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Opened 3 years ago
Last modified 3 years ago
#7751 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sessions | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
ValueError: error processing: 'tools' -> -> 'segment map': Error while saving session data for 'tools' -> -> 'segment map'
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/jliu/Desktop/Export_appratus/Session/3A.cxs
Opened Bb-EXP-2.7A.mrc as #1, grid size 128,128,128, pixel 2.7, shown at step
1, values float32
Opened Bb-EXP-2.7A_imasked as #4, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked as #6, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked as #3, grid size 128,128,128, pixel 2.7, shown
at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked as #8, grid size 128,128,128, pixel
2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked as #10, grid size 128,128,128,
pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked as #13, grid size
128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #15, grid
size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#17, grid size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values
float32
Opened Bb-EXP-2.7A_imasked as #5, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
Opened Bb-EXP-2.7A_imasked as #9, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2.7A_imasked as #7, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2.7A_imasked as #11, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #18, grid
size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #19, grid
size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked as #20, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked as #21, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#22, grid size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values
float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#23, grid size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values
float32
Opened Bb-EXP-2.7A_imasked as #24, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Log from Tue Oct 4 14:34:08 2022UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/jliu/Desktop/Export_appratus/Session/3B.cxs
Opened Bb-EXP-2.7A.mrc as #1, grid size 128,128,128, pixel 2.7, shown at step
1, values float32
Opened Bb-EXP-2.7A_imasked as #4, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked as #6, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked as #3, grid size 128,128,128, pixel 2.7, shown
at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked as #8, grid size 128,128,128, pixel
2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked as #10, grid size 128,128,128,
pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked as #13, grid size
128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #15, grid
size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#17, grid size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values
float32
Opened Bb-EXP-2.7A_imasked as #5, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
Opened Bb-EXP-2.7A_imasked as #9, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2.7A_imasked as #7, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2.7A_imasked as #11, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #18, grid
size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #19, grid
size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked as #20, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked as #21, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#22, grid size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values
float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#23, grid size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values
float32
Opened Bb-EXP-2.7A_imasked as #24, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Log from Tue Oct 4 11:33:43 2022UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/jliu/Desktop/Export_appratus/Session/Fig3.cxs
Opened Bb-EXP-2.7A.mrc as #1, grid size 128,128,128, pixel 2.7, shown at step
1, values float32
Opened Bb-EXP-2.7A_imasked as #4, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked as #6, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked as #3, grid size 128,128,128, pixel 2.7, shown
at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked as #8, grid size 128,128,128, pixel
2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked as #10, grid size 128,128,128,
pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked as #13, grid size
128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #15, grid
size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#17, grid size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values
float32
Opened Bb-EXP-2.7A_imasked as #5, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
Opened Bb-EXP-2.7A_imasked as #9, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2.7A_imasked as #7, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2.7A_imasked as #11, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #18, grid
size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #19, grid
size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked as #20, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked as #21, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#22, grid size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values
float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#23, grid size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values
float32
Opened Bb-EXP-2.7A_imasked as #24, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Log from Tue Oct 4 10:50:46 2022UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/jliu/Desktop/Export_appratus/Session/Fig3.cxs
Opened Bb-EXP-2.7A.mrc as #1, grid size 128,128,128, pixel 2.7, shown at step
1, values float32
Opened Bb-EXP-2.7A_imasked as #4, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked as #6, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked as #3, grid size 128,128,128, pixel 2.7, shown
at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked as #8, grid size 128,128,128, pixel
2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked as #10, grid size 128,128,128,
pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked as #13, grid size
128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #15, grid
size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#17, grid size 128,128,128, pixel 2.7, shown at level 0.2, step 1, values
float32
Opened Bb-EXP-2.7A_imasked as #5, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2.7A_imasked as #9, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2.7A_imasked as #7, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Opened Bb-EXP-2.7A_imasked as #11, grid size 128,128,128, pixel 2.7, shown at
level 0.2, step 1, values float32
Log from Mon Oct 3 13:44:28 2022UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/jliu/Desktop/Export_appratus/Bb-EXP-2.7A.mrc
Opened Bb-EXP-2.7A.mrc as #1, grid size 128,128,128, pixel 2.7, shown at level
3.69, step 1, values float32
> view orient
> turn -x 90
> volume #1 level 0.2
> volume showOutlineBox true
> ui tool show "Segment Map"
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 60 of 200 regions.
Showing 60 of 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 60 surfaces
Grouped 9 regions
> ui tool show "Color Actions"
No visible atoms or bonds selected
[Repeated 43 time(s)]
> ui tool show "Color Actions"
> color sel orange
> color sel medium sea green
> color sel lime green
> color sel forest green
> color sel medium sea green
> color sel sea green
> select clear
Opened Bb-EXP-2.7A_imasked as #3, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!2 models
> hide #!1 models
> hide #!3 models
> show #!3 models
> close #3
> show #!1 models
> show #!2 models
> close #2
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 60 of 200 regions.
Showing 60 of 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 60 surfaces
Grouped 8 regions
Grouped 2 regions
> hide #!1 models
> show #!1 models
> hide #1.1 models
> show #1.1 models
> hide #!1 models
> hide #1.1 models
> show #1.1 models
> hide #!1 models
> select clear
> close #2
> show #!1 models
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
Grouped 9 regions
> hide #!1 models
> show #!1 models
> hide #!1 models
Opened Bb-EXP-2.7A_imasked as #3, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!2 models
> hide #1.1 models
> color #3 forest green
> select #3
2 models selected
> ui tool show "Color Actions"
QMainWindowLayout::tabPosition called with out-of-bounds value '0'
> color sel medium sea green target s
> color sel sea green target s
> select clear
> show #!1 models
> hide #!1 models
> show #!1 models
> show #1.1 models
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
Drag select of 2491, 8295 of 25860 triangles, 2485, 1337 of 21840 triangles,
2527, 3336 of 12072 triangles, 2498, 2483 of 10648 triangles, 2500, 1675 of
10660 triangles, 2499, 5733 of 10644 triangles, 2536, 705 of 10488 triangles,
2360, 2109 of 7748 triangles, 2523, 70 of 7184 triangles, 2522, 1924 of 7184
triangles, 2228, 1683 of 4660 triangles, 2415, 2254 of 4020 triangles, 2186,
790 of 3004 triangles, 2379, 404 of 1236 triangles, 2393, 1032 of 1188
triangles, 2392, 1185 of 1192 triangles, 2396, 244 of 1124 triangles, 2082,
367 of 756 triangles, 2055, 647 of 808 triangles, 2068, 320 of 744 triangles,
2539, 180 of 424 triangles, 1 Bb-EXP-2.7A.mrc , 3 Bb-EXP-2.7A_imasked
> select clear
Grouped 9 regions
> ui mousemode right "crop volume"
> volume #1 region 0,0,0,127,58,127
Opened Bb-EXP-2.7A_imasked as #4, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!3 models
> hide #!2 models
> hide #1.1 models
> hide #!1 models
> ui mousemode right "crop volume"
> volume #4 region 0,0,0,127,127,127
> select #4
2 models selected
> color sel orange target s
> select clear
> show #!1 models
> hide #!1 models
> show #!1 models
> show #1.1 models
> hide #!1 models
> show #!1 models
> hide #3.1 models
> hide #!4 models
> hide #4.1 models
> hide #1.1 models
> show #1.1 models
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
> hide #!1 models
> show #!1 models
> close #4
> show #!3 models
> hide #1.1 models
> hide #!1 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #3.1 models
> ui mousemode right "crop volume"
> volume #3 region 0,0,0,127,126,127
> select #3
2 models selected
Please select one ore more regions
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> close #2
> hide #!3 models
> show #!3 models
> close #3
> show #!1 models
> show #1.1 models
> ui mousemode right "crop volume"
> volume #1 region 0,0,0,127,58,103
> volume #1 region 0,0,0,127,126,103
> volume #1 region 0,0,0,127,126,102
> volume #1 region 0,0,0,127,126,127
[Repeated 1 time(s)]
> volume #1 region 0,0,0,127,127,127
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
Grouped 9 regions
Opened Bb-EXP-2.7A_imasked as #3, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> hide #1.1 models
> show #1.1 models
> hide #!1 models
> show #!2 models
> show #!1 models
Opened Bb-EXP-2.7A_imasked as #4, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #1.1 models
> hide #!1 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> show #!4 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> select add #3
193 models selected
> select add #2
195 models selected
> select subtract #2
2 models selected
> close #2
> show #!4 models
> hide #!4 models
> hide #!3 models
> show #!3 models
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> close #2
> select add #3
2 models selected
> select clear
> select #3
2 models selected
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> hide #4.1 models
> show #!4 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> hide #4.1 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 180 region surfaces
1359 watershed regions, grouped to 180 regions
Showing Bb-EXP-2.seg - 180 regions, 180 surfaces
Drag select of 1968, 740 of 18936 triangles, 1970, 441 of 12684 triangles,
1978, 629 of 15272 triangles, 1989, 301 of 11880 triangles, 1977, 758 of 13160
triangles, 1988, 201 of 12268 triangles, 1981, 436 of 9340 triangles, 1975,
1700 of 11104 triangles, 1982, 5 of 8884 triangles, 1994, 1171 of 9748
triangles, 1996, 980 of 6776 triangles, 1743, 604 of 5516 triangles, 1881, 956
of 4276 triangles, 1869, 743 of 2908 triangles, 3 Bb-EXP-2.7A_imasked
> select clear
Grouped 6 regions
Opened Bb-EXP-2_imasked as #5, grid size 128,128,128, pixel 2.7, shown at step
1, values float32
Opened Bb-EXP-2_imasked as #6, grid size 128,128,128, pixel 2.7, shown at step
1, values float32
> hide #!5 models
> show #!5 models
> hide #!5 models
> close #2
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!6 models
> show #!6 models
> show #!5 models
> hide #!5 models
> show #!5 models
> close #6
> close #5
> show #!4 models
> hide #!4 models
> show #4.1 models
> show #!3 models
> hide #!4 models
> hide #4.1 models
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 180 region surfaces
1359 watershed regions, grouped to 180 regions
Showing Bb-EXP-2.seg - 180 regions, 180 surfaces
Grouped 9 regions
Opened Bb-EXP-2_imasked as #5, grid size 128,128,128, pixel 2.7, shown at step
1, values float32
> hide #!2 models
> show #!2 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> show #!3 models
Opened Bb-EXP-2_imasked as #6, grid size 128,128,128, pixel 2.7, shown at step
1, values float32
> hide #!5 models
> hide #!3 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> color sel orange target s
> select add #6
173 models selected
> color sel orange target s
> select clear
> show #!5 models
> show #4.1 models
> hide #4.1 models
> hide #!4 models
> show #!4 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> hide #4.1 models
> hide #!5 models
> hide #!6 models
> hide #!3 models
> show #!6 models
> show #!5 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #4.1 models
> show #!3 models
> hide #!3 models
> hide #!4 models
> hide #4.1 models
> hide #!5 models
> hide #!6 models
> show #!3 models
> close #3
> show #!4 models
> show #4.1 models
> show #!5 models
> show #!6 models
> show #!2 models
> hide #!2 models
> hide #4.1 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> hide #4.1 models
> hide #!5 models
> show #!5 models
> show #4.1 models
> hide #4.1 models
> hide #!6 models
> hide #!5 models
> show #4.1 models
> show #!5 models
> hide #4.1 models
> hide #!4 models
Segmenting Bb-EXP-2_imasked, density threshold 0.200000
Showing 171 region surfaces
1225 watershed regions, grouped to 171 regions
Showing Bb-EXP-2_imasked.seg - 171 regions, 171 surfaces
> surface dust #5 size 27
[Repeated 2 time(s)]Grouped 6 regions
Grouped 2 regions
[Repeated 1 time(s)]Opened Bb-EXP-2_imasked_imasked as #3, grid size
128,128,128, pixel 2.7, shown at step 1, values float32
> hide #!5 models
> hide #!3 models
> hide #!2 models
> show #!6 models
> show #!5 models
> show #!3 models
> show #!2 models
> show #!4 models
> hide #!3 models
> hide #!2 models
> hide #!5 models
> hide #!6 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!3 models
> close #3
> show #!2 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> select clear
Opened Bb-EXP-2_imasked_imasked as #3, grid size 128,128,128, pixel 2.7, shown
at step 1, values float32
> hide #!3 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!3 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> show #!5 models
> show #!6 models
> hide #!6 models
> hide #!5 models
> show #!5 models
> hide #4.1 models
> hide #!4 models
> hide #!3 models
> select add #2
165 models selected
> select subtract #2
Nothing selected
> hide #!5 models
> show #!5 models
> show #4.1 models
> hide #!5 models
> color medium sea green target s
> color sea green target s
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!6 models
> select add #6
2 models selected
> color sel orange target s
> hide #4.1 models
> show #!5 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> hide #4.1 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> show #4.1 models
> hide #4.1 models
> select #5
2 models selected
> select clear
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> show #!3 models
> hide #!4 models
> hide #4.1 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> select #5
2 models selected
> select clear
> hide #!6 models
> hide #!3 models
> show #4.1 models
> hide #4.1 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> hide #4.1 models
> hide #!3 models
> show #4.1 models
> hide #!4 models
> hide #4.1 models
> show #4.1 models
> hide #!5 models
> hide #!4 models
> hide #4.1 models
> show #!6 models
> hide #!6 models
> show #4.1 models
> hide #4.1 models
> show #!5 models
> show #!3 models
> hide #!5 models
> hide #!4 models
> close #3
> show #!2 models
> hide #!2 models
> show #1.1 models
> hide #1.1 models
> show #1.1 models
> show #!4 models
> show #!2 models
> hide #!4 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #1.1 models
> hide #!1 models
> show #!2 models
Grouped 3 regions
Opened Bb-EXP-2_imasked_imasked as #3, grid size 128,128,128, pixel 2.7, shown
at step 1, values float32
> hide #!2 models
> select #3
2 models selected
> color sel orange target s
> select clear
> hide #!3 models
> show #!2 models
Drag select of 1816, 137 of 69652 triangles
Opened Bb-EXP-2_imasked_imasked as #7, grid size 128,128,128, pixel 2.7, shown
at step 1, values float32
> hide #!2 models
> surface dust #7 size 27
Segmenting Bb-EXP-2_imasked, density threshold 0.200000
Showing 171 region surfaces
1225 watershed regions, grouped to 171 regions
Showing Bb-EXP-2_imasked.seg - 171 regions, 171 surfaces
> close #2
> hide #!7 models
> show #!3 models
> hide #!3 models
> show #1.1 models
> hide #1.1 models
> show #!4 models
> hide #!4 models
> show #!6 models
> hide #!6 models
> show #!7 models
Segmenting Bb-EXP-2_imasked_imasked, density threshold 0.200000
Showing 164 region surfaces
1068 watershed regions, grouped to 164 regions
Showing Bb-EXP-2_imasked_imasked.seg - 164 regions, 164 surfaces
Segmenting Bb-EXP-2_imasked_imasked, density threshold 0.200000
Only showing 100 of 164 regions.
Showing 100 of 164 region surfaces
1068 watershed regions, grouped to 164 regions
Showing Bb-EXP-2_imasked_imasked.seg - 164 regions, 100 surfaces
Grouped 8 regions
Opened Bb-EXP-2_imasked_imasked_imasked as #8, grid size 128,128,128, pixel
2.7, shown at step 1, values float32
> hide #!7 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> show #!7 models
> show #!6 models
> hide #!7 models
> hide #!6 models
> hide #!1 models
> close #8
> show #!2 models
> show #!1 models
> show #1.1 models
> hide #!1 models
> hide #1.1 models
> hide #!2 models
> show #!2 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!2 models
> close #2
> show #!7 models
Segmenting Bb-EXP-2_imasked_imasked, density threshold 0.200000
Showing 164 region surfaces
1068 watershed regions, grouped to 164 regions
Showing Bb-EXP-2_imasked_imasked.seg - 164 regions, 164 surfaces
> hide #!2 models
> show #!2 models
> hide #!7 models
> show #!7 models
Grouped 8 regions
Opened Bb-EXP-2_imasked_imasked_imasked as #8, grid size 128,128,128, pixel
2.7, shown at step 1, values float32
> hide #!7 models
> hide #!2 models
> show #!2 models
> show #!7 models
Opened Bb-EXP-2_imasked_imasked_imasked as #9, grid size 128,128,128, pixel
2.7, shown at step 1, values float32
> hide #!7 models
> hide #!8 models
> hide #!2 models
> hide #!9 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!9 models
Segmenting Bb-EXP-2_imasked_imasked, density threshold 0.200000
Showing 164 region surfaces
1068 watershed regions, grouped to 164 regions
Showing Bb-EXP-2_imasked_imasked.seg - 164 regions, 164 surfaces
> hide #!2 models
Segmenting Bb-EXP-2_imasked_imasked_imasked, density threshold 0.200000
Showing 156 region surfaces
951 watershed regions, grouped to 156 regions
Showing Bb-EXP-2_imasked_imasked_imasked.seg - 156 regions, 156 surfaces
Grouped 8 regions
Grouped 2 regions
Opened Bb-EXP-2_imasked_imasked_imasked_imasked as #10, grid size 128,128,128,
pixel 2.7, shown at step 1, values float32
> hide #!9 models
> hide #!2 models
> show #!2 models
> show #!9 models
> hide #!10 models
> select clear
> hide #!9 models
> show #!9 models
Opened Bb-EXP-2_imasked_imasked_imasked_imasked as #11, grid size 128,128,128,
pixel 2.7, shown at step 1, values float32
> hide #!9 models
> hide #!11 models
> show #!11 models
> hide #!2 models
> show #!10 models
> hide #!11 models
> hide #!10 models
> show #!11 models
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked, density threshold
0.200000
Showing 147 region surfaces
895 watershed regions, grouped to 147 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked.seg - 147 regions, 147
surfaces
Grouped 37 regions
Grouped 5 regions
Grouped 2 regions
Grouped 1 regions
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked as #12, grid size
128,128,128, pixel 2.7, shown at step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked as #13, grid size
128,128,128, pixel 2.7, shown at step 1, values float32
> hide #!11 models
> hide #!12 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!13 models
> show #!13 models
> show #!2 models
> hide #!13 models
> show #!13 models
> hide #!2 models
> show #!12 models
> hide #!13 models
> select #12
2 models selected
> select clear
Drag select of 12 Bb-EXP-2_imasked_imasked_imasked_imasked_imasked
> select clear
> select #12
2 models selected
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked, density threshold
0.200000
Showing 41 region surfaces
97 watershed regions, grouped to 41 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked.seg - 41 regions, 41
surfaces
> select clear
> hide #!12 models
> show #!13 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!13 models
> show #!12 models
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked, density threshold
0.200000
Showing 106 region surfaces
798 watershed regions, grouped to 106 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked.seg - 106 regions,
106 surfaces
Grouped 19 regions
Grouped 2 regions
Grouped 15 regions
Grouped 5 regions
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #14, grid
size 128,128,128, pixel 2.7, shown at step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #15, grid
size 128,128,128, pixel 2.7, shown at step 1, values float32
> select clear
> hide #!12 models
> hide #!14 models
> hide #!2 models
> show #!14 models
> hide #!15 models
> select #14
2 models selected
> hide #!14 models
> show #!14 models
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 69 region surfaces
555 watershed regions, grouped to 69 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 69
regions, 69 surfaces
Grouped 22 regions
Grouped 3 regions
Grouped 2 regions
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#16, grid size 128,128,128, pixel 2.7, shown at step 1, values float32
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#17, grid size 128,128,128, pixel 2.7, shown at step 1, values float32
> hide #!14 models
> hide #!16 models
> hide #!2 models
> show #!16 models
> hide #!17 models
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!15 models
> show #!14 models
> show #!13 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> show #!15 models
> show #!14 models
> hide #!14 models
> hide #!15 models
> hide #!16 models
> show #!17 models
> show #!4 models
> show #4.1 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!16 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!16 models
> select #16
2 models selected
> hide #!4 models
> show #!4 models
> hide #!4 models
> hide #4.1 models
> hide #!16 models
> show #!16 models
> hide #!17 models
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 69 region surfaces
555 watershed regions, grouped to 69 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 69
regions, 69 surfaces
> select clear
[Repeated 1 time(s)]Drag select of 729, 727, 723, 746, 602, 616, 626, 601,
615, 814, 808, 813, 16 Bb-
EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#18, grid size 128,128,128, pixel 2.7, shown at step 1, values float32
> hide #!16 models
> show #!16 models
> hide #!18 models
> show #!18 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> show #!17 models
> hide #!18 models
> hide #!2 models
> hide #!16 models
> hide #!17 models
> show #!17 models
> show #!18 models
> hide #!18 models
> show #!18 models
> show #!16 models
> select clear
> hide #!17 models
> hide #!18 models
> hide #!16 models
> show #!16 models
> close #16
> show #!15 models
> show #!14 models
> hide #!15 models
> hide #!14 models
> show #!14 models
> close #14
> show #!12 models
> show #!11 models
> hide #!11 models
> show #!11 models
> hide #!11 models
> close #12
> show #!11 models
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!11 models
> show #!11 models
> hide #!11 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!9 models
> show #!11 models
> hide #!11 models
> show #!11 models
> hide #!11 models
> hide #!9 models
> show #!11 models
> show #!9 models
> hide #!9 models
> show #!9 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!10 models
> hide #!9 models
> hide #!8 models
> hide #!11 models
> show #!18 models
> show #!17 models
> hide #!18 models
> show #!18 models
> hide #!17 models
> hide #!18 models
> show #!17 models
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!4 models
> show #4.1 models
> hide #!4 models
> hide #4.1 models
> hide #!17 models
> show #!11 models
> hide #!11 models
> show #!10 models
> select #10
2 models selected
> turn -x 90
> color sel black target s
> select clear
> set bgColor white
> show #!11 models
> hide #!10 models
> hide #!11 models
> show #!10 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!10 models
> select add #8
2 models selected
> color sel dark gray target s
> show #!10 models
> show #!6 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> close #5
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!18 models
> close #18
> show #!17 models
> hide #!17 models
> show #!17 models
> show #!15 models
> hide #!15 models
> show #!15 models
> select add #8
2 models selected
> select subtract #8
Nothing selected
> select add #15
2 models selected
> color sel spring green target s
> color sel lime green target s
> color sel medium sea green target s
> select clear
> show #!13 models
> select subtract #15
Nothing selected
> select add #13
2 models selected
> color sel medium sea green target s
> select #15
2 models selected
> select clear
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> close #9
> show #!11 models
> hide #!11 models
> show #!11 models
> hide #!11 models
> close #11
> show #!7 models
> hide #!7 models
> close #7
> show #!3 models
> hide #!3 models
> show #!3 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> close #2
> show #!1 models
> hide #!1 models
> view orient
> turn -x 90
[Repeated 1 time(s)]
> ui mousemode right "crop volume"
> volume #4 region 0,0,0,127,127,127
> turn -x 90
> volume #4 region 0,0,0,127,127,119
> view orient
> turn -x 90
> volume #4 region 0,0,1,127,127,119
> volume #4 region 62,0,1,127,127,119
> turn -x 90
[Repeated 3 time(s)]
> turn -y 90
[Repeated 2 time(s)]
> volume #4 region 62,0,1,127,127,127
> select #10
2 models selected
No segmentation chosen
[Repeated 1 time(s)]
> select clear
No segmentation chosen
[Repeated 1 time(s)]
> turn -y 90
> select #8
2 models selected
> select clear
> select #8
2 models selected
No segmentation chosen
> select clear
> select #8
2 models selected
> hide #!8 models
> hide #!10 models
> turn -y 90
[Repeated 2 time(s)]
> volume #4 region 41,0,1,127,127,127
> show #!8 models
> hide #!8 models
> show #1.1 models
> hide #1.1 models
> select add #1
4 models selected
> color sel light gray target s
[Repeated 1 time(s)]
> color #1 #d6d6d6 models transparency 0
> hide #!1 models
> show #!1 models
> hide #!3 models
> hide #!4 models
> hide #4.1 models
> hide #!6 models
> hide #!13 models
> hide #!15 models
> hide #!17 models
> show #!3 models
> show #!4 models
> show #4.1 models
> show #!6 models
> show #!13 models
> show #!15 models
> show #!17 models
> hide #!3 models
> hide #!4 models
> hide #4.1 models
> hide #!6 models
> hide #!13 models
> hide #!15 models
> hide #!17 models
> show #1.1 models
> select clear
> volume #1 region 0,0,0,127,127,127
> ui mousemode right "crop volume"
> volume #1 region 0,0,0,127,127,127
> volume #1 region 66,0,0,127,127,127
> volume #1 region 0,0,0,127,127,127
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
Drag select of 2544, 2577 of 9884 triangles, 2360, 1974 of 6728 triangles,
2221, 1814 of 6580 triangles, 2357, 2162 of 6396 triangles, 2224, 1577 of 6492
triangles, 2354, 1410 of 6064 triangles, 2215, 1772 of 6124 triangles, 2219,
1853 of 5820 triangles, 1 Bb-EXP-2.7A.mrc
> hide #!1 models
> select clear
[Repeated 1 time(s)]
> view orient
[Repeated 2 time(s)]
> turn -y 90
[Repeated 4 time(s)]Drag select of 2550, 668 of 6936 triangles, 2469, 856 of
6348 triangles, 2423, 4743 of 5924 triangles, 2466, 2977 of 5972 triangles,
2551, 2662 of 5504 triangles, 2391, 3607 of 6588 triangles, 2283, 4948 of 5404
triangles, 2223, 4358 of 6916 triangles, 2460, 4099 of 5396 triangles, 2483,
1079 of 5028 triangles, 2220, 3787 of 6328 triangles, 2416, 35 of 5220
triangles, 2417, 1998 of 5144 triangles, 2415, 169 of 4932 triangles, 2185,
1799 of 4788 triangles, 2549, 2370 of 4876 triangles, 2400, 3401 of 5608
triangles, 2386, 3137 of 5584 triangles, 2381, 3519 of 5860 triangles, 2180,
541 of 4968 triangles, 2011, 2965 of 4180 triangles, 2021, 1162 of 4112
triangles, 2397, 2360 of 5192 triangles, 2398, 2464 of 4992 triangles, 1537,
1226 of 4276 triangles, 1525, 1760 of 4088 triangles, 1531, 1791 of 4112
triangles, 1532, 24 of 4112 triangles, 1535, 1234 of 4084 triangles, 2037, 17
of 3396 triangles, 2012, 1249 of 4016 triangles, 2026, 2378 of 3320 triangles,
1534, 319 of 4024 triangles, 2015, 2868 of 3232 triangles, 2032, 2868 of 3356
triangles, 1558, 1798 of 2880 triangles, 2033, 2266 of 2724 triangles, 2200,
369 of 2504 triangles, 1544, 79 of 1688 triangles, 1593, 936 of 1804
triangles, 1547, 319 of 1132 triangles
> view orient
[Repeated 1 time(s)]
> turn -y 90
[Repeated 4 time(s)]Drag select of 2536, 3500 of 6912 triangles, 2461, 4288 of
4952 triangles, 2341, 3812 of 4336 triangles, 1512, 2152 of 4100 triangles,
1604, 3026 of 3232 triangles, 2036, 2942 of 3472 triangles, 1536, 1921 of 3836
triangles, 2030, 2658 of 2932 triangles, 1539, 1649 of 2552 triangles, 2198,
1811 of 2384 triangles
Grouped 9 regions
> select clear
Grouped 15 regions
Grouped 4 regions
Grouped 2 regions
> select clear
Drag select of 2553, 222 of 27040 triangles, 2552, 277 of 21532 triangles,
2519, 240 of 9340 triangles, 2498, 218 of 9748 triangles, 2242, 347 of 4716
triangles, 2239, 128 of 4728 triangles, 2320, 145 of 4708 triangles, 2312, 123
of 4256 triangles, 2377, 227 of 3404 triangles, 1992, 41 of 2596 triangles,
2000, 190 of 2468 triangles, 1980, 34 of 2536 triangles, 1981, 59 of 2448
triangles, 1833, 248 of 2472 triangles, 2554, 424 of 57632 triangles, 3 Bb-
EXP-2_imasked_imasked
> select clear
[Repeated 2 time(s)]Drag select of 2534, 10611 of 10864 triangles, 2514, 9746
of 10748 triangles, 2524, 9361 of 10596 triangles, 2547, 10453 of 10648
triangles, 2545, 9578 of 10648 triangles, 2513, 10563 of 10660 triangles,
2523, 10135 of 10716 triangles, 2530, 10605 of 10644 triangles, 2499, 10060 of
10572 triangles, 2490, 708 of 12084 triangles, 2259, 185 of 5480 triangles,
2263, 188 of 5228 triangles, 2266, 79 of 5180 triangles, 2262, 361 of 4660
triangles, 2264, 56 of 4524 triangles, 2302, 2334, 2292, 2337, 2008, 2186,
2191, 2190, 2048, 2511, 193 of 424 triangles, 2515, 301 of 328 triangles,
2509, 56 of 280 triangles, 3 Bb-EXP-2_imasked_imasked
> select clear
Opened Bb-EXP-2.7A_imasked as #5, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!3 models
> hide #!2 models
> hide #1.1 models
> hide #!5 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> volume #4 region 41,0,1,127,127,127
[Repeated 1 time(s)]
> volume #4 region 41,0,1,127,127,115
> set bgColor black
> ui mousemode right "crop volume"
> volume #4 region 0,0,1,127,127,115
> hide #4.1 models
> hide #!4 models
> show #!17 models
> volume #17 region 0,0,1,127,127,127
> show #!15 models
> hide #!15 models
> show #!15 models
> volume #17 region 0,0,1,127,127,127
> show #!13 models
> volume #15 region 0,2,1,127,127,127
> show #!10 models
> volume #13 region 0,0,1,127,127,127
> show #!8 models
> volume #10 region 0,0,1,127,127,127
> show #!6 models
> volume #8 region 0,0,1,127,127,127
> show #!1 models
> show #1.1 models
> show #!2 models
> show #!3 models
> show #!4 models
> show #4.1 models
> show #!5 models
> volume #1 region 0,0,0,127,127,127
[Repeated 1 time(s)]
> select clear
> hide #1.1 models
> hide #!2 models
> hide #!4 models
> show #!4 models
> hide #!5 models
> hide #!8 models
> hide #!6 models
> hide #!10 models
> hide #4.1 models
> show #4.1 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #4.1 models
> hide #!4 models
> hide #!3 models
> hide #!1 models
> hide #!13 models
> hide #!15 models
> hide #!17 models
> show #!17 models
> hide #!17 models
> close #5
> show #!1 models
> show #1.1 models
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
> hide #!1 models
> select clear
Drag select of 2507, 4114 of 9884 triangles, 2386, 2556 of 6728 triangles,
2392, 3445 of 6580 triangles, 2384, 3013 of 6396 triangles, 2414, 3295 of 6492
triangles, 2382, 2991 of 6064 triangles, 2334, 833 of 6588 triangles, 2387,
2939 of 6124 triangles, 2391, 2429 of 5820 triangles, 2328, 993 of 6916
triangles, 2331, 595 of 6328 triangles, 2339, 376 of 5608 triangles, 2343, 307
of 5584 triangles, 2330, 463 of 5860 triangles, 2326, 359 of 5192 triangles
> select clear
[Repeated 6 time(s)]Drag select of 2530, 1001 of 11260 triangles, 2500, 1048
of 9880 triangles, 2514, 669 of 9340 triangles, 2524, 2088 of 8884 triangles,
2490, 1470 of 10052 triangles, 2538, 34 of 8108 triangles, 2493, 591 of 9748
triangles, 2497, 122 of 8204 triangles, 2537, 1272 of 8156 triangles, 2489,
1871 of 7348 triangles, 2544, 2238 of 7184 triangles, 2547, 456 of 7164
triangles, 2352, 41 of 5516 triangles, 2499, 82 of 4664 triangles, 2135, 956
of 2468 triangles, 2134, 308 of 2448 triangles, 2127, 952 of 2472 triangles
> select clear
Grouped 8 regions
Grouped 2 regions
Grouped 1 regions
Grouped 3 regions
> select clear
Opened Bb-EXP-2.7A_imasked as #5, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!5 models
> show #!5 models
> hide #!2 models
> hide #1.1 models
> hide #!5 models
> show #!5 models
> color sel medium sea green target s
> select add #5
191 models selected
> color sel medium sea green target s
> select clear
> view orient
[Repeated 2 time(s)]
> turn -y 90
[Repeated 3 time(s)]
> turn -x 90
> hide #5.1 models
> show #5.1 models
> hide #!5 models
> show #!5 models
> show #!13 models
> show #!15 models
> show #!17 models
> show #4.1 models
> show #!3 models
> show #!6 models
> show #!8 models
> hide #!8 models
> select clear
> hide #5.1 models
> hide #!6 models
> hide #!5 models
> hide #!4 models
> hide #!3 models
> hide #4.1 models
> hide #!13 models
> hide #!15 models
> hide #!17 models
> show #!1 models
> show #1.1 models
> hide #1.1 models
> hide #!1 models
> show #!1 models
> show #1.1 models
> hide #1.1 models
> hide #!1 models
> show #!3 models
> show #!6 models
> show #5.1 models
> hide #5.1 models
> show #5.1 models
> hide #5.1 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> hide #4.1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> show #2.1 models
> hide #2.1 models
> show #2.2 models
> show #2.1 models
> hide #2.2 models
> show #2.3 models
> show #2.4 models
> show #2.5 models
> show #2.6 models
> hide #2.6 models
> show #2.11 models
> show #2.12 models
> close #2
> show #!3 models
> show #!6 models
> hide #!6 models
> hide #!3 models
> show #!1 models
> show #!3 models
> show #1.1 models
> hide #!3 models
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
> view orient
[Repeated 1 time(s)]
> turn -x 90
Drag select of 2513, 8601 of 9884 triangles, 2516, 1730 of 6936 triangles,
2527, 16 of 6912 triangles, 2424, 3127 of 5924 triangles, 2314, 6638 of 6728
triangles, 2257, 4995 of 6580 triangles, 2263, 5961 of 6396 triangles, 2410,
4965 of 6492 triangles, 2523, 4185 of 5504 triangles, 2270, 4365 of 6064
triangles, 2248, 3254 of 6588 triangles, 2264, 5011 of 6124 triangles, 2301,
1075 of 5404 triangles, 2371, 5806 of 5820 triangles, 2282, 3090 of 6916
triangles, 2441, 3610 of 5028 triangles, 2431, 2352 of 4952 triangles, 2394,
2513 of 6328 triangles, 2340, 803 of 5220 triangles, 2339, 400 of 5144
triangles, 2519, 63 of 4876 triangles, 2373, 2586 of 5608 triangles, 2372,
2670 of 5584 triangles, 2236, 2406 of 5860 triangles, 2220, 930 of 4336
triangles, 1817, 2739 of 4180 triangles, 2407, 2181 of 5192 triangles, 2289,
2268 of 4992 triangles, 1525, 77 of 4088 triangles, 1604, 22 of 3232
triangles, 1535, 693 of 4084 triangles, 1826, 785 of 4016 triangles, 1791,
2041 of 3396 triangles, 1973, 193 of 3472 triangles, 1536, 253 of 3836
triangles, 1804, 1181 of 3232 triangles, 1558, 2091 of 2880 triangles, 1991,
1466 of 2504 triangles, 1952, 1036 of 2384 triangles, 1547, 395 of 1132
triangles, 1 Bb-EXP-2.7A.mrc
> hide #!1 models
> turn -x 90
> view orient
> turn -x 90
[Repeated 2 time(s)]Drag select of 2432, 4814 of 6348 triangles, 2465, 5250 of
5972 triangles, 2423, 3914 of 5396 triangles, 2341, 1867 of 4932 triangles,
2005, 1259 of 4788 triangles, 1997, 2075 of 4968 triangles, 1799, 3595 of 4112
triangles, 1512, 272 of 4100 triangles, 1537, 1731 of 4276 triangles, 1532,
1063 of 4112 triangles, 1531, 467 of 4112 triangles, 1810, 2880 of 3320
triangles, 1534, 1686 of 4024 triangles, 1968, 2103 of 3356 triangles, 1794,
2020 of 2932 triangles, 1955, 1262 of 2724 triangles, 1539, 587 of 2552
triangles, 1544, 661 of 1688 triangles, 1593, 1484 of 1804 triangles
Grouped 9 regions
> ui tool show "Side View"
> select clear
Drag select of 2530, 2551, 2550, 2503, 2505, 2486, 2499, 2495, 2491, 2497,
4207 of 12084 triangles, 2498, 2514 of 10052 triangles, 2522, 2252 of 9548
triangles, 2492, 2624 of 9748 triangles, 2511, 1045 of 8156 triangles, 2518,
622 of 8180 triangles, 2493, 300 of 8580 triangles, 2502, 408 of 7348
triangles, 2310, 3258 of 5484 triangles, 2311, 2682 of 5480 triangles, 2346,
3102 of 5260 triangles, 2345, 2664 of 5404 triangles, 2313, 1317 of 5228
triangles, 2349, 1455 of 5180 triangles, 2377, 1872 of 4660 triangles, 2307,
1987 of 4524 triangles, 2304, 2630 of 4484 triangles, 2269, 2318, 2405, 2329,
2106, 2102, 2104, 2105, 2040, 2507, 2510, 2542, 2508
> select clear
Drag select of 2444, 24 of 11296 triangles, 2529, 134 of 11260 triangles,
2528, 354 of 9880 triangles, 2534, 456 of 8884 triangles, 2182, 229 of 2468
triangles, 2189, 155 of 2472 triangles, 2554, 216 of 20680 triangles
> select clear
Grouped 2 regions
Drag select of 2555
Opened Bb-EXP-2.7A_imasked as #7, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> show #4.1 models
> hide #4.1 models
> hide #!7 models
> hide #!2 models
> show #!2 models
> hide #1.1 models
> hide #!2 models
> show #!2 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #4.1 models
> hide #4.1 models
> hide #!4 models
> show #4.1 models
> hide #4.1 models
> hide #!4 models
> show #!17 models
> hide #!17 models
> show #!15 models
> hide #!15 models
> show #!13 models
> hide #!13 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!7 models
> hide #!7 models
> show #1.1 models
> hide #1.1 models
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!3 models
> hide #!3 models
> hide #!1 models
> show #1.1 models
> hide #1.1 models
> show #!4 models
> hide #!4 models
> show #!3 models
> show #!2 models
> hide #!3 models
> hide #!1 models
Opened Bb-EXP-2.7A_imasked as #9, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!9 models
> show #!9 models
> hide #!2 models
> hide #!9 models
> show #!8 models
> hide #!8 models
> show #!9 models
> select add #9
192 models selected
> color sel gold target s
> select clear
> hide #!9 models
> show #!9 models
> show #!3 models
> show #!6 models
> select #9
2 models selected
> color sel yellow target s
> select clear
> show #!13 models
> show #!15 models
> show #!17 models
> show #5.1 models
> hide #5.1 models
> show #!4 models
> hide #!4 models
> show #!2 models
> hide #!2 models
> show #4.1 models
> hide #4.1 models
> hide #!4 models
> hide #!3 models
> show #!3 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!13 models
> show #!13 models
> hide #!15 models
> show #!15 models
> hide #!17 models
> show #!17 models
> show #5.1 models
> hide #5.1 models
> show #4.1 models
> hide #4.1 models
> show #4.1 models
> show #!7 models
> hide #!7 models
> hide #!3 models
> hide #!6 models
> hide #!9 models
> show #5.1 models
> select add #4
2 models selected
> select add #4.1
2 models selected
> select add #5
4 models selected
> select add #5.1
4 models selected
> select add #13
6 models selected
> select add #15
8 models selected
> select add #17
10 models selected
> view orient
[Repeated 1 time(s)]
> turn -x 90
[Repeated 1 time(s)]
> volume #4 region 0,0,0,127,64,127
> turn -x 90
[Repeated 4 time(s)]
> turn -y 90
[Repeated 3 time(s)]
> turn -x 180
[Repeated 2 time(s)]
> turn -x 90
[Repeated 1 time(s)]
> turn -y 90
[Repeated 3 time(s)]
> select clear
> show #!6 models
> show #!3 models
> show #!9 models
> volume #6 region 0,0,0,127,127,127
> select add #3
2 models selected
> select subtract #3
Nothing selected
> select clear
[Repeated 1 time(s)]
> select subtract #4
Nothing selected
> select add #4
2 models selected
> hide #!6 models
> hide #!9 models
> hide #!3 models
> view orient
[Repeated 1 time(s)]
> volume #4 region 0,63,0,127,127,127
> turn -y 90
[Repeated 3 time(s)]
> select clear
> show #!6 models
> show #!3 models
> show #!9 models
> show #!2 models
> hide #!2 models
> show #1.1 models
> hide #1.1 models
> show #!8 models
> hide #!8 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!9 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> show #!9 models
> close #7
> select clear
> select #5
2 models selected
> color sel orchid target s
> select clear
> view orient
[Repeated 2 time(s)]
> turn -y 90
[Repeated 4 time(s)]
> turn -x 90
[Repeated 4 time(s)]
> turn -y 90
[Repeated 3 time(s)]
> turn -z 90
> set bgColor white
> save /Users/jliu/Desktop/Export_appratus/Session/3A.cxs includeMaps true
No map chosen to save
[Repeated 1 time(s)]
> volume #6 region 0,0,0,127,127,127
> save /Users/jliu/Desktop/Export_appratus/Fig/3A.jpg width 1246 height 1210
> supersample 3
> save /Users/jliu/Desktop/Export_appratus/Fig/3A.jpg width 2000 height 1942
> supersample 3
> select #6
2 models selected
> transparency sel 50
> select clear
> select #3
2 models selected
> volume sel style surface
[Repeated 1 time(s)]
> transparency sel 0
> select clear
> hide #!3 models
> hide #!4 models
> hide #4.1 models
> hide #!5 models
> show #1.1 models
> hide #5.1 models
> hide #!6 models
> hide #!9 models
> hide #!13 models
> hide #!15 models
> hide #!17 models
> close #2
> save /Users/jliu/Desktop/Export_appratus/Session/3A.cxs includeMaps true
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
Drag select of 2523, 719 of 26560 triangles, 2549, 2891 of 21532 triangles,
2511, 1005 of 12692 triangles, 2440, 1645 of 11004 triangles, 2498, 3570 of
10600 triangles, 2536, 1262 of 11544 triangles, 2495, 3748 of 8656 triangles,
2483, 710 of 6348 triangles, 2535, 3756 of 6796 triangles, 2284, 1009 of 7380
triangles, 2315, 2979 of 7052 triangles, 2424, 484 of 5972 triangles, 1776,
1661 of 4112 triangles, 1534, 253 of 4024 triangles, 1 Bb-EXP-2.7A.mrc
> select clear
Drag select of 2540, 2316 of 21528 triangles, 2538, 3265 of 12568 triangles,
2513, 2452 of 11260 triangles, 2536, 654 of 11544 triangles, 2516, 921 of
12084 triangles, 2514, 3049 of 9880 triangles, 2546, 1786 of 9340 triangles,
2442, 4511 of 9160 triangles, 2529, 3910 of 8884 triangles, 2507, 1595 of 9588
triangles, 2469, 2983 of 8324 triangles, 2489, 120 of 9548 triangles, 2527,
1306 of 7948 triangles, 2508, 1079 of 8128 triangles, 2492, 169 of 9748
triangles, 2520, 1536 of 8180 triangles, 2532, 697 of 6768 triangles, 2510,
3080 of 7572 triangles, 2312, 221 of 7016 triangles, 2506, 132 of 6452
triangles, 2234, 377 of 5516 triangles, 2342, 1447 of 4732 triangles, 2301,
901 of 4676 triangles, 2324, 407 of 4736 triangles, 2400, 549 of 4668
triangles, 2305, 15 of 4052 triangles, 2232, 394 of 4092 triangles, 2070, 1313
of 3060 triangles, 2051, 66 of 2596 triangles, 948, 2146 of 2588 triangles,
2035, 979 of 2468 triangles, 2021, 2499 of 2560 triangles, 2002, 2147 of 2472
triangles, 2043, 1199 of 2284 triangles, 1 Bb-EXP-2.7A.mrc
Grouped 35 regions
Grouped 3 regions
Grouped 4 regions
Grouped 1 regions
Grouped 3 regions
> hide #!1 models
> close #2
> show #!1 models
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
> hide #!1 models
> hide #1.1 models
Grouped 9 regions
> select clear
Drag select of 2527, 476 of 10052 triangles, 2500, 182 of 9748 triangles,
2553, 398 of 8156 triangles, 2511, 439 of 7348 triangles, 2359, 354 of 5480
triangles, 2247, 264 of 5260 triangles, 2353, 573 of 5228 triangles, 2340, 436
of 4660 triangles, 2251, 376 of 4484 triangles
> select clear
Grouped 8 regions
Grouped 2 regions
Grouped 1 regions
Opened Bb-EXP-2.7A_imasked as #7, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!2 models
> hide #!7 models
> show #!7 models
> show #!2 models
> hide #!7 models
Drag select of 2488, 8086 of 10864 triangles, 2533, 7128 of 10748 triangles,
2535, 6745 of 10596 triangles, 2501, 7586 of 10648 triangles, 2505, 6702 of
10648 triangles, 2486, 8202 of 10660 triangles, 2487, 7077 of 10716 triangles,
2525, 8032 of 10644 triangles, 2485, 7465 of 10572 triangles, 2503, 234 of
12084 triangles, 2325, 2323, 2318, 2313, 1927, 1926, 1928, 1918, 1920
> select clear
Drag select of 2501, 1216 of 10648 triangles, 2505, 408 of 10648 triangles,
2486, 582 of 10660 triangles, 2487, 1019 of 10716 triangles, 2525, 1132 of
10644 triangles, 2325, 2323, 2318, 2313, 1927, 1926, 1928, 1918, 1920
Drag select of 2488, 1617 of 10864 triangles, 2533, 2487 of 10748 triangles,
2535, 2489 of 10596 triangles, 2485, 2054 of 10572 triangles
> select clear
Grouped 4 regions
Grouped 3 regions
Grouped 2 regions
[Repeated 2 time(s)]Opened Bb-EXP-2.7A_imasked as #11, grid size 128,128,128,
pixel 2.7, shown at step 1, values float32
> show #!8 models
> hide #!2 models
> hide #!11 models
> show #!11 models
> hide #!11 models
> show #!11 models
> hide #!8 models
> show #!7 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> select add #3
177 models selected
> select subtract #3
175 models selected
> select add #7
177 models selected
> select add #11
179 models selected
> select clear
> select add #2
177 models selected
> select subtract #2
Nothing selected
> select subtract #7
Nothing selected
> select add #7
2 models selected
> select #11
2 models selected
> select clear
Drag select of 18 Bb-EXP-2.7A_imasked
> color #7.1#11.1 orange
> hide #7.1 models
> show #7.1 models
> hide #!7 models
> show #!7 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> hide #!11 models
> show #!11 models
> show #4.1 models
> show #!6 models
> show #!9 models
> show #!13 models
> show #!15 models
> show #!17 models
> show #5.1 models
> select clear
> select #7
2 models selected
> transparency sel 50
> select clear
> volume #!4-7,9,11,13,15,17 showOutlineBox false
> open /Users/jliu/Desktop/Export_appratus/PDB/flhA-final-c9.pdb
Chain information for flhA-final-c9.pdb #12
---
Chain | Description
A B C D E F G H I | No description available
> show cartoons
> hide atoms
> save /Users/jliu/Desktop/Export_appratus/Session/3A.cxs includeMaps true
> select #15
2 models selected
> ui tool show "Color Actions"
> color sel medium aquamarine target s
> select clear
[Repeated 1 time(s)]
> hide #12 models
> select #6
2 models selected
> color #6.1#7.1 white
> ui tool show "Color Actions"
> color sel orange
> lighting flat
> lighting full
> lighting soft
> lighting simple
[Repeated 1 time(s)]
> select clear
> save /Users/jliu/Desktop/Export_appratus/Session/3A.cxs includeMaps true
> select clear
> select #6
2 models selected
> select clear
> select #6
2 models selected
> transparency #6.1#7.1 100
> select clear
> select #15
2 models selected
> surface hidePatches #13.1#15.1
> select clear
> open /Users/jliu/Desktop/Export_appratus/PDB/RBM2_RBM3&collar_x46.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/RBM2_RBM3&collar_x46.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA C 233
GLY C 258 1 26
Start residue of secondary structure not found: HELIX 2 2 THR C 405 GLY C 421
1 17
Start residue of secondary structure not found: SHEET 1 1 1 VAL C 262 ASP C
271 0
Start residue of secondary structure not found: SHEET 2 2 1 THR C 278 HIS C
281 0
Start residue of secondary structure not found: SHEET 3 3 1 LEU C 293 GLU C
302 0
4 messages similar to the above omitted
Chain information for RBM2_RBM3&collar_x46.pdb
---
Chain | Description
14.1/C 14.3/C 14.4/C 14.5/C 14.6/C 14.7/C 14.8/C 14.9/C 14.10/C 14.11/C
14.12/C 14.13/C 14.14/C 14.15/C 14.16/C 14.17/C 14.18/C 14.19/C 14.20/C
14.21/C 14.22/C 14.23/C 14.24/C 14.25/C 14.26/C 14.27/C 14.28/C 14.29/C
14.30/C 14.31/C 14.32/C 14.33/C 14.34/C 14.35/C 14.36/C 14.37/C 14.38/C
14.39/C 14.40/C 14.41/C 14.42/C 14.43/C 14.44/C 14.45/C 14.46/C 14.47/C | No
description available
14.2/Da 14.2/Db 14.2/Dc 14.2/Dd 14.2/Dp 14.2/Dq 14.2/Dr 14.2/Ds 14.2/Dt
14.2/Du 14.2/Dv 14.2/Dw | No description available
14.2/De | No description available
14.2/Df 14.2/Do | No description available
14.2/Dg 14.2/Dh 14.2/Di 14.2/Dj 14.2/Dk 14.2/Dl 14.2/Dm 14.2/Dn | No
description available
> hide #!14.1-47 cartoons
> show #!14.1-47 atoms
> select #14.2/Dq:218@CE1
1 atom, 1 residue, 1 model selected
> select add #14
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 95 models selected
> select subtract #14
Nothing selected
> select add #15
2 models selected
> select add #17
4 models selected
> select subtract #17
2 models selected
> select subtract #15
Nothing selected
> select add #14
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 95 models selected
> show sel cartoons
> hide sel cartoons
> hide sel atoms
> show sel cartoons
> hide sel cartoons
> show sel atoms
> style sel stick
Changed 70628 atom styles
> style sel sphere
Changed 70628 atom styles
> style sel stick
Changed 70628 atom styles
> select clear
> hide #!14 models
> hide #!13 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!13 models
> hide #!13 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!14 models
> select add #14
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 95 models selected
> show sel cartoons
> hide sel atoms
> select clear
> ui mousemode right "crop volume"
> volume #6 region 0,0,0,127,127,127
> set bgColor black
> volume #4 region 0,0,0,127,127,127
[Repeated 1 time(s)]
> ui mousemode right "crop volume"
> volume #4 region 0,0,0,127,127,127
> volume #4 region 0,0,0,123,127,127
> volume #4 region 0,0,0,118,127,127
> volume #4 region 0,0,0,116,127,127
> volume #!4-7,9,11,17 showOutlineBox true
> volume #4 region 0,0,0,116,127,127
[Repeated 1 time(s)]
> volume #4 region 0,0,0,127,127,127
[Repeated 4 time(s)]
> select #6
2 models selected
> hide #11.1 models
> hide #!11 models
> hide #7.1 models
> hide #!7 models
> hide #!6 models
> hide #!9 models
> show #12 models
> hide #12 models
> show #12 models
> hide #12 models
> show #!13 models
> show #!15 models
> volume #4 region 0,0,0,127,127,127
[Repeated 1 time(s)]
> view orient
> turn -z 90
[Repeated 2 time(s)]
> turn -x 90
[Repeated 1 time(s)]
> volume #4 region 62,0,0,127,127,127
> turn -x 90
[Repeated 2 time(s)]
> show #11.1 models
> show #!6 models
> show #7.1 models
> show #!9 models
> set bgColor white
> select clear
> volume #!4-7,9,11,13,15,17 showOutlineBox false
> hide #!14 models
> hide #!9 models
> open /Users/jliu/Desktop/Export_appratus/PDB/6s3l-exp.pdb
6s3l-exp.pdb title:
Structure of the core of the flagellar export apparatus from vibrio mimicus,
the flipqr-FLHB complex. [more info...]
Chain information for 6s3l-exp.pdb #16
---
Chain | Description
A | flagellar biosynthetic protein flip
B | flagellar biosynthetic protein flip
C | flagellar biosynthetic protein flip
D | flagellar biosynthetic protein flip
E | flagellar biosynthetic protein flip
F | flagellar biosynthetic protein flir
G H I J | flagellar biosynthetic protein fliq
K | flagellar biosynthetic protein FLHB
> hide #!6 models
> show #!6 models
> hide #7.1 models
> show #7.1 models
> hide #!7 models
> show #!7 models
> hide #!11 models
> show #!11 models
> color #16 #27e2ef transparency 0
> color #16 #ef5857 transparency 0
> color #16 #ef7f7f transparency 0
> select clear
> save /Users/jliu/Desktop/Export_appratus/Fig/3B.jpg width 2000 height 1942
> supersample 3
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> save /Users/jliu/Desktop/Export_appratus/Session/Fig3.cxs includeMaps true
——— End of log from Mon Oct 3 13:44:28 2022 ———
opened ChimeraX session
Showing Bb-EXP-2.7A.seg - 176 regions, 176 surfaces
> hide #!2 models
> show #!14 models
> select #13
2 models selected
> select clear
> select #13
2 models selected
> select #15
2 models selected
> transparency #13.1#15.1 50
> show #!10 models
> hide #!10 models
> show #!10 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> ui tool show "Color Actions"
> color sel medium sea green
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> select clear
> select add #8
2 models selected
> select add #10
4 models selected
> select add #11
6 models selected
> select subtract #11
4 models selected
> select add #10
4 models selected
> select add #10
4 models selected
> select clear
> select add #8
2 models selected
> select add #10
4 models selected
> ui tool show "Color Actions"
> color sel medium sea green
> select clear
> select add #8
2 models selected
> select add #10
4 models selected
> transparency #8.1#10.1 50
> select clear
[Repeated 1 time(s)]
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> view clip false
[Repeated 1 time(s)]
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> hide #!8 models
> hide #8.1 models
> hide #!10 models
> hide #10.1 models
> hide #!11 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> hide #16 models
> hide #!17 models
> show #!1 models
> show #1.1 models
> show #!2 models
> hide #!2 models
> color #1.1 #de424e transparency 0
> transparency #1 0
> color #1.1 white transparency 0
> ui tool show "Segment Map"
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
Drag select of 2535, 359 of 25860 triangles, 2521, 509 of 21840 triangles,
2487, 327 of 10644 triangles, 2512, 653 of 10832 triangles, 2511, 612 of 8108
triangles, 2540, 344 of 6936 triangles, 2243, 218 of 7428 triangles, 2534, 203
of 7184 triangles, 2529, 484 of 7184 triangles, 2381, 535 of 5220 triangles,
1536, 39 of 3836 triangles, 746, 584 of 2072 triangles, 1 Bb-EXP-2.7A.mrc
> hide #!1 models
> select clear
Drag select of 2501, 2549, 2485, 2535, 2520, 2513, 2538, 2525, 2521, 2492,
2488, 2496, 2515, 2516, 2429, 2431, 2446, 2500, 2523, 2510, 2524, 2445, 2522,
2519, 2517, 2507, 2505, 2491, 2526, 2487, 2494, 2514, 2512, 2506, 2509, 2490,
2432, 2444, 2508, 2493, 2497, 2486, 2469, 2552, 2499, 2511, 2495, 2498, 2504,
2527, 2503, 2489, 2540, 2551, 2518, 2541, 2437, 2279, 2536, 2550, 2280, 2502,
2265, 2243, 2532, 2435, 2272, 2534, 2270, 2238, 2276, 2529, 2528, 2455, 2543,
2351, 2531, 2451, 2548, 2533, 2405, 2537, 2530, 2345, 2450, 2475, 2482, 2365,
2333, 2381, 2235, 2328, 2377, 2326, 2331, 2213, 2385, 2339, 2091, 2539, 2393,
2553, 2273, 2240, 2394, 2239, 2244, 2288, 2353, 2269, 2254, 2294, 2275, 2390,
2087, 2337, 2330, 2324, 2078, 2134, 2397, 2271, 2274, 1512, 2347, 2387, 2255,
2396, 2228, 2395, 2379, 2378, 2398, 2249, 1537, 2263, 1525, 1532, 1531, 1604,
1974, 1535, 2181, 2079, 2190, 1534, 2064, 1536, 2187, 2136, 1816, 2119, 2113,
1810, 2116, 2123, 2127, 2126, 2115, 2362, 2131, 1558, 2077, 948, 1987, 2080,
1995, 1993, 1969, 2088, 1999, 2094, 1539, 2071, 2090, 746, 1544, 1593, 1547,
2258, 2277, 2285, 2290, 1786, 1785, 1787, 1781, 1778, 2545, 2544, 2546, 2547
> transparency #2.1-34,36-67,70-72,74-75,77-80,82,84-89,91-200 50
> show #!15 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> show #!14 models
Drag select of 2549, 6248 of 27040 triangles, 2485, 4311 of 26560 triangles,
2520, 10384 of 23360 triangles, 2513, 1034 of 23288 triangles, 2538, 8419 of
21528 triangles, 2525, 3371 of 21532 triangles, 2492, 771 of 12692 triangles,
2488, 3487 of 12652 triangles, 2515, 6996 of 12568 triangles, 2445, 5791 of
10620 triangles, 2512, 2572 of 10832 triangles, 2506, 5715 of 12084 triangles,
2509, 1055 of 9880 triangles, 2490, 5833 of 9340 triangles, 2493, 380 of 9588
triangles, 2497, 606 of 10052 triangles, 2552, 1457 of 9548 triangles, 2499,
664 of 7948 triangles, 2495, 6175 of 8128 triangles, 2498, 4543 of 9748
triangles, 2504, 369 of 8204 triangles, 2527, 776 of 7552 triangles, 2503,
4868 of 7572 triangles, 2489, 5712 of 8156 triangles, 2551, 3351 of 8180
triangles, 2518, 612 of 8580 triangles, 2550, 3776 of 6768 triangles, 2280,
370 of 7400 triangles, 2502, 2236 of 7348 triangles, 2532, 4848 of 7572
triangles, 2270, 3627 of 6932 triangles, 2528, 902 of 7164 triangles, 2531,
648 of 6712 triangles, 2451, 54 of 6644 triangles, 2533, 3572 of 6604
triangles, 2530, 3726 of 6452 triangles, 2333, 3820 of 5484 triangles, 2235,
3501 of 5516 triangles, 2326, 3721 of 5260 triangles, 2331, 2146 of 5404
triangles, 2553, 996 of 4664 triangles, 2273, 7 of 4704 triangles, 2240, 108
of 4732 triangles, 2288, 918 of 4716 triangles, 2254, 441 of 4728 triangles,
2294, 969 of 4708 triangles, 2324, 1318 of 4484 triangles, 2271, 276 of 4172
triangles, 2347, 199 of 4256 triangles, 2228, 2931 of 4096 triangles, 2379,
203 of 4096 triangles, 2116, 2762 of 3108 triangles, 2362, 550 of 3404
triangles, 2077, 2457 of 2596 triangles, 948, 473 of 2588 triangles, 1987, 655
of 2468 triangles, 2080, 2206 of 2536 triangles, 1995, 50 of 2560 triangles,
1993, 1337 of 2448 triangles, 1969, 157 of 2472 triangles, 2088, 1463 of 2324
triangles, 1999, 1605 of 2284 triangles, 2546, 158 of 312 triangles, 672
residues, 3 pseudobonds
> select clear
Grouped 7 regions
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
> ui mousemode right "crop volume"
> view orient
> turn -x 90
[Repeated 1 time(s)]
> ui mousemode right "crop volume"
> ui mousemode right "move planes"
> ui mousemode right "crop volume"
[Repeated 3 time(s)]
> select clear
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!14 models
> show #12 models
> hide #12 models
> show #!13 models
> hide #!13 models
> select clear
[Repeated 1 time(s)]Drag select of 2492, 2488, 2496, 2515, 2516, 2429, 2431,
2446, 2500, 2523, 2510, 2524, 2445, 2522, 2519, 2517, 2507, 2505, 2491, 2526,
2487, 2494, 2514, 2512, 2506, 2509, 2490, 2432, 2444, 2508, 2493, 2497, 2486,
2469, 2552, 2499, 2511, 2495, 2498, 2504, 2527, 2503, 2489, 2540, 2551, 2518,
2541, 2437, 2279, 2536, 2550, 2280, 2502, 2265, 2243, 2532, 2435, 2272, 2534,
2270, 2238, 2276, 2529, 2528, 2455, 2543, 2351, 2531, 2451, 2548, 2533, 2405,
2537, 2530, 2345, 2450, 2475, 2482, 2365, 2333, 2381, 2235, 2328, 2377, 2326,
2331, 2213, 2385, 2339, 2091, 2539, 2393, 2553, 2273, 2240, 2394, 2239, 2244,
2288, 2353, 2269, 2254, 2294, 2275, 2390, 2087, 2337, 2330, 2324, 2078, 2134,
2397, 2271, 2274, 1512, 2347, 2387, 2255, 2396, 2228, 2395, 2379, 2378, 2398,
2249, 1537, 2263, 1525, 1532, 1531, 1604, 1974, 1535, 2181, 2079, 2190, 1534,
2064, 1536, 2187, 2136, 1816, 2119, 2113, 1810, 2116, 2123, 2127, 2126, 2115,
2362, 2131, 1558, 2077, 948, 1987, 2080, 1995, 1993, 1969, 2088, 1999, 2094,
1539, 2071, 2090, 746, 1544, 1593, 1547, 2258, 2277, 2285, 2290, 1786, 1785,
1787, 1781, 1778, 2545, 2544, 2546, 2547, 9197 residues, 92 pseudobonds
> transparency (#!14.1-47 & sel) 30
> select clear
Drag select of 2492, 2488, 2496, 2515, 2516, 2429, 2431, 2446, 2500, 2523,
2510, 2524, 2445, 2522, 2519, 2517, 2507, 2505, 2491, 2526, 2487, 2494, 2514,
2512, 2506, 2509, 2490, 2432, 2444, 2508, 2493, 2497, 2486, 2469, 2552, 2499,
2511, 2495, 2498, 2504, 2527, 2503, 2489, 2540, 2551, 2518, 2541, 2437, 2279,
2536, 2550, 2280, 2502, 2265, 2243, 2532, 2435, 2272, 2534, 2270, 2238, 2276,
2529, 2528, 2455, 2543, 2351, 2531, 2451, 2548, 2533, 2405, 2537, 2530, 2345,
2450, 2475, 2482, 2365, 2333, 2381, 2235, 2328, 2377, 2326, 2331, 2213, 2385,
2339, 2091, 2539, 2393, 2553, 2273, 2240, 2394, 2239, 2244, 2288, 2353, 2269,
2254, 2294, 2275, 2390, 2087, 2337, 2330, 2324, 2078, 2134, 2397, 2271, 2274,
1512, 2347, 2387, 2255, 2396, 2228, 2395, 2379, 2378, 2398, 2249, 1537, 2263,
1525, 1532, 1531, 1604, 1974, 1535, 2181, 2079, 2190, 1534, 2064, 1536, 2187,
2136, 1816, 2119, 2113, 1810, 2116, 2123, 2127, 2126, 2115, 2362, 2131, 1558,
2077, 948, 1987, 2080, 1995, 1993, 1969, 2088, 1999, 2094, 1539, 2071, 2090,
746, 1544, 1593, 1547, 2258, 2277, 2285, 2290, 1786, 1785, 1787, 1781, 1778,
2545, 2544, 2546, 2547, 9197 residues, 92 pseudobonds
> transparency (#!14.1-47 & sel) 20
> select clear
[Repeated 2 time(s)]
> transparency #14#2.10-34,36-67,70-72,74-75,77-80,82,84-89,91-200#!2 20
> ui mousemode right "crop volume"
> set bgColor black
> set bgColor transparent
> view orient
> ui mousemode right "crop volume"
[Repeated 20 time(s)]
> show #!1 models
> volume #1 region 0,64,0,127,127,127
> select clear
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #1.1 models
> show #1.1 models
> hide #1.1 models
> show #1.1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #1.1 models
> show #1.1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
Grouped 22 regions
Opened Bb-EXP-2.7A_imasked as #18, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!2 models
> hide #1.1 models
> hide #!1 models
> hide #!18 models
> show #!18 models
> volume #18 region 0,64,0,127,127,121
> color #18 #e4e4e4 models transparency 0
> select clear
> select add #18
2 models selected
> color #18.1 gray
> select clear
> show #!17 models
> hide #!17 models
> show #!17 models
> show #!1 models
> hide #!1 models
> volume #17 region 62,0,0,127,127,127
> volume #17 region 0,0,0,127,127,127
> show #!1 models
> show #1.1 models
> show #!2 models
> show #!3 models
> show #!5 models
> show #!6 models
> show #!4 models
> show #!7 models
> show #!8 models
> show #8.1 models
> show #!11 models
> show #12 models
> show #!13 models
> show #!15 models
> show #16 models
> show #10.1 models
> show #!9 models
> volume #4 region 0,0,0,127,127,127
> hide #!18 models
> show #!18 models
> hide #!1 models
> hide #!2 models
> hide #1.1 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> hide #18.1 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #18.1 models
> hide #18.1 models
> select #17
2 models selected
> select clear
> select #15
2 models selected
> show #18.1 models
> hide #18.1 models
> show #18.1 models
> hide #18.1 models
> show #18.1 models
> select clear
> select #13
2 models selected
> hide #!13 models
> show #!13 models
> hide #!13 models
> show #!13 models
> select clear
> close #18
> select #15
2 models selected
> select clear
> select #13
2 models selected
> hide #!17 models
> hide #16 models
> hide #!15 models
> hide #!14 models
> hide #12 models
> hide #!11 models
> hide #10.1 models
> hide #!10 models
> hide #!9 models
> hide #8.1 models
> hide #!8 models
> hide #!7 models
> hide #!6 models
> hide #!5 models
> hide #!4 models
> hide #!3 models
> show #!15 models
> hide #!15 models
> show #!14 models
> select clear
> select #13
2 models selected
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 200 regions.
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
> close #2
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked, density threshold
0.200000
Showing 41 region surfaces
97 watershed regions, grouped to 41 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked.seg - 41 regions, 41
surfaces
Grouped 23 regions
> select clear
[Repeated 1 time(s)]Opened Bb-
EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #18, grid size
128,128,128, pixel 2.7, shown at step 1, values float32
> hide #!14 models
> hide #!13 models
> show #!13 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!2 models
> show #!2 models
> hide #!18 models
> hide #!2 models
> show #!18 models
> hide #!13 models
> show #!13 models
> select #14.35/C:406
5 atoms, 4 bonds, 1 residue, 1 model selected
> select add #18
5 atoms, 4 bonds, 1 residue, 3 models selected
Please select one ore more regions
[Repeated 1 time(s)]
> show #!17 models
> hide #!17 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!14 models
> hide #!18 models
> show #!18 models
> show #!14 models
> volume #13 region 0,0,0,127,127,127
> hide #!18 models
> show #!18 models
> hide #!14 models
> hide #!13 models
> show #!13 models
> hide #!18 models
> show #!18 models
> hide #!13 models
> show #!13 models
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked, density threshold
0.200000
Showing 41 region surfaces
97 watershed regions, grouped to 41 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked.seg - 41 regions, 41
surfaces
Grouped 17 regions
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked as #19, grid
size 128,128,128, pixel 2.7, shown at step 1, values float32
> hide #!19 models
> show #!19 models
> hide #!2 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> hide #!13 models
> show #!18 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> hide #!18 models
> show #!19 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!19 models
> color #19 #3cb37180 models
[Repeated 1 time(s)]
> select add #19
26 models selected
> show #!19 models
> hide #!18 models
> hide #!19 models
> show #!18 models
> select add #18
28 models selected
> select subtract #19
26 models selected
> color #18.1 gray
> select clear
> hide #!18 models
> show #!18 models
> show #!19 models
> hide #!19 models
> hide #!18 models
> show #!17 models
> hide #!17 models
> show #!5 models
> select #5
2 models selected
> hide #!1 models
> hide #1.1 models
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 14 region surfaces
111 watershed regions, grouped to 14 regions
Showing Bb-EXP-2.seg - 14 regions, 14 surfaces
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 14 region surfaces
111 watershed regions, grouped to 14 regions
Showing Bb-EXP-2.seg - 14 regions, 14 surfaces
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 14 region surfaces
111 watershed regions, grouped to 14 regions
Showing Bb-EXP-2.seg - 14 regions, 14 surfaces
> select clear
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 14 region surfaces
111 watershed regions, grouped to 14 regions
Showing Bb-EXP-2.seg - 14 regions, 14 surfaces
> show #!14 models
Drag select of 152, 160, 154, 153, 151, 158, 159, 155, 132, 156, 157, 149, 12,
4, 5 Bb-EXP-2.7A_imasked , 5998 residues, 45 pseudobonds
> transparency (#!14.2-47 & sel) 20
> select clear
Drag select of 152, 4016 of 9872 triangles, 160, 6353 of 9876 triangles, 154,
2412 of 8728 triangles, 153, 2522 of 9044 triangles, 151, 5154 of 8904
triangles, 158, 4590 of 8936 triangles, 159, 3559 of 8732 triangles, 155, 3823
of 8192 triangles, 132, 3111 of 6432 triangles, 156, 157, 2843 of 3684
triangles, 149, 2886 of 3144 triangles, 12, 1422 of 2008 triangles, 4, 5 Bb-
EXP-2.7A_imasked , 200 residues
> transparency (#!14.2 & sel) 80
> select clear
> select add #2
15 models selected
> transparency #2 90
> select clear
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> close #2
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 14 region surfaces
111 watershed regions, grouped to 14 regions
Showing Bb-EXP-2.seg - 14 regions, 14 surfaces
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 111 region surfaces
111 watershed regions, grouped to 111 regions
Showing Bb-EXP-2.seg - 111 regions, 111 surfaces
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 111 region surfaces
111 watershed regions, grouped to 111 regions
Showing Bb-EXP-2.seg - 111 regions, 111 surfaces
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Only showing 100 of 111 regions.
Showing 100 of 111 region surfaces
111 watershed regions, grouped to 111 regions
Showing Bb-EXP-2.seg - 111 regions, 100 surfaces
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 36 region surfaces
111 watershed regions, grouped to 36 regions
Showing Bb-EXP-2.seg - 36 regions, 36 surfaces
> select clear
Drag select of 144, 1191 of 3336 triangles, 134, 1267 of 3172 triangles, 15,
1053 of 2524 triangles, 132, 892 of 2556 triangles, 113, 902 of 2516
triangles, 131, 959 of 2528 triangles, 114, 914 of 2520 triangles, 130, 843 of
2496 triangles, 133, 866 of 2484 triangles, 6, 779 of 2152 triangles, 13, 721
of 2032 triangles, 9, 714 of 2080 triangles, 30, 725 of 2096 triangles, 20,
732 of 2072 triangles, 21, 687 of 2040 triangles, 2, 820 of 2072 triangles, 1,
855 of 2148 triangles, 3, 922 of 1996 triangles, 12, 800 of 2008 triangles, 4,
814 of 2144 triangles, 19, 526 of 2020 triangles, 10, 789 of 2036 triangles,
35, 503 of 1940 triangles, 11, 844 of 1956 triangles, 7, 727 of 1964
triangles, 31, 697 of 1328 triangles, 5 Bb-EXP-2.7A_imasked
Grouped 26 regions
Opened Bb-EXP-2_imasked as #20, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
Opened Bb-EXP-2_imasked as #21, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!20 models
> show #!20 models
> hide #!2 models
> show #!2 models
> hide #!5 models
> hide #5.1 models
> hide #!14 models
> show #!14 models
> hide #!20 models
> hide #!21 models
> select clear
> hide #!2 models
> show #!20 models
> show #!21 models
> select clear
> select #21
2 models selected
> color #21.1 gray
> select clear
> hide #!20 models
> hide #!21 models
> show #!21 models
> hide #!21 models
> hide #!14 models
> show #!14 models
> show #!15 models
> select #15
2 models selected
Segmenting Bb-EXP-2.7A_imasked, density threshold 0.200000
Showing 36 region surfaces
111 watershed regions, grouped to 36 regions
Showing Bb-EXP-2.seg - 36 regions, 36 surfaces
> close #2
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 62 region surfaces
243 watershed regions, grouped to 62 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 62
regions, 62 surfaces
> hide #!2 models
> show #!2 models
> hide #!14 models
> hide #!15 models
> show #!14 models
> show #!13 models
> hide #!13 models
> select subtract #15
Nothing selected
> select add #2
63 models selected
> transparency #2 70
> ui mousemode right "crop volume"
> select clear
> close #2
> show #!15 models
> hide #!14 models
> show #!14 models
> select #15
2 models selected
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Only showing 100 of 243 regions.
Showing 100 of 243 region surfaces
243 watershed regions, grouped to 243 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 243
regions, 100 surfaces
> select clear
> select add #2
101 models selected
> transparency #2 80
> close #2
> select #15
2 models selected
> select #14.2/Ds:129
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #14.8/C:298
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
84 atoms, 83 bonds, 10 residues, 1 model selected
> select up
571 atoms, 577 bonds, 73 residues, 1 model selected
> select up
595 atoms, 601 bonds, 76 residues, 1 model selected
> select up
898 atoms, 907 bonds, 113 residues, 1 model selected
> select up
921 atoms, 930 bonds, 116 residues, 1 model selected
> select up
1185 atoms, 1197 bonds, 150 residues, 1 model selected
> select up
70628 atoms, 71401 bonds, 9197 residues, 47 models selected
> select up
70628 atoms, 71401 bonds, 9197 residues, 48 models selected
> select up
184332 atoms, 186168 bonds, 17238 residues, 84 models selected
> select up
184332 atoms, 186168 bonds, 17238 residues, 84 models selected
> select up
184332 atoms, 186168 bonds, 17238 residues, 84 models selected
> select up
184332 atoms, 186168 bonds, 17238 residues, 84 models selected
> select down
70628 atoms, 71401 bonds, 9197 residues, 48 models selected
No segmentation chosen
No segmentation selected
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 395, in _segment
self.Segment()
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 2129, in Segment
smod = self.SegmentAndGroup(show, group)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 2164, in SegmentAndGroup
self.SetSurfaceGranularity(smod)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 1306, in
SetSurfaceGranularity
res = self._surface_granularity.value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '0.5'
Populating font family aliases took 327 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.
ValueError: invalid literal for int() with base 10: '0.5'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
See log for complete Python traceback.
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 0
regions, 0 surfaces
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Only showing 100 of 243 regions.
Showing 100 of 243 region surfaces
243 watershed regions, grouped to 243 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 243
regions, 100 surfaces
> close #2
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 15 region surfaces
243 watershed regions, grouped to 15 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 15
regions, 15 surfaces
> close #2
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Only showing 100 of 243 regions.
Showing 100 of 243 region surfaces
243 watershed regions, grouped to 243 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 243
regions, 100 surfaces
> close #2
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 243 region surfaces
243 watershed regions, grouped to 243 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 243
regions, 243 surfaces
> close #2
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 243 region surfaces
243 watershed regions, grouped to 243 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 243
regions, 243 surfaces
> select add #2
70628 atoms, 71401 bonds, 9197 residues, 292 models selected
> transparency (#!14.1-47 & sel) 50
[Repeated 1 time(s)]
> transparency (#!14.1-47 & sel) 90
> select clear
> select add #2
244 models selected
> transparency #2 100
> transparency #2 80
> transparency #2 50
> close #2
> show #!1 models
> hide #!1 models
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 243 region surfaces
243 watershed regions, grouped to 243 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 243
regions, 243 surfaces
> select add #2
244 models selected
> transparency #2 50
> select clear
> select add #2
244 models selected
> transparency #2 0
> select clear
Grouped 15 regions
Grouped 10 regions
Grouped 2 regions
Grouped 6 regions
Grouped 9 regions
[Repeated 1 time(s)]Grouped 15 regions
Grouped 2 regions
[Repeated 1 time(s)]Grouped 8 regions
Grouped 3 regions
[Repeated 1 time(s)]Grouped 2 regions
Grouped 5 regions
Grouped 3 regions
[Repeated 1 time(s)]Grouped 2 regions
Grouped 4 regions
Grouped 2 regions
Grouped 6 regions
Grouped 3 regions
> select clear
> select add #2
151 models selected
> transparency #2 60
> select clear
[Repeated 1 time(s)]
> transparency #2.19 20
> select clear
> select #14.13/C:425
9 atoms, 8 bonds, 1 residue, 1 model selected
> select clear
[Repeated 1 time(s)]
> close #2
> show #!1 models
> show #1.1 models
> hide #1.1 models
> hide #!1 models
> select add #15
2 models selected
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 243 region surfaces
243 watershed regions, grouped to 243 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 243
regions, 243 surfaces
> volume #15 region 0,8,0,127,127,127
> volume #15 region 0,11,0,127,127,127
> select add #2
246 models selected
> transparency #2#15.1 50
> select add #14.32/C:236
9 atoms, 8 bonds, 1 residue, 15 models selected
> select add #14.30/C:272
20 atoms, 19 bonds, 2 residues, 19 models selected
> select add #2
20 atoms, 19 bonds, 2 residues, 246 models selected
> transparency (#!14.30,32 & sel) 30
> transparency (#!14.30,32 & sel) 0
> select clear
> select add #2
244 models selected
> transparency #2 20
> select clear
[Repeated 1 time(s)]Grouped 43 regions
Grouped 2 regions
[Repeated 2 time(s)]Grouped 3 regions
Grouped 4 regions
Grouped 2 regions
[Repeated 4 time(s)]
> hide #!14 models
Grouped 2 regions
[Repeated 3 time(s)]Grouped 10 regions
Grouped 5 regions
Grouped 4 regions
Grouped 3 regions
Grouped 5 regions
Grouped 2 regions
[Repeated 9 time(s)]
> select clear
[Repeated 1 time(s)]Ungrouped to 2 regions
[Repeated 1 time(s)]
> select clear
> transparency #2.30 0
> select clear
Ungrouped to 2 regions
[Repeated 2 time(s)]
> select clear
Grouped 1 regions
> select clear
[Repeated 1 time(s)]Grouped 2 regions
> select clear
[Repeated 1 time(s)]Grouped 2 regions
> select clear
Grouped 3 regions
> select clear
Grouped 4 regions
> select clear
Ungrouped to 4 regions
Ungrouped to 3 regions
Ungrouped to 2 regions
[Repeated 1 time(s)]
> select clear
Grouped 7 regions
> select clear
Ungrouped to 7 regions
> select clear
Grouped 3 regions
Ungrouped to 3 regions
> select clear
> show #!14 models
Grouped 5 regions
Grouped 4 regions
Grouped 2 regions
[Repeated 1 time(s)]
> select clear
Ungrouped to 2 regions
[Repeated 1 time(s)]Ungrouped to 4 regions
Ungrouped to 5 regions
Ungrouped to 1 regions
Grouped 2 regions
Ungrouped to 2 regions
[Repeated 5 time(s)]Ungrouped to 5 regions
Ungrouped to 3 regions
Ungrouped to 4 regions
Ungrouped to 5 regions
Ungrouped to 10 regions
> select clear
[Repeated 1 time(s)]Grouped 5 regions
Grouped 3 regions
Grouped 2 regions
[Repeated 2 time(s)]Grouped 8 regions
Grouped 4 regions
Grouped 2 regions
[Repeated 2 time(s)]
> select clear
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 141 region surfaces
243 watershed regions, grouped to 141 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 141
regions, 141 surfaces
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 141 region surfaces
243 watershed regions, grouped to 141 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 141
regions, 141 surfaces
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 395, in _segment
self.Segment()
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 2129, in Segment
smod = self.SegmentAndGroup(show, group)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 2181, in SegmentAndGroup
self.GroupByCons ( smod, task )
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 2335, in GroupByCons
numit = self._num_steps_con.value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '0.5'
ValueError: invalid literal for int() with base 10: '0.5'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
See log for complete Python traceback.
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 243
regions, 0 surfaces
> hide #2 models
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 395, in _segment
self.Segment()
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 2129, in Segment
smod = self.SegmentAndGroup(show, group)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 2181, in SegmentAndGroup
self.GroupByCons ( smod, task )
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 2335, in GroupByCons
numit = self._num_steps_con.value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '0.1'
ValueError: invalid literal for int() with base 10: '0.1'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
See log for complete Python traceback.
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 243
regions, 0 surfaces
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 141 region surfaces
243 watershed regions, grouped to 141 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 141
regions, 141 surfaces
Grouped 32 regions
Grouped 3 regions
Grouped 2 regions
[Repeated 4 time(s)]Grouped 3 regions
[Repeated 1 time(s)]Grouped 2 regions
[Repeated 3 time(s)]Grouped 3 regions
Grouped 2 regions
[Repeated 6 time(s)]Segmenting Bb-
EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density threshold
0.200000
Showing 141 region surfaces
243 watershed regions, grouped to 141 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 141
regions, 141 surfaces
Got 86 regions after grouping by connections
Got 53 regions after grouping by connections
Got 31 regions after grouping by connections
Ungrouped to 46 regions
Ungrouped to 76 regions
Drag select of 230, 421 of 820 triangles, 213, 210 of 1072 triangles, 197, 304
of 1096 triangles, 372, 1053 of 4112 triangles, 232, 738 of 1136 triangles,
366, 844 of 4464 triangles, 360, 461 of 3388 triangles, 378, 229 of 2512
triangles, 369, 314 of 3496 triangles, 361, 6 of 3444 triangles, 307, 437 of
1776 triangles, 15 Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked ,
3847 residues, 38 pseudobonds
Grouped 11 regions
Grouped 7 regions
[Repeated 1 time(s)]
> select clear
> select add #14.37/C:426
11 atoms, 10 bonds, 1 residue, 4 models selected
Grouped 3 regions
Grouped 2 regions
[Repeated 2 time(s)]Grouped 4 regions
Grouped 3 regions
Grouped 2 regions
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> select clear
Grouped 2 regions
> select clear
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#22, grid size 128,128,128, pixel 2.7, shown at step 1, values float32
> hide #!22 models
> show #!22 models
> hide #!2 models
> hide #!14 models
> hide #!15 models
> show #!15 models
> show #!2 models
Opened Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
#23, grid size 128,128,128, pixel 2.7, shown at step 1, values float32
> hide #!22 models
> hide #!23 models
> show #!22 models
> show #!23 models
> hide #!15 models
> show #!15 models
> hide #!2 models
> hide #!22 models
> show #!22 models
> hide #!22 models
> hide #!15 models
> show #!22 models
> hide #!23 models
> hide #!22 models
> show #!23 models
> show #!22 models
> hide #!22 models
> hide #!23 models
> show #!22 models
> hide #!22 models
> show #!23 models
> color #23 #3cb37180 models
[Repeated 1 time(s)]
> select add #23
3 models selected
> color #23.1 gray
> color #22 #3cb37180 models
> select clear
> show #!22 models
> hide #!23 models
> show #!20 models
> show #!19 models
> show #16 models
> hide #16 models
> show #!14 models
> show #!15 models
> hide #!15 models
> show #10.1 models
> show #!11 models
> hide #!11 models
> show #!9 models
> hide #!9 models
> show #8.1 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #!8 models
> show #!8 models
> hide #8.1 models
> show #!9 models
> hide #!9 models
> show #8.1 models
> hide #!10 models
> hide #10.1 models
> show #10.1 models
> hide #!8 models
> hide #8.1 models
> hide #!10 models
> show #!10 models
> show #!9 models
> show #!8 models
> show #8.1 models
> hide #!9 models
> volume #8 region 0,0,0,127,127,127
> show #16 models
> hide #10.1 models
> hide #!10 models
> hide #8.1 models
> hide #!19 models
> hide #!20 models
> hide #!22 models
> show #8.1 models
> hide #8.1 models
> show #!9 models
> show #10.1 models
> hide #10.1 models
> show #10.1 models
> volume #10 region 0,0,0,127,127,127
> show #8.1 models
> hide #8.1 models
> show #8.1 models
> save /Users/jliu/Desktop/Export_appratus/Session/Fig3.cxs includeMaps true
> volume #8 region 0,0,0,127,127,127
> show #12 models
> hide #12 models
> show #12 models
> hide #12 models
> show #!15 models
> hide #!15 models
> show #!22 models
> show #!19 models
> volume #8 region 0,0,0,127,127,127
[Repeated 4 time(s)]
> volume #8 region 0,0,0,104,127,127
> volume #8 region 0,0,0,127,127,127
[Repeated 1 time(s)]
> ui mousemode right "crop volume"
[Repeated 1 time(s)]
> save /Users/jliu/Desktop/Export_appratus/Session/Fig3.cxs includeMaps true
> view orient
> turn -x 90
> hide #10.1 models
> hide #8.1 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> show #!10 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> hide #!22 models
> hide #!19 models
> hide #!10 models
> show #!10 models
> show #10.1 models
> hide #10.1 models
> show #10.1 models
> hide #10.1 models
> hide #!10 models
> hide #16 cartoons
> show #16 atoms
> select add #16
13849 atoms, 14138 bonds, 1768 residues, 1 model selected
> hide sel cartoons
> show sel atoms
> hide sel atoms
[Repeated 1 time(s)]
> show sel atoms
> show sel cartoons
> hide sel atoms
Fetching compressed palette hydrophobicity from
http://www.colourlovers.com/api/palettes?keywords=hydrophobicity&format=json&numResults=100
Could not find palette hydrophobicity at COLOURlovers.com using keyword search
Fetching compressed palette hydrophobic from
http://www.colourlovers.com/api/palettes?keywords=hydrophobic&format=json&numResults=100
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic blue-white-red range -20,20
Expected a keyword
> hydrophobic blue-white-red range -20,20
Unknown command: palette hydrophobic blue-white-red range -20,20
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic blue-white-red range -20,20
Expected a keyword
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic blue-white-red range -20,20
Expected a keyword
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
> set bgColor white
> set bgColor #ffffff00
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic range -20,20
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic range -20,20
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic range -60,-20
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic range 20,60
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic range 0,60
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic range -60,60
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic range -100,60
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic range 0,20
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
> mlp palette red-white-blue hydrophobic range 0,20
Expected a keyword
> mlp palette rainbow hydrophobic
Expected a keyword
Fetching compressed palette patel2-4 from
http://www.colourlovers.com/api/palettes?keywords=patel2-4&format=json&numResults=100
Could not find palette patel2-4 at COLOURlovers.com using keyword search
> mlp palette pastel2-4 hydrophobic
Expected a keyword
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp palette hydrophobic range 20,60
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.87, mean -6.111, maximum 23.21
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.196, maximum 22.84
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.01, mean -6.183, maximum 22.59
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.194, maximum 22.9
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.85, mean -6.234, maximum 22.77
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.204, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.31, mean -6.205, maximum 23.79
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.14, mean -6.162, maximum 23.76
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.217, maximum 22.83
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.61, mean -6.157, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.49, mean -6.165, maximum 23.93
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.212, maximum 23.19
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.51, mean -6.174, maximum 23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.15, mean -6.172, maximum 23.7
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.59, mean -6.161, maximum 23.31
Map values for surface "RBM2_RBM3&collar_x46.pdb_Da SES surface": minimum
-24.99, mean -6.409, maximum 22.06
Map values for surface "RBM2_RBM3&collar_x46.pdb_Db SES surface": minimum
-23.79, mean -6.375, maximum 21.88
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dc SES surface": minimum
-24.39, mean -6.303, maximum 22.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dd SES surface": minimum
-24.19, mean -6.259, maximum 21.69
Map values for surface "RBM2_RBM3&collar_x46.pdb_De SES surface": minimum
-25.18, mean -5.892, maximum 22.51
Map values for surface "RBM2_RBM3&collar_x46.pdb_Df SES surface": minimum
-23.64, mean -5.968, maximum 21.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dg SES surface": minimum
-24.3, mean -5.537, maximum 22.11
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dh SES surface": minimum
-24.17, mean -5.484, maximum 22.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Di SES surface": minimum
-24.14, mean -5.487, maximum 22.34
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dj SES surface": minimum
-24.21, mean -5.622, maximum 21.08
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dk SES surface": minimum
-24.57, mean -5.631, maximum 21.8
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dl SES surface": minimum
-24.31, mean -5.488, maximum 22.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dm SES surface": minimum
-24.86, mean -5.525, maximum 22.07
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dn SES surface": minimum
-23.61, mean -5.432, maximum 21.98
Map values for surface "RBM2_RBM3&collar_x46.pdb_Do SES surface": minimum
-24.39, mean -6.013, maximum 21.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dp SES surface": minimum
-24.5, mean -6.2, maximum 22.92
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dq SES surface": minimum
-24.13, mean -6.194, maximum 22.3
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dr SES surface": minimum
-24.02, mean -6.166, maximum 21.71
Map values for surface "RBM2_RBM3&collar_x46.pdb_Ds SES surface": minimum
-24.34, mean -6.191, maximum 23.14
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dt SES surface": minimum
-24.03, mean -6.132, maximum 21.78
Map values for surface "RBM2_RBM3&collar_x46.pdb_Du SES surface": minimum
-24.37, mean -6.323, maximum 22.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dv SES surface": minimum
-23.77, mean -6.362, maximum 21.2
Map values for surface "RBM2_RBM3&collar_x46.pdb_Dw SES surface": minimum
-24.71, mean -6.222, maximum 22.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.68, mean -6.061, maximum 24.27
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.24, mean -6.149, maximum 23.03
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.37, mean -6.098, maximum 24.64
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.69, mean -6.21, maximum 23.31
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.17, mean -6.2, maximum 23.42
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.65, mean -6.09, maximum 24.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.38, mean -6.171, maximum 23.63
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.179, maximum 24.26
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.7, mean -6.068, maximum 24.39
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.2, mean -6.208, maximum 23.38
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.79, mean -6.104, maximum 24.23
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.64, mean -6.192, maximum 23.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.16, mean -6.185, maximum 23.73
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.74, mean -6.187, maximum 24.16
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.73, mean -6.235, maximum 23.75
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.57, mean -6.194, maximum 24.02
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.71, mean -6.167, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.41, mean -6.117, maximum 24.4
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-27.16, mean -6.186, maximum 23.82
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.96, mean -6.198, maximum 24.12
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.83, mean -6.201, maximum 22.87
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.48, mean -6.177, maximum 23.41
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.88, mean -6.222, maximum 23.68
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.11, mean -6.234, maximum 23.18
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.92, mean -6.165, maximum 23.58
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.93, mean -6.167, maximum 23.55
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.5, mean -6.207, maximum 23.05
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.44, mean -6.216, maximum 23.86
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.99, mean -6.226, maximum 23.22
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-26.81, mean -6.179, maximum 23.35
Map values for surface "RBM2_RBM3&collar_x46.pdb_C SES surface": minimum
-25.68, mean -6.201, maximum 22.65
> mlp palette rainbow hydrophobic range 20,60
Expected a keyword
Fetching compressed palette 92095 from
http://www.colourlovers.com/api/palette/92095?format=json
> mlp palette 92095 hydrophobic range 20,60
Expected a keyword
> mlp palette 92095 hydrophobic
Expected a keyword
> mlp #16 palette 92095 hydrophobic
Expected a keyword
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp #16 palette hydrophobic 92095
Expected a keyword
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp #16 palette hydrophobic
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
> hide #16.1 models
> show #16.1 models
> hide #16.1 models
> show #16.1 models
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp #16 palette hydrophobic blue-white-red range -20,20
Expected a keyword
Found 2 ColourLover palettes with name "hydrophobic", using palette id 730455
by author kimberlybird with most views (80). To choose a different one use
"name by author" or id number.
> mlp #16 palette hydrophobic blue-white-red range -20,20
Expected a keyword
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> mlp sel
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
To also show corresponding color key, enter the above mlp command and add key
true
> mlp sel
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
To also show corresponding color key, enter the above mlp command and add key
true
> mlp sel rainbow
Expected a keyword
> mlp sel palette rainbow
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
> mlp sel palette redblue
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
> show #!12 models
> select add #12
113704 atoms, 114767 bonds, 8041 residues, 13 models selected
> mlp sel palette redblue
Map values for surface "6s3l-exp.pdb_A SES surface": minimum -27.48, mean
-0.2524, maximum 24.29
Map values for surface "6s3l-exp.pdb_B SES surface": minimum -25.72, mean
-0.09088, maximum 24.07
Map values for surface "6s3l-exp.pdb_C SES surface": minimum -25.59, mean
-0.2559, maximum 23.58
Map values for surface "6s3l-exp.pdb_D SES surface": minimum -24.27, mean
-0.2151, maximum 23.9
Map values for surface "6s3l-exp.pdb_E SES surface": minimum -26.39, mean
-0.04115, maximum 24.09
Map values for surface "6s3l-exp.pdb_F SES surface": minimum -26, mean
-0.1947, maximum 23.89
Map values for surface "6s3l-exp.pdb_G SES surface": minimum -28.87, mean
2.021, maximum 23.21
Map values for surface "6s3l-exp.pdb_H SES surface": minimum -22.84, mean
2.101, maximum 23.06
Map values for surface "6s3l-exp.pdb_I SES surface": minimum -24.03, mean
2.137, maximum 23.2
Map values for surface "6s3l-exp.pdb_J SES surface": minimum -21.62, mean
2.126, maximum 23.01
Map values for surface "6s3l-exp.pdb_K SES surface": minimum -23.85, mean
0.5374, maximum 23.58
Map values for surface "flhA-final-c9.pdb_A SES surface": minimum -26.88, mean
-1.189, maximum 27.64
Map values for surface "flhA-final-c9.pdb_B SES surface": minimum -27.53, mean
-1.183, maximum 29.94
Map values for surface "flhA-final-c9.pdb_C SES surface": minimum -27.65, mean
-1.158, maximum 29.5
Map values for surface "flhA-final-c9.pdb_D SES surface": minimum -26.66, mean
-1.207, maximum 27.35
Map values for surface "flhA-final-c9.pdb_E SES surface": minimum -27.03, mean
-1.182, maximum 28.33
Map values for surface "flhA-final-c9.pdb_F SES surface": minimum -27.82, mean
-1.162, maximum 29.87
Map values for surface "flhA-final-c9.pdb_G SES surface": minimum -26.79, mean
-1.189, maximum 28.85
Map values for surface "flhA-final-c9.pdb_H SES surface": minimum -26.63, mean
-1.172, maximum 27.91
Map values for surface "flhA-final-c9.pdb_I SES surface": minimum -27.13, mean
-1.16, maximum 28.1
> hide #16.1 models
> show #16.1 models
> hide #16.1 models
> show #16.1 models
> hide #12.1 models
> show #12.1 models
> hide #12.1 models
> hide #12.2 models
> hide #12.3 models
> hide #!12 models
> show #!12 models
> hide sel atoms
> hide sel cartoons
> hide #12.4 models
> show #12.4 models
> hide #12.5 models
> show #12.5 models
> hide #12.6 models
> show #12.6 models
> hide #12.7 models
> show #12.7 models
> hide #12.8 models
> show #12.8 models
> hide #12.9 models
> show #12.9 models
> hide #12.9 models
> show #12.9 models
> select clear
[Repeated 1 time(s)]
> hide #!12 models
> hide #12.4 models
> hide #12.5 models
> hide #12.6 models
> hide #12.7 models
> show #12.7 models
> hide #12.8 models
> hide #12.9 models
> hide #12.7 models
> hide #!12 models
> show #!12 models
> show #!12,16 cartoons
[Repeated 1 time(s)]
> hide #!12,16 cartoons
> show #!6 models
> show #!3 models
> show #!9 models
> hide #!16 models
> view orient
> turn -x 90
> show #!11 models
> hide #!11 models
> show #10.1 models
> show #8.1 models
> color #8.1 #3cb37180
> select add #8
2 models selected
> select subtract #8.1
1 model selected
> select add #8
2 models selected
> select subtract #8.1
1 model selected
> select add #8
2 models selected
> select add #8
2 models selected
> select clear
> transparency #3,6,8-10#!12 0
> select clear
> show #!13 models
> show #!15 models
> hide #!15 models
> hide #!13 models
> show #!22 models
> show #!19 models
> show #!14 models
> hide #!14 models
> show #!14 models
> show #!13 models
> hide #!13 models
> show #!13 models
> show #!12#!14.1-47 cartoons
> select add #14
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 95 models selected
> hide sel cartoons
> hide sel atoms
[Repeated 1 time(s)]
> show sel cartoons
> hide sel atoms
[Repeated 1 time(s)]
> hide sel cartoons
[Repeated 3 time(s)]
> select clear
[Repeated 1 time(s)]
> select #14.2/Dt:184@NH2
1 atom, 1 residue, 1 model selected
> select #14.2/Ds:216@OG
1 atom, 1 residue, 1 model selected
> select clear
> select add #14
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 95 models selected
> select add #14
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 164 models selected
> select subtract #14
69 models selected
> select add #14
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 95 models selected
> hide sel cartoons
> show sel cartoons
> select clear
> show #!12#!14.1-47 cartoons
> hide #!12#!14.1-47 atoms
> select add #14
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 95 models selected
> style sel stick
Changed 70628 atom styles
> style sel stick
Changed 70628 atom styles
> style sel stick
Changed 70628 atom styles
> style sel stick
Changed 70628 atom styles
> surface hidePatches (#!14.1-47 & sel)
> hide sel atoms
> show sel cartoons
> select clear
> show #!15 models
> hide #!15 models
> show #!21 models
> hide #!21 models
> show #!23 models
> hide #!23 models
> show #!21 models
> hide #!21 models
> show #!20 models
> select clear
> show #!4 models
> show #!17 models
> select clear
> transparency #3-4,6,8-10,13-14,17,19-20,22#!12 0
> select clear
> view orient
[Repeated 1 time(s)]
> turn -x 90
> hide #!13 models
> show #!13 models
> hide #!14 models
> hide #!9 models
> show #!9 models
> hide #!9 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> hide #!6 models
> hide #!3 models
> hide #!12 models
> select add #5.1
1 model selected
> ui tool show "Color Actions"
> color sel medium sea green
> select add #5
2 models selected
> color #5.1 mediumseagreen transparency 0
> select clear
> select #20
2 models selected
> ui tool show "Color Actions"
> color sel medium sea green
> select clear
> view orient
> turn -x 90
> view orient
> turn -x 90
> ui mousemode right "crop volume"
> view orient
[Repeated 1 time(s)]
> volume #4 region 0,62,0,127,127,127
> turn -x 90
> show #!9 models
> show #!6 models
> show #!7 models
> hide #!7 models
> show #!3 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!11 models
> hide #!3 models
> show #!7 models
> hide #!11 models
> hide #!6 models
> show #!3 models
> show #!6 models
> select clear
[Repeated 1 time(s)]
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #13 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #22 size 27
> select clear
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> select #13
2 models selected
> select clear
> hide #!13 models
> show #!13 models
> hide #!13 models
> select clear
> show #!15 models
> hide #!15 models
> show #!12 models
> hide #!12 models
> show #!14 models
> turn -x 90
[Repeated 1 time(s)]
> view orient
> turn -x 90
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!14 models
> show #!15 models
> hide #!15 models
> show #!21 models
> hide #!21 models
> show #!21 models
> hide #!21 models
> show #!21 models
> show #!18 models
> hide #!18 models
> show #!18 models
> show #!23 models
> hide #!23 models
> show #!23 models
> select add #23
2 models selected
> select add #22
4 models selected
> select add #21
6 models selected
> select add #20
8 models selected
> select add #19
10 models selected
> select add #18
12 models selected
> select add #17
14 models selected
> select add #14
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 109 models selected
> select add #10.1
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 179 models selected
> select add #10
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 180 models selected
> select add #8.1
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 181 models selected
> select add #8
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 182 models selected
> select add #7
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 184 models selected
> select subtract #7
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 182 models selected
> select add #4
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 184 models selected
> view orient
> turn -x 90
> view orient
> volume #6 region 0,67,0,127,127,127
> select clear
> turn -x 90
> transparency #3-4,6-10,14,17-23 0
> select clear
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> volume #!3-4,6-10,17-23 showOutlineBox false
> show #!14 models
> hide #!14 models
> hide #!6 models
> hide #!7 models
> hide #!9 models
> hide #!3 models
> view orient
> volume #4 region 0,63,0,127,127,127
> turn -x 90
> show #!9 models
> hide #!9 models
> show #!9 models
> show #!11 models
> show #!7 models
> show #!6 models
> show #!3 models
> view orient
> volume #4 region 0,38,0,127,127,127
[Repeated 4 time(s)]
> volume #4 region 0,0,0,127,127,127
> view orient
> turn -x 90
> hide #!6 models
> hide #!7 models
> hide #!9 models
> hide #!11 models
> hide #!3 models
> view orient
> volume #4 region 0,0,0,127,127,127
[Repeated 2 time(s)]
> ui mousemode right "crop volume"
> volume #4 region 0,0,0,127,127,127
> ui mousemode right "crop volume"
> volume #4 region 0,0,0,127,127,127
> view orient
> volume #4 region 0,0,0,127,127,127
> ui mousemode right "crop volume"
[Repeated 1 time(s)]
> volume #!4,8,10,17-23 showOutlineBox true
> volume #4 region 0,64,0,127,127,127
> turn -x 90
> show #!7 models
> show #!6 models
> show #!9 models
> show #!3 models
> select clear
> volume #!3-4,6-10,17-23 showOutlineBox false
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> surface dust #4 size 27
> surface dust #6 size 27
> surface dust #3 size 27
> surface dust #8 size 27
> surface dust #10 size 27
> surface dust #17 size 27
> surface dust #9 size 27
> surface dust #7 size 27
> surface dust #18 size 27
> surface dust #19 size 27
> surface dust #20 size 27
> surface dust #21 size 27
> surface dust #22 size 27
> surface dust #23 size 27
> save /Users/jliu/Desktop/Export_appratus/Fig/3A.jpg width 4000 height 2487
> supersample 3
> show #!14 models
> save /Users/jliu/Desktop/Export_appratus/Fig/3A_model.jpg width 4000 height
> 2487 supersample 3
> show #!16 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> hide #!14 models
> show #!16 models
> hide #!16 atoms
> surface hidePatches #3-4,6-10,16-23
> show #!16 atoms
[Repeated 1 time(s)]
> hide #!16 atoms
> show #!16 cartoons
> close #2
> show #!1 models
> hide #!1 models
> show #1.1 models
> ui tool show "Segment Map"
[Repeated 1 time(s)]Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 1016 regions.
Showing 200 of 1016 region surfaces
1774 watershed regions, grouped to 1016 regions
Showing Bb-EXP-2.7A.seg - 1016 regions, 200 surfaces
> ui tool show "Model Panel"
> hide #!1 models
> hide #1.1 models
> hide #!2 models
> close #2
No segmentation chosen
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 1774 regions.
Showing 200 of 1774 region surfaces
1774 watershed regions, grouped to 1774 regions
Showing Bb-EXP-2.7A.seg - 1774 regions, 200 surfaces
> close #2
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 200 of 1748 regions.
Showing 200 of 1748 region surfaces
Only showing 200 of 799 regions.
Showing 200 of 799 region surfaces
1748 watershed regions, grouped to 799 regions
Showing Bb-EXP-2.7A.seg - 799 regions, 200 surfaces
> close #2
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 800 of 1748 regions.
Showing 800 of 1748 region surfaces
Showing 799 region surfaces
1748 watershed regions, grouped to 799 regions
Showing Bb-EXP-2.7A.seg - 799 regions, 799 surfaces
> close #2
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 400 of 1748 regions.
Showing 400 of 1748 region surfaces
Only showing 400 of 799 regions.
Showing 400 of 799 region surfaces
1748 watershed regions, grouped to 799 regions
Showing Bb-EXP-2.7A.seg - 799 regions, 400 surfaces
> close #2
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Only showing 600 of 1748 regions.
Showing 600 of 1748 region surfaces
Only showing 600 of 799 regions.
Showing 600 of 799 region surfaces
1748 watershed regions, grouped to 799 regions
Showing Bb-EXP-2.7A.seg - 799 regions, 600 surfaces
> close #2
Segmenting Bb-EXP-2.7A.mrc, density threshold 0.200000
Showing 200 region surfaces
1774 watershed regions, grouped to 200 regions
Showing Bb-EXP-2.7A.seg - 200 regions, 200 surfaces
> hide #!22 models
> hide #!21 models
> hide #!20 models
> hide #!19 models
> hide #!18 models
> hide #!17 models
> hide #!16 models
> hide #!23 models
> hide #10.1 models
> hide #!10 models
> hide #!9 models
> hide #8.1 models
> hide #!8 models
> hide #!7 models
> hide #!6 models
Grouped 6 regions
Grouped 2 regions
> hide #!4 models
> select clear
Grouped 3 regions
Opened Bb-EXP-2.7A_imasked as #24, grid size 128,128,128, pixel 2.7, shown at
step 1, values float32
> hide #!24 models
> show #!24 models
> hide #!2 models
> hide #!3 models
> select #24
2 models selected
> color #24.1 yellow
> select clear
> show #!9 models
> show #!11 models
> show #!7 models
> show #!6 models
> hide #!6 models
> hide #!7 models
> hide #!9 models
> hide #!11 models
> hide #!24 models
> show #!22 models
> show #!20 models
> show #!19 models
> show #!24 models
> show #!15 models
> hide #!15 models
> show #!13 models
> show #!12 models
> hide #!12 models
> show #10.1 models
> show #!11 models
> show #!7 models
> show #!6 models
> show #!9 models
> show #!12 models
> hide #!12 models
> show #!4 models
> show #5.1 models
> hide #5.1 models
> show #8.1 models
> show #!12 models
> hide #!12 models
> show #!15 models
> hide #!15 models
> show #!17 models
> view orient
> turn -x 90
> volume #!4-11,13,17,19-20,22,24 showOutlineBox false
> close #2
> show #!14 models
> hide #!14 models
> show #!23 models
> show #!21 models
> show #!18 models
> show #!14 models
> hide #!14 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> hide #18.1 models
> hide #!21 models
> show #!21 models
> hide #!23 models
> show #!23 models
> show #18.1 models
> hide #!18 models
> show #!18 models
> show #!15 models
> hide #!15 models
> hide #!8 models
> show #!8 models
> hide #!22 models
> show #!22 models
> hide #!22 models
> show #!22 models
> hide #!23 models
> show #!23 models
> hide #!19 models
> show #!19 models
> hide #18.1 models
> show #18.1 models
> hide #!18 models
> show #!18 models
> hide #!17 models
> show #!17 models
> show #!15 models
> hide #!15 models
> show #!16 models
> hide #!16 models
> select #13
2 models selected
> hide #!13 models
> view orient
> turn -x 90
> select clear
> save /Users/jliu/Desktop/Export_appratus/Fig/3A.jpg width 4000 height 3480
> supersample 1
> show #!14 models
> save /Users/jliu/Desktop/Export_appratus/Fig/3A_model.jpg width 4000 height
> 3480 supersample 1
> select #19
2 models selected
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!19 models
> show #!19 models
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 15 region surfaces
28 watershed regions, grouped to 15 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 15
regions, 15 surfaces
> close #2
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 26 region surfaces
28 watershed regions, grouped to 26 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 26
regions, 26 surfaces
> close #2
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 26 region surfaces
28 watershed regions, grouped to 26 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 26
regions, 26 surfaces
> close #2
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked, density
threshold 0.200000
Showing 28 region surfaces
Showing 26 region surfaces
28 watershed regions, grouped to 26 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 26
regions, 26 surfaces
> close #2
> view orient
> turn -x 90
> select clear
> view orient
> turn -x 90
> select clear
> select #6
2 models selected
> transparency #6.1#7.1#11.1 100
> select clear
> select #21
2 models selected
> select #17
2 models selected
> select clear
> select #11
2 models selected
> transparency #11.1 50
> select add #7
4 models selected
> hide #!7 models
> show #!7 models
> transparency #7.1#11.1 50
> hide #!14 models
> select #11
2 models selected
> hide #!14 target m
> transparency #11.1 0
> select #7
2 models selected
> select clear
> select #7
2 models selected
> transparency #7.1 100
> select clear
> select #11
2 models selected
> color #11.1 forest green
> ui tool show "Color Actions"
> color sel medium sea green
> color sel sea green
> color sel olive drab
> color sel sea green
> hide #!9 models
> hide #!24 models
> view orient
> ui mousemode right "crop volume"
> volume #6 region 0,0,0,127,127,127
> volume #4 region 0,64,0,127,127,127
> turn -x 90
> ui tool show "Color Actions"
> color sel lime green
> color sel green
> color sel sea green
> color sel olive drab
> color sel green
> color sel gold
> color sel orange
> color sel dark orange
> color sel goldenrod
> color sel sandy brown
> color sel orange
> select clear
> show #!14 models
> hide #!14 models
> show #!16 models
> hide #!16 cartoons
> show #!16 atoms
> select #16/F:251@NE2
1 atom, 1 residue, 1 model selected
> select clear
> hide #!16 models
> show #!14 models
> select add #14
70628 atoms, 71401 bonds, 101 pseudobonds, 9197 residues, 95 models selected
> surface (#!14.1-47 & sel)
> color #14 #d6d6d6 models transparency 0
> color sel light gray
> color sel gray
> color sel light gray
> color sel light sea green
> color sel medium sea green
> view orient
> volume #4 region 0,5,0,127,127,127
[Repeated 3 time(s)]
> volume #4 region 0,62,0,127,127,127
> save /Users/jliu/Desktop/Export_appratus/Session/Fig3.cxs includeMaps true
——— End of log from Tue Oct 4 10:50:46 2022 ———
opened ChimeraX session
> show #!24 models
> hide #!24 models
> show #!24 models
> show #!12 models
> hide #!12 models
> show #!15 models
> hide #!15 models
> hide #!14 models
> show #!14 models
> close #14
> open /Users/jliu/Desktop/Export_appratus/PDB/RBM2_RBM3&collar_x46.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/RBM2_RBM3&collar_x46.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA C 233
GLY C 258 1 26
Start residue of secondary structure not found: HELIX 2 2 THR C 405 GLY C 421
1 17
Start residue of secondary structure not found: SHEET 1 1 1 VAL C 262 ASP C
271 0
Start residue of secondary structure not found: SHEET 2 2 1 THR C 278 THR C
278 0
Start residue of secondary structure not found: SHEET 3 3 1 GLU C 279 HIS C
281 0
6 messages similar to the above omitted
Chain information for RBM2_RBM3&collar_x46.pdb
---
Chain | Description
2.1/C 2.2/C 2.3/C 2.4/C 2.5/C 2.6/C 2.7/C 2.8/C 2.9/C 2.10/C 2.11/C 2.12/C
2.13/C 2.14/C 2.15/C 2.16/C 2.17/C 2.18/C 2.19/C 2.20/C 2.21/C 2.22/C 2.23/C
2.24/C 2.25/C 2.26/C 2.27/C 2.28/C 2.29/C 2.30/C 2.31/C 2.32/C 2.33/C 2.34/C
2.35/C 2.36/C 2.37/C 2.38/C 2.39/C 2.40/C 2.41/C 2.42/C 2.43/C 2.44/C 2.45/C
2.46/C | No description available
2.47/D | No description available
> close #2
> open /Users/jliu/Desktop/Export_appratus/PDB/RBM2_RBM3&collar_x46.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/RBM2_RBM3&collar_x46.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA C 233
GLY C 258 1 26
Start residue of secondary structure not found: HELIX 2 2 THR C 405 GLY C 421
1 17
Start residue of secondary structure not found: SHEET 1 1 1 VAL C 262 ASP C
271 0
Start residue of secondary structure not found: SHEET 2 2 1 THR C 278 HIS C
281 0
Start residue of secondary structure not found: SHEET 3 3 1 LEU C 293 GLU C
302 0
4 messages similar to the above omitted
Chain information for RBM2_RBM3&collar_x46.pdb
---
Chain | Description
2.1/C 2.2/C 2.3/C 2.4/C 2.5/C 2.6/C 2.7/C 2.8/C 2.9/C 2.10/C 2.11/C 2.12/C
2.13/C 2.14/C 2.15/C 2.16/C 2.17/C 2.18/C 2.19/C 2.20/C 2.21/C 2.22/C 2.23/C
2.24/C 2.25/C 2.26/C 2.27/C 2.28/C 2.29/C 2.30/C 2.31/C 2.32/C 2.33/C 2.34/C
2.35/C 2.36/C 2.37/C 2.38/C 2.39/C 2.40/C 2.41/C 2.42/C 2.43/C 2.44/C 2.45/C
2.46/C | No description available
2.47/D | No description available
> hide #!2.1 models
> show #!2.1 models
> hide #!2.2 models
> show #!2.2 models
> hide #2.47 models
> show #2.47 models
> hide #!2.1 models
> show #!2.1 models
> hide #!2.1 models
> show #!2.1 models
> hide #!2.2 models
> show #!2.2 models
> hide #!2.6 models
> show #!2.6 models
> hide #!2.7 models
> show #!2.7 models
> hide #!2.12 models
> show #!2.12 models
> hide #!2.15 models
> show #!2.15 models
> hide #!2.18 models
> hide #!2.19 models
> hide #!2.20 models
> hide #!2.21 models
> hide #!2.22 models
> hide #!2.23 models
> hide #!2.24 models
> hide #!2.25 models
> hide #!2.26 models
> hide #!2.27 models
> hide #!2.28 models
> hide #!2.29 models
> hide #!2.30 models
> hide #!2.31 models
> hide #!2.32 models
> hide #!2.17 models
> hide #!2.16 models
> hide #!2.15 models
> hide #!2.14 models
> hide #!2.13 models
> hide #!2.12 models
> show #!2.12 models
> hide #!2.12 models
> show #!2.12 models
> hide #!2.36 models
> show #!2.36 models
> hide #!2.38 models
> show #!2.38 models
> hide #2.47 models
> show #2.47 models
> hide #2.47 models
> show #2.47 models
> hide #2.47 models
> select add #2.46
1185 atoms, 1197 bonds, 2 pseudobonds, 150 residues, 2 models selected
> select add #2.45
2370 atoms, 2394 bonds, 4 pseudobonds, 300 residues, 4 models selected
> select add #2.44
3555 atoms, 3591 bonds, 6 pseudobonds, 450 residues, 6 models selected
> select add #2.43
4740 atoms, 4788 bonds, 8 pseudobonds, 600 residues, 8 models selected
> select add #2.42
5925 atoms, 5985 bonds, 10 pseudobonds, 750 residues, 10 models selected
> select add #2.41
7110 atoms, 7182 bonds, 12 pseudobonds, 900 residues, 12 models selected
> select add #2.40
8295 atoms, 8379 bonds, 14 pseudobonds, 1050 residues, 14 models selected
> select add #2.39
9480 atoms, 9576 bonds, 16 pseudobonds, 1200 residues, 16 models selected
> select add #2.38
10665 atoms, 10773 bonds, 18 pseudobonds, 1350 residues, 18 models selected
> select add #2.37
11850 atoms, 11970 bonds, 20 pseudobonds, 1500 residues, 20 models selected
> select subtract #2.37
10665 atoms, 10773 bonds, 18 pseudobonds, 1350 residues, 18 models selected
> select add #2.36
11850 atoms, 11970 bonds, 20 pseudobonds, 1500 residues, 20 models selected
> select add #2.35
13035 atoms, 13167 bonds, 22 pseudobonds, 1650 residues, 22 models selected
> select add #2.34
14220 atoms, 14364 bonds, 24 pseudobonds, 1800 residues, 24 models selected
> select add #2.33
15405 atoms, 15561 bonds, 26 pseudobonds, 1950 residues, 26 models selected
> select add #2.37
16590 atoms, 16758 bonds, 28 pseudobonds, 2100 residues, 28 models selected
> select add #2.1
17775 atoms, 17955 bonds, 30 pseudobonds, 2250 residues, 30 models selected
> select add #2.2
18960 atoms, 19152 bonds, 32 pseudobonds, 2400 residues, 32 models selected
> select add #2.3
20145 atoms, 20349 bonds, 34 pseudobonds, 2550 residues, 34 models selected
> select add #2.4
21330 atoms, 21546 bonds, 36 pseudobonds, 2700 residues, 36 models selected
> select add #2.5
22515 atoms, 22743 bonds, 38 pseudobonds, 2850 residues, 38 models selected
> select add #2.6
23700 atoms, 23940 bonds, 40 pseudobonds, 3000 residues, 40 models selected
> select add #2.7
24885 atoms, 25137 bonds, 42 pseudobonds, 3150 residues, 42 models selected
> select add #2.8
26070 atoms, 26334 bonds, 44 pseudobonds, 3300 residues, 44 models selected
> select add #2.9
27255 atoms, 27531 bonds, 46 pseudobonds, 3450 residues, 46 models selected
> select add #2.10
28440 atoms, 28728 bonds, 48 pseudobonds, 3600 residues, 48 models selected
> select add #2.11
29625 atoms, 29925 bonds, 50 pseudobonds, 3750 residues, 50 models selected
> select add #2.12
30810 atoms, 31122 bonds, 52 pseudobonds, 3900 residues, 52 models selected
> show #!2.13 models
> hide #!2.13 models
> show #!2.18 models
> hide #!2.18 models
> surface (#!2.1-12,33-46 & sel)
> hide #!2.12 models
> show #!2.12 models
> hide #!2.12 models
> hide #!2.11 models
> select add #2.32
31995 atoms, 32319 bonds, 54 pseudobonds, 4050 residues, 80 models selected
> show #!2.32 models
> select subtract #2.32
30810 atoms, 31122 bonds, 52 pseudobonds, 3900 residues, 78 models selected
> show #!2.31 models
> select add #2.31
31995 atoms, 32319 bonds, 54 pseudobonds, 4050 residues, 80 models selected
> select add #2.32
33180 atoms, 33516 bonds, 56 pseudobonds, 4200 residues, 82 models selected
> show #!2.12 models
> show #!2.11 models
> hide #!2.12 models
> hide #!2.11 models
> show #!2.11 models
> select subtract #2.12
31995 atoms, 32319 bonds, 54 pseudobonds, 4050 residues, 80 models selected
> select subtract #2.11
30810 atoms, 31122 bonds, 52 pseudobonds, 3900 residues, 77 models selected
> hide #!2.11 models
> surface (#!2.1-10,31-46 & sel)
> hide #!2.10 models
> show #!2.10 models
> hide #!2.31 models
> select subtract #2.31
29625 atoms, 29925 bonds, 50 pseudobonds, 3750 residues, 76 models selected
> surface (#!2.1-10,32-46 & sel)
> hide #!2.32 models
> show #!2.32 models
> hide #!2.10 models
> select subtract #2.10
28440 atoms, 28728 bonds, 48 pseudobonds, 3600 residues, 73 models selected
> select #19
2 models selected
> transparency #18.1#19.1#20.1#23.1 100
> select clear
> select #18
2 models selected
> surface hidePatches #18.1
> select clear
> select #18
2 models selected
> select #23
2 models selected
> surface hidePatches #23.1
> select clear
> show #!3 models
> hide #!3 models
> hide #!24 models
> select #10
2 models selected
> transparency #8.1#10.1 100
> select clear
> select #23
2 models selected
> surface hidePatches #23.1
> select clear
> select #23
2 models selected
> hide #!18 models
> hide #!17 models
> show #!17 models
> hide #!23 models
> select clear
> show #!16 models
> select clear
> select add #16
13849 atoms, 14138 bonds, 1768 residues, 1 model selected
> color (#!16 & sel) yellow
> select clear
> select #22
2 models selected
> transparency #22.1 100
> select clear
> select #20
2 models selected
> transparency #20.1 0
> select clear
[Repeated 1 time(s)]
> view orient
> turn -x 90
> select clear
> show #!9 models
> hide #!9 models
> show #!24 models
> show #!23 models
> hide #!24 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!23 models
> show #!23 models
> hide #!21 models
> show #!21 models
> hide #!21 models
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!18 models
Populating font family aliases took 340 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.
> save /Users/jliu/Desktop/Export_appratus/Fig/3B.jpg width 4000 height 3480
> supersample 1
> save /Users/jliu/Desktop/Export_appratus/Session/3B.cxs includeMaps true
——— End of log from Tue Oct 4 11:33:43 2022 ———
opened ChimeraX session
> select add #2
70628 atoms, 71401 bonds, 92 pseudobonds, 9197 residues, 94 models selected
> select subtract #2
28 models selected
> select add #2
70628 atoms, 71401 bonds, 92 pseudobonds, 9197 residues, 94 models selected
> select subtract #2
28 models selected
> show #!3 models
> hide #!3 models
> show #!3 models
> show #!24 models
> hide #!24 models
> show #!21 models
> hide #!21 models
> hide #!16 models
> show #!9 models
> show #!24 models
> hide #!2 models
Drag select of 55 Bb-EXP-2.7A_imasked , 26 Bb-EXP-2_imasked , 3 Bb-
EXP-2_imasked_imasked , 8 Bb-EXP-2_imasked_imasked_imasked , 10 Bb-
EXP-2_imasked_imasked_imasked_imasked , 62 Bb-
EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked , 19 Bb-
EXP-2_imasked_imasked_imasked_imasked_imasked_imasked
> transparency
> #3.1#4.1#6.1#7.1#8.1#9.1#10.1#11.1#17.1#19.1#20.1#22.1#23.1#24.1 0
> select clear
> select #23
2 models selected
> hide #!2 target m
[Repeated 1 time(s)]
> select clear
> hide #!23 models
> select clear
> ui mousemode right "crop volume"
> volume #4 region 0,62,0,127,127,127
> volume #4 region 0,62,0,121,127,127
> volume #!3-11,17,19-20,22,24 showOutlineBox true
> volume #4 region 0,0,0,121,127,127
> volume #4 region 0,0,0,127,127,127
> hide #!11 models
> hide #!7 models
> hide #!6 models
> hide #!24 models
> hide #!3 models
> hide #!9 models
> view orient
> volume #4 region 0,65,0,127,127,127
> turn -x 90
> show #!9 models
> show #!11 models
> show #!16 models
> hide #!16 models
> show #!24 models
> show #!7 models
> show #!6 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!6 models
> show #!6 models
> hide #!7 models
> show #!7 models
> save /Users/jliu/Desktop/Export_appratus/Session/3A.cxs includeMaps true
> volume #!3-11,17,19-20,22,24 showOutlineBox false
> save /Users/jliu/Desktop/Export_appratus/Session/3A.cxs includeMaps true
——— End of log from Tue Oct 4 14:34:08 2022 ———
opened ChimeraX session
> show #!13 models
> show #!15 models
> hide #!15 models
> show #!23 models
> show #!21 models
> select #17
2 models selected
> ui tool show "Segment Map"
> hide #!19 models
> show #!19 models
> hide #!20 models
> show #!20 models
> hide #!13 models
> show #!13 models
> hide #!10 models
> show #!10 models
> hide #!4 models
> show #!4 models
> hide #!22 models
> show #!22 models
> hide #!24 models
> show #!24 models
> hide #!10 models
> show #!10 models
> hide #!20 models
> show #!20 models
> hide #!19 models
> show #!19 models
> hide #!8 models
> show #!8 models
> hide #!17 models
> show #!17 models
Segmenting Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
density threshold 0.200000
Showing 291 region surfaces
Showing 135 region surfaces
291 watershed regions, grouped to 135 regions
Showing Bb-EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg -
135 regions, 135 surfaces
Grouped 12 regions
Grouped 2 regions
Grouped 6 regions
Grouped 2 regions
> select clear
> select #23
2 models selected
> surface hidePatches #23.1
> hide #!21 models
> hide #!23 models
Grouped 13 regions
Grouped 3 regions
Opened Bb-
EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #25,
grid size 128,128,128, pixel 2.7, shown at step 1, values float32
> select clear
Opened Bb-
EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #26,
grid size 128,128,128, pixel 2.7, shown at step 1, values float32
> select clear
> hide #!14 models
> hide #!25 models
> show #!25 models
> hide #!26 models
> show #!26 models
> hide #!19 models
> hide #!25 models
> show #!25 models
> hide #!17 models
> hide #!25 models
> show #!25 models
> hide #!26 models
> show #!26 models
> show #!17 models
> hide #!17 models
> hide #!26 models
> show #!26 models
> hide #!25 models
> show #!25 models
> show #!14 models
> hide #!25 models
> hide #!14 models
> hide #!26 models
> show #!26 models
> show #!25 models
> hide #!25 models
> show #!25 models
> hide #!26 models
> show #!26 models
> close #26
> show #!14 models
> hide #!14 models
> show #!14 models
> hide #!14 models
> hide #!25 models
> show #!25 models
> show #!14 models
Opened Bb-
EXP-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #26,
grid size 128,128,128, pixel 2.7, shown at step 1, values float32
> hide #!14 models
> hide #!26 models
> show #!26 models
> select clear
> select #25
2 models selected
> select #25
2 models selected
> ui tool show "Color Actions"
> color sel medium sea green
> select clear
> select #6
2 models selected
> select #3
2 models selected
> select add #6
4 models selected
> select add #7
6 models selected
> select add #11
8 models selected
> ui tool show "Color Actions"
> color sel dark orange
> color sel orange
> color sel dark orange
> select clear
> show #!21 models
> hide #!21 models
> select add #21
2 models selected
> show #!21 models
> ui tool show "Color Actions"
> color sel medium sea green
> select clear
> show #!14 models
> hide #!14 models
> close #14
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!2 models
> hide #!2 models
> show #!15 models
> hide #!15 models
> show #!19 models
> hide #!19 models
> show #!23 models
> select #23
2 models selected
> select add #13
4 models selected
> select subtract #13
2 models selected
> select add #13
4 models selected
> select subtract #13
2 models selected
> select add #10
4 models selected
> select subtract #10
2 models selected
> select add #10
4 models selected
> select subtract #23
2 models selected
> ui tool show "Color Actions"
> color sel violet
> color sel plum
> select clear
> select #23
2 models selected
> show #!18 models
> select add #18
4 models selected
> select subtract #18
2 models selected
> select clear
> select add #17
2 models selected
> select subtract #17
Nothing selected
> select add #18
2 models selected
> select subtract #18
Nothing selected
> select add #23
2 models selected
> ui tool show "Color Actions"
> color sel medium sea green
> select clear
[Repeated 2 time(s)]
> hide #!18 models
> show #!18 models
> hide #!18 models
> show #!2 models
> hide #!2 models
> show #!2 models
> view orient
> turn -x 90
> hide #!13 models
> show #!13 models
> hide #!2 models
> select all
184332 atoms, 186168 bonds, 92 pseudobonds, 17238 residues, 140 models
selected
> unsel all
Unknown command: unsel all
> select none
Expected an objects specifier or a keyword
> select al
Expected an objects specifier or a keyword
> select all
184332 atoms, 186168 bonds, 92 pseudobonds, 17238 residues, 140 models
selected
> desel all
Unknown command: desel all
> hide all
[Repeated 6 time(s)]
> hide #3
> hide #4
> hide #4-26
> hide #4-#26
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide #4-26
> hide #5 \- #26
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide #!5 models
> select subtract #1
184332 atoms, 186168 bonds, 92 pseudobonds, 17238 residues, 186 models
selected
> deselect all
Unknown command: deselect all
> select all
184332 atoms, 186168 bonds, 92 pseudobonds, 17238 residues, 140 models
selected
> hide sel
> hide sel
[Repeated 5 time(s)]
> hide all.
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> hide all
[Repeated 12 time(s)]
> hide #!6 models
> hide #!7 models
> hide #!9 models
> hide #!24 models
> hide #!11 models
> show #!2 models
> hide #!2 models
> show #!5 models
> hide #!5 models
> show #!19 models
> show #!15 models
> hide #!15 models
> show #!15 models
> show #!12 models
> hide #!12 models
> view orient
> ui mousemode right "crop volume"
> volume #8 region 0,65,0,127,127,127
> volume sel & #!8,10,13,15,19-23,25-26 showOutlineBox true
> volume #8 region 0,3,0,127,127,127
> volume #8 region 0,63,0,127,127,127
> select clear
> show #!11 models
> show #!7 models
> show #!6 models
> show #!24 models
> show #!9 models
> ui mousemode right "crop volume"
> view orient
> turn -x 90
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #!6-11,13,15,19-26 showOutlineBox false
> hide #!2 models
> save /Users/jliu/Desktop/Export_appratus/Session/3A.cxs includeMaps true
> save /Users/jliu/Desktop/Export_appratus/Fig/3A.jpg width 4000 height 3081
> supersample 3
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> select #8
2 models selected
> show #!2 models
> select add #22
6 models selected
> select clear
> select add #22
2 models selected
> select add #20
4 models selected
> select add #11
6 models selected
> select add #9
8 models selected
> select add #7
10 models selected
> select add #6
12 models selected
> transparency #6.1#7.1#9.1#11.1#20.1#22.1 100
> select clear
> select add #24
2 models selected
> select add #10
4 models selected
> select add #7
6 models selected
> select add #6
8 models selected
> select add #9
10 models selected
> select add #11
12 models selected
> transparency #6.1#7.1#9.1#10.1#11.1#24.1 50
> transparency #6.1#7.1#9.1#10.1#11.1#24.1 70
> select clear
> select #13
2 models selected
> select clear
> select add #13
2 models selected
> select subtract #13
Nothing selected
> select add #15
2 models selected
> select subtract #15
Nothing selected
> select add #17
2 models selected
> select subtract #17
Nothing selected
> select add #19
2 models selected
> select add #20
4 models selected
> select subtract #20
2 models selected
> select add #21
4 models selected
> select subtract #21
2 models selected
> select add #21
4 models selected
> select subtract #19
2 models selected
> transparency #21.1 70
> select clear
> select #8
2 models selected
> transparency #8.1 70
> select clear
> select add #2
70628 atoms, 71401 bonds, 92 pseudobonds, 9197 residues, 94 models selected
> select subtract #2
28 models selected
> hide #!2 models
> show #!2 models
> show #!12 models
> open /Users/jliu/Desktop/Export_appratus/PDB/6s3l-exp.pdb
6s3l-exp.pdb title:
Structure of the core of the flagellar export apparatus from vibrio mimicus,
the flipqr-FLHB complex. [more info...]
Chain information for 6s3l-exp.pdb #14
---
Chain | Description
A | flagellar biosynthetic protein flip
B | flagellar biosynthetic protein flip
C | flagellar biosynthetic protein flip
D | flagellar biosynthetic protein flip
E | flagellar biosynthetic protein flip
F | flagellar biosynthetic protein flir
G H I J | flagellar biosynthetic protein fliq
K | flagellar biosynthetic protein FLHB
> show #14#!12#!2.1-9,32-46 cartoons
> hide #14#!12#!2.1-9,32-46 atoms
> select clear
> close #16
> select clear
> select #13
2 models selected
> hide #!13 models
> show #!13 models
> hide #!13 models
> select clear
> open /Users/jliu/Desktop/Export_appratus/PDB/MSring.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/MSring.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 PHE a 34
LEU a 61 1 28
Start residue of secondary structure not found: HELIX 2 2 ASP a 70 MET a 100 1
31
Start residue of secondary structure not found: HELIX 3 3 GLN b 37 LEU b 61 1
25
Start residue of secondary structure not found: HELIX 4 4 ASN b 69 SER b 101 1
33
Start residue of secondary structure not found: HELIX 5 5 PHE c 34 LEU c 61 1
28
40 messages similar to the above omitted
Chain information for MSring.pdb #16
---
Chain | Description
D | No description available
> select clear
> hide #16 models
> show #16 models
> hide #16 models
> show #16 models
> color #16 #8cff62 transparency 0
> select clear
> hide #16 models
> show #16 models
> hide #16 models
> show #16 models
> hide #16 models
> show #16 models
> hide #16 models
> show #16 models
> hide #!2 models
> show #!2 models
> hide #16 models
> close #14
> open /Users/jliu/Desktop/Export_appratus/PDB/6s3l-exp.pdb
6s3l-exp.pdb title:
Structure of the core of the flagellar export apparatus from vibrio mimicus,
the flipqr-FLHB complex. [more info...]
Chain information for 6s3l-exp.pdb #14
---
Chain | Description
A | flagellar biosynthetic protein flip
B | flagellar biosynthetic protein flip
C | flagellar biosynthetic protein flip
D | flagellar biosynthetic protein flip
E | flagellar biosynthetic protein flip
F | flagellar biosynthetic protein flir
G H I J | flagellar biosynthetic protein fliq
K | flagellar biosynthetic protein FLHB
> open /Users/jliu/Desktop/Export_appratus/PDB/6s3l.pdb
6s3l.pdb title:
Structure of the core of the flagellar export apparatus from vibrio mimicus,
the flipqr-FLHB complex. [more info...]
Chain information for 6s3l.pdb #27
---
Chain | Description
A | flagellar biosynthetic protein flip
B | flagellar biosynthetic protein flip
C | flagellar biosynthetic protein flip
D | flagellar biosynthetic protein flip
E | flagellar biosynthetic protein flip
F | flagellar biosynthetic protein flir
G H I J | flagellar biosynthetic protein fliq
K | flagellar biosynthetic protein FLHB
> close #27
> close #14
> open /Users/jliu/Desktop/Export_appratus/PDB/6s3l-p-exp.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/6s3l-p-exp.pdb
---
warnings | Start residue of secondary structure not found: HELIX 39 39 PHE F
11 MET F 29 1 19
Start residue of secondary structure not found: HELIX 40 40 PRO F 38 VAL F 53
1 16
Start residue of secondary structure not found: HELIX 41 41 SER F 68 SER F 107
1 40
Start residue of secondary structure not found: HELIX 42 42 PHE F 111 ASP F
116 1 6
Start residue of secondary structure not found: HELIX 43 43 PRO F 124 LEU F
158 1 35
15 messages similar to the above omitted
6s3l-p-exp.pdb title:
Structure of the core of the flagellar export apparatus from vibrio mimicus,
the flipqr-FLHB complex. [more info...]
Chain information for 6s3l-p-exp.pdb #14
---
Chain | Description
A | flagellar biosynthetic protein flip
B | flagellar biosynthetic protein flip
C | flagellar biosynthetic protein flip
D | flagellar biosynthetic protein flip
E | flagellar biosynthetic protein flip
> open /Users/jliu/Desktop/Export_appratus/PDB/6s3l-r-exp.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/6s3l-r-exp.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 111
MET A 133 1 23
Start residue of secondary structure not found: HELIX 2 2 SER A 140 ASN A 173
1 34
Start residue of secondary structure not found: HELIX 3 3 ARG A 179 LYS A 195
1 17
Start residue of secondary structure not found: HELIX 4 4 ARG A 198 GLY A 210
1 13
Start residue of secondary structure not found: HELIX 5 5 SER A 220 GLY A 262
1 43
45 messages similar to the above omitted
6s3l-r-exp.pdb title:
Structure of the core of the flagellar export apparatus from vibrio mimicus,
the flipqr-FLHB complex. [more info...]
Chain information for 6s3l-r-exp.pdb #27
---
Chain | Description
F | flagellar biosynthetic protein flir
> open /Users/jliu/Desktop/Export_appratus/PDB/6s3l-q-exp.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/6s3l-q-exp.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 111
MET A 133 1 23
Start residue of secondary structure not found: HELIX 2 2 SER A 140 ASN A 173
1 34
Start residue of secondary structure not found: HELIX 3 3 ARG A 179 LYS A 195
1 17
Start residue of secondary structure not found: HELIX 4 4 ARG A 198 GLY A 210
1 13
Start residue of secondary structure not found: HELIX 5 5 SER A 220 GLY A 262
1 43
45 messages similar to the above omitted
6s3l-q-exp.pdb title:
Structure of the core of the flagellar export apparatus from vibrio mimicus,
the flipqr-FLHB complex. [more info...]
Chain information for 6s3l-q-exp.pdb #28
---
Chain | Description
G H I J | flagellar biosynthetic protein fliq
> open /Users/jliu/Desktop/Export_appratus/PDB/6s3l-b-exp.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/6s3l-b-exp.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 111
MET A 133 1 23
Start residue of secondary structure not found: HELIX 2 2 SER A 140 ASN A 173
1 34
Start residue of secondary structure not found: HELIX 3 3 ARG A 179 LYS A 195
1 17
Start residue of secondary structure not found: HELIX 4 4 ARG A 198 GLY A 210
1 13
Start residue of secondary structure not found: HELIX 5 5 SER A 220 GLY A 262
1 43
49 messages similar to the above omitted
6s3l-b-exp.pdb title:
Structure of the core of the flagellar export apparatus from vibrio mimicus,
the flipqr-FLHB complex. [more info...]
Chain information for 6s3l-b-exp.pdb #29
---
Chain | Description
K | flagellar biosynthetic protein FLHB
> hide #29 models
> show #29 models
> hide #14 models
> hide #!20 models
> show #!20 models
> hide #27 models
> show #27 models
> hide #27 models
> show #27 models
> hide #27 models
> show #27 models
> show #14 models
> hide #14 models
> show #14 models
> show #14,27-29#!12#!2.1-9,32-46 cartoons
> hide #14,27-29#!12#!2.1-9,32-46 atoms
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> select #2.45/C:297@OE1
1 atom, 1 residue, 1 model selected
> select #2.43/C:282@CE2
1 atom, 1 residue, 1 model selected
> select clear
> hide #!10 models
> show #!10 models
> select add #10
2 models selected
> transparency #10.1 0
> select clear
> select #19
2 models selected
> hide #!19 models
> show #!19 models
> transparency #19.1 100
> select clear
> select #15
2 models selected
> transparency #15.1 100
> select clear
> hide #!15 models
> show #!15 models
> show #16 models
> hide #16 models
> open /Users/jliu/Desktop/Export_appratus/PDB/RBM2_RBM3&collar_x46.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/RBM2_RBM3&collar_x46.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA C 233
GLY C 258 1 26
Start residue of secondary structure not found: HELIX 2 2 THR C 405 GLY C 421
1 17
Start residue of secondary structure not found: SHEET 1 1 1 VAL C 262 ASP C
271 0
Start residue of secondary structure not found: SHEET 2 2 1 THR C 278 HIS C
281 0
Start residue of secondary structure not found: SHEET 3 3 1 LEU C 293 GLU C
302 0
4 messages similar to the above omitted
Chain information for RBM2_RBM3&collar_x46.pdb
---
Chain | Description
30.1/C 30.2/C 30.3/C 30.4/C 30.5/C 30.6/C 30.7/C 30.8/C 30.9/C 30.10/C 30.11/C
30.12/C 30.13/C 30.14/C 30.15/C 30.16/C 30.17/C 30.18/C 30.19/C 30.20/C
30.21/C 30.22/C 30.23/C 30.24/C 30.25/C 30.26/C 30.27/C 30.28/C 30.29/C
30.30/C 30.31/C 30.32/C 30.33/C 30.34/C 30.35/C 30.36/C 30.37/C 30.38/C
30.39/C 30.40/C 30.41/C 30.42/C 30.43/C 30.44/C 30.45/C 30.46/C | No
description available
30.47/D | No description available
> close #2
> hide #!30 models
> show #!30 models
> hide #!30 models
> show #!30 models
> hide #!30 models
Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon 'C' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon 'c' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon 'C' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00e7' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00c7' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x3' for virtual key 8 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> show #!30 models
> hide #!30 models
> show #!30 models
> view orient
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> turn -x 90
> hide #!30.21 models
> show #!30.21 models
> hide #!30.21 models
> hide #!30.22 models
> hide #!30.23 models
> hide #!30.24 models
> hide #!30.25 models
> hide #!30.26 models
> hide #!30.27 models
> hide #!30.28 models
> hide #!30.29 models
> hide #!30.30 models
> hide #!30.31 models
> hide #!30.32 models
> hide #!30.33 models
> show #!30.33 models
> hide #!30.20 models
> hide #!30.19 models
> hide #!30.18 models
> hide #!30.17 models
> hide #!30.16 models
> hide #!30.15 models
> hide #!30.14 models
> hide #!30.13 models
> hide #!30.12 models
> hide #!30.11 models
> hide #!30.10 models
> hide #!30.41 models
> show #!30.41 models
> hide #30.47 models
> show #30.47 models
> hide #30.47 models
> show #30.47 models
> show #!30.32 models
> hide #!30.32 models
> show #!30.32 models
> hide #!30.32 models
> show #!30.32 models
> show #!30.10 models
> view orient
> turn -x 90
> hide #!30 models
> close #30
> open /Users/jliu/Desktop/Export_appratus/PDB/test.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/test.pdb
---
warnings | End residue of secondary structure not found: HELIX 1 1 ALA C 233
GLY C 258 1 26
Start residue of secondary structure not found: HELIX 2 2 THR C 405 GLY C 421
1 17
Start residue of secondary structure not found: SHEET 1 1 1 VAL C 262 ASP C
271 0
Start residue of secondary structure not found: SHEET 2 2 1 THR C 278 HIS C
281 0
Start residue of secondary structure not found: SHEET 3 3 1 LEU C 293 GLU C
302 0
Start residue of secondary structure not found: SHEET 4 4 1 THR C 358 TYR C
366 0
6 messages similar to the above omitted
End residue of secondary structure not found: SHEET 4 4 1 THR C 358 TYR C 366
0
Start residue of secondary structure not found: HELIX 1 1 ALA C 233 GLY C 258
1 26
Start residue of secondary structure not found: HELIX 2 2 THR C 405 GLY C 421
1 17
Start residue of secondary structure not found: SHEET 1 1 1 VAL C 262 ASP C
271 0
Start residue of secondary structure not found: SHEET 6 6 1 ASP C 381 VAL C
391 0
Start residue of secondary structure not found: SHEET 7 7 1 THR C 429 ASN C
434 0
31 messages similar to the above omitted
Chain information for test.pdb
---
Chain | Description
2.1/C | No description available
2.2/C | No description available
2.3/C | No description available
2.4/C 2.5/C 2.6/C 2.7/C 2.8/C 2.9/C 2.10/C 2.11/C 2.12/C 2.13/C 2.14/C 2.15/C
2.16/C 2.17/C 2.18/C 2.19/C 2.20/C 2.21/C 2.22/C 2.23/C | No description
available
2.24/C | No description available
2.25/C | No description available
2.26/C | No description available
2.27/C | No description available
2.28/C | No description available
2.29/D | No description available
> hide #14 models
> hide #!12 models
> hide #27 models
> hide #28 models
> hide #29 models
> select add #2
36382 atoms, 36758 bonds, 64 pseudobonds, 4708 residues, 58 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.98903,-0.017954,0.14664,-15.144,0.0010314,0.9934,0.11468,-12.139,-0.14773,-0.11327,0.98252,0.082526
> select clear
> select add #16
16118 atoms, 16339 bonds, 2297 residues, 1 model selected
> select subtract #16
Nothing selected
> select add #2
36382 atoms, 36758 bonds, 64 pseudobonds, 4708 residues, 58 models selected
> view matrix models
> #2,-0.9018,-0.40997,0.1367,3.8077,0.42879,-0.88823,0.16486,-69.433,0.053838,0.20729,0.9768,5.6668
> view matrix models
> #2,-0.86969,-0.48149,0.10863,4.5429,0.49122,-0.82274,0.286,-80.628,-0.048337,0.30209,0.95205,11.513
> view matrix models
> #2,-0.80967,-0.56847,0.14587,-1.7603,0.58348,-0.80645,0.095874,-62.318,0.063138,0.16274,0.98465,3.8815
> view matrix models
> #2,-0.96106,-0.27583,-0.016944,33.891,0.27185,-0.95465,0.12144,-63.3,-0.049672,0.11211,0.99245,1.9135
> view matrix models
> #2,-0.94057,-0.33911,-0.018032,32.267,0.33252,-0.93048,0.15377,-65.645,-0.068923,0.13863,0.98794,3.2512
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.94057,-0.33911,-0.018032,13.185,0.33252,-0.93048,0.15377,-68.372,-0.068923,0.13863,0.98794,12.105
> select subtract #2
Nothing selected
> select add #2
36382 atoms, 36758 bonds, 64 pseudobonds, 4708 residues, 58 models selected
> view matrix models
> #2,-0.94057,-0.33911,-0.018032,5.6346,0.33252,-0.93048,0.15377,-28.64,-0.068923,0.13863,0.98794,-0.30644
> view matrix models
> #2,-0.94057,-0.33911,-0.018032,9.1825,0.33252,-0.93048,0.15377,-34.307,-0.068923,0.13863,0.98794,1.465
> view matrix models
> #2,-0.94057,-0.33911,-0.018032,9.0223,0.33252,-0.93048,0.15377,-21.355,-0.068923,0.13863,0.98794,-2.5796
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.94006,-0.34099,-0.0032592,7.5404,0.33775,-0.93236,0.12896,-19.04,-0.047014,0.12013,0.99164,-3.7356
> view matrix models
> #2,-0.94128,-0.32829,-0.078854,15.332,0.31558,-0.93849,0.14013,-19.997,-0.12001,0.10701,0.98699,-2.6529
> select subtract #2
Nothing selected
> select add #2
36382 atoms, 36758 bonds, 64 pseudobonds, 4708 residues, 58 models selected
> view matrix models
> #2,-0.81231,-0.57735,-0.082616,8.0291,0.55225,-0.80696,0.20938,-27.061,-0.18755,0.12445,0.97434,-0.16708
> view matrix models
> #2,-0.76681,-0.63164,-0.11421,9.5737,0.6278,-0.77508,0.071549,-13.512,-0.13371,-0.016835,0.99088,-5.3809
> view matrix models
> #2,-0.76278,-0.64336,-0.065233,4.4364,0.57225,-0.71854,0.39526,-43.971,-0.30117,0.26416,0.91625,9.5021
> view matrix models
> #2,-0.79475,-0.59746,-0.10688,9.6925,0.60168,-0.79868,-0.0093974,-5.5326,-0.079745,-0.071774,0.99423,-7.2964
> view matrix models
> #2,-0.78596,-0.61061,-0.097084,8.3258,0.60707,-0.7919,0.066043,-13.138,-0.11721,-0.0070293,0.99308,-5.4276
> view matrix models
> #2,-0.82914,-0.55018,0.099184,-16.153,0.55897,-0.81303,0.16287,-17.44,-0.0089674,0.19048,0.98165,-3.6917
> select subtract #2
Nothing selected
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 29 atomic models, 15 maps.
[Repeated 1 time(s)]
> select add #2
36382 atoms, 36758 bonds, 64 pseudobonds, 4708 residues, 58 models selected
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 29 atomic models, 15 maps.
[Repeated 3 time(s)]
> ui tool show "Fit in Map"
> fitmap sel inMap #1
Fit molecules test.pdb (#2.1), test.pdb (#2.2), test.pdb (#2.3), test.pdb
(#2.4), test.pdb (#2.5), test.pdb (#2.6), test.pdb (#2.7), test.pdb (#2.8),
test.pdb (#2.9), test.pdb (#2.10), test.pdb (#2.11), test.pdb (#2.12),
test.pdb (#2.13), test.pdb (#2.14), test.pdb (#2.15), test.pdb (#2.16),
test.pdb (#2.17), test.pdb (#2.18), test.pdb (#2.19), test.pdb (#2.20),
test.pdb (#2.21), test.pdb (#2.22), test.pdb (#2.23), test.pdb (#2.24),
test.pdb (#2.25), test.pdb (#2.26), test.pdb (#2.27), test.pdb (#2.28),
test.pdb (#2.29) to map Bb-EXP-2.7A.mrc (#1) using 36382 atoms
average map value = 0.96, steps = 320
shifted from previous position = 19.1
rotated from previous position = 11.7 degrees
atoms outside contour = 9103, contour level = 0.2
Position of test.pdb (#2.1) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.2) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.3) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.4) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.5) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.6) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.7) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.8) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.9) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.10) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.11) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.12) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.13) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.14) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.15) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.16) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.17) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.18) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.19) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.20) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.21) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.22) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.23) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.24) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.25) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.26) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.27) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.28) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
Position of test.pdb (#2.29) relative to Bb-EXP-2.7A.mrc (#1) coordinates:
Matrix rotation and translation
0.99949763 0.02830331 -0.01426229 1.40976739
-0.02487396 0.97939233 0.20042939 -29.16740053
0.01964119 -0.19997395 0.97960433 8.74479032
Axis -0.98782218 -0.08364218 -0.13119193
Axis point 0.00000000 28.51828746 148.49856989
Rotation angle (degrees) 11.69312208
Shift along axis -0.10022056
> select clear
> select add #2
36382 atoms, 36758 bonds, 64 pseudobonds, 4708 residues, 58 models selected
> surface (#2.28#!2.1-27,29 & sel)
> select clear
> view orient
> turn -x 90
> select clear
> show #27 models
> show #28 models
> show #29 models
> show #!12 models
> show #14 models
> show #16 models
> hide #16 models
> close #16
> select clear
> select #26
2 models selected
> select #26
2 models selected
> select clear
> show #!18 models
> hide #!18 models
> show #!18 models
> hide #!18 models
> select add #18
2 models selected
> select subtract #18
Nothing selected
> select add #19
2 models selected
> select subtract #19
Nothing selected
> select add #19
2 models selected
> select subtract #19
Nothing selected
> select add #20
2 models selected
> select subtract #20
Nothing selected
> select add #20
2 models selected
> select subtract #20
Nothing selected
> select add #21
2 models selected
> transparency #21.1 0
> select clear
[Repeated 1 time(s)]
> show #!13 models
> select clear
> select #13
2 models selected
> hide #!15 models
> select subtract #13
Nothing selected
> show #!15 models
> hide #!19 models
> show #!19 models
> hide #!13 models
> show #!13 models
> hide #!13 models
> show #!18 models
> hide #!19 models
> show #!19 models
> hide #!19 models
> show #!19 models
> hide #!18 models
> show #!18 models
> select add #19
2 models selected
> transparency #19.1 0
> select subtract #19
Nothing selected
> select add #19
2 models selected
> transparency #19.1 0
> select clear
> select add #19
2 models selected
> select subtract #19
Nothing selected
> select add #19
2 models selected
> transparency #19.1 0
> select clear
> select #19
2 models selected
> select subtract #19
Nothing selected
> select add #19
2 models selected
> transparency #19.1 100
> select add #20
4 models selected
> select subtract #19
2 models selected
> select subtract #20
Nothing selected
> select add #18
2 models selected
> transparency #18.1 0
> select clear
> select #18
2 models selected
> ui tool show "Color Actions"
> color sel medium sea green
> select clear
> select add #27
1948 atoms, 1993 bonds, 251 residues, 1 model selected
> color sel hot pink
> select clear
> select add #28
2896 atoms, 2968 bonds, 356 residues, 1 model selected
> ui tool show "Color Actions"
> color sel salmon
> select clear
> select #2.18/C:376@CD
1 atom, 1 residue, 1 model selected
> select add #6
1 atom, 1 residue, 4 models selected
> select add #7
1 atom, 1 residue, 6 models selected
> select add #11
1 atom, 1 residue, 8 models selected
> select add #10
1 atom, 1 residue, 10 models selected
> select subtract #10
1 atom, 1 residue, 8 models selected
> select add #24
1 atom, 1 residue, 10 models selected
> transparency (#!2.18 & sel) 90
> select clear
[Repeated 1 time(s)]
> select add #6
2 models selected
> select add #7
4 models selected
> select add #11
6 models selected
> select add #9
8 models selected
> select add #24
10 models selected
> transparency #6.1#7.1#9.1#11.1#24.1 100
> transparency #6.1#7.1#9.1#11.1#24.1 90
> select clear
[Repeated 1 time(s)]
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x9' for virtual key 48 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> show #!13 models
> hide #!13 models
> show #!13 models
> hide #!13 models
> select clear
> hide #!12 models
> close #12
> open /Users/jliu/Desktop/Export_appratus/PDB/flhA_cytosolic.pdb
> /Users/jliu/Desktop/Export_appratus/PDB/flhA_linker.pdb
> /Users/jliu/Desktop/Export_appratus/PDB/flhA_mem.pdb
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/flhA_cytosolic.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 4
LYS A 6 1 3
Start residue of secondary structure not found: HELIX 2 2 ILE A 9 TYR A 12 1 4
Start residue of secondary structure not found: HELIX 3 3 LYS A 18 PHE A 34 1
17
Start residue of secondary structure not found: HELIX 4 4 ALA A 40 TYR A 63 1
24
Start residue of secondary structure not found: HELIX 5 5 SER A 67 PHE A 70 1
4
103 messages similar to the above omitted
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/flhA_linker.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ALA A 4
LYS A 6 1 3
Start residue of secondary structure not found: HELIX 2 2 ILE A 9 TYR A 12 1 4
Start residue of secondary structure not found: HELIX 3 3 LYS A 18 PHE A 34 1
17
Start residue of secondary structure not found: HELIX 4 4 ALA A 40 TYR A 63 1
24
Start residue of secondary structure not found: HELIX 5 5 SER A 67 PHE A 70 1
4
337 messages similar to the above omitted
Summary of feedback from opening
/Users/jliu/Desktop/Export_appratus/PDB/flhA_mem.pdb
---
warnings | Start residue of secondary structure not found: HELIX 11 11 LEU A
289 PHE A 304 1 16
Start residue of secondary structure not found: HELIX 12 12 THR A 310 SER A
351 1 42
Start residue of secondary structure not found: HELIX 13 13 VAL A 373 ILE A
375 1 3
Start residue of secondary structure not found: HELIX 14 14 GLU A 383 PHE A
399 1 17
Start residue of secondary structure not found: HELIX 15 15 ASP A 468 LYS A
476 1 9
265 messages similar to the above omitted
Chain information for flhA_cytosolic.pdb #12
---
Chain | Description
A B C D E F G H I | No description available
Chain information for flhA_linker.pdb #16
---
Chain | Description
A B C D E F G H I | No description available
Chain information for flhA_mem.pdb #30
---
Chain | Description
A B C D E F G H I | No description available
> select add #30
40293 atoms, 40554 bonds, 2592 residues, 1 model selected
> ui tool show "Color Actions"
> color sel cornflower blue
> select subtract #30
Nothing selected
> select add #16
10944 atoms, 11079 bonds, 675 residues, 1 model selected
> color sel hot pink
> select clear
> select add #12
48618 atoms, 48978 bonds, 3006 residues, 1 model selected
> ui tool show "Color Actions"
> color sel steel blue
> select clear
> select add #12
48618 atoms, 48978 bonds, 3006 residues, 1 model selected
> select add #30
88911 atoms, 89532 bonds, 5598 residues, 2 models selected
> select add #16
99855 atoms, 100611 bonds, 6273 residues, 3 models selected
> show sel cartoons
> hide sel atoms
> select clear
[Repeated 1 time(s)]
> select add #30
40293 atoms, 40554 bonds, 2592 residues, 1 model selected
> select subtract #30
Nothing selected
> select add #12
48618 atoms, 48978 bonds, 3006 residues, 1 model selected
> ui tool show "Color Actions"
> color sel olive
> select clear
[Repeated 2 time(s)]
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x10' for virtual key 97 with
QFlags<Qt::KeyboardModifier>(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> select clear
> show #!13 models
> hide #!13 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> select clear
[Repeated 1 time(s)]
> select add #29
1492 atoms, 1520 bonds, 193 residues, 1 model selected
> ui tool show "Color Actions"
> color sel gold
> select clear
[Repeated 1 time(s)]
> save /Users/jliu/Desktop/Export_appratus/Session/3B.cxs includeMaps true
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 3391, in take_snapshot
data[attr] = getattr(self, attr).value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '···········1'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x7f8ec4c5d4f0> -> <chimerax.segger.segment_dialog.VolumeSegmentationDialog
object at 0x7f8eb62842e0> 'segment map': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
Populating font family aliases took 381 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.
ValueError: error processing: 'tools' -> -> 'segment map': Error while saving
session data for 'tools' -> -> 'segment map'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 3391, in take_snapshot
data[attr] = getattr(self, attr).value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '···········1'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 51, in display
run(session, cmd)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core_formats/__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x7f8ec4c5d4f0> -> <chimerax.segger.segment_dialog.VolumeSegmentationDialog
object at 0x7f8eb62842e0> 'segment map': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
ValueError: error processing: 'tools' -> -> 'segment map': Error while saving
session data for 'tools' -> -> 'segment map'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
> save /Users/jliu/Desktop/Export_appratus/Session/3B.cxs includeMaps true
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 3391, in take_snapshot
data[attr] = getattr(self, attr).value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '···········1'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x7f8ec4c5d4f0> -> <chimerax.segger.segment_dialog.VolumeSegmentationDialog
object at 0x7f8eb62842e0> 'segment map': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
ValueError: error processing: 'tools' -> -> 'segment map': Error while saving
session data for 'tools' -> -> 'segment map'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 3391, in take_snapshot
data[attr] = getattr(self, attr).value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '···········1'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 51, in display
run(session, cmd)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core_formats/__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x7f8ec4c5d4f0> -> <chimerax.segger.segment_dialog.VolumeSegmentationDialog
object at 0x7f8eb62842e0> 'segment map': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
ValueError: error processing: 'tools' -> -> 'segment map': Error while saving
session data for 'tools' -> -> 'segment map'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
> save /Users/jliu/Desktop/Export_appratus/Session/3B.cxs includeMaps true
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 3391, in take_snapshot
data[attr] = getattr(self, attr).value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '···········1'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x7f8ec4c5d4f0> -> <chimerax.segger.segment_dialog.VolumeSegmentationDialog
object at 0x7f8eb62842e0> 'segment map': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
ValueError: error processing: 'tools' -> -> 'segment map': Error while saving
session data for 'tools' -> -> 'segment map'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 3391, in take_snapshot
data[attr] = getattr(self, attr).value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '···········1'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 51, in display
run(session, cmd)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core_formats/__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x7f8ec4c5d4f0> -> <chimerax.segger.segment_dialog.VolumeSegmentationDialog
object at 0x7f8eb62842e0> 'segment map': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
ValueError: error processing: 'tools' -> -> 'segment map': Error while saving
session data for 'tools' -> -> 'segment map'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
> save /Users/jliu/Desktop/Export_appratus/Session/3B.cxs includeMaps true
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 3391, in take_snapshot
data[attr] = getattr(self, attr).value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '···········1'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x7f8ec4c5d4f0> -> <chimerax.segger.segment_dialog.VolumeSegmentationDialog
object at 0x7f8eb62842e0> 'segment map': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
ValueError: error processing: 'tools' -> -> 'segment map': Error while saving
session data for 'tools' -> -> 'segment map'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/segger/segment_dialog.py", line 3391, in take_snapshot
data[attr] = getattr(self, attr).value
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/widgets/composite.py", line 190, in _get_value
return self.string_to_value(self._line_edit.text())
ValueError: invalid literal for int() with base 10: '···········1'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/dialog.py", line 51, in display
run(session, cmd)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/save_command/cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core_formats/__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 625, in save
mgr.discovery(self._state_containers)
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x7f8ec4c5d4f0> -> <chimerax.segger.segment_dialog.VolumeSegmentationDialog
object at 0x7f8eb62842e0> 'segment map': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x7f8ec4c5d4f0> ->
<chimerax.segger.segment_dialog.VolumeSegmentationDialog object at
0x7f8eb62842e0> 'segment map'
ValueError: error processing: 'tools' -> -> 'segment map': Error while saving
session data for 'tools' -> -> 'segment map'
File
"/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Window position QRect(1291,1583 100x30) outside any known screen, using
primary screen
OpenGL version: 4.1 ATI-4.8.101
OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac18,3
Processor Name: Quad-Core Intel Core i5
Processor Speed: 3.8 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Memory: 16 GB
System Firmware Version: 451.140.1.0.0
OS Loader Version: 540.120.3~22
SMC Version (system): 2.41f2
Software:
System Software Overview:
System Version: macOS 12.6 (21G115)
Kernel Version: Darwin 21.6.0
Time since boot: 14 days 6:07
Graphics/Displays:
Radeon Pro 580:
Chipset Model: Radeon Pro 580
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 8 GB
Vendor: AMD (0x1002)
Device ID: 0x67df
Revision ID: 0x00c0
ROM Revision: 113-D000AA-931
VBIOS Version: 113-D0001A1X-025
EFI Driver Version: 01.00.931
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: Retina 5K (5120 x 2880)
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.18.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.4
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
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