModels/sm2019-09-08-3_tomo8.cxs

Opened temp_chimera_table.em as #1.1, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.2, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.3, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.4, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.5, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.6, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.7, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.8, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.9, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.10, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.11, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.12, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.13, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.14, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.15, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.16, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.17, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.18, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.19, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.20, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.21, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.22, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.23, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.24, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.25, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.26, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.27, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.28, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.29, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.30, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.31, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.32, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.33, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.34, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.35, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.36, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.37, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.38, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.39, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.40, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #1.41, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.1, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.2, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.3, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.4, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.5, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.6, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.7, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.8, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.9, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.10, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.11, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.12, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.13, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.14, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.15, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.16, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.17, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.18, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.19, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.20, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.21, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.22, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.23, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.24, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.25, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.26, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.27, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.28, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.29, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.30, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.31, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.32, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.33, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.34, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.35, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.36, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.37, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.38, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.39, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.40, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Opened temp_chimera_table.em as #2.41, grid size 90,90,90, pixel 1, shown at
level 6, step 1, values float32  
Log from Wed Jul 27 11:13:09 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open run1_topHalf_Chimera/tomo_1_ChimeraX.cxc

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/temp_chimera_table.em

Opened temp_chimera_table.em as #1.1, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.2, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.3, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.4, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.5, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.6, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.7, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.8, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.9, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.10, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.11, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.12, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.13, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.14, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.15, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.16, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.17, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.18, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.19, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.20, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.21, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.22, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.23, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.24, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.25, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.26, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.27, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.28, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.29, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.30, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.31, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.32, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.33, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.34, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.35, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.36, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.37, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.38, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.39, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.40, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  
Opened temp_chimera_table.em as #1.41, grid size 90,90,90, pixel 1, shown at
level 3.84, step 1, values float32  

> volume #1.* level 6

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_topHalf_Chimera/tomo_1.positions
> models #1.*.* childModels true

Set 41 positions  

> view orient

> color #* #30A6AD

> set bgColor white

executed tomo_1_ChimeraX.cxc  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/tomo_1_ChimeraX.cxc

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/run1_botHalf_Chimera/temp_chimera_table.em

Opened temp_chimera_table.em as #2.1, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.2, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.3, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.4, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.5, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.6, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.7, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.8, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.9, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.10, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.11, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.12, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.13, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.14, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.15, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.16, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.17, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.18, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.19, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.20, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.21, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.22, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.23, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.24, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.25, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.26, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.27, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.28, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.29, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.30, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.31, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.32, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.33, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.34, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.35, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  
Opened temp_chimera_table.em as #2.36, grid size 90,90,90, pixel 1, shown at
level 1.46, step 1, values float32  

[had to delete a bunch of the log to fit within ticket limits]

> move x 60

> hide #1 #2 #3

> show #4

> volume #4 planes z,280,60,3

> wait 100

> volume #4 planes z,60,280,3

> wait 100

> show #1 #2 #3

> volume #4 planes z,280,60,3

> wait 100

> hide #4

> turn y 2 270

> wait 290

> fly 40 start p1

> wait 80

> wobble y 45 360 cycle 180

> wait 360

> fly 40 p1 p2

> wait 80

> wobble y 45 360 cycle 180

> view name p3

> view p2

> turn y 2 180

> fly 180 p2 p3

> view p2

> turn y 2 180

> view name p4

> view p2

> fly 40 p2 p4

> turn y 2 180

[Repeated 1 time(s)]

> view name p4

> view p2

> fly 40 p2 p4

> wait 40

> turn y 2 180

> view p2

> fly 40 p2 p4

> wait 35

> turn y 2 180

> fly 40 p2 p4

> wait 39

> turn y 2 180

> fly 40 p2 p4

> wait 40

> turn y 2 90

> wait 90

> fly 40 start p3

> fly 40 p2 p4

> wait 40

> turn y 2 90

> wait 90

> fly 40 start p3

> fly 40 p2 p4

> wait 40

> turn y 2 90

> wait 100

> fly 40 start p3

> fly 40 p2 p4

> wait 40

> turn y 2 90

> wait 100

> fly 80 start p3

> Fly 40 p2 p4; wait 40; turn y 2 90; wait 100; fly 80 start p3;

Unknown command: Fly 40 p2 p4; wait 40; turn y 2 90; wait 100; fly 80 start
p3;  

> show all

> view orient

> turn z 45

> turn y -15

> zoom 3

> move y -60

> move x 60

> hide #1 #2 #3

> show #4

> volume #4 planes z,280,60,3

> wait 100

> volume #4 planes z,60,280,3

> wait 100

> show #1 #2 #3

> volume #4 planes z,280,60,3

> wait 100

> hide #4

> turn y 2 270

> wait 290

> fly 40 start p1

> wait 80

> wobble y 45 360 cycle 180

> wait 360

> fly 40 p1 p2

> wait 80

> wobble y 45 360 cycle 180

> turn y 2 180

> fly 180 p2 p3

> fly 40 p2 p4

> wait 40

> turn y 2 90

> wait 100

> fly 80 start p3

> stop

> show all

> view orient

> turn z 45

> turn y -15

> zoom 3

> move y -60

> move x 60

> hide #1 #2 #3

> show #4

> volume #4 planes z,280,60,3

> wait 100

> volume #4 planes z,60,280,3

> wait 100

> show #1 #2 #3

> volume #4 planes z,280,60,3

> wait 100

> hide #4

> turn y 2 270

> wait 290

> fly 40 start p1

> wait 80

> wobble y 45 360 cycle 180

> wait 360

> fly 40 p1 p2

> wait 80

> wobble y 45 360 cycle 180

> wait 400

> turn y 2 180

> fly 180 p2 p3

> fly 40 p2 p4

> wait 40

> turn y 2 90

> wait 100

> fly 80 start p3

> VIEW P3

Unknown command: VIEW P3  

> view p3

[Repeated 1 time(s)]

> view p4

> fly 40 start p1

> wait 80

> wobble y 45 360 cycle 180

> wait 360

> fly 40 p1 p2

> wait 80

> wobble y 45 360 cycle 180

> wait 400

> turn y 2 180

> fly 180 p2 p3

> fly 40 start p1

> wait 80

> wobble y 45 360 cycle 180

> wait 360

> fly 40 p1 p2

> wait 80

> wobble y 45 360 cycle 180

> wait 400

> fly 40 p2 p4

> wait 40

> turn y 2 90

> wait 100

> fly 80 start p3

> show all

> view orient

> turn z 45

> turn y -15

> zoom 3

> move y -60

> move x 60

> hide #1 #2 #3

> show #4

> volume #4 planes z,280,60,3

> wait 100

> volume #4 planes z,60,280,3

> wait 100

> show #1 #2 #3

> volume #4 planes z,280,60,3

> wait 100

> hide #4

> turn y 2 270

> wait 290

> fly 40 start p1

> wait 80

> wobble y 45 360 cycle 180

> wait 360

> fly 40 p1 p2

> wait 80

> wobble y 45 360 cycle 180

> wait 400

> fly 40 p2 p4

> wait 40

> turn y 2 90

> wait 100

> fly 80 start p3

> view p2

> view p4 40

> view p2 p4 40

Expected an integer >= 1 or a keyword  

> view p2

> view p4 40

> view p3 40

> view p4

> fly 40 p4 p3

> view p4

> view p3 80

> show all

> view orient

> turn z 45

> turn y -15

> zoom 3

> move y -60

> move x 60

> hide #1 #2 #3

> show #4

> volume #4 planes z,280,60,3

> wait 100

> volume #4 planes z,60,280,3

> wait 100

> show #1 #2 #3

> volume #4 planes z,280,60,3

> wait 100

> hide #4

> turn y 2 270

> wait 290

> fly 40 start p1

> wait 80

> wobble y 45 360 cycle 180

> wait 360

> fly 40 p1 p2

> wait 80

> wobble y 45 360 cycle 180

> wait 400

> fly 40 p2 p4

> wait 80

> view p3 80

> view p2

> wobble y 30 360 cycle 180

> wait 400

> show all

> view orient

> turn z 45

> turn y -15

> zoom 3

> move y -60

> move x 60

> movie record

> hide #1 #2 #3

> show #4

> volume #4 planes z,280,60,3

> wait 100

> volume #4 planes z,60,280,3

> wait 100

> show #1 #2 #3

> volume #4 planes z,280,60,3

> wait 100

> hide #4

> turn y 2 270

> wait 290

> fly 40 start p1

> wait 80

> wobble y 45 360 cycle 180

> wait 360

> fly 40 p1 p2

> wait 80

> wobble y 30 360 cycle 180

> wait 400

> fly 40 p2 p4

> wait 80

> view p3 80

> movie encode
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/ActinModels/Movie/PCR_F-
> actin_Movie.mov

Movie saved to /ChangLab1-hd2/matt/.../Movie/PCR_F-actin_Movie.mov  
  

> save
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/ActinModels/Movie/sm2019-09-08-3_tomo8_forVideo.cxs

> turn y 2 270

> wait 290

> show all

> view orient

> turn z 45

> turn y -15

> zoom 3

> move y -60

> move x 60

> movie record

> hide #1 #2 #3

> show #4

> volume #4 planes z,280,60,3

> wait 100

> volume #4 planes z,60,280,3

> wait 100

> show #1 #2 #3

> volume #4 planes z,280,60,3

> wait 100

> hide #4

> turn y 3 180

> wait 200

> fly 40 start p1

> wait 80

> wobble y 45 270 cycle 135

> wait 360

> fly 40 p1 p2

> wait 80

> wobble y 30 360 cycle 180

> wait 400

> fly 40 p2 p4

> wait 80

> view p3 80

> wait 100

> movie encode
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/ActinModels/Movie/PCR_F-
> actin_Movie.mov

Movie saved to /ChangLab1-hd2/matt/.../Movie/PCR_F-actin_Movie.mov  
  

> show all

> view orient

> turn z 45

> turn y -15

> zoom 3

> move y -60

> move x 60

> movie record

> hide #1 #2 #3

> show #4

> volume #4 planes z,280,60,3

> wait 100

> volume #4 planes z,60,280,3

> wait 100

> show #1 #2 #3

> volume #4 planes z,280,60,3

> wait 100

> hide #4

> turn y 3 180

> wait 200

> fly 40 start p1

> wait 80

> wobble y 45 180 cycle 90

> wait 180

> fly 40 p1 p2

> wait 80

> wobble y 30 180 cycle 90

> wait 220

> fly 40 p2 p4

> wait 80

> view p3 80

> wait 100

> movie encode
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/ActinModels/Movie/PCR_F-
> actin_Movie.mov

Movie saved to /ChangLab1-hd2/matt/.../Movie/PCR_F-actin_Movie.mov  
  

> save
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/ActinModels/Movie/sm2019-09-08-3_tomo8_forVideo.cxs

——— End of log from Mon Oct 3 09:55:33 2022 ———

opened ChimeraX session  

> hide #!1 models

> hide #!2 models

> hide #3 models

> show #!4 models

> show #4.1 models

> volume #4 planes z

> volume #4 planes z depth 5

Expected a keyword  

> volume #4 planes z,5

> volume #4 region 0,0,0,1022,1439,599 step 4

> volume #4 region 0,0,0,1022,1439,599 step 4 showOutlineBox true imageMode
> "tilted slab" tiltedSlabAxis 0.02836,-0.1331,0.9907 tiltedSlabOffset 199.2
> tiltedSlabPlaneCount 30

> volume #4 tiltedSlabAxis 0.1809,0.1628,0.9699 tiltedSlabOffset 468.3

> volume #4 region 0,0,0,1022,1439,599 step 1 colorMode opaque8 orthoplanes
> xyz positionPlanes 511,719,299 imageMode orthoplanes

> volume #4 region 0,0,0,1022,1439,599 step 4 maximumIntensityProjection true
> colorMode auto8 imageMode "full region"

> volume #4 region 0,0,296,1022,1439,296 step 1 maximumIntensityProjection
> false

> volume #4 region 0,0,251,1022,1439,251

> volume #4 region 0,0,263,1022,1439,263

> close

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/Movie/PCR_average_Movie.cxs
> format session

/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1_top.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1_bot.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 725, in restore  
obj = sm.restore_snapshot(self, data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/segger/regions.py", line 985, in restore_snapshot  
sp = r.make_surface()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/segger/regions.py", line 1189, in make_surface  
tf.transform_points(vertices, in_place = True)  
AttributeError: 'NoneType' object has no attribute 'transform_points'  
  
opened ChimeraX session  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/Movie/PCR_average_Movie.cxs
> format session

/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1_top.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1_bot.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 725, in restore  
obj = sm.restore_snapshot(self, data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/segger/regions.py", line 985, in restore_snapshot  
sp = r.make_surface()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/segger/regions.py", line 1189, in make_surface  
tf.transform_points(vertices, in_place = True)  
AttributeError: 'NoneType' object has no attribute 'transform_points'  
  
opened ChimeraX session  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/Movie/PCR_average_Movie.cxs
> format session

/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1_top.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1_bot.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 725, in restore  
obj = sm.restore_snapshot(self, data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/segger/regions.py", line 985, in restore_snapshot  
sp = r.make_surface()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/segger/regions.py", line 1189, in make_surface  
tf.transform_points(vertices, in_place = True)  
AttributeError: 'NoneType' object has no attribute 'transform_points'  
  
opened ChimeraX session  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/Movie/PCR_average_Movie.txt

Unrecognized file suffix '.txt'  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/Movie/PCR_average_Movie.cxs

/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1_top.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1_bot.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 725, in restore  
obj = sm.restore_snapshot(self, data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/segger/regions.py", line 985, in restore_snapshot  
sp = r.make_surface()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/segger/regions.py", line 1189, in make_surface  
tf.transform_points(vertices, in_place = True)  
AttributeError: 'NoneType' object has no attribute 'transform_points'  
  
opened ChimeraX session  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1.mrc
> format mrc

Summary of feedback from opening
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1.mrc  
---  
note |
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
  
Opened run1.mrc as #1, grid size 360,360,360, pixel 1, shown at level 4.07,
step 2, values float32  

> open
> /ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/Movie/PCR_average_Movie.cxs

/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1_top.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
/ChangLab1-hd2/matt/Cryptosporidium/ApicalRing/Dynamo_PCR/AlignedAverages/run1_bot.mrc:
invalid cell angles 0,0,0 must be between 0 and 180.  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/session.py", line 725, in restore  
obj = sm.restore_snapshot(self, data)  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/segger/regions.py", line 985, in restore_snapshot  
sp = r.make_surface()  
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/segger/regions.py", line 1189, in make_surface  
tf.transform_points(vertices, in_place = True)  
AttributeError: 'NoneType' object has no attribute 'transform_points'  
  
opened ChimeraX session  




OpenGL version: 3.3.0 NVIDIA 384.130
OpenGL renderer: Quadro P4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Dell Inc.
Model: Precision 7920 Tower
OS: Ubuntu 16.04 xenial
Architecture: 64bit ELF
Virutal Machine: none
CPU: 24 Intel(R) Xeon(R) Gold 6136 CPU @ 3.00GHz
Cache Size: 25344 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:            62G         12G         40G        816M        9.7G         48G
	Swap:            0B          0B          0B

Graphics:
	17:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP104GL [Quadro P4000] [10de:1bb1] (rev a1)	
	Subsystem: Dell Device [1028:11a3]	
	Kernel driver in use: nvidia
Locale: ('en_US', 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-LinuxSupport: 1.0
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    distro: 1.6.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    line-profiler: 3.3.0
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    ptyprocess: 0.7.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
File attachment: PCR_average_Movie.cxs

PCR_average_Movie.cxs

Change History (2)

comment:1 by mpm896@…, 3 years ago

None
File PCR_average_Movie.cxs is larger then allowed attachment size (191207483 > 134217728)

comment:2 by Eric Pettersen, 3 years ago

Component: Unassigned → Sessions
Description: modified (diff)
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Maps in sessions with invalid cell angles

Reported by Matthew Martinez

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