id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9848 Graphics crash, macOS 10.15.7, Radeon Pro Vega 48 lp212@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-10.15.7-x86_64-i386-64bit ChimeraX Version: 1.7.dev202306060017 (2023-06-06 00:17:37 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Current thread 0x00000001085abdc0 (most recent call first): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py"", line 235 in swap_buffers File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py"", line 497 in swap_buffers File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py"", line 191 in draw File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py"", line 288 in render File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py"", line 113 in _redraw File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py"", line 138 in invoke File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py"", line 237 in _activate File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py"", line 206 in activate File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py"", line 382 in activate_trigger File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 89 in draw_new_frame File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py"", line 158 in update_graphics_now File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/volume_viewer.py"", line 2233 in moved_marker_cb File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/histogram.py"", line 416 in move_marker_cb File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/volume_viewer.py"", line 2159 in _drag File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/volume_viewer.py"", line 2155 in mouseMoveEvent File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py"", line 275 in event_loop File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 892 in init File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py"", line 1043 in File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 87 in _run_code File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py"", line 197 in _run_module_as_main Process: ChimeraX [7153] Path: /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 1.7.0 (1.7.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [7153] User ID: 501 Date/Time: 2023-09-26 16:42:44.615 +0100 OS Version: Mac OS X 10.15.7 (19H1824) Report Version: 12 Anonymous UUID: 00793036-5073-2795-E567-3396AEE1EF13 Sleep/Wake UUID: 6DC49668-C995-4721-8C8D-17DCFEFFEBDB Time Awake Since Boot: 230000 seconds Time Since Wake: 7900 seconds System Integrity Protection: enabled Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY Application Specific Information: abort() called Application Specific Signatures: Graphics hardware encountered an error and was reset: 0x00000001 Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_kernel.dylib 0x00007fff6987432a __pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff69930e60 pthread_kill + 430 2 libsystem_c.dylib 0x00007fff6978b93e raise + 26 3 libsystem_platform.dylib 0x00007fff699255fd _sigtramp + 29 4 ??? 000000000000000000 0 + 0 5 libsystem_c.dylib 0x00007fff697fb808 abort + 120 6 libGPUSupportMercury.dylib 0x00007fff50d620a5 gpusGenerateCrashLog.cold.1 + 95 7 libGPUSupportMercury.dylib 0x00007fff50d5918f gpusGenerateCrashLog + 89 8 com.apple.AMDRadeonX5000GLDriver 0x000000012b7ea9f2 gpusKillClientExt + 9 9 libGPUSupportMercury.dylib 0x00007fff50d5a6a1 gpusSubmitDataBuffers + 490 10 com.apple.AMDRadeonX5000GLDriver 0x000000012b822e1f glrATI_Hwl_SubmitPacketsWithToken + 101 11 com.apple.AMDRadeonX5000GLDriver 0x000000012b825d3b gldPresentFramebufferData + 83 12 GLEngine 0x00007fff3a5a28d1 glSwap_Exec + 97 13 com.apple.opengl 0x00007fff3a584473 CGLFlushDrawable + 59 14 com.apple.AppKit 0x00007fff2d261faa -[NSOpenGLContext flushBuffer] + 20 15 libqcocoa.dylib 0x000000012aad5743 0x12aa5d000 + 493379 16 QtGui 0x000000011dd6c584 QOpenGLContext::swapBuffers(QSurface*) + 212 17 QtGui.abi3.so 0x000000011e36e50f meth_QOpenGLContext_swapBuffers(_object*, _object*) + 95 18 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sip_api_call_procedure_method + 199 78 QtWidgets.abi3.so 0x000000011cebfa78 sipQGraphicsView::mouseMoveEvent(QMouseEvent*) + 104 79 QtWidgets 0x000000011d43ba84 QWidget::event(QEvent*) + 580 80 QtWidgets 0x000000011d4d22bb QFrame::event(QEvent*) + 43 81 QtWidgets 0x000000011d7b7bee QGraphicsView::viewportEvent(QEvent*) + 1294 82 QtWidgets.abi3.so 0x000000011cec0eff sipQGraphicsView::viewportEvent(QEvent*) + 191 83 QtCore 0x000000011ad373c5 QCoreApplicationPrivate::sendThroughObjectEventFilters(QObject*, QEvent*) + 229 84 QtWidgets 0x000000011d3eb9b3 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 227 85 QtWidgets 0x000000011d3eddc9 QApplication::notify(QObject*, QEvent*) + 5817 86 QtWidgets.abi3.so 0x000000011cf3a186 sipQApplication::notify(QObject*, QEvent*) + 230 87 QtCore 0x000000011ad3712a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170 88 QtWidgets 0x000000011d3ec0a5 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, 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__CFRunLoopDoSources0 + 209 101 com.apple.CoreFoundation 0x00007fff2fc4416a __CFRunLoopRun + 927 102 com.apple.CoreFoundation 0x00007fff2fc4376e CFRunLoopRunSpecific + 462 103 com.apple.HIToolbox 0x00007fff2e86faad RunCurrentEventLoopInMode + 292 104 com.apple.HIToolbox 0x00007fff2e86f6e4 ReceiveNextEventCommon + 359 105 com.apple.HIToolbox 0x00007fff2e86f569 _BlockUntilNextEventMatchingListInModeWithFilter + 64 106 com.apple.AppKit 0x00007fff2ceb8659 _DPSNextEvent + 883 107 com.apple.AppKit 0x00007fff2ceb6ea0 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352 108 com.apple.AppKit 0x00007fff2cea8bae -[NSApplication run] + 658 109 libqcocoa.dylib 0x000000012aa73753 0x12aa5d000 + 91987 110 QtCore 0x000000011ad404b6 QEventLoop::exec(QFlags) + 486 111 QtCore 0x000000011ad37725 QCoreApplication::exec() + 133 112 QtWidgets.abi3.so 0x000000011d02654a meth_QApplication_exec(_object*, _object*) + 90 113 org.python.python 0x000000010534c71d cfunction_call + 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libsystem_pthread.dylib 0x00007fff69931425 _pthread_cond_wait + 698 2 libopenblas64_.0.dylib 0x000000010892f23f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 2: 0 libsystem_kernel.dylib 0x00007fff69870872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69931425 _pthread_cond_wait + 698 2 libopenblas64_.0.dylib 0x000000010892f23f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 3: 0 libsystem_kernel.dylib 0x00007fff69870872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69931425 _pthread_cond_wait + 698 2 libopenblas64_.0.dylib 0x000000010892f23f blas_thread_server + 207 3 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 4: 0 libsystem_kernel.dylib 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libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 9:: Chrome_IOThread 0 libsystem_kernel.dylib 0x00007fff69876b86 kevent64 + 10 1 QtWebEngineCore 0x0000000122b523ca 0x11e67d000 + 72176586 2 QtWebEngineCore 0x0000000122b5226f 0x11e67d000 + 72176239 3 QtWebEngineCore 0x0000000122af2ff3 0x11e67d000 + 71786483 4 QtWebEngineCore 0x0000000122aaaa32 0x11e67d000 + 71490098 5 QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 6 QtWebEngineCore 0x0000000120336572 0x11e67d000 + 30119282 7 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 8 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 9 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 10:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 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QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 8 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 9 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 10 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 11 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 12:: Chrome_ChildIOThread 0 libsystem_kernel.dylib 0x00007fff69876b86 kevent64 + 10 1 QtWebEngineCore 0x0000000122b523ca 0x11e67d000 + 72176586 2 QtWebEngineCore 0x0000000122b5226f 0x11e67d000 + 72176239 3 QtWebEngineCore 0x0000000122af2ff3 0x11e67d000 + 71786483 4 QtWebEngineCore 0x0000000122aaaa32 0x11e67d000 + 71490098 5 QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 6 QtWebEngineCore 0x0000000125778882 0x11e67d000 + 118470786 7 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 8 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 9 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 10 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 13:: CompositorTileWorker1 0 libsystem_kernel.dylib 0x00007fff69870872 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff69931425 _pthread_cond_wait + 698 2 QtWebEngineCore 0x0000000122b43e22 0x11e67d000 + 72117794 3 QtWebEngineCore 0x0000000124d86505 0x11e67d000 + 108041477 4 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 5 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 6 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 14:: ThreadPoolSingleThreadSharedForeground0 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b0c4af 0x11e67d000 + 71890095 4 QtWebEngineCore 0x0000000122b0d057 0x11e67d000 + 71893079 5 QtWebEngineCore 0x0000000122b0cbbd 0x11e67d000 + 71891901 6 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 7 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 15:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b4b71f 0x11e67d000 + 72148767 4 QtWebEngineCore 0x0000000122a76e69 0x11e67d000 + 71278185 5 QtWebEngineCore 0x0000000122af2ff3 0x11e67d000 + 71786483 6 QtWebEngineCore 0x0000000122aaaa32 0x11e67d000 + 71490098 7 QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 8 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 9 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 10 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 11 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 16:: VizCompositorThread 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b4b71f 0x11e67d000 + 72148767 4 QtWebEngineCore 0x0000000122a76e69 0x11e67d000 + 71278185 5 QtWebEngineCore 0x0000000122af2ff3 0x11e67d000 + 71786483 6 QtWebEngineCore 0x0000000122aaaa32 0x11e67d000 + 71490098 7 QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 8 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 9 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 10 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 11 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 17:: NetworkService 0 libsystem_kernel.dylib 0x00007fff69876b86 kevent64 + 10 1 QtWebEngineCore 0x0000000122b523ca 0x11e67d000 + 72176586 2 QtWebEngineCore 0x0000000122b5226f 0x11e67d000 + 72176239 3 QtWebEngineCore 0x0000000122af2ff3 0x11e67d000 + 71786483 4 QtWebEngineCore 0x0000000122aaaa32 0x11e67d000 + 71490098 5 QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 6 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 7 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 8 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 9 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 18:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b4b71f 0x11e67d000 + 72148767 4 QtWebEngineCore 0x0000000122a76e69 0x11e67d000 + 71278185 5 QtWebEngineCore 0x0000000122af2ff3 0x11e67d000 + 71786483 6 QtWebEngineCore 0x0000000122aaaa32 0x11e67d000 + 71490098 7 QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 8 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 9 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 10 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 11 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 19:: ThreadPoolSingleThreadForegroundBlocking1 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b0c4af 0x11e67d000 + 71890095 4 QtWebEngineCore 0x0000000122b0d057 0x11e67d000 + 71893079 5 QtWebEngineCore 0x0000000122b0cbed 0x11e67d000 + 71891949 6 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 7 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 20:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b4b71f 0x11e67d000 + 72148767 4 QtWebEngineCore 0x0000000122a76e69 0x11e67d000 + 71278185 5 QtWebEngineCore 0x0000000122af2ff3 0x11e67d000 + 71786483 6 QtWebEngineCore 0x0000000122aaaa32 0x11e67d000 + 71490098 7 QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 8 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 9 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 10 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 11 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 21:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2fc45825 __CFRunLoopServiceMachPort + 247 3 com.apple.CoreFoundation 0x00007fff2fc442f2 __CFRunLoopRun + 1319 4 com.apple.CoreFoundation 0x00007fff2fc4376e CFRunLoopRunSpecific + 462 5 com.apple.AppKit 0x00007fff2d059ea4 _NSEventThread + 132 6 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 7 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 22:: MemoryInfra 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b4b71f 0x11e67d000 + 72148767 4 QtWebEngineCore 0x0000000122a76e69 0x11e67d000 + 71278185 5 QtWebEngineCore 0x0000000122af2ff3 0x11e67d000 + 71786483 6 QtWebEngineCore 0x0000000122aaaa32 0x11e67d000 + 71490098 7 QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 8 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 9 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 10 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 11 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 23:: ThreadPoolSingleThreadSharedBackgroundBlocking2 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b0c4af 0x11e67d000 + 71890095 4 QtWebEngineCore 0x0000000122b0cd0c 0x11e67d000 + 71892236 5 QtWebEngineCore 0x0000000122b0cb2d 0x11e67d000 + 71891757 6 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 7 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 24:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b4b71f 0x11e67d000 + 72148767 4 QtWebEngineCore 0x0000000122a76e69 0x11e67d000 + 71278185 5 QtWebEngineCore 0x0000000122af2ff3 0x11e67d000 + 71786483 6 QtWebEngineCore 0x0000000122aaaa32 0x11e67d000 + 71490098 7 QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 8 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 9 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 10 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 11 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 25:: ThreadPoolBackgroundWorker 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b0c4af 0x11e67d000 + 71890095 4 QtWebEngineCore 0x0000000122b0d057 0x11e67d000 + 71893079 5 QtWebEngineCore 0x0000000122b0cafd 0x11e67d000 + 71891709 6 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 7 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 26:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b4b71f 0x11e67d000 + 72148767 4 QtWebEngineCore 0x0000000122a76e69 0x11e67d000 + 71278185 5 QtWebEngineCore 0x0000000122af2ff3 0x11e67d000 + 71786483 6 QtWebEngineCore 0x0000000122aaaa32 0x11e67d000 + 71490098 7 QtWebEngineCore 0x0000000122b19a58 0x11e67d000 + 71944792 8 QtWebEngineCore 0x0000000122b19bea 0x11e67d000 + 71945194 9 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 10 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 11 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 27:: ThreadPoolForegroundWorker 0 libsystem_kernel.dylib 0x00007fff6986ddea mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff6986e160 mach_msg + 60 2 QtWebEngineCore 0x0000000122b4b933 0x11e67d000 + 72149299 3 QtWebEngineCore 0x0000000122b0c4af 0x11e67d000 + 71890095 4 QtWebEngineCore 0x0000000122b0d057 0x11e67d000 + 71893079 5 QtWebEngineCore 0x0000000122b0cb8d 0x11e67d000 + 71891853 6 QtWebEngineCore 0x0000000122b45458 0x11e67d000 + 72123480 7 libsystem_pthread.dylib 0x00007fff69931109 _pthread_start + 148 8 libsystem_pthread.dylib 0x00007fff6992cb8b thread_start + 15 Thread 28: 0 libsystem_pthread.dylib 0x00007fff6992cb68 start_wqthread + 0 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00000001085abdc0 rcx: 0x00007fda68047a58 rdx: 0x0000000000000000 rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007fda68047a80 rsp: 0x00007fda68047a58 r8: 0x00007fda68047f48 r9: 0xb5d00121eebaaee7 r10: 0x00000001085abdc0 r11: 0x0000000000000246 r12: 0x0000000000000307 r13: 0x00007fda34c0c930 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff6987432a rfl: 0x0000000000000246 cr2: 0x0000700004eb7ff8 Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133 Binary Images: 0x1052bf000 - 0x1052bfff3 +edu.ucsf.cgl.ChimeraX (1.7.0 - 1.7.0.0) /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX 0x1052ce000 - 0x105536fff +org.python.python (3.9.11, [c] 2001-2021 Python Software Foundation. - 3.9.11) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python 0x1056b0000 - 0x1056b2fff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so 0x1056bc000 - 0x1056c0ff7 +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so 0x1056ca000 - 0x1056cffff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so 0x1056d9000 - 0x1056dbfff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so 0x1056e5000 - 0x105716fff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so 0x105728000 - 0x105729fff +grp.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so 0x105733000 - 0x105738ff7 +_struct.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so 0x105747000 - 0x10574ffff +math.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so 0x10575d000 - 0x10575eff7 +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so 0x105768000 - 0x105769fff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so 0x105773000 - 0x105777fff +_sha512.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so 0x105781000 - 0x105781fff +_arrays.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/_arrays.cpython-39-darwin.so 0x10578b000 - 0x10582cff7 +libarrays.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/lib/libarrays.dylib 0x105852000 - 0x105857fff +_json.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so 0x105861000 - 0x105ca8fcb +_multiarray_umath.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so 0x105e01000 - 0x105f18ff7 +libgfortran.3.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib 0x105f87000 - 0x105fbdfff +libquadmath.0.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib 0x105fd3000 - 0x105fe8ff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib 0x107ffa000 - 0x108009fff +_datetime.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so 0x10801d000 - 0x108034fff +_pickle.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so 0x108047000 - 0x10805affb +_multiarray_tests.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so 0x108077000 - 0x108079fff +_posixsubprocess.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so 0x108083000 - 0x108087ff7 +select.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so 0x108091000 - 0x1080a2ff7 +_ctypes.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so 0x1080bb000 - 0x1080d6fff +_umath_linalg.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so 0x1080f3000 - 0x108106fff +_pocketfft_internal.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so 0x108113000 - 0x108186ff3 +mtrand.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/mtrand.cpython-39-darwin.so 0x1081eb000 - 0x10820aff3 +bit_generator.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/bit_generator.cpython-39-darwin.so 0x10822f000 - 0x108266fff +_common.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_common.cpython-39-darwin.so 0x108287000 - 0x10828dfff +_hashlib.cpython-39-darwin.so (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_hashlib.cpython-39-darwin.so 0x10829c000 - 0x1082f5ff7 +libssl.1.1.dylib (0) /Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libssl.1.1.dylib 0x108327000 - 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0x7fff661a0fff libCRFSuite.dylib (48) /usr/lib/libCRFSuite.dylib 0x7fff661a3000 - 0x7fff661adfff libChineseTokenizer.dylib (34) /usr/lib/libChineseTokenizer.dylib 0x7fff661ae000 - 0x7fff66236fff libCoreStorage.dylib (551.0.1) /usr/lib/libCoreStorage.dylib 0x7fff66239000 - 0x7fff6623bff7 libDiagnosticMessagesClient.dylib (112) /usr/lib/libDiagnosticMessagesClient.dylib 0x7fff66281000 - 0x7fff66438ffb libFosl_dynamic.dylib (100.4) /usr/lib/libFosl_dynamic.dylib 0x7fff6645f000 - 0x7fff66465ff3 libIOReport.dylib (54) /usr/lib/libIOReport.dylib 0x7fff66547000 - 0x7fff6654efff libMatch.1.dylib (36) /usr/lib/libMatch.1.dylib 0x7fff6657d000 - 0x7fff6659dff7 libMobileGestalt.dylib (826.140.5) /usr/lib/libMobileGestalt.dylib 0x7fff6661d000 - 0x7fff666faff7 libSMC.dylib (20) /usr/lib/libSMC.dylib 0x7fff6670f000 - 0x7fff66710fff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib 0x7fff66711000 - 0x7fff6679cff7 libTelephonyUtilDynamic.dylib (5017.1) /usr/lib/libTelephonyUtilDynamic.dylib 0x7fff6679d000 - 0x7fff6679efff libThaiTokenizer.dylib (3) /usr/lib/libThaiTokenizer.dylib 0x7fff667b6000 - 0x7fff667ccfff libapple_nghttp2.dylib (1.39.2) /usr/lib/libapple_nghttp2.dylib 0x7fff66801000 - 0x7fff66873ff7 libarchive.2.dylib (72.140.2) /usr/lib/libarchive.2.dylib 0x7fff66874000 - 0x7fff6690dfe5 libate.dylib (3.0.1) /usr/lib/libate.dylib 0x7fff66911000 - 0x7fff66911ff3 libauto.dylib (187) /usr/lib/libauto.dylib 0x7fff66912000 - 0x7fff669d6ffe libboringssl.dylib (283.120.1) /usr/lib/libboringssl.dylib 0x7fff669d7000 - 0x7fff669e7ffb libbsm.0.dylib (60.100.1) /usr/lib/libbsm.0.dylib 0x7fff669e8000 - 0x7fff669f4fff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib 0x7fff669f5000 - 0x7fff66a47fff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib 0x7fff66a48000 - 0x7fff66a5dffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib 0x7fff66a5e000 - 0x7fff66a5efff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib 0x7fff66a5f000 - 0x7fff66a70fff libcmph.dylib (8) /usr/lib/libcmph.dylib 0x7fff66a71000 - 0x7fff66a88fd7 libcompression.dylib (87.1) /usr/lib/libcompression.dylib 0x7fff66d62000 - 0x7fff66d78ff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib 0x7fff66d79000 - 0x7fff66d7afff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib 0x7fff6721d000 - 0x7fff67321fcf libcrypto.44.dylib (47.140.2) /usr/lib/libcrypto.44.dylib 0x7fff67324000 - 0x7fff6732ffff libcsfde.dylib (551.0.1) /usr/lib/libcsfde.dylib 0x7fff67337000 - 0x7fff67396ff7 libcups.2.dylib (483.9) /usr/lib/libcups.2.dylib 0x7fff67398000 - 0x7fff673fdff7 libcurl.4.dylib (118.120.6) /usr/lib/libcurl.4.dylib 0x7fff674a0000 - 0x7fff674a0fff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib 0x7fff674a1000 - 0x7fff674bbff7 libexpat.1.dylib (19.60.3) /usr/lib/libexpat.1.dylib 0x7fff674c9000 - 0x7fff674cbfff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib 0x7fff674cc000 - 0x7fff674d1f57 libffi.dylib (26) /usr/lib/libffi.dylib 0x7fff674da000 - 0x7fff674dffff libgermantok.dylib (24) /usr/lib/libgermantok.dylib 0x7fff674e0000 - 0x7fff674e9ff7 libheimdal-asn1.dylib (564.140.8) /usr/lib/libheimdal-asn1.dylib 0x7fff674ea000 - 0x7fff675dafff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib 0x7fff675db000 - 0x7fff67832fff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib 0x7fff6784c000 - 0x7fff6784dfff liblangid.dylib (133) /usr/lib/liblangid.dylib 0x7fff6784e000 - 0x7fff67866ff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib 0x7fff6787e000 - 0x7fff67925ff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib 0x7fff67926000 - 0x7fff67b88ff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib 0x7fff67ef5000 - 0x7fff67f24fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib 0x7fff68054000 - 0x7fff684d0ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib 0x7fff684d1000 - 0x7fff684e8fff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib 0x7fff68571000 - 0x7fff685a4fde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib 0x7fff685a5000 - 0x7fff685a6ff7 libodfde.dylib (26) /usr/lib/libodfde.dylib 0x7fff685b7000 - 0x7fff685bbfff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib 0x7fff685be000 - 0x7fff685f4fff libpcap.A.dylib (89.120.2) /usr/lib/libpcap.A.dylib 0x7fff68634000 - 0x7fff68642ff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib 0x7fff68643000 - 0x7fff68646ff3 libpmenergy.dylib (214.120.2) /usr/lib/libpmenergy.dylib 0x7fff68647000 - 0x7fff68649fff libpmsample.dylib (214.120.2) /usr/lib/libpmsample.dylib 0x7fff68678000 - 0x7fff68690fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib 0x7fff68692000 - 0x7fff686d6ff7 libsandbox.1.dylib (1217.141.8) /usr/lib/libsandbox.1.dylib 0x7fff686d7000 - 0x7fff686e9ff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib 0x7fff686ea000 - 0x7fff686ebff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib 0x7fff686ec000 - 0x7fff688d6ff7 libsqlite3.dylib (308.6) /usr/lib/libsqlite3.dylib 0x7fff689ca000 - 0x7fff689f7ffb libssl.46.dylib (47.140.2) /usr/lib/libssl.46.dylib 0x7fff68a79000 - 0x7fff68aaaff7 libtidy.A.dylib (17.3) /usr/lib/libtidy.A.dylib 0x7fff68acc000 - 0x7fff68b26ff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib 0x7fff68b27000 - 0x7fff68b2affb libutil.dylib (57.140.1) /usr/lib/libutil.dylib 0x7fff68b2b000 - 0x7fff68b38fff libxar.1.dylib (425.7) /usr/lib/libxar.1.dylib 0x7fff68b3e000 - 0x7fff68c20fff libxml2.2.dylib (33.9) /usr/lib/libxml2.2.dylib 0x7fff68c24000 - 0x7fff68c4cfff libxslt.1.dylib (16.12) /usr/lib/libxslt.1.dylib 0x7fff68c4d000 - 0x7fff68c5fff3 libz.1.dylib (76) /usr/lib/libz.1.dylib 0x7fff6950e000 - 0x7fff69513ff3 libcache.dylib (83) /usr/lib/system/libcache.dylib 0x7fff69514000 - 0x7fff6951ffff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff69520000 - 0x7fff69527fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib 0x7fff69528000 - 0x7fff69531ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib 0x7fff69532000 - 0x7fff695c4fdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib 0x7fff696d1000 - 0x7fff69711ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib 0x7fff69712000 - 0x7fff69748fff libdyld.dylib (750.7) /usr/lib/system/libdyld.dylib 0x7fff69749000 - 0x7fff69749ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib 0x7fff6974a000 - 0x7fff69756ff3 libkxld.dylib (6153.141.59) /usr/lib/system/libkxld.dylib 0x7fff69757000 - 0x7fff69757ff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib 0x7fff69758000 - 0x7fff6975dff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib 0x7fff6975e000 - 0x7fff69760ff3 libquarantine.dylib (110.40.6) /usr/lib/system/libquarantine.dylib 0x7fff69761000 - 0x7fff69762ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib 0x7fff69763000 - 0x7fff6977aff3 libsystem_asl.dylib (377.60.4) /usr/lib/system/libsystem_asl.dylib 0x7fff6977b000 - 0x7fff6977bff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib 0x7fff6977c000 - 0x7fff69803fff libsystem_c.dylib (1353.100.4) /usr/lib/system/libsystem_c.dylib 0x7fff69804000 - 0x7fff69807ffb libsystem_configuration.dylib (1061.141.2) /usr/lib/system/libsystem_configuration.dylib 0x7fff69808000 - 0x7fff6980bfff libsystem_coreservices.dylib (114.1) /usr/lib/system/libsystem_coreservices.dylib 0x7fff6980c000 - 0x7fff69814fff libsystem_darwin.dylib (1353.100.4) /usr/lib/system/libsystem_darwin.dylib 0x7fff69815000 - 0x7fff6981cfff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff6981d000 - 0x7fff6981effb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib 0x7fff6981f000 - 0x7fff6986cff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib 0x7fff6986d000 - 0x7fff69899ff7 libsystem_kernel.dylib (6153.141.59) /usr/lib/system/libsystem_kernel.dylib 0x7fff6989a000 - 0x7fff698e1fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib 0x7fff698e2000 - 0x7fff69909fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib 0x7fff6990a000 - 0x7fff69917ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff69918000 - 0x7fff69921ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib 0x7fff69922000 - 0x7fff6992afef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib 0x7fff6992b000 - 0x7fff69935fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib 0x7fff69936000 - 0x7fff6993aff3 libsystem_sandbox.dylib (1217.141.8) /usr/lib/system/libsystem_sandbox.dylib 0x7fff6993b000 - 0x7fff6993dfff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib 0x7fff6993e000 - 0x7fff69945ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib 0x7fff69946000 - 0x7fff6995cff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib 0x7fff6995e000 - 0x7fff69963ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib 0x7fff69964000 - 0x7fff69999ffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 7 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 60572 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%) Writable regions: Total=4.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.2G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 896K 7 Activity Tracing 256K 1 CG backing stores 1760K 2 CG image 352K 22 CoreAnimation 428K 33 CoreGraphics 8K 1 CoreImage 28K 3 CoreUI image data 3384K 28 Foundation 4K 1 IOKit 7940K 1 Kernel Alloc Once 8K 1 MALLOC 2.8G 744 MALLOC guard page 48K 9 MALLOC_MEDIUM (reserved) 768.0M 11 reserved VM address space (unallocated) Mach message 24K 3 OpenGL GLSL 384K 4 STACK GUARD 112K 28 Stack 164.7M 29 Stack Guard 56.0M 1 VM_ALLOCATE 320.6M 241 VM_ALLOCATE (reserved) 160.0M 1 reserved VM address space (unallocated) __DATA 74.5M 609 __DATA_CONST 148K 7 __FONT_DATA 4K 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 420.2M 264 __OBJC_RO 32.3M 1 __OBJC_RW 1908K 2 __TEXT 644.9M 581 __UNICODE 564K 1 mapped file 96.2M 46 shared memory 2908K 42 =========== ======= ======= TOTAL 5.5G 2726 TOTAL, minus reserved VM space 4.6G 2726 ===== Log before crash start ===== UCSF ChimeraX version: 1.7.dev202306060017 (2023-06-06) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/luca/Dropbox (Cambridge University)/RAD51/Structures/BRCA2 TR2 > on ssDNA/PDB DEPOSITION/tr2-ssDNA_05.06_real_space_refined_024-edit4.pdb"" Chain information for tr2-ssDNA_05.06_real_space_refined_024-edit4.pdb #1 --- Chain | Description A B C D E F G H I J K | No description available L M N O P Q R S T U | No description available V | No description available > hide atoms > show cartoons > set bgColor white > preset ""overall look"" ""publication 2 (depth-cued)"" Using preset: Overall Look / Publication 2 (Depth-Cued) Preset expands to these ChimeraX commands: set bg white graphics silhouettes f lighting depthCue t > select ::name=""DA""::name=""DG"" 650 atoms, 739 bonds, 30 residues, 1 model selected > hide sel cartoons > show sel atoms > style sel stick Changed 650 atom styles > color sel byhetero > select clear > ui tool show ""Show Sequence Viewer"" > sequence chain /A /B /C /D /E /F /G /H /I /J /K Alignment identifier is 1 > ui tool show ""Show Sequence Viewer"" > select #1:A,B,C,D,E,F,G,H,I,J,K Nothing selected > select #1/A,B,C,D,E,F,G,H,I,J,K 26587 atoms, 26961 bonds, 22 pseudobonds, 3454 residues, 3 models selected > ui tool show ""Color Actions"" > color sel thistle target c > select #1/L,M,N,O,P,Q,R,S,T,U 1210 atoms, 1250 bonds, 160 residues, 1 model selected > ui tool show ""Color Actions"" > color sel khaki target c > select clear > open ""/Users/luca/Dropbox (Cambridge University)/RAD51/Structures/BRCA2 TR2 > on ssDNA/2.88A TR2-ssDNA-denmod.ccp4"" Opened 2.88A TR2-ssDNA-denmod.ccp4 as #2, grid size 81,83,177, pixel 1.3, shown at level 0.996, step 1, values float32 > volume #2 level 0.3552 > select /Q:3296 9 atoms, 8 bonds, 1 residue, 1 model selected > select up 121 atoms, 125 bonds, 16 residues, 1 model selected > view sel > show sel atoms > style sel stick Changed 121 atom styles > ui tool show ""Color Actions"" > color sel khaki target c > color sel khaki target ac > color sel light goldenrod yellow target ac > color sel wheat target ac > color sel byhetero target ac > hide sel cartoons > volume surfaceSmoothing true > volume help Expected a density maps specifier or a keyword > help volume > volume subdivideSurface true > volume #2 level 0.08913 > transparency 50 > ui tool show ""Side View"" > ui tool show ""Color Actions"" > select add #2 121 atoms, 125 bonds, 16 residues, 5 models selected > select add #1 28447 atoms, 28950 bonds, 22 pseudobonds, 3644 residues, 7 models selected > select subtract #1 4 models selected > color sel light gray target s > color sel gray target s > color sel dark gray target s > color sel gray target s > color sel dim gray target s > select clear > select add #2 4 models selected > color sel gray target s > select clear > volume #2 level 0.09 > volume #2 level 0.095 > volume #2 level 0.1 > volume #2 level 0.105 > ui tool show ""Hide Dust"" > surface dust #2 size 3 > surface undust #2 > surface dust #2 size 3 > surface undust #2 > surface dust #2 size 3 > surface dust #2 size 4 > surface dust #2 size 3 > surface dust #2 size 4 > surface dust #2 size 3 > view name tr2_q > select /P 121 atoms, 125 bonds, 16 residues, 1 model selected > view sel > show sel target ab > color sel wheat target s > color sel wheat target a > style sel stick Changed 121 atom styles > color sel byhetero > hide sel cartoons > volume #2 level 0.1171 > volume #2 level 0.1413 > view name tr2_p > view tr2_q > view tr2_p > select clear > view tr2_q > volume #2 level 0.13 > volume #2 level 0.12 > volume #2 level 0.11 > volume #2 level 0.1 > view tr2_p > view tr2_q > volume #2 level 0.102 > volume #2 level 0.103 > volume #2 level 0.104 > select /Q 121 atoms, 125 bonds, 16 residues, 1 model selected > select sel : show sel atoms > ui tool show ""Color Actions"" > color sel thistle target a > style sel stick Changed 305 atom styles > color sel byhetero > select clear > select /Q 121 atoms, 125 bonds, 16 residues, 1 model selected > select sel : show sel atoms > color sel thistle target a > style sel stick Changed 439 atom styles > color sel byhetero > select clear > select /F:150 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel stick Changed 11 atom styles > color sel byhetero > color sel thistle target a > color sel byhetero target a > select clear > volume surfaceSmoothing true > volume subdivideSurface true > volume #2 level 0.105 > volume #2 level 0.106 > volume #2 level 0.11 > volume #2 level 0.12 > volume #2 level 0.11 > volume #2 level 0.12 > volume #2 level 0.125 > volume #2 level 0.13 > volume #2 level 0.14 > volume #2 level 0.135 > volume #2 level 0.12 > volume #2 level 0.11 > volume #2 level 0.1 > volume #2 level 0.09 > volume surfaceSmoothing false > volume subdivideSurface false > volume #2 level 0.1 > volume style surface > lighting simple > lighting soft > lighting simple > lighting full > volume #2 level 0.101 > volume #2 level 0.1012 > volume #2 level 0.102 > volume #2 level 0.103 > volume #2 level 0.106 > volume #2 level 0.109 > open ""/Users/luca/Dropbox (Cambridge University)/RAD51/Structures/BRCA2 TR2 > on ssDNA/Phenix/ResolveCryoEM_8/denmod_map.ccp4"" Opened denmod_map.ccp4 as #3, grid size 83,84,200, pixel 1.3, shown at level 0.926, step 1, values float32 > volume #3 level 0.5244 > volume #3 surfaceSmoothing true > volume #3 subdivideSurface true ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.7.dev202306060017 (2023-06-06) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-3.10.23 OpenGL renderer: AMD Radeon Pro Vega 48 OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.9.11 Locale: UTF-8 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac19,1 Processor Name: 8-Core Intel Core i9 Processor Speed: 3.6 GHz Number of Processors: 1 Total Number of Cores: 8 L2 Cache (per Core): 256 KB L3 Cache: 16 MB Hyper-Threading Technology: Enabled Memory: 32 GB Boot ROM Version: 1731.100.125.0.0 SMC Version (system): 2.46f13 Software: System Software Overview: System Version: macOS 10.15.7 (19H1824) Kernel Version: Darwin 19.6.0 Time since boot: 4 days 22:26 Graphics/Displays: Radeon Pro Vega 48: Chipset Model: Radeon Pro Vega 48 Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 8 GB Vendor: AMD (0x1002) Device ID: 0x6869 Revision ID: 0x0000 ROM Revision: 113-D0650E-072 VBIOS Version: 113-D05001A1XG-011 Option ROM Version: 113-D05001A1XG-011 EFI Driver Version: 01.01.072 Metal: Supported, feature set macOS GPUFamily2 v1 Displays: iMac: Display Type: Built-In Retina LCD Resolution: 5120 x 2880 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 appnope: 0.1.3 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2021.10.8 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.11 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.45.7 ChimeraX-AtomicLibrary: 10.0.7 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.10.3 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.7.dev202306060017 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.2 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.2 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.2 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.12 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.2 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.4 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.2.22 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.3 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.1 prompt-toolkit: 3.0.38 psutil: 5.9.4 ptyprocess: 0.7.0 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pyzmq: 25.1.0 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.9.3 setuptools: 67.4.0 setuptools-scm: 7.0.5 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.2 traitlets: 5.9.0 typing-extensions: 4.6.3 tzdata: 2023.3 urllib3: 2.0.2 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 zipp: 3.15.0 }}} " defect closed normal Graphics nonchimerax all ChimeraX