Changes between Initial Version and Version 1 of Ticket #8435


Ignore:
Timestamp:
Feb 3, 2023, 5:04:15 PM (3 years ago)
Author:
Eric Pettersen
Comment:

Reported by Cesar Menor-Salvan

Legend:

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Added
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  • Ticket #8435

    • Property Component Unassigned → Depiction
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Crash computing ribbons

  • Ticket #8435 – Description

    initial v1  
    1414  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
    1515  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
     16Fatal Python error: Aborted
     17
     18Current thread 0x0000694c (most recent call first):
     19  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\ribbon.py", line 229 in _get_polymer_spline
     20  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\ribbon.py", line 70 in _make_ribbon_graphics
     21  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\ribbon.py", line 588 in compute_ribbons
     22  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py", line 557 in _create_ribbon_graphics
     23  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py", line 300 in update_graphics_if_needed
     24  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py", line 1581 in _update_graphics_if_needed
     25  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py", line 130 in invoke
     26  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py", line 213 in _activate
     27  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py", line 182 in activate
     28  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py", line 350 in activate_trigger
     29  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\graphics\view.py", line 269 in check_for_drawing_change
     30  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py", line 65 in draw_new_frame
     31  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py", line 138 in _redraw_timer_callback
     32  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 293 in event_loop
     33  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 866 in init
     34  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-packages\ChimeraX_main.py", line 1015 in
     35  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 87 in _run_code
     36  File "C:\Program Files\ChimeraX 1.2.5\bin\lib\runpy.py", line 194 in _run_module_as_main
     37
     38
     39Log:
     40UCSF ChimeraX version: 1.2.5 (2021-05-24) 
     41© 2016-2021 Regents of the University of California. All rights reserved. 
     42How to cite UCSF ChimeraX 
     43
     44
     45
     46
     47OpenGL version: 3.3.0 NVIDIA 516.94
     48OpenGL renderer: NVIDIA GeForce GTX 960/PCIe/SSE2
     49OpenGL vendor: NVIDIA Corporation
     50Manufacturer: MICRO-STAR INTERNATIONAL CO., LTD
     51Model: MS-B08911
     52OS: Microsoft Windows 10 Home (Build 19044)
     53Memory: 8,514,162,688
     54MaxProcessMemory: 137,438,953,344
     55CPU: 4 Intel(R) Core(TM) i5-4460S CPU @ 2.90GHz
     56OSLanguage: es-ES
     57Locale: ('es_ES', 'cp1252')
     58PyQt5 5.15.2, Qt 5.15.2
     59Installed Packages:
     60    alabaster: 0.7.12
     61    appdirs: 1.4.4
     62    Babel: 2.9.1
     63    backcall: 0.2.0
     64    blockdiag: 2.0.1
     65    certifi: 2020.12.5
     66    cftime: 1.5.0
     67    chardet: 3.0.4
     68    ChimeraX-AddCharge: 1.0.1
     69    ChimeraX-AddH: 2.1.6
     70    ChimeraX-AlignmentAlgorithms: 2.0
     71    ChimeraX-AlignmentHdrs: 3.2
     72    ChimeraX-AlignmentMatrices: 2.0
     73    ChimeraX-Alignments: 2.1
     74    ChimeraX-AmberInfo: 1.0
     75    ChimeraX-Arrays: 1.0
     76    ChimeraX-Atomic: 1.13.2
     77    ChimeraX-AtomicLibrary: 3.1.3
     78    ChimeraX-AtomSearch: 2.0
     79    ChimeraX-AtomSearchLibrary: 1.0
     80    ChimeraX-AxesPlanes: 2.0
     81    ChimeraX-BasicActions: 1.1
     82    ChimeraX-BILD: 1.0
     83    ChimeraX-BlastProtein: 1.1
     84    ChimeraX-BondRot: 2.0
     85    ChimeraX-BugReporter: 1.0
     86    ChimeraX-BuildStructure: 2.5.2
     87    ChimeraX-Bumps: 1.0
     88    ChimeraX-BundleBuilder: 1.1
     89    ChimeraX-ButtonPanel: 1.0
     90    ChimeraX-CageBuilder: 1.0
     91    ChimeraX-CellPack: 1.0
     92    ChimeraX-Centroids: 1.1
     93    ChimeraX-ChemGroup: 2.0
     94    ChimeraX-Clashes: 2.1
     95    ChimeraX-ColorActions: 1.0
     96    ChimeraX-ColorGlobe: 1.0
     97    ChimeraX-ColorKey: 1.2.1
     98    ChimeraX-CommandLine: 1.1.4
     99    ChimeraX-ConnectStructure: 2.0
     100    ChimeraX-Contacts: 1.0
     101    ChimeraX-Core: 1.2.5
     102    ChimeraX-CoreFormats: 1.0
     103    ChimeraX-coulombic: 1.1.1
     104    ChimeraX-Crosslinks: 1.0
     105    ChimeraX-Crystal: 1.0
     106    ChimeraX-CrystalContacts: 1.0
     107    ChimeraX-DataFormats: 1.1
     108    ChimeraX-Dicom: 1.0
     109    ChimeraX-DistMonitor: 1.1.3
     110    ChimeraX-DistUI: 1.0
     111    ChimeraX-Dssp: 2.0
     112    ChimeraX-EMDB-SFF: 1.0
     113    ChimeraX-ExperimentalCommands: 1.0
     114    ChimeraX-FileHistory: 1.0
     115    ChimeraX-FunctionKey: 1.0
     116    ChimeraX-Geometry: 1.1
     117    ChimeraX-gltf: 1.0
     118    ChimeraX-Graphics: 1.0
     119    ChimeraX-Hbonds: 2.1
     120    ChimeraX-Help: 1.1
     121    ChimeraX-HKCage: 1.3
     122    ChimeraX-IHM: 1.0
     123    ChimeraX-ImageFormats: 1.1
     124    ChimeraX-IMOD: 1.0
     125    ChimeraX-IO: 1.0.1
     126    ChimeraX-Label: 1.0
     127    ChimeraX-ListInfo: 1.1.1
     128    ChimeraX-Log: 1.1.2
     129    ChimeraX-LookingGlass: 1.1
     130    ChimeraX-Maestro: 1.8.1
     131    ChimeraX-Map: 1.0.2
     132    ChimeraX-MapData: 2.0
     133    ChimeraX-MapEraser: 1.0
     134    ChimeraX-MapFilter: 2.0
     135    ChimeraX-MapFit: 2.0
     136    ChimeraX-MapSeries: 2.0
     137    ChimeraX-Markers: 1.0
     138    ChimeraX-Mask: 1.0
     139    ChimeraX-MatchMaker: 1.2.1
     140    ChimeraX-MDcrds: 2.2
     141    ChimeraX-MedicalToolbar: 1.0.1
     142    ChimeraX-Meeting: 1.0
     143    ChimeraX-MLP: 1.1
     144    ChimeraX-mmCIF: 2.3
     145    ChimeraX-MMTF: 2.1
     146    ChimeraX-Modeller: 1.0.1
     147    ChimeraX-ModelPanel: 1.0.1
     148    ChimeraX-ModelSeries: 1.0
     149    ChimeraX-Mol2: 2.0
     150    ChimeraX-Morph: 1.0
     151    ChimeraX-MouseModes: 1.1
     152    ChimeraX-Movie: 1.0
     153    ChimeraX-Neuron: 1.0
     154    ChimeraX-Nucleotides: 2.0.1
     155    ChimeraX-OpenCommand: 1.5
     156    ChimeraX-PDB: 2.4.1
     157    ChimeraX-PDBBio: 1.0
     158    ChimeraX-PDBLibrary: 1.0.1
     159    ChimeraX-PDBMatrices: 1.0
     160    ChimeraX-PickBlobs: 1.0
     161    ChimeraX-Positions: 1.0
     162    ChimeraX-PresetMgr: 1.0.1
     163    ChimeraX-PubChem: 2.0.1
     164    ChimeraX-ReadPbonds: 1.0
     165    ChimeraX-Registration: 1.1
     166    ChimeraX-RemoteControl: 1.0
     167    ChimeraX-ResidueFit: 1.0
     168    ChimeraX-RestServer: 1.1
     169    ChimeraX-RNALayout: 1.0
     170    ChimeraX-RotamerLibMgr: 2.0
     171    ChimeraX-RotamerLibsDunbrack: 2.0
     172    ChimeraX-RotamerLibsDynameomics: 2.0
     173    ChimeraX-RotamerLibsRichardson: 2.0
     174    ChimeraX-SaveCommand: 1.4
     175    ChimeraX-SchemeMgr: 1.0
     176    ChimeraX-SDF: 2.0
     177    ChimeraX-Segger: 1.0
     178    ChimeraX-Segment: 1.0
     179    ChimeraX-SeqView: 2.3
     180    ChimeraX-Shape: 1.0.1
     181    ChimeraX-Shell: 1.0
     182    ChimeraX-Shortcuts: 1.0
     183    ChimeraX-ShowAttr: 1.0
     184    ChimeraX-ShowSequences: 1.0
     185    ChimeraX-SideView: 1.0
     186    ChimeraX-Smiles: 2.0.1
     187    ChimeraX-SmoothLines: 1.0
     188    ChimeraX-SpaceNavigator: 1.0
     189    ChimeraX-StdCommands: 1.3.1
     190    ChimeraX-STL: 1.0
     191    ChimeraX-Storm: 1.0
     192    ChimeraX-Struts: 1.0
     193    ChimeraX-Surface: 1.0
     194    ChimeraX-SwapAA: 2.0
     195    ChimeraX-SwapRes: 2.1
     196    ChimeraX-TapeMeasure: 1.0
     197    ChimeraX-Test: 1.0
     198    ChimeraX-Toolbar: 1.0.1
     199    ChimeraX-ToolshedUtils: 1.2
     200    ChimeraX-Tug: 1.0
     201    ChimeraX-UI: 1.7.6
     202    ChimeraX-uniprot: 2.1
     203    ChimeraX-UnitCell: 1.0
     204    ChimeraX-ViewDockX: 1.0
     205    ChimeraX-Vive: 1.1
     206    ChimeraX-VolumeMenu: 1.0
     207    ChimeraX-VTK: 1.0
     208    ChimeraX-WavefrontOBJ: 1.0
     209    ChimeraX-WebCam: 1.0
     210    ChimeraX-WebServices: 1.0
     211    ChimeraX-Zone: 1.0
     212    colorama: 0.4.3
     213    comtypes: 1.1.7
     214    cxservices: 1.0
     215    cycler: 0.10.0
     216    Cython: 0.29.21
     217    decorator: 5.0.9
     218    distlib: 0.3.1
     219    docutils: 0.16
     220    filelock: 3.0.12
     221    funcparserlib: 0.3.6
     222    grako: 3.16.5
     223    h5py: 2.10.0
     224    html2text: 2020.1.16
     225    idna: 2.10
     226    ihm: 0.17
     227    imagecodecs: 2020.5.30
     228    imagesize: 1.2.0
     229    ipykernel: 5.3.4
     230    ipython: 7.18.1
     231    ipython-genutils: 0.2.0
     232    jedi: 0.17.2
     233    Jinja2: 2.11.2
     234    jupyter-client: 6.1.7
     235    jupyter-core: 4.7.1
     236    kiwisolver: 1.3.1
     237    line-profiler: 2.1.2
     238    lxml: 4.6.2
     239    lz4: 3.1.0
     240    MarkupSafe: 2.0.1
     241    matplotlib: 3.3.2
     242    msgpack: 1.0.0
     243    netCDF4: 1.5.4
     244    networkx: 2.5
     245    numexpr: 2.7.3
     246    numpy: 1.19.2
     247    numpydoc: 1.1.0
     248    openvr: 1.14.1501
     249    packaging: 20.9
     250    ParmEd: 3.2.0
     251    parso: 0.7.1
     252    pickleshare: 0.7.5
     253    Pillow: 7.2.0
     254    pip: 21.0.1
     255    pkginfo: 1.5.0.1
     256    prompt-toolkit: 3.0.18
     257    psutil: 5.7.2
     258    pycollada: 0.7.1
     259    pydicom: 2.0.0
     260    Pygments: 2.7.1
     261    PyOpenGL: 3.1.5
     262    PyOpenGL-accelerate: 3.1.5
     263    pyparsing: 2.4.7
     264    PyQt5-commercial: 5.15.2
     265    PyQt5-sip: 12.8.1
     266    PyQtWebEngine-commercial: 5.15.2
     267    python-dateutil: 2.8.1
     268    pytz: 2021.1
     269    pywin32: 228
     270    pyzmq: 22.0.3
     271    qtconsole: 4.7.7
     272    QtPy: 1.9.0
     273    RandomWords: 0.3.0
     274    requests: 2.24.0
     275    scipy: 1.5.2
     276    setuptools: 50.3.2
     277    sfftk-rw: 0.6.7.dev1
     278    six: 1.15.0
     279    snowballstemmer: 2.1.0
     280    sortedcontainers: 2.2.2
     281    Sphinx: 3.2.1
     282    sphinxcontrib-applehelp: 1.0.2
     283    sphinxcontrib-blockdiag: 2.0.0
     284    sphinxcontrib-devhelp: 1.0.2
     285    sphinxcontrib-htmlhelp: 2.0.0
     286    sphinxcontrib-jsmath: 1.0.1
     287    sphinxcontrib-qthelp: 1.0.3
     288    sphinxcontrib-serializinghtml: 1.1.5
     289    suds-jurko: 0.6
     290    tables: 3.6.1
     291    tifffile: 2020.9.3
     292    tinyarray: 1.2.3
     293    tornado: 6.1
     294    traitlets: 5.0.5
     295    urllib3: 1.25.11
     296    wcwidth: 0.2.5
     297    webcolors: 1.11.1
     298    wheel: 0.36.0
     299    wheel-filename: 1.3.0
     300    WMI: 1.5.1
     301
     302}}}