id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
812	Adding pseudobonds causes graphics error	Greg Couch	Tom Goddard	"Finding hydrogen bonds for 1eyg produces:

414 hydrogen bonds found
Error processing trigger ""graphics update""
Traceback (most recent call last):
File ""/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/triggerset.py"", line 126, in invoke
return self._func(self._name, data)
File ""/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/structure.py"", line 2230, in _update_graphics_if_needed
s[i]._update_graphics_if_needed()
File ""/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/structure.py"", line 309, in _update_graphics_if_needed
self._update_graphics(gc)
File ""/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/structure.py"", line 327, in _update_graphics
pbg._update_graphics(changes)
File ""/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/pbgroup.py"", line 143, in _update_graphics
d.positions = self._update_positions(pbonds, bond_atoms)
File ""/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/pbgroup.py"", line 160, in _update_positions
return s._halfbond_cylinder_placements(axyz0, axyz1, pbonds.radii)
File ""/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.6/lib/python3.6/site-packages/chimerax/core/atomic/structure.py"", line 2593, in _halfbond_cylinder_placements
half_cylinder_rotations(axyz0, axyz1, radii, p)
ValueError: Cylinder end-point and radii arrays must have same size, got 2 and 2"	defect	closed	major	Alpha 3	Graphics		fixed						all	ChimeraX