![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Last modified 2 years ago
#9928 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5rc202211182308 (2022-11-18 23:08:37 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x00007ff84e66f4c0 (most recent call first):
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 1647 in set_multishadow_view
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 239 in _draw_scene
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 177 in draw
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 300000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "MacBookPro15,2",
"coalitionID" : 1127,
"osVersion" : {
"train" : "macOS 13.0.1",
"build" : "22A400",
"releaseType" : "User"
},
"captureTime" : "2023-10-08 16:13:13.2200 +0200",
"incident" : "AD2EFDD4-982D-4A67-8E0B-96873BCF3ECF",
"pid" : 52603,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-10-08 15:47:41.7390 +0200",
"procStartAbsTime" : 304040355125521,
"procExitAbsTime" : 305571839378354,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.5.0","CFBundleVersion":"1.5.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"4118825E-EA91-5E09-A29F-34B7D8399597","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "DAE5A66E-5B02-652B-9AB4-D1348B2E5EC8",
"wakeTime" : 2456,
"bridgeVersion" : {"build":"20P420","train":"7.0"},
"sleepWakeUUID" : "5D4015F2-A9FE-4E85-AE63-507327750F44",
"sip" : "enabled",
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
"asi" : {"libsystem_c.dylib":["abort() called"]},
"asiSignatures" : ["Graphics hardware encountered an error and was reset: 0x00000011\n"],
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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"base" : 140707827527680,
"size" : 45048,
"uuid" : "7d9c3a7b-8be1-3221-b85d-a05c3a505598",
"path" : "\/System\/Library\/PrivateFrameworks\/GPUSupport.framework\/Versions\/A\/Libraries\/libGPUSupportMercury.dylib",
"name" : "libGPUSupportMercury.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140712116416512,
"CFBundleShortVersionString" : "20.2.44",
"CFBundleIdentifier" : "com.apple.driver.AppleIntelKBLGraphicsGLDriver",
"size" : 16039936,
"uuid" : "6aaee0c0-2a74-385e-b06f-2d22812274fa",
"path" : "\/System\/Library\/Extensions\/AppleIntelKBLGraphicsGLDriver.bundle\/Contents\/MacOS\/AppleIntelKBLGraphicsGLDriver",
"name" : "AppleIntelKBLGraphicsGLDriver",
"CFBundleVersion" : "20.0.2"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140712241872896,
"size" : 1613816,
"uuid" : "72abfc77-407e-360a-9db4-05d8f10be643",
"path" : "\/System\/Library\/Frameworks\/OpenGL.framework\/Versions\/A\/Resources\/GLEngine.bundle\/GLEngine",
"name" : "GLEngine"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703566897152,
"size" : 24544,
"uuid" : "fcf97ef0-dbaf-333c-b3de-663c59f2d727",
"path" : "\/usr\/lib\/libffi.dylib",
"name" : "libffi.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4440457216,
"size" : 64028672,
"uuid" : "24c9d5c5-4854-3af4-9550-cb0204044dfa",
"path" : "\/Applications\/ChimeraX.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 4952887296,
"size" : 165052416,
"uuid" : "4aa1de3e-464c-340c-ab61-bcd39bfc7658",
"path" : "\/Applications\/ChimeraX.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "x86_64h",
"base" : 140703310675968,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 4820992,
"uuid" : "dbc459f3-81bb-398a-8f74-3f7392392bb7",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "1953.1"
},
{
"source" : "P",
"arch" : "x86_64",
"base" : 140703362453504,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 16797687,
"uuid" : "817d572e-eb8c-3999-b7a0-68e1c4b47266",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2299"
}
],
"sharedCache" : {
"base" : 140703306321920,
"size" : 21474836480,
"uuid" : "840e528a-0c70-3c6a-b7b4-4f05f32ccc51"
},
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "63a0a6cfd1cdb67d083006d0",
"factorPackIds" : {
},
"deploymentId" : 240000003
},
{
"rolloutId" : "6297d96be2c9387df974efa4",
"factorPackIds" : {
},
"deploymentId" : 240000014
}
],
"experiments" : [
{
"treatmentId" : "6dd670af-0633-45e4-ae5f-122ae4df02be",
"experimentId" : "64406ba83deb637ac8a04419",
"deploymentId" : 900000017
}
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.5rc202211182308 (2022-11-18)
© 2016-2022 Regents of the University of California. All rights reserved.
> open
> /Users/fadlof/Downloads/ModelBuilding/ModelBuilding_20SCP_preholo_v2/ChimeraX/Structure_20SCP_preholo_model_building.cxs
Opened cryosparc_P109_J413_map_sharp.mrc as #1, grid size 168,168,168, pixel
1.88, shown at level 0.126, step 1, values float32
Log from Wed Oct 4 16:50:44 2023UCSF ChimeraX version: 1.5rc202211182308
(2022-11-18)
© 2016-2022 Regents of the University of California. All rights reserved.
> open
> /Users/fadlof/Downloads/ModelBuilding/Old_ModelBuilding_preholo-20SCP/ChimeraX_scessions/Structure_20SCP_preholo_model_building.cxs
Opened cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc as #3, grid
size 168,168,168, pixel 1.88, shown at level 0.095, step 1, values float32
Log from Mon Oct 2 19:49:22 2023UCSF ChimeraX version: 1.5rc202211182308
(2022-11-18)
© 2016-2022 Regents of the University of California. All rights reserved.
> open
> /Users/fadlof/Downloads/ModelBuilding/ModelBuilding_preholo-20SCP/ChimeraX_scessions/Structure_20SCP_preholo_model_building.cxs
Opened cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc as #1, grid
size 168,168,168, pixel 1.88, shown at level 0.095, step 1, values float32
Log from Thu Sep 21 14:08:58 2023UCSF ChimeraX version: 1.5rc202211182308
(2022-11-18)
© 2016-2022 Regents of the University of California. All rights reserved.
> open
> /Users/fadlof/Downloads/20SCP_preholo/ChimeraX_scessions/Structure_20SCP_preholo_model_building.cxs
Opened cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc as #1, grid
size 168,168,168, pixel 1.88, shown at level 0.172, step 1, values float32
Log from Tue Sep 19 12:38:57 2023UCSF ChimeraX version: 1.5rc202211182308
(2022-11-18)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_docking.pdb
Chain information for Structure_20SCP_preholo_docking.pdb #1
---
Chain | Description
A R | No description available
B S | No description available
C T | No description available
D U | No description available
E V | No description available
F W | No description available
G X | No description available
H Y | No description available
I Z | No description available
J a | No description available
K b | No description available
L c | No description available
M d | No description available
N e | No description available
O f | No description available
P g | No description available
Q h | No description available
> open /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP.pdb
Chain information for Structure_20SCP.pdb #2
---
Chain | Description
A O | No description available
B P | No description available
C Q | No description available
D R | No description available
E S | No description available
F T | No description available
G U | No description available
H V | No description available
I W | No description available
J X | No description available
K Y | No description available
L Z | No description available
M a | No description available
N b | No description available
> open
> /Users/fadlof/Downloads/20SCP_preholo/cryosparc_P231_J111_preholo_map_auto_sharp.mrc
Opened cryosparc_P231_J111_preholo_map_auto_sharp.mrc as #3, grid size
168,168,168, pixel 1.88, shown at level 0.701, step 1, values float32
> open
> /Users/fadlof/Downloads/20SCP_preholo/cryosparc_P231_J111_preholo_map.mrc
Opened cryosparc_P231_J111_preholo_map.mrc as #4, grid size 168,168,168, pixel
1.88, shown at level 0.566, step 1, values float32
> open
> /Users/fadlof/Downloads/20SCP_preholo/cryosparc_P231_J118_preholo_auto_sharp_deepEmhancer.mrc
Opened cryosparc_P231_J118_preholo_auto_sharp_deepEmhancer.mrc as #5, grid
size 168,168,168, pixel 1.88, shown at level 0.114, step 1, values float32
> open
> /Users/fadlof/Downloads/20SCP_preholo/cryosparc_P231_J119_preholo_map_manual_sharp.mrc
Opened cryosparc_P231_J119_preholo_map_manual_sharp.mrc as #6, grid size
168,168,168, pixel 1.88, shown at level 0.643, step 1, values float32
> open
> /Users/fadlof/Downloads/20SCP_preholo/cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
Opened cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc as #7, grid
size 168,168,168, pixel 1.88, shown at level 0.128, step 1, values float32
> set bgColor white
> hide #!3 models
> hide #!4 models
> hide #!5 models
> show #!5 models
> hide #!6 models
> hide #!7 models
> show #!6 models
> hide #!5 models
> hide #!6 models
> hide atoms
> show cartoons
> hide #!1 models
> hide #!2 models
> show #!2 models
> show #!1 models
> show #!3 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> select add #2
48138 atoms, 49002 bonds, 2 pseudobonds, 6222 residues, 2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.65458,0.60451,0.45398,-120.37,-0.12097,0.67652,-0.72642,197.57,-0.74625,0.42058,0.51597,136.54
> view matrix models
> #2,0.12256,0.98523,0.11957,-38.229,0.6628,0.0084217,-0.74875,182.24,-0.7387,0.17102,-0.65198,376.05
> view matrix models
> #2,-0.1587,0.78422,0.59985,-40.532,0.78866,0.4662,-0.40085,26.322,-0.594,0.40946,-0.69246,319.62
> view matrix models
> #2,-0.25401,0.89761,0.36025,-2.5906,0.84155,0.38869,-0.3751,25.992,-0.47672,0.20789,-0.85412,361.17
> view matrix models
> #2,0.033257,0.99943,0.0059249,-6.3985,0.82662,-0.024173,-0.56223,128.68,-0.56177,0.023596,-0.82696,401.06
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.033257,0.99943,0.0059249,-18.925,0.82662,-0.024173,-0.56223,112.46,-0.56177,0.023596,-0.82696,403.14
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.47872,0.7678,-0.4258,177.77,0.87622,0.3872,-0.28692,-10.78,-0.055429,-0.51044,-0.85812,413.04
> view matrix models
> #2,-0.37483,0.92396,-0.076183,75.052,0.91252,0.3822,0.14571,-89.856,0.16375,-0.014903,-0.98639,316.78
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.37483,0.92396,-0.076183,77.126,0.91252,0.3822,0.14571,-75.547,0.16375,-0.014903,-0.98639,311.9
> ui tool show "Fit in Map"
> fitmap #2 inMap #3
Fit molecule Structure_20SCP.pdb (#2) to map
cryosparc_P231_J111_preholo_map_auto_sharp.mrc (#3) using 48138 atoms
average map value = 0.8409, steps = 84
shifted from previous position = 6.85
rotated from previous position = 10.1 degrees
atoms outside contour = 19008, contour level = 0.70134
Position of Structure_20SCP.pdb (#2) relative to
cryosparc_P231_J111_preholo_map_auto_sharp.mrc (#3) coordinates:
Matrix rotation and translation
-0.43603141 0.89993144 0.00002085 81.62106561
0.89993144 0.43603141 0.00000761 -62.56733014
-0.00000224 0.00002208 -1.00000000 341.51039108
Axis 0.53100528 0.84736851 0.00000595
Axis point 60.41588101 0.00000000 170.75506650
Rotation angle (degrees) 179.99921932
Shift along axis -9.67433581
> select subtract #2
Nothing selected
> hide #!3 models
> split #2
Split Structure_20SCP.pdb (#2) into 28 models
Chain information for Structure_20SCP.pdb A #2.1
---
Chain | Description
A | No description available
Chain information for Structure_20SCP.pdb B #2.2
---
Chain | Description
B | No description available
Chain information for Structure_20SCP.pdb C #2.3
---
Chain | Description
C | No description available
Chain information for Structure_20SCP.pdb D #2.4
---
Chain | Description
D | No description available
Chain information for Structure_20SCP.pdb E #2.5
---
Chain | Description
E | No description available
Chain information for Structure_20SCP.pdb F #2.6
---
Chain | Description
F | No description available
Chain information for Structure_20SCP.pdb G #2.7
---
Chain | Description
G | No description available
Chain information for Structure_20SCP.pdb H #2.8
---
Chain | Description
H | No description available
Chain information for Structure_20SCP.pdb I #2.9
---
Chain | Description
I | No description available
Chain information for Structure_20SCP.pdb J #2.10
---
Chain | Description
J | No description available
Chain information for Structure_20SCP.pdb K #2.11
---
Chain | Description
K | No description available
Chain information for Structure_20SCP.pdb L #2.12
---
Chain | Description
L | No description available
Chain information for Structure_20SCP.pdb M #2.13
---
Chain | Description
M | No description available
Chain information for Structure_20SCP.pdb N #2.14
---
Chain | Description
N | No description available
Chain information for Structure_20SCP.pdb O #2.15
---
Chain | Description
O | No description available
Chain information for Structure_20SCP.pdb P #2.16
---
Chain | Description
P | No description available
Chain information for Structure_20SCP.pdb Q #2.17
---
Chain | Description
Q | No description available
Chain information for Structure_20SCP.pdb R #2.18
---
Chain | Description
R | No description available
Chain information for Structure_20SCP.pdb S #2.19
---
Chain | Description
S | No description available
Chain information for Structure_20SCP.pdb T #2.20
---
Chain | Description
T | No description available
Chain information for Structure_20SCP.pdb U #2.21
---
Chain | Description
U | No description available
Chain information for Structure_20SCP.pdb V #2.22
---
Chain | Description
V | No description available
Chain information for Structure_20SCP.pdb W #2.23
---
Chain | Description
W | No description available
Chain information for Structure_20SCP.pdb X #2.24
---
Chain | Description
X | No description available
Chain information for Structure_20SCP.pdb Y #2.25
---
Chain | Description
Y | No description available
Chain information for Structure_20SCP.pdb Z #2.26
---
Chain | Description
Z | No description available
Chain information for Structure_20SCP.pdb a #2.27
---
Chain | Description
a | No description available
Chain information for Structure_20SCP.pdb b #2.28
---
Chain | Description
b | No description available
> split #1
Split Structure_20SCP_preholo_docking.pdb (#1) into 34 models
Chain information for Structure_20SCP_preholo_docking.pdb A #1.1
---
Chain | Description
A | No description available
Chain information for Structure_20SCP_preholo_docking.pdb B #1.2
---
Chain | Description
B | No description available
Chain information for Structure_20SCP_preholo_docking.pdb C #1.3
---
Chain | Description
C | No description available
Chain information for Structure_20SCP_preholo_docking.pdb D #1.4
---
Chain | Description
D | No description available
Chain information for Structure_20SCP_preholo_docking.pdb E #1.5
---
Chain | Description
E | No description available
Chain information for Structure_20SCP_preholo_docking.pdb F #1.6
---
Chain | Description
F | No description available
Chain information for Structure_20SCP_preholo_docking.pdb G #1.7
---
Chain | Description
G | No description available
Chain information for Structure_20SCP_preholo_docking.pdb H #1.8
---
Chain | Description
H | No description available
Chain information for Structure_20SCP_preholo_docking.pdb I #1.9
---
Chain | Description
I | No description available
Chain information for Structure_20SCP_preholo_docking.pdb J #1.10
---
Chain | Description
J | No description available
Chain information for Structure_20SCP_preholo_docking.pdb K #1.11
---
Chain | Description
K | No description available
Chain information for Structure_20SCP_preholo_docking.pdb L #1.12
---
Chain | Description
L | No description available
Chain information for Structure_20SCP_preholo_docking.pdb M #1.13
---
Chain | Description
M | No description available
Chain information for Structure_20SCP_preholo_docking.pdb N #1.14
---
Chain | Description
N | No description available
Chain information for Structure_20SCP_preholo_docking.pdb O #1.15
---
Chain | Description
O | No description available
Chain information for Structure_20SCP_preholo_docking.pdb P #1.16
---
Chain | Description
P | No description available
Chain information for Structure_20SCP_preholo_docking.pdb Q #1.17
---
Chain | Description
Q | No description available
Chain information for Structure_20SCP_preholo_docking.pdb R #1.18
---
Chain | Description
R | No description available
Chain information for Structure_20SCP_preholo_docking.pdb S #1.19
---
Chain | Description
S | No description available
Chain information for Structure_20SCP_preholo_docking.pdb T #1.20
---
Chain | Description
T | No description available
Chain information for Structure_20SCP_preholo_docking.pdb U #1.21
---
Chain | Description
U | No description available
Chain information for Structure_20SCP_preholo_docking.pdb V #1.22
---
Chain | Description
V | No description available
Chain information for Structure_20SCP_preholo_docking.pdb W #1.23
---
Chain | Description
W | No description available
Chain information for Structure_20SCP_preholo_docking.pdb X #1.24
---
Chain | Description
X | No description available
Chain information for Structure_20SCP_preholo_docking.pdb Y #1.25
---
Chain | Description
Y | No description available
Chain information for Structure_20SCP_preholo_docking.pdb Z #1.26
---
Chain | Description
Z | No description available
Chain information for Structure_20SCP_preholo_docking.pdb a #1.27
---
Chain | Description
a | No description available
Chain information for Structure_20SCP_preholo_docking.pdb b #1.28
---
Chain | Description
b | No description available
Chain information for Structure_20SCP_preholo_docking.pdb c #1.29
---
Chain | Description
c | No description available
Chain information for Structure_20SCP_preholo_docking.pdb d #1.30
---
Chain | Description
d | No description available
Chain information for Structure_20SCP_preholo_docking.pdb e #1.31
---
Chain | Description
e | No description available
Chain information for Structure_20SCP_preholo_docking.pdb f #1.32
---
Chain | Description
f | No description available
Chain information for Structure_20SCP_preholo_docking.pdb g #1.33
---
Chain | Description
g | No description available
Chain information for Structure_20SCP_preholo_docking.pdb h #1.34
---
Chain | Description
h | No description available
> close #3
> close #4
> close #5
> close #6
> color #7 silver models
> show #!7 models
> hide #!7 models
> show #1.1 models
> hide #1.1 models
> show #1.1 models
> hide #1.1 models
> select add #1.1
1727 atoms, 1766 bonds, 229 residues, 1 model selected
> show #1.1 models
> show #!1.2 models
> select add #1.2
3489 atoms, 3555 bonds, 1 pseudobond, 471 residues, 3 models selected
> show #1.3 models
> select add #1.3
5221 atoms, 5310 bonds, 1 pseudobond, 704 residues, 4 models selected
> show #!1.4 models
> select add #1.4
6968 atoms, 7085 bonds, 2 pseudobonds, 939 residues, 6 models selected
> show #1.5 models
> select add #1.5
8800 atoms, 8952 bonds, 2 pseudobonds, 1177 residues, 7 models selected
> show #1.6 models
> select add #1.6
10634 atoms, 10821 bonds, 2 pseudobonds, 1417 residues, 8 models selected
> show #1.7 models
> select add #1.7
12472 atoms, 12692 bonds, 2 pseudobonds, 1661 residues, 9 models selected
> show #1.8 models
> select add #1.8
13373 atoms, 13608 bonds, 2 pseudobonds, 1774 residues, 10 models selected
> show #!1.9 models
> select add #1.9
15367 atoms, 15644 bonds, 5 pseudobonds, 2038 residues, 12 models selected
> show #!1.10 models
> select add #1.10
17250 atoms, 17567 bonds, 7 pseudobonds, 2286 residues, 14 models selected
> show #!1.11 models
> select add #1.11
18887 atoms, 19232 bonds, 10 pseudobonds, 2515 residues, 16 models selected
> hide #!1.11 models
> select subtract #1.11
17250 atoms, 17567 bonds, 7 pseudobonds, 2286 residues, 14 models selected
> show #!1.17 models
> select add #1.17
18669 atoms, 19011 bonds, 10 pseudobonds, 2476 residues, 16 models selected
> select subtract #1.17
17250 atoms, 17567 bonds, 7 pseudobonds, 2286 residues, 14 models selected
> hide #!1.17 models
> show #!1.11 models
> select add #1.11
18887 atoms, 19232 bonds, 10 pseudobonds, 2515 residues, 16 models selected
> show #1.18 models
> select add #1.18
20614 atoms, 20998 bonds, 10 pseudobonds, 2744 residues, 17 models selected
> hide #!2 models
> show #!1.19 models
> select add #1.19
22376 atoms, 22787 bonds, 11 pseudobonds, 2986 residues, 19 models selected
> show #1.20 models
> select add #1.20
24108 atoms, 24542 bonds, 11 pseudobonds, 3219 residues, 20 models selected
> show #!1.21 models
> select add #1.21
25855 atoms, 26317 bonds, 12 pseudobonds, 3454 residues, 22 models selected
> show #1.22 models
> select add #1.22
27687 atoms, 28184 bonds, 12 pseudobonds, 3692 residues, 23 models selected
> show #1.23 models
> select add #1.23
29521 atoms, 30053 bonds, 12 pseudobonds, 3932 residues, 24 models selected
> show #1.24 models
> select add #1.24
31359 atoms, 31924 bonds, 12 pseudobonds, 4176 residues, 25 models selected
> show #1.25 models
> select add #1.25
32260 atoms, 32840 bonds, 12 pseudobonds, 4289 residues, 26 models selected
> show #!1.26 models
> select add #1.26
34254 atoms, 34876 bonds, 15 pseudobonds, 4553 residues, 28 models selected
> show #!1.27 models
> select add #1.27
36137 atoms, 36799 bonds, 17 pseudobonds, 4801 residues, 30 models selected
> show #!1.28 models
> hide #!1.28 models
> show #!1.28 models
> hide #2.1 models
> show #!2 models
> hide #!2 models
> hide #2.2 models
> show #2.2 models
> hide #2.3 models
> hide #2.2 models
> hide #!2 models
> hide #!2.4 models
> hide #2.5 models
> hide #2.6 models
> hide #2.7 models
> hide #2.8 models
> hide #2.9 models
> hide #2.10 models
> hide #2.11 models
> hide #2.12 models
> hide #2.13 models
> hide #2.14 models
> hide #2.15 models
> hide #2.16 models
> hide #2.17 models
> hide #!2.18 models
> hide #2.19 models
> hide #2.20 models
> hide #2.21 models
> hide #2.22 models
> hide #2.23 models
> hide #2.24 models
> hide #2.25 models
> hide #2.26 models
> hide #2.27 models
> hide #2.28 models
> show #2.1 models
> hide #2.1 models
> show #2.8 models
> hide #2.8 models
> show #2.9 models
> select add #2.9
37728 atoms, 38419 bonds, 17 pseudobonds, 5005 residues, 31 models selected
> show #2.10 models
> select add #2.10
39289 atoms, 40012 bonds, 17 pseudobonds, 5201 residues, 32 models selected
> show #2.11 models
> select add #2.11
40832 atoms, 41586 bonds, 17 pseudobonds, 5402 residues, 33 models selected
> show #2.12 models
> select add #2.12
42482 atoms, 43266 bonds, 17 pseudobonds, 5615 residues, 34 models selected
> show #2.13 models
> select add #2.13
44168 atoms, 44985 bonds, 17 pseudobonds, 5831 residues, 35 models selected
> show #2.14 models
> select add #2.14
45682 atoms, 46526 bonds, 17 pseudobonds, 6034 residues, 36 models selected
> show #2.15 models
> hide #2.15 models
> show #2.22 models
> hide #2.22 models
> show #2.22 models
> hide #2.22 models
> show #2.22 models
> hide #2.22 models
> show #2.22 models
> hide #2.22 models
> show #2.22 models
> hide #2.22 models
> show #2.23 models
> select add #2.23
47273 atoms, 48146 bonds, 17 pseudobonds, 6238 residues, 37 models selected
> show #2.24 models
> select add #2.24
48834 atoms, 49739 bonds, 17 pseudobonds, 6434 residues, 38 models selected
> show #2.25 models
> select add #2.25
50377 atoms, 51313 bonds, 17 pseudobonds, 6635 residues, 39 models selected
> show #2.26 models
> select add #2.26
52027 atoms, 52993 bonds, 17 pseudobonds, 6848 residues, 40 models selected
> show #2.27 models
> select add #2.27
53713 atoms, 54712 bonds, 17 pseudobonds, 7064 residues, 41 models selected
> show #2.28 models
> select add #2.28
55227 atoms, 56253 bonds, 17 pseudobonds, 7267 residues, 42 models selected
> hide #!1.11 models
> show #!1.11 models
> hide #!1.11 models
> show #!1.11 models
> hide #!1.11 models
> select subtract #1.11
53590 atoms, 54588 bonds, 14 pseudobonds, 7038 residues, 40 models selected
> hide #!1.28 models
> show #2.15 models
> select add #2.15
55365 atoms, 56402 bonds, 14 pseudobonds, 7267 residues, 41 models selected
> select subtract #2.15
53590 atoms, 54588 bonds, 14 pseudobonds, 7038 residues, 40 models selected
> select add #2.15
55365 atoms, 56402 bonds, 14 pseudobonds, 7267 residues, 41 models selected
> select subtract #2.15
53590 atoms, 54588 bonds, 14 pseudobonds, 7038 residues, 40 models selected
> hide #2.15 models
> show #2.8 models
> select add #2.8
55249 atoms, 56274 bonds, 14 pseudobonds, 7258 residues, 41 models selected
> show #2.22 models
> select add #2.22
56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 42 models selected
> combine sel
Remapping chain ID 'H' in Structure_20SCP.pdb H #2.8 to 'K'
Remapping chain ID 'I' in Structure_20SCP.pdb I #2.9 to 'L'
Remapping chain ID 'J' in Structure_20SCP.pdb J #2.10 to 'M'
Remapping chain ID 'K' in Structure_20SCP.pdb K #2.11 to 'N'
Remapping chain ID 'L' in Structure_20SCP.pdb L #2.12 to 'O'
Remapping chain ID 'M' in Structure_20SCP.pdb M #2.13 to 'P'
Remapping chain ID 'N' in Structure_20SCP.pdb N #2.14 to 'Q'
Remapping chain ID 'V' in Structure_20SCP.pdb V #2.22 to 'b'
Remapping chain ID 'W' in Structure_20SCP.pdb W #2.23 to 'c'
Remapping chain ID 'X' in Structure_20SCP.pdb X #2.24 to 'd'
Remapping chain ID 'Y' in Structure_20SCP.pdb Y #2.25 to 'e'
Remapping chain ID 'Z' in Structure_20SCP.pdb Z #2.26 to 'f'
Remapping chain ID 'a' in Structure_20SCP.pdb a #2.27 to 'g'
Remapping chain ID 'b' in Structure_20SCP.pdb b #2.28 to 'h'
> select add #3
113816 atoms, 115920 bonds, 28 pseudobonds, 14956 residues, 44 models selected
> select add #2
139546 atoms, 142096 bonds, 30 pseudobonds, 18272 residues, 61 models selected
> select subtract #2
91408 atoms, 93094 bonds, 28 pseudobonds, 12050 residues, 30 models selected
> select add #1
111298 atoms, 113334 bonds, 54 pseudobonds, 14752 residues, 57 models selected
> select subtract #1
56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 2 models selected
> hide #!2 models
> hide #!1 models
> select subtract #3
Nothing selected
> show #!7 models
> color zone #7 near #3 distance 11.3
> ui tool show "Side View"
> hide #!3 models
> rename #3 Structure_20SCP_preholo_docked_mature-beta-subunits
> select add #2
48138 atoms, 49002 bonds, 2 pseudobonds, 6222 residues, 31 models selected
> select add #1
102528 atoms, 104376 bonds, 42 pseudobonds, 13496 residues, 86 models selected
> select subtract #2
54390 atoms, 55374 bonds, 40 pseudobonds, 7274 residues, 55 models selected
> hide #!7 models
> show #!1 models
> show #!1.11 models
> show #!1.12 models
> show #1.13 models
> show #!1.14 models
> hide #!1.14 models
> show #!1.15 models
> show #!1.16 models
> show #!1.17 models
> show #!1.14 models
> hide #!1 models
> show #!1 models
> show #!1.28 models
> show #!1.29 models
> show #1.30 models
> show #!1.31 models
> show #!1.32 models
> hide #!1.32 models
> show #!1.33 models
> show #!1.34 models
> show #!1.32 models
> show #!2 models
> hide #!2 models
> combine sel
> show #!7 models
Color zone shortcut requires 1 displayed atomic model and 1 map, got 35 atomic
models, 1 maps.
> hide #!4 models
> show #!4 models
> hide #!1 models
> select subtract #1
Nothing selected
> color zone #7 near #4 distance 11.3
> show #!3 models
> hide #!4 models
> color zone #7 near #3 distance 11.3
> transparency 50
> rename #4 Structure_20SCP_preholo_mature_beta-subunits_docked
> rename #3 "Structure_20SCP_preholo_mature_beta-subunits_docked_split "
> hide #!3 models
> hide #!7 models
> show #!4 models
> save
> /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_mature_beta-
> subunits_docking.pdb
> close #2
> rename #1 id #2
> rename #7 id #1
> show #!1 models
> show #!2 models
> transparency 0
> hide #!2 models
> show #!3 models
> hide #!3 models
> hide #!4 models
> show #!4 models
> hide #!1 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> show #!4 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!4 models
> show #!4 models
> show #!2 models
> show #!3 models
> hide #!4 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> show #!4 models
> hide #!4 models
> show #!2 models
> show #!4 models
> select add #4
54390 atoms, 55374 bonds, 40 pseudobonds, 7274 residues, 2 models selected
> select subtract #4
Nothing selected
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!4 models
> hide #!2 models
> show #!2 models
> rename #2 Structure_20SCP_preholo_docked.pdb
> open
> /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_mature_beta-
> subunits_docking.pdb
Summary of feedback from opening
/Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_mature_beta-
subunits_docking.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 VAL A 20
ALA A 30 1 11
Start residue of secondary structure not found: HELIX 2 2 GLY A 80 TYR A 101 1
22
Start residue of secondary structure not found: HELIX 3 3 THR A 107 THR A 122
1 16
Start residue of secondary structure not found: HELIX 4 4 TYR A 167 ARG A 177
1 11
Start residue of secondary structure not found: HELIX 5 5 LEU A 184 SER A 198
1 15
955 messages similar to the above omitted
Chain information for Structure_20SCP_preholo_mature_beta-subunits_docking.pdb
---
Chain | Description
5.1/A 5.29/A 5.63/A 5.64/A 5.15/O 5.46/R 5.63/R 5.64/R | No description
available
5.2/B 5.16/P | No description available
5.30/B 5.63/B 5.64/B 5.47/S 5.63/S 5.64/S | No description available
5.3/C 5.17/Q | No description available
5.31/C 5.63/C 5.64/C 5.48/T 5.63/T 5.64/T | No description available
5.4/D 5.18/R | No description available
5.32/D 5.63/D 5.64/D 5.49/U 5.63/U 5.64/U | No description available
5.5/E 5.19/S | No description available
5.33/E 5.63/E 5.64/E 5.50/V 5.63/V 5.64/V | No description available
5.6/F 5.20/T | No description available
5.34/F 5.63/F 5.64/F 5.51/W 5.63/W 5.64/W | No description available
5.7/G 5.21/U | No description available
5.35/G 5.63/G 5.64/G 5.52/X 5.63/X 5.64/X | No description available
5.8/H 5.63/K 5.22/V 5.63/b | No description available
5.36/H 5.63/H 5.64/H 5.53/Y 5.63/Y 5.64/Y | No description available
5.9/I 5.63/L 5.23/W 5.63/c | No description available
5.37/I 5.63/I 5.64/I 5.54/Z 5.63/Z 5.64/Z | No description available
5.10/J 5.41/M 5.63/M 5.64/M 5.24/X 5.58/d 5.63/d 5.64/d | No description
available
5.38/J 5.63/J 5.64/J 5.55/a 5.63/a 5.64/a | No description available
5.11/K 5.63/N 5.25/Y 5.63/e | No description available
5.39/K 5.64/K 5.56/b 5.64/b | No description available
5.12/L 5.63/O 5.26/Z 5.63/f | No description available
5.40/L 5.64/L 5.57/c 5.64/c | No description available
5.13/M 5.63/P 5.27/a 5.63/g | No description available
5.14/N 5.63/Q 5.28/b 5.63/h | No description available
5.42/N 5.64/N 5.59/e 5.64/e | No description available
5.43/O 5.64/O 5.60/f 5.64/f | No description available
5.44/P 5.64/P 5.61/g 5.64/g | No description available
5.45/Q 5.64/Q 5.62/h 5.64/h | No description available
> hide
> #2.1,3,5-8,13,18,20,22-25,30#5.1-3,5-17,19-29,31,33-36,41,46,48,50-53,58#!2.2,4,9-12,14-17,19,21,26-29,31-34#!5.4,18,30,32,37-40,42-45,47,49,54-57,59-64
> atoms
> hide
> #2.1,3,5-8,13,18,20,22-25,30#5.1-3,5-17,19-29,31,33-36,41,46,48,50-53,58#!2.2,4,9-12,14-17,19,21,26-29,31-34#!5.4,18,30,32,37-40,42-45,47,49,54-57,59-64
> cartoons
> show
> #2.1,3,5-8,13,18,20,22-25,30#5.1-3,5-17,19-29,31,33-36,41,46,48,50-53,58#!2.2,4,9-12,14-17,19,21,26-29,31-34#!5.4,18,30,32,37-40,42-45,47,49,54-57,59-64
> cartoons
> style
> #2.1,3,5-8,13,18,20,22-25,30#5.1-3,5-17,19-29,31,33-36,41,46,48,50-53,58#!2.2,4,9-12,14-17,19,21,26-29,31-34#!5.4,18,30,32,37-40,42-45,47,49,54-57,59-64
> stick
Changed 268216 atom styles
> hide #!5 models
> close #5
> rename #2 Structure_20SCP_preholo_2xMap5_docked.pdb
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> show #!4 models
> hide #!4 models
> hide #!2 models
> show #!4 models
> hide #!4 models
> show #!4 models
> close #4
> split #3
Split Structure_20SCP_preholo_mature_beta-subunits_docked_split (#3) into 34
models
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split A #3.1
---
Chain | Description
A | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split B #3.2
---
Chain | Description
B | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split C #3.3
---
Chain | Description
C | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split D #3.4
---
Chain | Description
D | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split E #3.5
---
Chain | Description
E | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split F #3.6
---
Chain | Description
F | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split G #3.7
---
Chain | Description
G | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split H #3.8
---
Chain | Description
H | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split I #3.9
---
Chain | Description
I | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split J #3.10
---
Chain | Description
J | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split K #3.11
---
Chain | Description
K | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split L #3.12
---
Chain | Description
L | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split M #3.13
---
Chain | Description
M | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split N #3.14
---
Chain | Description
N | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split O #3.15
---
Chain | Description
O | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split P #3.16
---
Chain | Description
P | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split Q #3.17
---
Chain | Description
Q | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split R #3.18
---
Chain | Description
R | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split S #3.19
---
Chain | Description
S | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split T #3.20
---
Chain | Description
T | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split U #3.21
---
Chain | Description
U | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split V #3.22
---
Chain | Description
V | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split W #3.23
---
Chain | Description
W | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split X #3.24
---
Chain | Description
X | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split Y #3.25
---
Chain | Description
Y | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split Z #3.26
---
Chain | Description
Z | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split a #3.27
---
Chain | Description
a | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split b #3.28
---
Chain | Description
b | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split c #3.29
---
Chain | Description
c | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split d #3.30
---
Chain | Description
d | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split e #3.31
---
Chain | Description
e | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split f #3.32
---
Chain | Description
f | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split g #3.33
---
Chain | Description
g | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_split h #3.34
---
Chain | Description
h | No description available
> show #!1 models
> transparency 50
> select add #3.1
1727 atoms, 1766 bonds, 229 residues, 1 model selected
> combine #2
> select add #3
56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 43 models selected
> select subtract #3
Nothing selected
> hide #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> close #2
> rename #3 Structure_20SCP_preholo_mature_beta-subunits_docked
> rename #4 Structure_20SCP_preholo_2xMap5_docked
> rename #4 id #2
> show #!3 models
> select add #3
56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 43 models selected
> select subtract #3
Nothing selected
> select add #3.1
1727 atoms, 1766 bonds, 229 residues, 1 model selected
> open
> /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_Map5x2_docked.pdb
Chain information for Structure_20SCP_preholo_Map5x2_docked.pdb #4
---
Chain | Description
A R | No description available
B S | No description available
C T | No description available
D U | No description available
E V | No description available
F W | No description available
G X | No description available
H Y | No description available
I Z | No description available
J a | No description available
K b | No description available
L c | No description available
M d | No description available
N e | No description available
O f | No description available
P g | No description available
Q h | No description available
> hide #!4 models
> close #4
> fitmap #3.1 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split A
(#3.1) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1727 atoms
average map value = 0.3128, steps = 44
shifted from previous position = 0.22
rotated from previous position = 0.438 degrees
atoms outside contour = 378, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split A (#3.1)
relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
coordinates:
Matrix rotation and translation
0.99999366 0.00330766 -0.00132116 -0.14380031
-0.00331653 0.99997159 -0.00676931 1.36502836
0.00129874 0.00677365 0.99997622 -0.92005519
Axis 0.88503674 -0.17121145 -0.43289331
Axis point 0.00000000 134.15368166 202.03015126
Rotation angle (degrees) 0.43837830
Shift along axis 0.03730868
> select add #3
56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 43 models selected
> select subtract #3
Nothing selected
> select add #3.2
1762 atoms, 1789 bonds, 1 pseudobond, 242 residues, 2 models selected
> fitmap #3.2 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split B
(#3.2) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1762 atoms
average map value = 0.3063, steps = 48
shifted from previous position = 0.208
rotated from previous position = 0.132 degrees
atoms outside contour = 380, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split B (#3.2)
relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
coordinates:
Matrix rotation and translation
0.99999736 0.00168742 -0.00156034 0.06358106
-0.00168724 0.99999857 0.00011938 0.02704562
0.00156054 -0.00011675 0.99999878 -0.28530675
Axis -0.05130437 -0.67806866 -0.73320581
Axis point 91.45420342 -43.23971739 0.00000000
Rotation angle (degrees) 0.13185507
Shift along axis 0.18758779
> select add #3.3
3494 atoms, 3544 bonds, 1 pseudobond, 475 residues, 3 models selected
> select subtract #3.2
1732 atoms, 1755 bonds, 233 residues, 1 model selected
> fitmap #3.3 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split C
(#3.3) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1732 atoms
average map value = 0.2874, steps = 44
shifted from previous position = 0.0824
rotated from previous position = 0.704 degrees
atoms outside contour = 431, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split C (#3.3)
relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
coordinates:
Matrix rotation and translation
0.99993794 0.01083104 0.00260746 -1.79445784
-0.01084439 0.99992787 0.00516316 0.10811094
-0.00255135 -0.00519112 0.99998327 0.91504149
Axis -0.42143219 0.20997001 -0.88221738
Axis point 9.40798610 166.83329063 0.00000000
Rotation angle (degrees) 0.70387533
Shift along axis -0.02832314
> select add #3.4
3479 atoms, 3530 bonds, 1 pseudobond, 468 residues, 3 models selected
> select subtract #3.3
1747 atoms, 1775 bonds, 1 pseudobond, 235 residues, 2 models selected
> fitmap #3.4 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split D
(#3.4) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1747 atoms
average map value = 0.2892, steps = 48
shifted from previous position = 0.13
rotated from previous position = 0.336 degrees
atoms outside contour = 433, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split D (#3.4)
relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
coordinates:
Matrix rotation and translation
0.99999155 -0.00409063 -0.00041466 0.62938032
0.00409233 0.99998288 0.00418225 -1.07611994
0.00039755 -0.00418391 0.99999117 0.61687471
Axis -0.71317510 -0.06923662 0.69755829
Axis point 0.00000000 137.56836617 256.94324536
Rotation angle (degrees) 0.33606649
Shift along axis 0.05595459
> select subtract #3.4
Nothing selected
> select add #3.5
1832 atoms, 1867 bonds, 238 residues, 1 model selected
> fitmap #3.5 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split E
(#3.5) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1832 atoms
average map value = 0.3119, steps = 44
shifted from previous position = 0.0926
rotated from previous position = 0.178 degrees
atoms outside contour = 404, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split E (#3.5)
relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
coordinates:
Matrix rotation and translation
0.99999615 0.00271585 -0.00057558 -0.35881395
-0.00271664 0.99999537 -0.00137462 0.53829088
0.00057185 0.00137618 0.99999889 -0.22498126
Axis 0.44393518 -0.18517716 -0.87671602
Axis point 193.72984616 122.30380727 0.00000000
Rotation angle (degrees) 0.17751425
Shift along axis -0.06172464
> fitmap #3.6 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split F
(#3.6) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1834 atoms
average map value = 0.2952, steps = 44
shifted from previous position = 0.183
rotated from previous position = 0.331 degrees
atoms outside contour = 430, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split F (#3.6)
relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
coordinates:
Matrix rotation and translation
0.99999304 -0.00356288 0.00110672 0.18132674
0.00356774 0.99998387 -0.00441914 0.13941919
-0.00109096 0.00442306 0.99998962 -0.53508668
Axis 0.76424900 0.18994995 0.61631363
Axis point 0.00000000 98.11421519 38.27107754
Rotation angle (degrees) 0.33145177
Shift along axis -0.16471977
> select subtract #3.5
Nothing selected
> select add #3.6
1834 atoms, 1869 bonds, 240 residues, 1 model selected
> fitmap #3.6 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split F
(#3.6) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1834 atoms
average map value = 0.2952, steps = 40
shifted from previous position = 0.0304
rotated from previous position = 0.0338 degrees
atoms outside contour = 426, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split F (#3.6)
relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
coordinates:
Matrix rotation and translation
0.99999177 -0.00397895 0.00079152 0.27163063
0.00398220 0.99998349 -0.00414250 0.03044151
-0.00077502 0.00414561 0.99999111 -0.52652750
Axis 0.71458065 0.13506342 0.68639083
Axis point 0.00000000 100.01522593 12.27070894
Rotation angle (degrees) 0.33227620
Shift along axis -0.16319012
> select subtract #3.6
Nothing selected
> select add #3.7
1838 atoms, 1871 bonds, 244 residues, 1 model selected
> fitmap #3.7 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split G
(#3.7) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1838 atoms
average map value = 0.2873, steps = 40
shifted from previous position = 0.119
rotated from previous position = 0.643 degrees
atoms outside contour = 482, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split G (#3.7)
relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
coordinates:
Matrix rotation and translation
0.99993907 -0.01094111 -0.00146368 1.39015266
0.01093816 0.99993816 -0.00200646 -1.15662249
0.00148554 0.00199033 0.99999692 -0.47534195
Axis 0.17814164 -0.13145059 0.97518526
Axis point 107.23024107 127.50045829 0.00000000
Rotation angle (degrees) 0.64275788
Shift along axis -0.06386368
> select add #3.8
2739 atoms, 2787 bonds, 357 residues, 2 models selected
> select subtract #3.7
901 atoms, 916 bonds, 113 residues, 1 model selected
> fitmap #3.8 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split H
(#3.8) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 901 atoms
average map value = 0.1819, steps = 40
shifted from previous position = 0.0732
rotated from previous position = 0.428 degrees
atoms outside contour = 400, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split H (#3.8)
relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
coordinates:
Matrix rotation and translation
0.99997232 -0.00623841 -0.00405467 1.42973023
0.00624096 0.99998033 0.00061780 -0.87614401
0.00405074 -0.00064309 0.99999159 -0.42192718
Axis -0.08443128 -0.54275137 0.83563886
Axis point 140.91191250 228.58696563 0.00000000
Rotation angle (degrees) 0.42782947
Shift along axis 0.00223566
> select subtract #3.8
Nothing selected
> select add #3.9
1994 atoms, 2036 bonds, 3 pseudobonds, 264 residues, 2 models selected
> fitmap #3.9 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split I
(#3.9) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1994 atoms
average map value = 0.127, steps = 44
shifted from previous position = 0.165
rotated from previous position = 0.504 degrees
atoms outside contour = 1134, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split I (#3.9)
relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
coordinates:
Matrix rotation and translation
0.99999025 -0.00190053 0.00398675 -0.52580936
0.00193081 0.99996922 -0.00760474 1.06270195
-0.00397218 0.00761236 0.99996314 -0.66569808
Axis 0.86485378 0.45234062 0.21775192
Axis point 0.00000000 84.75491758 146.47748803
Rotation angle (degrees) 0.50406588
Shift along axis -0.11900199
> select add #3.10
3877 atoms, 3959 bonds, 5 pseudobonds, 512 residues, 4 models selected
> select subtract #3.9
1883 atoms, 1923 bonds, 2 pseudobonds, 248 residues, 2 models selected
> fitmap #3.10 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split J
(#3.10) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1883 atoms
average map value = 0.144, steps = 44
shifted from previous position = 0.181
rotated from previous position = 0.341 degrees
atoms outside contour = 988, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split J
(#3.10) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998366 -0.00117162 -0.00559485 0.93178316
0.00116236 0.99999795 -0.00165798 0.03346493
0.00559678 0.00165145 0.99998297 -0.68303067
Axis 0.27806191 -0.94033236 0.19610363
Axis point 125.81370784 0.00000000 161.51974162
Rotation angle (degrees) 0.34096295
Shift along axis 0.09368046
> select subtract #3.10
Nothing selected
> select add #3.11
1659 atoms, 1686 bonds, 220 residues, 1 model selected
> fitmap #3.11 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split K
(#3.11) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1659 atoms
average map value = 0.3052, steps = 48
shifted from previous position = 0.179
rotated from previous position = 0.715 degrees
atoms outside contour = 400, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split K
(#3.11) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99994918 0.00650650 -0.00770025 -0.17210017
-0.00644976 0.99995203 0.00737077 -0.07791740
0.00774784 -0.00732073 0.99994319 0.42225168
Axis -0.58891059 -0.61923846 -0.51935349
Axis point -50.02791844 0.00000000 -27.35017379
Rotation angle (degrees) 0.71469496
Shift along axis -0.06969682
> fitmap #3.12 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split L
(#3.12) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1591 atoms
average map value = 0.3263, steps = 48
shifted from previous position = 0.328
rotated from previous position = 0.653 degrees
atoms outside contour = 317, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split L
(#3.12) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99997842 0.00604397 0.00257548 -1.89003372
-0.00601971 0.99993842 -0.00932293 2.76720563
-0.00263167 0.00930723 0.99995322 -1.25549058
Axis 0.81719916 0.22840789 -0.52916478
Axis point 0.00000000 150.51839485 301.90168710
Rotation angle (degrees) 0.65311674
Shift along axis -0.24812096
> fitmap #3.13 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split M
(#3.13) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1561 atoms
average map value = 0.3273, steps = 48
shifted from previous position = 0.172
rotated from previous position = 0.846 degrees
atoms outside contour = 321, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split M
(#3.13) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998024 -0.00605149 0.00170467 0.57642528
0.00602817 0.99989250 0.01336633 -3.67034980
-0.00178538 -0.01335579 0.99990921 2.72351120
Axis -0.90483678 0.11817644 0.40902901
Axis point 0.00000000 197.17349122 277.58547360
Rotation angle (degrees) 0.84607532
Shift along axis 0.15867542
> fitmap #3.13 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split M
(#3.13) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1561 atoms
average map value = 0.3273, steps = 40
shifted from previous position = 0.00793
rotated from previous position = 0.00911 degrees
atoms outside contour = 321, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split M
(#3.13) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998120 -0.00590852 0.00164176 0.55953111
0.00588600 0.99989295 0.01339567 -3.64876373
-0.00172073 -0.01338575 0.99990893 2.71299548
Axis -0.90919795 0.11415268 0.40041011
Axis point 0.00000000 195.98646947 275.32261443
Rotation angle (degrees) 0.84388555
Shift along axis 0.16107014
> fitmap #3.14 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split N
(#3.14) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1543 atoms
average map value = 0.3374, steps = 48
shifted from previous position = 0.182
rotated from previous position = 0.437 degrees
atoms outside contour = 301, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split N
(#3.14) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998173 -0.00595203 -0.00105854 1.26087681
0.00595688 0.99997150 0.00463747 -1.98605307
0.00103090 -0.00464369 0.99998869 0.63150299
Axis -0.60890776 -0.13708156 0.78130659
Axis point 334.46098882 210.59719947 0.00000000
Rotation angle (degrees) 0.43666389
Shift along axis -0.00210896
> fitmap #3.14 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split N
(#3.14) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1543 atoms
average map value = 0.3376, steps = 36
shifted from previous position = 0.0309
rotated from previous position = 0.0334 degrees
atoms outside contour = 301, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split N
(#3.14) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998458 -0.00551152 -0.00067757 1.13868134
0.00551461 0.99997402 0.00464154 -1.91870976
0.00065197 -0.00464521 0.99998900 0.68638126
Axis -0.64147798 -0.09183677 0.76162458
Axis point 349.40769406 201.96051067 0.00000000
Rotation angle (degrees) 0.41474241
Shift along axis -0.03146606
> fitmap #3.15 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split O
(#3.15) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1650 atoms
average map value = 0.3232, steps = 44
shifted from previous position = 0.202
rotated from previous position = 0.445 degrees
atoms outside contour = 363, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split O
(#3.15) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99997298 -0.00634150 0.00371834 0.36313262
0.00635088 0.99997667 -0.00251589 -0.96453011
-0.00370230 0.00253944 0.99998992 0.34956678
Axis 0.32515827 0.47729464 0.81637120
Axis point 147.81504542 59.55128108 -0.00000000
Rotation angle (degrees) 0.44540209
Shift along axis -0.05691322
> fitmap #3.16 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split P
(#3.16) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1686 atoms
average map value = 0.3142, steps = 40
shifted from previous position = 0.257
rotated from previous position = 0.221 degrees
atoms outside contour = 402, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split P
(#3.16) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999791 0.00183184 -0.00090710 0.08553980
-0.00183480 0.99999297 -0.00327059 0.85990652
0.00090110 0.00327225 0.99999424 -0.54844214
Axis 0.84805774 -0.23437153 -0.47525578
Axis point 0.00000000 148.96131989 272.03471598
Rotation angle (degrees) 0.22102178
Shift along axis 0.13165537
> fitmap #3.17 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split Q
(#3.17) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1514 atoms
average map value = 0.308, steps = 48
shifted from previous position = 0.321
rotated from previous position = 0.59 degrees
atoms outside contour = 359, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split Q
(#3.17) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998361 -0.00387529 0.00421437 0.05990991
0.00391121 0.99995582 -0.00854747 0.56418186
-0.00418106 0.00856381 0.99995459 -0.48092873
Axis 0.83108672 0.40776175 0.37818676
Axis point 0.00000000 60.80788484 61.01813306
Rotation angle (degrees) 0.58984305
Shift along axis 0.09796123
> fitmap #3.18 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split R
(#3.18) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1727 atoms
average map value = 0.3156, steps = 40
shifted from previous position = 0.195
rotated from previous position = 0.38 degrees
atoms outside contour = 369, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split R
(#3.18) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999534 0.00294688 0.00080312 -0.77167156
-0.00295155 0.99997837 0.00587715 -0.24314207
-0.00078578 -0.00587949 0.99998241 1.35802759
Axis -0.88736410 0.11992617 -0.44519958
Axis point 0.00000000 234.70952234 43.27515594
Rotation angle (degrees) 0.37955697
Shift along axis 0.05100122
> fitmap #3.19 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split S
(#3.19) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1762 atoms
average map value = 0.3058, steps = 40
shifted from previous position = 0.159
rotated from previous position = 0.0602 degrees
atoms outside contour = 373, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split S
(#3.19) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999961 0.00067251 0.00057892 -0.25282186
-0.00067218 0.99999962 -0.00056304 0.37343398
-0.00057930 0.00056265 0.99999967 -0.08946434
Axis 0.53562726 0.55110572 -0.63983273
Axis point 450.64644939 477.85366089 0.00000000
Rotation angle (degrees) 0.06020694
Shift along axis 0.12762553
> fitmap #3.20 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split T
(#3.20) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1732 atoms
average map value = 0.2868, steps = 48
shifted from previous position = 0.0801
rotated from previous position = 0.693 degrees
atoms outside contour = 439, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split T
(#3.20) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99993548 0.01060625 -0.00406670 -1.29189145
-0.01062299 0.99993510 -0.00411568 3.06072041
0.00402279 0.00415862 0.99998326 -1.60324900
Axis 0.34222166 -0.33457806 -0.87803295
Axis point 285.53805305 121.65542767 0.00000000
Rotation angle (degrees) 0.69267070
Shift along axis -0.05845769
> fitmap #3.21 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split U
(#3.21) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1747 atoms
average map value = 0.2874, steps = 48
shifted from previous position = 0.148
rotated from previous position = 0.391 degrees
atoms outside contour = 431, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split U
(#3.21) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998621 -0.00451830 -0.00267572 1.32128833
0.00450661 0.99998035 -0.00435717 -0.26962975
0.00269536 0.00434505 0.99998693 -1.25929759
Axis 0.63803288 -0.39379921 0.66169194
Axis point 50.90167341 275.90346830 0.00000000
Rotation angle (degrees) 0.39073568
Shift along axis 0.11593833
> fitmap #3.22 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split V
(#3.22) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1832 atoms
average map value = 0.3088, steps = 40
shifted from previous position = 0.0712
rotated from previous position = 0.287 degrees
atoms outside contour = 402, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split V
(#3.22) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999084 0.00391157 0.00174008 -0.88560719
-0.00391608 0.99998896 0.00259665 0.43034209
-0.00172991 -0.00260344 0.99999511 0.84980951
Axis -0.51909131 0.34638662 -0.78138372
Axis point 114.11860349 234.00694257 0.00000000
Rotation angle (degrees) 0.28698626
Shift along axis -0.05525158
> fitmap #3.23 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split W
(#3.23) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1834 atoms
average map value = 0.2906, steps = 40
shifted from previous position = 0.128
rotated from previous position = 0.255 degrees
atoms outside contour = 451, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split W
(#3.23) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999917 -0.00127948 0.00013013 0.30535055
0.00127891 0.99999008 0.00426580 -0.75929935
-0.00013559 -0.00426563 0.99999089 0.80565163
Axis -0.95743226 0.02982097 0.28711352
Axis point 0.00000000 194.12342737 177.86334795
Rotation angle (degrees) 0.25527454
Shift along axis -0.08368203
> fitmap #3.24 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split X
(#3.24) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1838 atoms
average map value = 0.284, steps = 48
shifted from previous position = 0.128
rotated from previous position = 0.688 degrees
atoms outside contour = 495, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split X
(#3.24) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99993384 -0.01112821 0.00291240 1.92171681
0.01111805 0.99993212 0.00348405 -2.53052238
-0.00295097 -0.00345144 0.99998969 1.19772259
Axis -0.28863440 0.24401555 0.92582212
Axis point 227.25208412 169.69625843 0.00000000
Rotation angle (degrees) 0.68838674
Shift along axis -0.06328231
> fitmap #3.25 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split Y
(#3.25) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 901 atoms
average map value = 0.1798, steps = 44
shifted from previous position = 0.136
rotated from previous position = 0.314 degrees
atoms outside contour = 401, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split Y
(#3.25) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998580 -0.00428211 0.00317277 0.29744538
0.00428624 0.99998997 -0.00129572 -0.69695270
-0.00316719 0.00130930 0.99999413 0.38577609
Axis 0.23741199 0.57779906 0.78088655
Axis point 158.61100397 70.64580159 0.00000000
Rotation angle (degrees) 0.31434332
Shift along axis -0.03083415
> fitmap #3.26 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split Z
(#3.26) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1994 atoms
average map value = 0.1295, steps = 48
shifted from previous position = 0.147
rotated from previous position = 0.468 degrees
atoms outside contour = 1126, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split Z
(#3.26) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999327 -0.00211651 -0.00299800 0.96996747
0.00213833 0.99997110 0.00729499 -1.67106386
0.00298247 -0.00730135 0.99996890 0.68725120
Axis -0.89341047 -0.36605197 0.26042981
Axis point 0.00000000 95.84031181 233.25849435
Rotation angle (degrees) 0.46804776
Shift along axis -0.07590218
> fitmap #3.27 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split a
(#3.27) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1883 atoms
average map value = 0.1535, steps = 48
shifted from previous position = 0.0671
rotated from previous position = 0.249 degrees
atoms outside contour = 940, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split a
(#3.27) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999109 -0.00051452 0.00418990 -0.54205287
0.00051033 0.99999937 0.00099994 -0.22463103
-0.00419041 -0.00099780 0.99999072 1.18124408
Axis -0.23026384 0.96593210 0.11812593
Axis point 280.27471293 0.00000000 127.36388738
Rotation angle (degrees) 0.24854647
Shift along axis 0.04737241
> fitmap #3.28 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split b
(#3.28) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1659 atoms
average map value = 0.3136, steps = 60
shifted from previous position = 0.229
rotated from previous position = 0.701 degrees
atoms outside contour = 378, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split b
(#3.28) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99994731 0.00642010 0.00800935 -1.81609946
-0.00636665 0.99995742 -0.00668052 2.13777762
-0.00805190 0.00662917 0.99994561 0.69461762
Axis 0.54399526 0.65645708 -0.52262152
Axis point 88.10825820 0.00000000 230.88525685
Rotation angle (degrees) 0.70093259
Shift along axis 0.05238765
> fitmap #3.29 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split c
(#3.29) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1591 atoms
average map value = 0.3329, steps = 48
shifted from previous position = 0.389
rotated from previous position = 0.668 degrees
atoms outside contour = 319, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split c
(#3.29) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998111 0.00563816 -0.00244575 0.11737615
-0.00561363 0.99993500 0.00992429 -0.91316338
0.00250154 -0.00991037 0.99994776 0.95912655
Axis -0.85001952 -0.21201728 -0.48219861
Axis point -0.00000000 78.31359490 100.40169372
Rotation angle (degrees) 0.66849528
Shift along axis -0.36865508
> fitmap #3.30 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split d
(#3.30) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1561 atoms
average map value = 0.3275, steps = 44
shifted from previous position = 0.251
rotated from previous position = 0.921 degrees
atoms outside contour = 322, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split d
(#3.30) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99997995 -0.00549054 -0.00315645 1.65410232
0.00544331 0.99987591 -0.01478317 2.27541943
0.00323722 0.01476569 0.99988574 -2.47831874
Axis 0.91912002 -0.19887563 0.34009832
Axis point 0.00000000 174.22678705 155.48289538
Rotation angle (degrees) 0.92104303
Shift along axis 0.22492104
> fitmap #3.31 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split e
(#3.31) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1543 atoms
average map value = 0.3323, steps = 36
shifted from previous position = 0.124
rotated from previous position = 0.435 degrees
atoms outside contour = 309, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split e
(#3.31) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998308 -0.00580277 -0.00040991 0.98890388
0.00580070 0.99997126 -0.00488086 0.29004400
0.00043822 0.00487840 0.99998800 -0.75326971
Axis 0.64266519 -0.05585037 0.76410876
Axis point -49.60190473 165.71804976 0.00000000
Rotation angle (degrees) 0.43504016
Shift along axis 0.04375505
> fitmap #3.31 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split e
(#3.31) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1543 atoms
average map value = 0.3324, steps = 36
shifted from previous position = 0.013
rotated from previous position = 0.0456 degrees
atoms outside contour = 309, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split e
(#3.31) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998403 -0.00564795 -0.00019218 0.90966799
0.00564711 0.99997552 -0.00413203 0.16334862
0.00021551 0.00413087 0.99999144 -0.60928634
Axis 0.59017668 -0.02911898 0.80674877
Axis point -28.45500616 156.90293075 0.00000000
Rotation angle (degrees) 0.40109442
Shift along axis 0.04056728
> fitmap #3.32 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split f
(#3.32) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1650 atoms
average map value = 0.3184, steps = 44
shifted from previous position = 0.251
rotated from previous position = 0.42 degrees
atoms outside contour = 370, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split f
(#3.32) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99997698 -0.00600947 -0.00315100 1.60984287
0.00601816 0.99997809 0.00275610 -0.95270175
0.00313437 -0.00277500 0.99999124 0.11268531
Axis -0.37742650 -0.42889518 0.82073026
Axis point 166.84326278 260.55637524 0.00000000
Rotation angle (degrees) 0.41983229
Shift along axis -0.10650394
> fitmap #3.32 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split f
(#3.32) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1650 atoms
average map value = 0.3184, steps = 40
shifted from previous position = 0.0295
rotated from previous position = 0.0352 degrees
atoms outside contour = 369, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split f
(#3.32) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998053 -0.00542468 -0.00308361 1.50252873
0.00543374 0.99998093 0.00293496 -0.88545476
0.00306763 -0.00295166 0.99999094 0.15328228
Axis -0.42661632 -0.44579418 0.78693460
Axis point 174.19873995 266.47322071 0.00000000
Rotation angle (degrees) 0.39529759
Shift along axis -0.12564956
> fitmap #3.33 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split g
(#3.33) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1686 atoms
average map value = 0.3197, steps = 40
shifted from previous position = 0.172
rotated from previous position = 0.296 degrees
atoms outside contour = 396, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split g
(#3.33) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999636 0.00230758 0.00140119 -0.70952798
-0.00231373 0.99998763 0.00440309 -0.26801055
-0.00139101 -0.00440631 0.99998932 1.02659594
Axis -0.85259986 0.27023800 -0.44726379
Axis point 0.00000000 240.26915395 66.04611291
Rotation angle (degrees) 0.29600268
Shift along axis 0.07335763
> fitmap #3.33 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split g
(#3.33) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1686 atoms
average map value = 0.3196, steps = 44
shifted from previous position = 0.0223
rotated from previous position = 0.0239 degrees
atoms outside contour = 394, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split g
(#3.33) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99999612 0.00214130 0.00178424 -0.74733051
-0.00214914 0.99998800 0.00440154 -0.30843292
-0.00177480 -0.00440536 0.99998872 1.07695445
Axis -0.84495949 0.34146507 -0.41163706
Axis point 0.00000000 252.00683371 77.18658784
Rotation angle (degrees) 0.29859435
Shift along axis 0.08283057
> fitmap #3.34 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split h
(#3.34) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1514 atoms
average map value = 0.312, steps = 48
shifted from previous position = 0.329
rotated from previous position = 0.648 degrees
atoms outside contour = 352, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split h
(#3.34) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99997658 -0.00482214 -0.00485588 1.46361826
0.00486569 0.99994768 0.00899841 -1.92013472
0.00481223 -0.00902183 0.99994772 0.87708748
Axis -0.79634658 -0.42725094 0.42812236
Axis point 0.00000000 94.54765875 212.49551592
Rotation angle (degrees) 0.64827663
Shift along axis 0.03033274
> fitmap #3.34 inMap #1
Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split h
(#3.34) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
using 1514 atoms
average map value = 0.3119, steps = 48
shifted from previous position = 0.0447
rotated from previous position = 0.0408 degrees
atoms outside contour = 355, contour level = 0.12772
Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split h
(#3.34) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
(#1) coordinates:
Matrix rotation and translation
0.99998022 -0.00431631 -0.00457590 1.39114212
0.00435926 0.99994615 0.00941783 -1.92120098
0.00453500 -0.00943759 0.99994518 0.96484662
Axis -0.83183811 -0.40194224 0.38273724
Axis point 0.00000000 101.67937116 205.24807821
Rotation angle (degrees) 0.64938057
Shift along axis -0.01571047
> select subtract #3.11
Nothing selected
> hide #!3 models
> show #!3 models
> select add #3
56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 43 models selected
> combine sel
> rename #4 Structure_20SCP_preholo_mature_beta-subunits_docked
> select add #4
113816 atoms, 115920 bonds, 28 pseudobonds, 14956 residues, 45 models selected
> select subtract #3
56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 2 models selected
> select subtract #4
Nothing selected
> hide #!3 models
> hide #!4 models
> show #!4 models
> show #!3 models
> hide #!3 models
> hide #!4 models
> show #!4 models
> color zone #1 near #4 distance 11.3
> close #3
> split #2
Split Structure_20SCP_preholo_2xMap5_docked (#2) into 34 models
Chain information for Structure_20SCP_preholo_2xMap5_docked A #2.1
---
Chain | Description
A | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked B #2.2
---
Chain | Description
B | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked C #2.3
---
Chain | Description
C | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked D #2.4
---
Chain | Description
D | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked E #2.5
---
Chain | Description
E | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked F #2.6
---
Chain | Description
F | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked G #2.7
---
Chain | Description
G | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked H #2.8
---
Chain | Description
H | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked I #2.9
---
Chain | Description
I | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked J #2.10
---
Chain | Description
J | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked K #2.11
---
Chain | Description
K | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked L #2.12
---
Chain | Description
L | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked M #2.13
---
Chain | Description
M | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked N #2.14
---
Chain | Description
N | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked O #2.15
---
Chain | Description
O | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked P #2.16
---
Chain | Description
P | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked Q #2.17
---
Chain | Description
Q | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked R #2.18
---
Chain | Description
R | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked S #2.19
---
Chain | Description
S | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked T #2.20
---
Chain | Description
T | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked U #2.21
---
Chain | Description
U | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked V #2.22
---
Chain | Description
V | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked W #2.23
---
Chain | Description
W | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked X #2.24
---
Chain | Description
X | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked Y #2.25
---
Chain | Description
Y | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked Z #2.26
---
Chain | Description
Z | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked a #2.27
---
Chain | Description
a | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked b #2.28
---
Chain | Description
b | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked c #2.29
---
Chain | Description
c | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked d #2.30
---
Chain | Description
d | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked e #2.31
---
Chain | Description
e | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked f #2.32
---
Chain | Description
f | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked g #2.33
---
Chain | Description
g | No description available
Chain information for Structure_20SCP_preholo_2xMap5_docked h #2.34
---
Chain | Description
h | No description available
> select add #2.1
1727 atoms, 1766 bonds, 229 residues, 1 model selected
> transparency 50
> show #2.1 models
> hide #!2 models
> show #!2 models
> show #!2.2 models
> show #2.3 models
> show #!2.4 models
> show #2.5 models
> show #2.6 models
> show #2.7 models
> show #2.8 models
> show #!2.9 models
> show #!2.10 models
> show #!2.11 models
> show #!2.12 models
> show #2.13 models
> hide #2.13 models
> show #!2.14 models
> show #2.13 models
> show #!2.15 models
> show #!2.16 models
> show #!2.17 models
> show #2.18 models
> show #!2.19 models
> show #2.20 models
> show #!2.21 models
> show #2.22 models
> show #2.23 models
> show #2.24 models
> show #2.25 models
> show #!2.26 models
> show #!2.27 models
> show #!2.28 models
> show #!2.29 models
> show #2.30 models
> show #!2.31 models
> show #!2.32 models
> show #!2.33 models
> show #!2.34 models
> fitmap #2.1 inMap #1
Fit molecule Structure_20SCP_preholo_2xMap5_docked A (#2.1) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1727
atoms
average map value = 0.3128, steps = 44
shifted from previous position = 0.22
rotated from previous position = 0.438 degrees
atoms outside contour = 378, contour level = 0.12772
Position of Structure_20SCP_preholo_2xMap5_docked A (#2.1) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999366 0.00330766 -0.00132116 -0.14380031
-0.00331653 0.99997159 -0.00676931 1.36502836
0.00129874 0.00677365 0.99997622 -0.92005519
Axis 0.88503674 -0.17121145 -0.43289331
Axis point 0.00000000 134.15368166 202.03015126
Rotation angle (degrees) 0.43837830
Shift along axis 0.03730868
> select subtract #2.1
Nothing selected
> select add #2.1
1727 atoms, 1766 bonds, 229 residues, 1 model selected
> select add #2
54390 atoms, 55374 bonds, 40 pseudobonds, 7274 residues, 55 models selected
> select subtract #2
Nothing selected
> select add #2.1
1727 atoms, 1766 bonds, 229 residues, 1 model selected
> select subtract #2.1
Nothing selected
> select add #2.2
1762 atoms, 1789 bonds, 1 pseudobond, 242 residues, 2 models selected
> fitmap #2.2 inMap #1
Fit molecule Structure_20SCP_preholo_2xMap5_docked B (#2.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1762
atoms
average map value = 0.3063, steps = 48
shifted from previous position = 0.208
rotated from previous position = 0.132 degrees
atoms outside contour = 380, contour level = 0.12772
Position of Structure_20SCP_preholo_2xMap5_docked B (#2.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999736 0.00168742 -0.00156034 0.06358106
-0.00168724 0.99999857 0.00011938 0.02704562
0.00156054 -0.00011675 0.99999878 -0.28530675
Axis -0.05130437 -0.67806866 -0.73320581
Axis point 91.45420342 -43.23971739 0.00000000
Rotation angle (degrees) 0.13185507
Shift along axis 0.18758779
> select subtract #2.2
Nothing selected
> select add #2.3
1732 atoms, 1755 bonds, 233 residues, 1 model selected
> select add #2
54390 atoms, 55374 bonds, 40 pseudobonds, 7274 residues, 55 models selected
> select subtract #2
Nothing selected
> hide #!4 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #1 level 0.1277
> volume #1 level 0.1723
> hide #!2 models
> close #2
> rename #4 id #2
> show #!2 models
> color zone #1 near #2 distance 11.3
> save
> /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_mature_beta-
> subunits_docked.pdb
> save
> /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_model_building.cxs
> includeMaps true
——— End of log from Tue Sep 19 12:38:57 2023 ———
opened ChimeraX session
> hide #!2 models
> open "/Users/fadlof/Downloads/20SCP_preholo/Coot
> /Structure_20SCP_preholo_mature_beta-
> subunits_docked_real_space_refined_001-coot-2.pdb"
Summary of feedback from opening /Users/fadlof/Downloads/20SCP_preholo/Coot
/Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-2.pdb
---
warning | End residue of secondary structure not found: HELIX 99 99 ASP P 255
HIS P 258 1 4
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-2.pdb #3
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J a | No description available
K | No description available
L c | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
b | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
> style #!3 stick
Changed 57246 atom styles
> show #!3 cartoons
> hide #!3 cartoons
> show #!3 cartoons
> hide #!3 atoms
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> color zone #1 near #3 distance 11.3
> volume #1 level 0.1557
> volume #1 level 0.1391
> volume #1 level 0.04631
> view
[Repeated 1 time(s)]
> ui tool show "Side View"
> close #3
> open "/Users/fadlof/Downloads/20SCP_preholo/Coot
> /Structure_20SCP_preholo_mature_beta-
> subunits_docked_real_space_refined_001-coot-1.pdb"
Summary of feedback from opening /Users/fadlof/Downloads/20SCP_preholo/Coot
/Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb
---
warning | End residue of secondary structure not found: HELIX 99 99 ASP P 255
HIS P 258 1 4
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb #3
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J a | No description available
K | No description available
L c | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
R | No description available
S | No description available
T | No description available
U | No description available
V | No description available
W | No description available
X | No description available
Y | No description available
Z | No description available
b | No description available
d | No description available
e | No description available
f | No description available
g | No description available
h | No description available
> style #!3 stick
Changed 57246 atom styles
> hide #!3 cartoons
[Repeated 1 time(s)]
> show #!3 cartoons
> hide #!3 atoms
[Repeated 1 time(s)]
> hide #!1 models
> show #!1 models
> color zone #1 near #3 distance 11.3
> volume #1 level 0.05
> volume #1 level 0.08
> volume #1 level 0.1
> transparency 50
> slpit #3
Unknown command: slpit #3
> split #3
Split Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb (#3) into 34 models
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb A #3.1
---
Chain | Description
A | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb B #3.2
---
Chain | Description
B | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb C #3.3
---
Chain | Description
C | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb D #3.4
---
Chain | Description
D | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb E #3.5
---
Chain | Description
E | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb F #3.6
---
Chain | Description
F | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb G #3.7
---
Chain | Description
G | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb H #3.8
---
Chain | Description
H | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb I #3.9
---
Chain | Description
I | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb J #3.10
---
Chain | Description
J | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb K #3.11
---
Chain | Description
K | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb L #3.12
---
Chain | Description
L | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb M #3.13
---
Chain | Description
M | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb N #3.14
---
Chain | Description
N | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb O #3.15
---
Chain | Description
O | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb P #3.16
---
Chain | Description
P | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb Q #3.17
---
Chain | Description
Q | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb R #3.18
---
Chain | Description
R | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb S #3.19
---
Chain | Description
S | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb T #3.20
---
Chain | Description
T | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb U #3.21
---
Chain | Description
U | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb V #3.22
---
Chain | Description
V | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb W #3.23
---
Chain | Description
W | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb X #3.24
---
Chain | Description
X | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb Y #3.25
---
Chain | Description
Y | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb Z #3.26
---
Chain | Description
Z | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb a #3.27
---
Chain | Description
a | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb b #3.28
---
Chain | Description
b | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb c #3.29
---
Chain | Description
c | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb d #3.30
---
Chain | Description
d | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb e #3.31
---
Chain | Description
e | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb f #3.32
---
Chain | Description
f | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb g #3.33
---
Chain | Description
g | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb h #3.34
---
Chain | Description
h | No description available
> color #3.1 #a3d1f6ff
> color #3.2 #90c8f5ff
> color #3.3 #59acefff
> color #3.4 #2590eaff
> color #3.5 #176fbbff
> color #3.6 #326cb1ff
> color #3.7 #c7e4faff
> select add #3.8
889 atoms, 904 bonds, 111 residues, 1 model selected
> color #3.8 #fe9000ff
> select add #3.9
2929 atoms, 2987 bonds, 3 pseudobonds, 379 residues, 3 models selected
> select subtract #3.9
889 atoms, 904 bonds, 111 residues, 1 model selected
> select add #3.9
2929 atoms, 2987 bonds, 3 pseudobonds, 379 residues, 3 models selected
> color #3.8 #fff7d6ff
> color #3.8 #fe9000ff
> color #3.9 #fff7d6ff
> color #3.10 #ffec99ff
> color #3.10 #f4d5ffff
> color #3.11 #efc1ffff
> color #3.12 #e497ffff
> color #3.13 #d356ffff
> color #3.14 #c300ffff
> color #3.15 #a500e0ff
> color #3.16 #9600ccff
> select add #3.17
4384 atoms, 4467 bonds, 3 pseudobonds, 574 residues, 4 models selected
> color #3.17 silver
> color #3.18 silver
> color #3.19 silver
> color #3.20 silver
> color #3.21 silver
> color #3.22 silver
> color #3.23 silver
> color #3.24 #fe9000ff
> color #3.25 silver
> color #3.26 silver
> color #3.27 #ff7e79ff
> color #3.28 darkgrey
> color #3.29 silver
> color #3.28 silver
> color #3.30 silver
> color #3.31 silver
> color #3.32 darkgrey
> color #3.32 silver
> color #3.33 silver
> color #3.34 #d6d6d6ff
> color #3.34 silver
> select add #3
57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 44 models selected
> select subtract #3
Nothing selected
> combine #3
Color zone shortcut requires 1 displayed atomic model and 1 map, got 35 atomic
models, 1 maps.
> hide #!3 models
> color zone #1 near #4 distance 11.3
> color #3.24 silver
> color #3.24 darkgrey
> color #3.27 silver
> combine #3
> close #4
> rename #5 id #4
> color zone #1 near #4 distance 11.3
> select add #3.1
1720 atoms, 1759 bonds, 229 residues, 1 model selected
> select subtract #3.1
Nothing selected
> select add #3.1
1720 atoms, 1759 bonds, 229 residues, 1 model selected
> select add #3.2
3522 atoms, 3589 bonds, 477 residues, 2 models selected
> select add #3.3
5290 atoms, 5380 bonds, 714 residues, 3 models selected
> select add #3.4
7063 atoms, 7181 bonds, 1 pseudobond, 952 residues, 5 models selected
> select add #3.5
8972 atoms, 9127 bonds, 1 pseudobond, 1199 residues, 6 models selected
> select add #3.6
10819 atoms, 11009 bonds, 1 pseudobond, 1440 residues, 7 models selected
> select add #3.7
12684 atoms, 12907 bonds, 1 pseudobond, 1686 residues, 8 models selected
> hide #!1 models
> select add #3
57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 44 models selected
> select subtract #3
Nothing selected
> select add #3.8
889 atoms, 904 bonds, 111 residues, 1 model selected
> color #3.8 #8efa00ff
> hide #!4 models
> show #!3 models
> close #4
> color #3.10 #ffec99ff
> color #3.11 #f4d5ffff
> color #3.12 #efc1ffff
> color #3.13 #e497ffff
> color #3.14 #d356ffff
> color #3.15 #c300ffff
> color #3.16 #a500e0ff
> color #3.17 #9600ccff
> select add #3.18
2616 atoms, 2670 bonds, 340 residues, 2 models selected
> select subtract #3.18
889 atoms, 904 bonds, 111 residues, 1 model selected
> select add #3.18
2616 atoms, 2670 bonds, 340 residues, 2 models selected
> select subtract #3.18
889 atoms, 904 bonds, 111 residues, 1 model selected
> color #3.25 #fe9000ff
> select add #3.28
2548 atoms, 2590 bonds, 331 residues, 2 models selected
> color #3.25 #f4d5ffff
> color #3.25 #fe9000ff
> color #3.28 #f4d5ffff
> color #3.29 #efc1ffff
> color #3.30 #e497ffff
> color #3.31 #d356ffff
> color #3.32 #c300ffff
> color #3.33 #a500e0ff
> color #3.34 #9600ccff
> select subtract #3.28
889 atoms, 904 bonds, 111 residues, 1 model selected
Color zone shortcut requires 1 displayed atomic model and 1 map, got 34 atomic
models, 0 maps.
> combine #3
> select add #3
57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 44 models selected
> select subtract #3
Nothing selected
> hide #!3 models
> show #!1 models
> color zone #1 near #4 distance 11.3
> transparency 50
> color zone #1 near #4 distance 11.3
> hide #3.8 models
> show #3.8 models
> hide #!4 models
> hide #3.8 models
> show #3.8 models
> volume #1 level 0.12
> transparency 50
> transparency 0
> hide #!3.11 models
> hide #3.12 models
> hide #3.13 models
> hide #3.14 models
> hide #3.15 models
> hide #3.16 models
> hide #3.17 models
> show #3.17 models
> show #3.16 models
> show #3.15 models
> show #3.14 models
> show #3.13 models
> show #3.12 models
> show #!3.11 models
> select add #3.11
1875 atoms, 1906 bonds, 1 pseudobond, 251 residues, 2 models selected
> select add #3.12
3466 atoms, 3526 bonds, 1 pseudobond, 455 residues, 3 models selected
> select add #3.13
5034 atoms, 5127 bonds, 1 pseudobond, 652 residues, 4 models selected
> select add #3.14
6583 atoms, 6707 bonds, 1 pseudobond, 852 residues, 5 models selected
> select add #3.15
8226 atoms, 8380 bonds, 1 pseudobond, 1064 residues, 6 models selected
> select add #3.16
9849 atoms, 10034 bonds, 1 pseudobond, 1272 residues, 7 models selected
> select add #3.17
11304 atoms, 11514 bonds, 1 pseudobond, 1467 residues, 8 models selected
> select add #3.18
13031 atoms, 13280 bonds, 1 pseudobond, 1696 residues, 9 models selected
> select add #3.19
14793 atoms, 15069 bonds, 2 pseudobonds, 1938 residues, 11 models selected
> select add #3.20
16525 atoms, 16824 bonds, 2 pseudobonds, 2171 residues, 12 models selected
> select add #3.21
18272 atoms, 18599 bonds, 3 pseudobonds, 2406 residues, 14 models selected
> select add #3.22
20104 atoms, 20466 bonds, 3 pseudobonds, 2644 residues, 15 models selected
> select add #3.23
21938 atoms, 22335 bonds, 3 pseudobonds, 2884 residues, 16 models selected
> select add #3.24
23776 atoms, 24206 bonds, 3 pseudobonds, 3128 residues, 17 models selected
> select add #3.25
24677 atoms, 25122 bonds, 3 pseudobonds, 3241 residues, 18 models selected
> select add #3.26
26671 atoms, 27158 bonds, 6 pseudobonds, 3505 residues, 20 models selected
> select add #3.27
28554 atoms, 29081 bonds, 8 pseudobonds, 3753 residues, 22 models selected
> close #2
> close #4
> rename #3 id #2
> combine #2
> select add #2
57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 44 models selected
> select subtract #2
Nothing selected
> select add #3
57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 2 models selected
> select subtract #3
Nothing selected
> select add #3
57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 2 models selected
> select subtract #3
Nothing selected
> select add #3
57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 2 models selected
> select subtract #3
Nothing selected
> select add #2.1
1720 atoms, 1759 bonds, 229 residues, 1 model selected
> select subtract #2.1
Nothing selected
> select add #2.11
1875 atoms, 1906 bonds, 1 pseudobond, 251 residues, 2 models selected
> select add #2.12
3466 atoms, 3526 bonds, 1 pseudobond, 455 residues, 3 models selected
> select add #2.13
5034 atoms, 5127 bonds, 1 pseudobond, 652 residues, 4 models selected
> select add #2.14
6583 atoms, 6707 bonds, 1 pseudobond, 852 residues, 5 models selected
> select add #2.15
8226 atoms, 8380 bonds, 1 pseudobond, 1064 residues, 6 models selected
> select add #2.16
9849 atoms, 10034 bonds, 1 pseudobond, 1272 residues, 7 models selected
> select add #2.17
11304 atoms, 11514 bonds, 1 pseudobond, 1467 residues, 8 models selected
> select add #2.25
12205 atoms, 12430 bonds, 1 pseudobond, 1580 residues, 9 models selected
> select add #2.26
14199 atoms, 14466 bonds, 4 pseudobonds, 1844 residues, 11 models selected
> select add #2.27
16082 atoms, 16389 bonds, 6 pseudobonds, 2092 residues, 13 models selected
> select add #2.18
17809 atoms, 18155 bonds, 6 pseudobonds, 2321 residues, 14 models selected
> select add #2.19
19571 atoms, 19944 bonds, 7 pseudobonds, 2563 residues, 16 models selected
> select add #2.20
21303 atoms, 21699 bonds, 7 pseudobonds, 2796 residues, 17 models selected
> select add #2.21
23050 atoms, 23474 bonds, 8 pseudobonds, 3031 residues, 19 models selected
> select add #2.22
24882 atoms, 25341 bonds, 8 pseudobonds, 3269 residues, 20 models selected
> select add #2.23
26716 atoms, 27210 bonds, 8 pseudobonds, 3509 residues, 21 models selected
> select add #2.24
28554 atoms, 29081 bonds, 8 pseudobonds, 3753 residues, 22 models selected
> hide #!3 models
> combine sel
> select add #4
57108 atoms, 58162 bonds, 16 pseudobonds, 7506 residues, 24 models selected
> select subtract #4
28554 atoms, 29081 bonds, 8 pseudobonds, 3753 residues, 22 models selected
> hide #!2 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!2 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!1 models
> hide #!2 models
> select add #4
57108 atoms, 58162 bonds, 16 pseudobonds, 7506 residues, 24 models selected
> show #!1 models
> ui mousemode right select
Drag select of 1 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc ,
58 residues
Drag select of 1 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc ,
27 residues
> ui mousemode right "translate selected models"
> view matrix models
> #1,1,0,0,-10.612,0,1,0,-6.1576,0,0,1,6.0525,#4,1,0,0,-10.612,0,1,0,-6.1576,0,0,1,6.0525
> show #!2 models
> hide #!2 models
> undo
[Repeated 2 time(s)]
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> ui mousemode right "rotate selected models"
> view matrix models
> #2.11,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.12,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.13,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.14,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.15,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.16,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.17,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.18,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.19,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.20,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.21,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.22,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.23,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.24,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.25,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.26,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.27,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#4,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224
> ui mousemode right select
> ui mousemode right "translate selected models"
> view matrix models
> #2.11,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.12,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.13,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.14,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.15,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.16,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.17,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.18,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.19,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.20,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.21,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.22,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.23,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.24,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.25,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.26,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.27,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#4,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43
> ui mousemode right "rotate selected models"
> view matrix models
> #2.11,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.12,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.13,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.14,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.15,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.16,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.17,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.18,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.19,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.20,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.21,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.22,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.23,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.24,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.25,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.26,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.27,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#4,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081
> view matrix models
> #2.11,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.12,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.13,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.14,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.15,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.16,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.17,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.18,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.19,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.20,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.21,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.22,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.23,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.24,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.25,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.26,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.27,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#4,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43
> view matrix models
> #2.11,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.12,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.13,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.14,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.15,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.16,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.17,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.18,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.19,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.20,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.21,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.22,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.23,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.24,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.25,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.26,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.27,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#4,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53
> view matrix models
> #2.11,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.12,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.13,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.14,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.15,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.16,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.17,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.18,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.19,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.20,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.21,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.22,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.23,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.24,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.25,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.26,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.27,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#4,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926
> ui mousemode right "translate selected models"
> view matrix models
> #2.11,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.12,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.13,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.14,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.15,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.16,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.17,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.18,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.19,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.20,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.21,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.22,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.23,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.24,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.25,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.26,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.27,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#4,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767
> view matrix models
> #2.11,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.12,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.13,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.14,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.15,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.16,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.17,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.18,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.19,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.20,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.21,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.22,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.23,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.24,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.25,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.26,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.27,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#4,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397
> view matrix models
> #2.11,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.12,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.13,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.14,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.15,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.16,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.17,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.18,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.19,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.20,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.21,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.22,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.23,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.24,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.25,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.26,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.27,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#4,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012
> ui mousemode right "rotate selected models"
> view matrix models
> #2.11,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.12,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.13,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.14,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.15,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.16,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.17,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.18,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.19,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.20,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.21,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.22,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.23,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.24,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.25,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.26,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.27,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#4,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927
> view matrix models
> #2.11,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.12,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.13,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.14,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.15,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.16,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.17,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.18,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.19,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.20,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.21,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.22,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.23,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.24,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.25,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.26,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.27,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#4,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978
> select add #2
85800 atoms, 87383 bonds, 23 pseudobonds, 11271 residues, 46 models selected
> select subtract #2
28554 atoms, 29081 bonds, 8 pseudobonds, 3753 residues, 2 models selected
> select subtract #4
Nothing selected
> ui tool show "Fit in Map"
> fitmap #4 inMap #1
Fit molecule combination (#4) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28554
atoms
average map value = 0.2992, steps = 112
shifted from previous position = 15.3
rotated from previous position = 21.4 degrees
atoms outside contour = 6626, contour level = 0.12
Position of combination (#4) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
-1.00000000 -0.00002298 -0.00000592 316.77674915
0.00002297 -0.99999999 0.00007630 316.74687067
-0.00000592 0.00007630 1.00000000 -0.01966736
Axis -0.00004486 0.00013737 0.99999999
Axis point 158.38655460 158.37525639 0.00000000
Rotation angle (degrees) 179.99868347
Shift along axis 0.00963571
> fitmap #4 inMap #1
Fit molecule combination (#4) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28554
atoms
average map value = 0.2994, steps = 28
shifted from previous position = 0.0333
rotated from previous position = 0.0185 degrees
atoms outside contour = 6627, contour level = 0.12
Position of combination (#4) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
-0.99999998 -0.00002596 0.00020068 316.71325904
0.00002592 -0.99999998 -0.00017126 316.77191032
0.00020068 -0.00017126 0.99999996 -0.01526541
Axis 0.00006324 0.00000227 1.00000000
Axis point 158.35457583 158.38800897 0.00000000
Rotation angle (degrees) 179.99851382
Shift along axis 0.00548476
> hide #!1 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> show #!2 models
> hide #!3 models
> hide #!4 models
> show #!4 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!1 models
> color zone #1 near #4 distance 11.3
> transparency 50
> transparency 0
> show #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> split 4
Expected a structures specifier or a keyword
> split #4
Split combination (#4) into 17 models
Chain information for combination K #4.1
---
Chain | Description
K | No description available
Chain information for combination L #4.2
---
Chain | Description
L | No description available
Chain information for combination M #4.3
---
Chain | Description
M | No description available
Chain information for combination N #4.4
---
Chain | Description
N | No description available
Chain information for combination O #4.5
---
Chain | Description
O | No description available
Chain information for combination P #4.6
---
Chain | Description
P | No description available
Chain information for combination Q #4.7
---
Chain | Description
Q | No description available
Chain information for combination R #4.8
---
Chain | Description
R | No description available
Chain information for combination S #4.9
---
Chain | Description
S | No description available
Chain information for combination T #4.10
---
Chain | Description
T | No description available
Chain information for combination U #4.11
---
Chain | Description
U | No description available
Chain information for combination V #4.12
---
Chain | Description
V | No description available
Chain information for combination W #4.13
---
Chain | Description
W | No description available
Chain information for combination X #4.14
---
Chain | Description
X | No description available
Chain information for combination Y #4.15
---
Chain | Description
Y | No description available
Chain information for combination Z #4.16
---
Chain | Description
Z | No description available
Chain information for combination a #4.17
---
Chain | Description
a | No description available
> hide #4.8 models
> hide #!4.9 models
> hide #4.10 models
> hide #!4.11 models
> hide #4.12 models
> hide #4.13 models
> hide #4.14 models
> hide #4.15 models
> hide #!4.16 models
> hide #!4.17 models
> select add #2.1
1720 atoms, 1759 bonds, 229 residues, 1 model selected
> select subtract #2.1
Nothing selected
> select add #2
57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 44 models selected
> select subtract #2
Nothing selected
> show #!2 models
> hide #2.1 models
> hide #2.2 models
> hide #2.3 models
> hide #!2.4 models
> hide #2.5 models
> hide #2.6 models
> show #2.6 models
> hide #2.7 models
> hide #2.8 models
> hide #2.6 models
> hide #!2.9 models
> hide #!2.10 models
> hide #!2.11 models
> hide #2.12 models
> hide #2.13 models
> hide #2.14 models
> hide #2.15 models
> hide #2.16 models
> hide #2.17 models
> hide #2.18 models
> hide #!2.19 models
> hide #2.20 models
> hide #!2.21 models
> hide #2.22 models
> hide #2.23 models
> hide #2.24 models
> hide #2.25 models
> hide #!2.26 models
> hide #!2.27 models
> hide #2.28 models
> hide #2.29 models
> hide #2.30 models
> hide #2.31 models
> hide #!2.32 models
> hide #2.33 models
> hide #2.34 models
> hide #!2 models
> hide #!1 models
> show #2.1 models
> show #2.2 models
> show #2.3 models
> show #!2.4 models
> show #2.5 models
> show #2.6 models
> show #2.7 models
> show #2.8 models
> show #!2.9 models
> show #!2.10 models
> select add #2.1
1720 atoms, 1759 bonds, 229 residues, 1 model selected
> select add #2.2
3522 atoms, 3589 bonds, 477 residues, 2 models selected
> select add #2.3
5290 atoms, 5380 bonds, 714 residues, 3 models selected
> select add #2.4
7063 atoms, 7181 bonds, 1 pseudobond, 952 residues, 5 models selected
> select add #2.5
8972 atoms, 9127 bonds, 1 pseudobond, 1199 residues, 6 models selected
> select add #2.6
10819 atoms, 11009 bonds, 1 pseudobond, 1440 residues, 7 models selected
> select add #2.7
12684 atoms, 12907 bonds, 1 pseudobond, 1686 residues, 8 models selected
> select add #2.8
13573 atoms, 13811 bonds, 1 pseudobond, 1797 residues, 9 models selected
> select add #2.9
15613 atoms, 15894 bonds, 4 pseudobonds, 2065 residues, 11 models selected
> select add #2.10
17496 atoms, 17817 bonds, 6 pseudobonds, 2313 residues, 13 models selected
> select add #4
46050 atoms, 46898 bonds, 14 pseudobonds, 6066 residues, 36 models selected
> select subtract #4
17496 atoms, 17817 bonds, 6 pseudobonds, 2313 residues, 13 models selected
> select add #4.1
19371 atoms, 19723 bonds, 7 pseudobonds, 2564 residues, 15 models selected
> select add #4.2
20962 atoms, 21343 bonds, 7 pseudobonds, 2768 residues, 16 models selected
> select add #4.3
22530 atoms, 22944 bonds, 7 pseudobonds, 2965 residues, 17 models selected
> select add #4.4
24079 atoms, 24524 bonds, 7 pseudobonds, 3165 residues, 18 models selected
> select add #4.5
25722 atoms, 26197 bonds, 7 pseudobonds, 3377 residues, 19 models selected
> select add #4.6
27345 atoms, 27851 bonds, 7 pseudobonds, 3585 residues, 20 models selected
> select add #4.7
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected
> show #!1 models
> combine sel
> hide #!4 models
> hide #!2 models
> color zone #1 near #5 distance 11.3
> fitmap #5 inMap #1
Fit molecule combination (#5) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
atoms
average map value = 0.3023, steps = 36
shifted from previous position = 0.0408
rotated from previous position = 0.00974 degrees
atoms outside contour = 6710, contour level = 0.12
Position of combination (#5) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
1.00000000 -0.00001293 -0.00004818 0.04488739
0.00001294 0.99999999 0.00016254 -0.01066532
0.00004818 -0.00016254 0.99999999 0.02476895
Axis -0.95598611 -0.28337362 0.07609178
Axis point 0.00000000 170.16262033 131.88556380
Rotation angle (degrees) 0.00974184
Shift along axis -0.03800473
> fitmap #5 inMap #1
Fit molecule combination (#5) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
atoms
average map value = 0.3023, steps = 40
shifted from previous position = 0.0141
rotated from previous position = 0.00922 degrees
atoms outside contour = 6706, contour level = 0.12
Position of combination (#5) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999999 0.00009943 -0.00008556 0.03076750
-0.00009943 0.99999999 0.00005366 0.02638276
0.00008556 -0.00005366 0.99999999 -0.00551184
Axis -0.37862231 -0.60370823 -0.70155650
Axis point 121.39937934 -219.14042275 0.00000000
Rotation angle (degrees) 0.00812030
Shift along axis -0.02370989
> fitmap #5 inMap #1
Fit molecule combination (#5) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
atoms
average map value = 0.3024, steps = 40
shifted from previous position = 0.0355
rotated from previous position = 0.0151 degrees
atoms outside contour = 6703, contour level = 0.12
Position of combination (#5) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999997 0.00020762 0.00014925 -0.05458065
-0.00020762 0.99999998 -0.00000047 0.04181406
-0.00014925 0.00000044 0.99999999 0.03057363
Axis 0.00179065 0.58368775 -0.81197624
Axis point 202.82044299 262.91307017 0.00000000
Rotation angle (degrees) 0.01465046
Shift along axis -0.00051644
> fitmap #5 inMap #1
Fit molecule combination (#5) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
atoms
average map value = 0.3023, steps = 28
shifted from previous position = 0.0268
rotated from previous position = 0.0144 degrees
atoms outside contour = 6703, contour level = 0.12
Position of combination (#5) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
1.00000000 0.00002559 0.00001562 0.01822379
-0.00002559 0.99999999 0.00010870 0.00396059
-0.00001562 -0.00010870 0.99999999 0.02718273
Axis -0.96400970 0.13853707 -0.22692020
Axis point 0.00000000 201.67477696 -65.97879906
Rotation angle (degrees) 0.00646037
Shift along axis -0.02318753
> fitmap #5 inMap #1
Fit molecule combination (#5) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
atoms
average map value = 0.3024, steps = 40
shifted from previous position = 0.0237
rotated from previous position = 0.00628 degrees
atoms outside contour = 6706, contour level = 0.12
Position of combination (#5) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
1.00000000 0.00000538 -0.00008487 0.01691860
-0.00000537 0.99999999 0.00014727 -0.01338798
0.00008487 -0.00014727 0.99999999 0.02729926
Axis -0.86598736 -0.49906574 -0.03161156
Axis point 0.00000000 183.45838002 120.85152622
Rotation angle (degrees) 0.00974388
Shift along axis -0.00883279
> fitmap #5 inMap #1
Fit molecule combination (#5) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
atoms
average map value = 0.3022, steps = 40
shifted from previous position = 0.0353
rotated from previous position = 0.0176 degrees
atoms outside contour = 6703, contour level = 0.12
Position of combination (#5) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999999 -0.00000251 0.00015530 0.00801717
0.00000252 1.00000000 -0.00004330 0.02944592
-0.00015530 0.00004330 0.99999999 0.01904566
Axis 0.26855366 0.96313829 0.01560631
Axis point 119.53797027 0.00000000 1.66521043
Rotation angle (degrees) 0.00923886
Shift along axis 0.03081076
> split #5
Split combination (#5) into 17 models
Chain information for combination A #5.1
---
Chain | Description
A | No description available
Chain information for combination B #5.2
---
Chain | Description
B | No description available
Chain information for combination C #5.3
---
Chain | Description
C | No description available
Chain information for combination D #5.4
---
Chain | Description
D | No description available
Chain information for combination E #5.5
---
Chain | Description
E | No description available
Chain information for combination F #5.6
---
Chain | Description
F | No description available
Chain information for combination G #5.7
---
Chain | Description
G | No description available
Chain information for combination H #5.8
---
Chain | Description
H | No description available
Chain information for combination I #5.9
---
Chain | Description
I | No description available
Chain information for combination J #5.10
---
Chain | Description
J | No description available
Chain information for combination K #5.11
---
Chain | Description
K | No description available
Chain information for combination L #5.12
---
Chain | Description
L | No description available
Chain information for combination M #5.13
---
Chain | Description
M | No description available
Chain information for combination N #5.14
---
Chain | Description
N | No description available
Chain information for combination O #5.15
---
Chain | Description
O | No description available
Chain information for combination P #5.16
---
Chain | Description
P | No description available
Chain information for combination Q #5.17
---
Chain | Description
Q | No description available
> select add #5.1
30520 atoms, 31090 bonds, 7 pseudobonds, 4009 residues, 22 models selected
> show #!3 models
> hide #!3 models
> hide #!1 models
> hide #!5 models
> show #!2 models
> show #!2.26 models
> hide #!2.26 models
> show #!2.26 models
> hide #!2.26 models
> show #!2.27 models
> hide #!2.27 models
> show #!2.27 models
> hide #!2.27 models
> select subtract #5.1
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected
> hide #!2 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!2 models
> hide #!2 models
> hide #!4 models
> show #!5 models
> select add #5.1
30520 atoms, 31090 bonds, 7 pseudobonds, 4009 residues, 22 models selected
> show #!1 models
> transparency 50
> view matrix models
> #2.1,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.2,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.3,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.4,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.5,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.6,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.7,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.8,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.9,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.10,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#4.1,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.2,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.3,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.4,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.5,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.6,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.7,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#5.1,0.99043,-0.13784,0.0071219,12.974,0.13712,0.98852,0.063395,-26.868,-0.015778,-0.061811,0.99796,8.1357
> undo
> ui mousemode right "rotate selected models"
> ui mousemode right select
> fitmap #5.1 inMap #1
Fit molecule combination A (#5.1) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1720
atoms
average map value = 0.3413, steps = 40
shifted from previous position = 0.053
rotated from previous position = 0.142 degrees
atoms outside contour = 270, contour level = 0.12
Position of combination A (#5.1) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999987 -0.00014443 0.00048105 -0.06767842
0.00014327 0.99999707 0.00241711 -0.38461886
-0.00048140 -0.00241704 0.99999696 0.25393103
Axis -0.97908452 0.19493112 0.05826980
Axis point 0.00000000 104.71133799 159.74133817
Rotation angle (degrees) 0.14144665
Shift along axis 0.00608522
> fitmap #5.1 inMap #1
Fit molecule combination A (#5.1) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1720
atoms
average map value = 0.3413, steps = 48
shifted from previous position = 0.00162
rotated from previous position = 0.0316 degrees
atoms outside contour = 272, contour level = 0.12
Position of combination A (#5.1) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999987 0.00038156 0.00032756 -0.09055737
-0.00038233 0.99999715 0.00235454 -0.30191074
-0.00032667 -0.00235467 0.99999717 0.22640944
Axis -0.97794486 0.13586165 -0.15863624
Axis point 0.00000000 96.78188161 129.01257642
Rotation angle (degrees) 0.13795157
Shift along axis 0.01162528
> fitmap #5.1 inMap #1
Fit molecule combination A (#5.1) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1720
atoms
average map value = 0.3412, steps = 48
shifted from previous position = 0.00755
rotated from previous position = 0.0278 degrees
atoms outside contour = 271, contour level = 0.12
Position of combination A (#5.1) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999995 -0.00010336 0.00031290 -0.03829829
0.00010263 0.99999727 0.00233421 -0.36312342
-0.00031314 -0.00233418 0.99999723 0.21721202
Axis -0.99018140 0.13278565 0.04368943
Axis point 0.00000000 92.88731643 155.62859774
Rotation angle (degrees) 0.13506581
Shift along axis -0.00080545
> fitmap #5.1 inMap #1
Fit molecule combination A (#5.1) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1720
atoms
average map value = 0.3414, steps = 28
shifted from previous position = 0.0283
rotated from previous position = 0.046 degrees
atoms outside contour = 272, contour level = 0.12
Position of combination A (#5.1) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999945 -0.00024274 0.00102203 -0.15643426
0.00024000 0.99999637 0.00268297 -0.44729935
-0.00102268 -0.00268272 0.99999588 0.36716941
Axis -0.93116609 0.35484013 0.08377464
Axis point 0.00000000 136.05145639 169.24361450
Rotation angle (degrees) 0.16507911
Shift along axis 0.01770600
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3273, steps = 28
shifted from previous position = 0.0451
rotated from previous position = 0.188 degrees
atoms outside contour = 332, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999632 0.00194753 -0.00188954 0.16920159
-0.00194443 0.99999676 0.00164264 -0.03766470
0.00189274 -0.00163896 0.99999687 -0.07536082
Axis -0.51743369 -0.59637884 -0.61367308
Axis point -25.01292413 -81.92142410 0.00000000
Rotation angle (degrees) 0.18168735
Shift along axis -0.01884126
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3273, steps = 28
shifted from previous position = 0.032
rotated from previous position = 0.0115 degrees
atoms outside contour = 331, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999675 0.00186293 -0.00173860 0.17196425
-0.00186026 0.99999708 0.00153982 -0.03820704
0.00174146 -0.00153658 0.99999730 -0.08489080
Axis -0.51678832 -0.58459771 -0.62544013
Axis point -24.62302485 -88.62303706 0.00000000
Rotation angle (degrees) 0.17053876
Shift along axis -0.01343925
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3273, steps = 40
shifted from previous position = 0.0113
rotated from previous position = 0.00823 degrees
atoms outside contour = 331, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999640 0.00198829 -0.00180397 0.16441388
-0.00198547 0.99999680 0.00156522 -0.02173207
0.00180708 -0.00156163 0.99999715 -0.08475845
Axis -0.50323407 -0.58116184 -0.63953607
Axis point -15.47375493 -78.69421275 0.00000000
Rotation angle (degrees) 0.17800386
Shift along axis -0.01590273
> select add #5
57600 atoms, 58662 bonds, 14 pseudobonds, 7560 residues, 43 models selected
> select subtract #5
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected
> select add #5.1
30520 atoms, 31090 bonds, 7 pseudobonds, 4009 residues, 22 models selected
> select add #5.2
32322 atoms, 32920 bonds, 7 pseudobonds, 4257 residues, 23 models selected
> select subtract #5.1
30602 atoms, 31161 bonds, 7 pseudobonds, 4028 residues, 22 models selected
> select add #5.3
32370 atoms, 32952 bonds, 7 pseudobonds, 4265 residues, 23 models selected
> select subtract #5.2
30568 atoms, 31122 bonds, 7 pseudobonds, 4017 residues, 22 models selected
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3272, steps = 40
shifted from previous position = 0.0214
rotated from previous position = 0.0124 degrees
atoms outside contour = 332, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999607 0.00206866 -0.00189026 0.15780104
-0.00206536 0.99999634 0.00174742 -0.04096312
0.00189387 -0.00174351 0.99999669 -0.06466432
Axis -0.52870715 -0.57311378 -0.62610650
Axis point -25.10889323 -71.35384233 0.00000000
Rotation angle (degrees) 0.18915526
Shift along axis -0.01946725
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3274, steps = 28
shifted from previous position = 0.0463
rotated from previous position = 0.0653 degrees
atoms outside contour = 332, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999676 0.00176926 -0.00182951 0.19913342
-0.00176807 0.99999823 0.00064807 0.11839739
0.00183065 -0.00064483 0.99999812 -0.20096513
Axis -0.24618245 -0.69693897 -0.67355050
Axis point 108.48417930 0.00000000 109.16735892
Rotation angle (degrees) 0.15045232
Shift along axis 0.00382125
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3273, steps = 40
shifted from previous position = 0.0484
rotated from previous position = 0.0632 degrees
atoms outside contour = 332, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999665 0.00189716 -0.00175967 0.14848035
-0.00189409 0.99999669 0.00174145 -0.06137092
0.00176297 -0.00173811 0.99999694 -0.04630911
Axis -0.55796352 -0.56487126 -0.60794504
Axis point -38.24712152 -72.44228174 0.00000000
Rotation angle (degrees) 0.17865335
Shift along axis -0.02002656
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3274, steps = 28
shifted from previous position = 0.0449
rotated from previous position = 0.0432 degrees
atoms outside contour = 333, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999698 0.00170433 -0.00177267 0.19498351
-0.00170254 0.99999804 0.00101205 0.04071982
0.00177439 -0.00100903 0.99999792 -0.15373000
Axis -0.38009859 -0.66708512 -0.64072030
Axis point 87.76975472 0.00000000 109.24874400
Rotation angle (degrees) 0.15232832
Shift along axis -0.00277861
> select add #5.4
32341 atoms, 32923 bonds, 8 pseudobonds, 4255 residues, 24 models selected
> select subtract #5.3
30573 atoms, 31132 bonds, 8 pseudobonds, 4018 residues, 23 models selected
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3272, steps = 40
shifted from previous position = 0.045
rotated from previous position = 0.0527 degrees
atoms outside contour = 333, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999617 0.00204557 -0.00186320 0.15339725
-0.00204211 0.99999618 0.00186154 -0.06556602
0.00186700 -0.00185772 0.99999653 -0.04840320
Axis -0.55781336 -0.55945571 -0.61306897
Axis point -37.23965871 -69.82075763 0.00000000
Rotation angle (degrees) 0.19101210
Shift along axis -0.01921125
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3274, steps = 40
shifted from previous position = 0.0284
rotated from previous position = 0.0413 degrees
atoms outside contour = 332, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999682 0.00178086 -0.00178776 0.18373265
-0.00177872 0.99999770 0.00119554 0.02027378
0.00178988 -0.00119235 0.99999769 -0.12271194
Axis -0.42769170 -0.64078617 -0.63755227
Axis point 73.43773789 0.00000000 99.45134682
Rotation angle (degrees) 0.15994714
Shift along axis -0.01333681
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3272, steps = 40
shifted from previous position = 0.0228
rotated from previous position = 0.0464 degrees
atoms outside contour = 333, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999604 0.00208393 -0.00189123 0.15918667
-0.00208026 0.99999595 0.00193997 -0.07683383
0.00189526 -0.00193603 0.99999633 -0.04812908
Axis -0.56717745 -0.55407948 -0.60934856
Axis point -41.69328581 -71.46239601 0.00000000
Rotation angle (degrees) 0.19577559
Shift along axis -0.01838766
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3274, steps = 28
shifted from previous position = 0.0408
rotated from previous position = 0.0635 degrees
atoms outside contour = 334, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999702 0.00167597 -0.00177723 0.19892382
-0.00167434 0.99999818 0.00091580 0.05529019
0.00177876 -0.00091283 0.99999800 -0.16493651
Axis -0.35053726 -0.68165997 -0.64223307
Axis point 93.38949904 0.00000000 111.47838496
Rotation angle (degrees) 0.14944628
Shift along axis -0.00149164
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3272, steps = 40
shifted from previous position = 0.0453
rotated from previous position = 0.0594 degrees
atoms outside contour = 333, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999576 0.00221638 -0.00188842 0.14480242
-0.00221299 0.99999594 0.00179448 -0.02962851
0.00189239 -0.00179030 0.99999661 -0.05753536
Axis -0.52420869 -0.55287550 -0.64771439
Axis point -18.83931489 -60.10426990 0.00000000
Rotation angle (degrees) 0.19590772
Shift along axis -0.02225932
> select add #5.5
32482 atoms, 33078 bonds, 8 pseudobonds, 4265 residues, 24 models selected
> select subtract #5.4
30709 atoms, 31277 bonds, 7 pseudobonds, 4027 residues, 22 models selected
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3274, steps = 28
shifted from previous position = 0.0366
rotated from previous position = 0.0438 degrees
atoms outside contour = 332, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999691 0.00175813 -0.00175706 0.18618813
-0.00175603 0.99999774 0.00119555 0.01510663
0.00175915 -0.00119246 0.99999774 -0.12556137
Axis -0.43299877 -0.63756729 -0.63719700
Axis point 75.21898799 0.00000000 103.30942789
Rotation angle (degrees) 0.15799444
Shift along axis -0.01024340
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3273, steps = 40
shifted from previous position = 0.0329
rotated from previous position = 0.0343 degrees
atoms outside contour = 332, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999607 0.00206106 -0.00190198 0.16284030
-0.00205785 0.99999645 0.00169119 -0.03179377
0.00190546 -0.00168727 0.99999676 -0.07355126
Axis -0.51595504 -0.58146792 -0.62903534
Axis point -20.76558175 -74.22492464 0.00000000
Rotation angle (degrees) 0.18758600
Shift along axis -0.01926487
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3274, steps = 28
shifted from previous position = 0.0398
rotated from previous position = 0.0444 degrees
atoms outside contour = 333, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999700 0.00169536 -0.00177027 0.19564615
-0.00169356 0.99999805 0.00101922 0.03826950
0.00177199 -0.00101622 0.99999791 -0.15223992
Axis -0.38346384 -0.66733733 -0.63844841
Axis point 87.25578931 0.00000000 109.64082340
Rotation angle (degrees) 0.15206479
Shift along axis -0.00336456
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3272, steps = 40
shifted from previous position = 0.0457
rotated from previous position = 0.0584 degrees
atoms outside contour = 333, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999602 0.00218121 -0.00178990 0.12656876
-0.00217778 0.99999579 0.00191598 -0.05681822
0.00179407 -0.00191207 0.99999656 -0.03242655
Axis -0.56137550 -0.52558084 -0.63923574
Axis point -30.92617629 -52.81709053 0.00000000
Rotation angle (degrees) 0.19535209
Shift along axis -0.02046182
> fitmap #5.2 inMap #1
Fit molecule combination B (#5.2) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
atoms
average map value = 0.3274, steps = 28
shifted from previous position = 0.0467
rotated from previous position = 0.0691 degrees
atoms outside contour = 334, contour level = 0.12
Position of combination B (#5.2) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999703 0.00166314 -0.00178364 0.20092020
-0.00166167 0.99999828 0.00082533 0.07090658
0.00178501 -0.00082236 0.99999807 -0.17432325
Axis -0.32004971 -0.69317680 -0.64581275
Axis point 98.09786181 0.00000000 112.32579069
Rotation angle (degrees) 0.14748649
Shift along axis -0.00087507
> fitmap #5.3 inMap #1
Fit molecule combination C (#5.3) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1768
atoms
average map value = 0.3056, steps = 40
shifted from previous position = 0.0421
rotated from previous position = 0.205 degrees
atoms outside contour = 374, contour level = 0.12
Position of combination C (#5.3) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999736 0.00121050 -0.00195553 0.30809893
-0.00121573 0.99999569 -0.00267381 0.68825308
0.00195229 0.00267618 0.99999451 -0.50249424
Axis 0.75827304 -0.55386883 -0.34387688
Axis point 0.00000000 185.06276669 262.33018072
Rotation angle (degrees) 0.20212565
Shift along axis 0.02521734
> fitmap #5.3 inMap #1
Fit molecule combination C (#5.3) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1768
atoms
average map value = 0.3056, steps = 40
shifted from previous position = 0.00202
rotated from previous position = 0.0131 degrees
atoms outside contour = 374, contour level = 0.12
Position of combination C (#5.3) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999713 0.00127702 -0.00202729 0.31679638
-0.00128202 0.99999613 -0.00246731 0.65366717
0.00202413 0.00246990 0.99999490 -0.48652470
Axis 0.71758430 -0.58884266 -0.37193695
Axis point 0.00000000 194.01881115 270.20634326
Rotation angle (degrees) 0.19710714
Shift along axis 0.02337751
> fitmap #5.3 inMap #1
Fit molecule combination C (#5.3) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1768
atoms
average map value = 0.3055, steps = 44
shifted from previous position = 0.0168
rotated from previous position = 0.0194 degrees
atoms outside contour = 376, contour level = 0.12
Position of combination C (#5.3) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999707 0.00117080 -0.00211850 0.34849132
-0.00117668 0.99999545 -0.00277632 0.68915318
0.00211524 0.00277880 0.99999390 -0.53659035
Axis 0.75390301 -0.57457302 -0.31858453
Axis point 0.00000000 189.33906889 255.71953578
Rotation angle (degrees) 0.21109204
Shift along axis 0.03770921
> fitmap #5.4 inMap #1
Fit molecule combination D (#5.4) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1773
atoms
average map value = 0.3068, steps = 44
shifted from previous position = 0.0555
rotated from previous position = 0.229 degrees
atoms outside contour = 380, contour level = 0.12
Position of combination D (#5.4) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999579 -0.00101424 -0.00271761 0.67202100
0.00100709 0.99999603 -0.00263128 0.38927866
0.00272027 0.00262853 0.99999285 -0.59352657
Axis 0.67167935 -0.69441969 0.25812428
Axis point 221.46120935 0.00000000 240.05585247
Rotation angle (degrees) 0.22433736
Shift along axis 0.02785624
> fitmap #5.4 inMap #1
Fit molecule combination D (#5.4) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1773
atoms
average map value = 0.3069, steps = 36
shifted from previous position = 0.0354
rotated from previous position = 0.0529 degrees
atoms outside contour = 377, contour level = 0.12
Position of combination D (#5.4) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999675 -0.00010724 -0.00254626 0.49326906
0.00010065 0.99999665 -0.00258763 0.46725754
0.00254653 0.00258737 0.99999341 -0.60181254
Axis 0.71245383 -0.70113511 0.02861969
Axis point 0.00000000 233.13316373 182.05886415
Rotation angle (degrees) 0.20808803
Shift along axis 0.00659707
> fitmap #5.4 inMap #1
Fit molecule combination D (#5.4) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1773
atoms
average map value = 0.3069, steps = 40
shifted from previous position = 0.0022
rotated from previous position = 0.0213 degrees
atoms outside contour = 377, contour level = 0.12
Position of combination D (#5.4) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999658 -0.00047803 -0.00257061 0.55225173
0.00047132 0.99999649 -0.00260848 0.43626956
0.00257185 0.00260726 0.99999329 -0.60628149
Axis 0.70618361 -0.69626351 0.12853729
Axis point 0.00000000 233.38066041 169.15261130
Rotation angle (degrees) 0.21158811
Shift along axis 0.00830277
> fitmap #5.4 inMap #1
Fit molecule combination D (#5.4) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1773
atoms
average map value = 0.3068, steps = 36
shifted from previous position = 0.0287
rotated from previous position = 0.0144 degrees
atoms outside contour = 381, contour level = 0.12
Position of combination D (#5.4) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999651 -0.00072039 -0.00254016 0.59496329
0.00071392 0.99999650 -0.00254747 0.39679491
0.00254199 0.00254565 0.99999353 -0.57046969
Axis 0.69420958 -0.69271390 0.19550067
Axis point 0.00000000 226.55531913 162.69226779
Rotation angle (degrees) 0.21017772
Shift along axis 0.02663666
> fitmap #5.4 inMap #1
Fit molecule combination D (#5.4) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1773
atoms
average map value = 0.3069, steps = 40
shifted from previous position = 0.0368
rotated from previous position = 0.0326 degrees
atoms outside contour = 377, contour level = 0.12
Position of combination D (#5.4) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999700 -0.00016638 -0.00244578 0.48715979
0.00016039 0.99999698 -0.00245207 0.43344363
0.00244618 0.00245167 0.99999400 -0.58303806
Axis 0.70716975 -0.70547168 0.04712385
Axis point 0.00000000 238.46853282 179.70885922
Rotation angle (degrees) 0.19865386
Shift along axis 0.01124746
> fitmap #5.5 inMap #1
Fit molecule combination E (#5.5) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1909
atoms
average map value = 0.3243, steps = 40
shifted from previous position = 0.0449
rotated from previous position = 0.0444 degrees
atoms outside contour = 368, contour level = 0.12
Position of combination E (#5.5) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999981 0.00030122 -0.00053955 0.03251072
-0.00030116 0.99999995 0.00011320 0.04230695
0.00053959 -0.00011304 0.99999985 -0.01227929
Axis -0.18006346 -0.85890172 -0.47944238
Axis point 55.02804945 0.00000000 48.11972921
Rotation angle (degrees) 0.03599374
Shift along axis -0.03630430
> fitmap #5.5 inMap #1
Fit molecule combination E (#5.5) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1909
atoms
average map value = 0.3243, steps = 60
shifted from previous position = 0.0295
rotated from previous position = 0.0394 degrees
atoms outside contour = 365, contour level = 0.12
Position of combination E (#5.5) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999926 0.00031659 -0.00117705 0.12683874
-0.00031675 0.99999994 -0.00014282 0.07442856
0.00117700 0.00014320 0.99999930 -0.13362543
Axis 0.11652864 -0.95908260 -0.25803417
Axis point 118.44582641 0.00000000 109.87542125
Rotation angle (degrees) 0.07031577
Shift along axis -0.02212286
> fitmap #5.5 inMap #1
Fit molecule combination E (#5.5) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1909
atoms
average map value = 0.3243, steps = 60
shifted from previous position = 0.00338
rotated from previous position = 0.0127 degrees
atoms outside contour = 366, contour level = 0.12
Position of combination E (#5.5) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999897 0.00042295 -0.00136890 0.14311392
-0.00042310 0.99999990 -0.00011260 0.07586381
0.00136885 0.00011318 0.99999906 -0.14679386
Axis 0.07855095 -0.95246674 -0.29434139
Axis point 111.14072601 0.00000000 105.48528312
Rotation angle (degrees) 0.08234493
Shift along axis -0.01780851
> fitmap #5.5 inMap #1
Fit molecule combination E (#5.5) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1909
atoms
average map value = 0.3243, steps = 40
shifted from previous position = 0.0297
rotated from previous position = 0.0348 degrees
atoms outside contour = 366, contour level = 0.12
Position of combination E (#5.5) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999912 0.00084530 -0.00102328 0.02046048
-0.00084514 0.99999963 0.00015306 0.09354168
0.00102340 -0.00015220 0.99999946 -0.05855206
Axis -0.11424507 -0.76596747 -0.63264674
Axis point 80.05967188 0.00000000 15.80143615
Rotation angle (degrees) 0.07654773
Shift along axis -0.03694462
> select add #5.6
32556 atoms, 33159 bonds, 7 pseudobonds, 4268 residues, 23 models selected
> select subtract #5.5
30647 atoms, 31213 bonds, 7 pseudobonds, 4021 residues, 22 models selected
> fitmap #5.6 inMap #1
Fit molecule combination F (#5.6) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
atoms
average map value = 0.3178, steps = 48
shifted from previous position = 0.0258
rotated from previous position = 0.0743 degrees
atoms outside contour = 354, contour level = 0.12
Position of combination F (#5.6) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999921 0.00008509 0.00125521 -0.16762757
-0.00008589 0.99999979 0.00063867 -0.07248961
-0.00125516 -0.00063878 0.99999901 0.21094595
Axis -0.45269463 0.88960479 -0.06058783
Axis point 167.89054094 0.00000000 134.15012567
Rotation angle (degrees) 0.08084131
Shift along axis -0.00138376
> fitmap #5.6 inMap #1
Fit molecule combination F (#5.6) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
atoms
average map value = 0.3175, steps = 44
shifted from previous position = 0.043
rotated from previous position = 0.0503 degrees
atoms outside contour = 352, contour level = 0.12
Position of combination F (#5.6) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999830 0.00075684 0.00168338 -0.33314867
-0.00075729 0.99999968 0.00026733 0.08416048
-0.00168318 -0.00026860 0.99999855 0.21379988
Axis -0.14367805 0.90254293 -0.40592225
Axis point 135.78578792 0.00000000 194.88073754
Rotation angle (degrees) 0.10685898
Shift along axis 0.03703847
> fitmap #5.6 inMap #1
Fit molecule combination F (#5.6) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
atoms
average map value = 0.3177, steps = 44
shifted from previous position = 0.0344
rotated from previous position = 0.0552 degrees
atoms outside contour = 353, contour level = 0.12
Position of combination F (#5.6) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999936 0.00085886 0.00073511 -0.20117157
-0.00085916 0.99999955 0.00040384 0.05242997
-0.00073476 -0.00040447 0.99999965 0.11641295
Axis -0.33663476 0.61215541 -0.71550178
Axis point 49.13262785 227.79085998 0.00000000
Rotation angle (degrees) 0.06878760
Shift along axis 0.01652296
> fitmap #5.6 inMap #1
Fit molecule combination F (#5.6) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
atoms
average map value = 0.3177, steps = 44
shifted from previous position = 0.00607
rotated from previous position = 0.0219 degrees
atoms outside contour = 352, contour level = 0.12
Position of combination F (#5.6) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999937 0.00058257 0.00095838 -0.19524469
-0.00058309 0.99999968 0.00054686 0.00626368
-0.00095806 -0.00054742 0.99999939 0.16397935
Axis -0.43844958 0.76786935 -0.46705314
Axis point 177.77311985 0.00000000 197.51457778
Rotation angle (degrees) 0.07149907
Shift along axis 0.01382757
> hide #5.7 models
> select add #5.7
32512 atoms, 33111 bonds, 7 pseudobonds, 4267 residues, 23 models selected
> select subtract #5.6
30665 atoms, 31229 bonds, 7 pseudobonds, 4026 residues, 22 models selected
> show #5.7 models
> fitmap #5.6 inMap #1
Fit molecule combination F (#5.6) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
atoms
average map value = 0.3178, steps = 44
shifted from previous position = 0.0127
rotated from previous position = 0.0241 degrees
atoms outside contour = 351, contour level = 0.12
Position of combination F (#5.6) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999924 0.00025199 0.00120952 -0.19236483
-0.00025257 0.99999985 0.00047684 -0.02857304
-0.00120940 -0.00047714 0.99999915 0.17866200
Axis -0.36016367 0.91323369 -0.19048978
Axis point 149.06036575 0.00000000 156.40974755
Rotation angle (degrees) 0.07588100
Shift along axis 0.00915568
> fitmap #5.6 inMap #1
Fit molecule combination F (#5.6) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
atoms
average map value = 0.3177, steps = 44
shifted from previous position = 0.0242
rotated from previous position = 0.0184 degrees
atoms outside contour = 354, contour level = 0.12
Position of combination F (#5.6) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999884 0.00028610 0.00149573 -0.25522564
-0.00028660 0.99999990 0.00033352 0.00852715
-0.00149564 -0.00033395 0.99999883 0.18678061
Axis -0.21407061 0.95939428 -0.18367469
Axis point 128.25415062 0.00000000 166.65496552
Rotation angle (degrees) 0.08932346
Shift along axis 0.02851034
> fitmap #5.7 inMap #1
Fit molecule combination G (#5.7) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1865
atoms
average map value = 0.3079, steps = 40
shifted from previous position = 0.0372
rotated from previous position = 0.109 degrees
atoms outside contour = 418, contour level = 0.12
Position of combination G (#5.7) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999857 0.00111817 0.00126845 -0.29201334
-0.00111676 0.99999876 -0.00110838 0.29301652
-0.00126969 0.00110697 0.99999858 0.05645919
Axis 0.54796403 0.62780492 -0.55280774
Axis point 41.04942223 0.00000000 227.12009064
Rotation angle (degrees) 0.11581983
Shift along axis -0.00726667
> fitmap #5.7 inMap #1
Fit molecule combination G (#5.7) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1865
atoms
average map value = 0.3078, steps = 48
shifted from previous position = 0.0133
rotated from previous position = 0.0454 degrees
atoms outside contour = 418, contour level = 0.12
Position of combination G (#5.7) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999721 0.00134408 0.00194133 -0.40642310
-0.00134125 0.99999803 -0.00146006 0.37257318
-0.00194329 0.00145745 0.99999705 0.08940663
Axis 0.52558714 0.69981048 -0.48375970
Axis point 46.65137815 0.00000000 210.46715975
Rotation angle (degrees) 0.15902351
Shift along axis 0.00386854
> select add #5.8
31554 atoms, 32133 bonds, 7 pseudobonds, 4137 residues, 23 models selected
> select subtract #5.7
29689 atoms, 30235 bonds, 7 pseudobonds, 3891 residues, 22 models selected
> fitmap #5.7 inMap #1
Fit molecule combination G (#5.7) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1865
atoms
average map value = 0.3077, steps = 44
shifted from previous position = 0.0455
rotated from previous position = 0.0642 degrees
atoms outside contour = 426, contour level = 0.12
Position of combination G (#5.7) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999783 0.00099386 0.00183210 -0.34934666
-0.00099312 0.99999943 -0.00039978 0.16555898
-0.00183250 0.00039796 0.99999824 0.23017648
Axis 0.18795584 0.86342441 -0.46815692
Axis point 117.64301289 -0.00000000 187.69422638
Rotation angle (degrees) 0.12158916
Shift along axis -0.03047279
> fitmap #5.7 inMap #1
Fit molecule combination G (#5.7) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1865
atoms
average map value = 0.3077, steps = 48
shifted from previous position = 0.021
rotated from previous position = 0.0201 degrees
atoms outside contour = 426, contour level = 0.12
Position of combination G (#5.7) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999814 0.00113679 0.00155570 -0.30883772
-0.00113592 0.99999920 -0.00056217 0.21460771
-0.00155633 0.00056040 0.99999863 0.17426485
Axis 0.27968335 0.77534336 -0.56623308
Axis point 105.01201182 0.00000000 195.29191178
Rotation angle (degrees) 0.11498532
Shift along axis -0.01865663
> fitmap #5.8 inMap #1
Fit molecule combination H (#5.8) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms
average map value = 0.2027, steps = 40
shifted from previous position = 0.03
rotated from previous position = 0.19 degrees
atoms outside contour = 353, contour level = 0.12
Position of combination H (#5.8) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999440 -0.00275694 0.00189722 0.04382613
0.00275592 0.99999606 0.00054021 -0.41537653
-0.00189870 -0.00053498 0.99999805 0.30954556
Axis -0.15860298 0.55994154 0.81321004
Axis point 153.22144657 16.28661118 0.00000000
Rotation angle (degrees) 0.19420795
Shift along axis 0.01218802
> fitmap #5.8 inMap #1
Fit molecule combination H (#5.8) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms
average map value = 0.2027, steps = 44
shifted from previous position = 0.0236
rotated from previous position = 0.0738 degrees
atoms outside contour = 353, contour level = 0.12
Position of combination H (#5.8) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999284 -0.00300611 0.00229986 0.00578704
0.00300211 0.99999398 0.00173846 -0.63111976
-0.00230507 -0.00173154 0.99999584 0.49879301
Axis -0.41669862 0.55298733 0.72150348
Axis point 211.79032217 2.59427673 0.00000000
Rotation angle (degrees) 0.23856193
Shift along axis 0.00846821
> fitmap #5.8 inMap #1
Fit molecule combination H (#5.8) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms
average map value = 0.2027, steps = 44
shifted from previous position = 0.00296
rotated from previous position = 0.0212 degrees
atoms outside contour = 352, contour level = 0.12
Position of combination H (#5.8) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999180 -0.00305021 0.00266373 -0.04766558
0.00304571 0.99999393 0.00169218 -0.62695795
-0.00266887 -0.00168405 0.99999502 0.54025313
Axis -0.38476741 0.60772305 0.69471342
Axis point 208.34362778 -14.59203511 0.00000000
Rotation angle (degrees) 0.25137801
Shift along axis 0.01264446
> fitmap #5.8 inMap #1
Fit molecule combination H (#5.8) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms
average map value = 0.2027, steps = 40
shifted from previous position = 0.0273
rotated from previous position = 0.0629 degrees
atoms outside contour = 352, contour level = 0.12
Position of combination H (#5.8) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999426 -0.00263806 0.00212706 0.00609837
0.00263631 0.99999618 0.00082622 -0.43129337
-0.00212924 -0.00082060 0.99999740 0.38125234
Axis -0.23611174 0.61024417 0.75620983
Axis point 169.08289667 4.06240884 0.00000000
Rotation angle (degrees) 0.19981220
Shift along axis 0.02367260
> fitmap #5.8 inMap #1
Fit molecule combination H (#5.8) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms
average map value = 0.2026, steps = 44
shifted from previous position = 0.0368
rotated from previous position = 0.0686 degrees
atoms outside contour = 353, contour level = 0.12
Position of combination H (#5.8) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999182 -0.00306291 0.00264073 -0.04701339
0.00305810 0.99999366 0.00182195 -0.64951378
-0.00264629 -0.00181386 0.99999485 0.54552389
Axis -0.41000057 0.59620149 0.69024873
Axis point 214.03359243 -14.77196932 0.00000000
Rotation angle (degrees) 0.25404550
Shift along axis 0.00858160
> fitmap #5.8 inMap #1
Fit molecule combination H (#5.8) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms
average map value = 0.2027, steps = 40
shifted from previous position = 0.0311
rotated from previous position = 0.0683 degrees
atoms outside contour = 352, contour level = 0.12
Position of combination H (#5.8) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999418 -0.00269849 0.00208750 0.01434101
0.00269676 0.99999602 0.00082952 -0.44229254
-0.00208973 -0.00082389 0.99999748 0.37299289
Axis -0.23550037 0.59497929 0.76846550
Axis point 168.45313101 6.70530163 0.00000000
Rotation angle (degrees) 0.20113195
Shift along axis 0.02009995
> fitmap #5.8 inMap #1
Fit molecule combination H (#5.8) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms
average map value = 0.2027, steps = 44
shifted from previous position = 0.0132
rotated from previous position = 0.00682 degrees
atoms outside contour = 352, contour level = 0.12
Position of combination H (#5.8) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999443 -0.00261188 0.00207931 0.01310919
0.00261032 0.99999631 0.00074822 -0.41864656
-0.00208126 -0.00074278 0.99999756 0.37169683
Axis -0.21793788 0.60814563 0.76332298
Axis point 166.51097364 6.85577371 0.00000000
Rotation angle (degrees) 0.19599210
Shift along axis 0.02626967
> fitmap #5.8 inMap #1
Fit molecule combination H (#5.8) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms
average map value = 0.2026, steps = 44
shifted from previous position = 0.0426
rotated from previous position = 0.0682 degrees
atoms outside contour = 351, contour level = 0.12
Position of combination H (#5.8) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999420 -0.00270177 0.00207359 0.00837488
0.00269776 0.99999449 0.00193617 -0.61510474
-0.00207881 -0.00193057 0.99999598 0.48503672
Axis -0.49367475 0.53014517 0.68937025
Axis point 228.82633525 3.36514922 0.00000000
Rotation angle (degrees) 0.22438686
Shift along axis 0.00414061
> select add #5.9
31729 atoms, 32318 bonds, 10 pseudobonds, 4159 residues, 24 models selected
> select subtract #5.8
30840 atoms, 31414 bonds, 10 pseudobonds, 4048 residues, 23 models selected
> fitmap #5.9 inMap #1
Fit molecule combination I (#5.9) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 2040
atoms
average map value = 0.1315, steps = 44
shifted from previous position = 0.0687
rotated from previous position = 0.049 degrees
atoms outside contour = 1094, contour level = 0.12
Position of combination I (#5.9) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999961 -0.00084012 0.00026067 0.05161513
0.00084009 0.99999964 0.00009195 -0.01926858
-0.00026075 -0.00009173 0.99999996 0.08863745
Axis -0.10384751 0.29477993 0.94990552
Axis point 48.63618997 70.45852495 0.00000000
Rotation angle (degrees) 0.05067299
Shift along axis 0.07315711
> fitmap #5.9 inMap #1
Fit molecule combination I (#5.9) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 2040
atoms
average map value = 0.1316, steps = 44
shifted from previous position = 0.0315
rotated from previous position = 0.0352 degrees
atoms outside contour = 1092, contour level = 0.12
Position of combination I (#5.9) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999920 -0.00113650 0.00056357 0.02394769
0.00113670 0.99999929 -0.00035390 0.01892679
-0.00056316 0.00035454 0.99999978 0.03394522
Axis 0.26894495 0.42773579 0.86296622
Axis point -0.15097385 10.69949916 0.00000000
Rotation angle (degrees) 0.07546349
Shift along axis 0.04382986
> fitmap #5.9 inMap #1
Fit molecule combination I (#5.9) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 2040
atoms
average map value = 0.1316, steps = 40
shifted from previous position = 0.0119
rotated from previous position = 0.0308 degrees
atoms outside contour = 1092, contour level = 0.12
Position of combination I (#5.9) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999963 -0.00082526 0.00024786 0.04874493
0.00082527 0.99999966 -0.00004983 -0.00656040
-0.00024782 0.00005004 0.99999997 0.05611431
Axis 0.05785578 0.28714742 0.95613758
Axis point 26.96627744 55.22708835 0.00000000
Rotation angle (degrees) 0.04945332
Shift along axis 0.05458937
> fitmap #5.10 inMap #1
Fit molecule combination J (#5.10) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
atoms
average map value = 0.1493, steps = 36
shifted from previous position = 0.0393
rotated from previous position = 0.134 degrees
atoms outside contour = 923, contour level = 0.12
Position of combination J (#5.10) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999819 0.00166154 -0.00092908 -0.00713277
-0.00166274 0.99999778 -0.00129115 0.34406202
0.00092693 0.00129270 0.99999873 -0.18693657
Axis 0.56154909 -0.40336590 -0.72246700
Axis point 205.04636424 1.90303381 0.00000000
Rotation angle (degrees) 0.13181735
Shift along axis -0.00773279
> fitmap #5.10 inMap #1
Fit molecule combination J (#5.10) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
atoms
average map value = 0.1493, steps = 40
shifted from previous position = 0.0217
rotated from previous position = 0.019 degrees
atoms outside contour = 922, contour level = 0.12
Position of combination J (#5.10) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999835 0.00154939 -0.00094847 0.01674358
-0.00155091 0.99999751 -0.00160268 0.40239959
0.00094599 0.00160414 0.99999827 -0.22659577
Axis 0.66173441 -0.39092621 -0.63975329
Axis point 0.00000000 142.03118803 250.55130864
Rotation angle (degrees) 0.13883018
Shift along axis -0.00126335
> fitmap #5.10 inMap #1
Fit molecule combination J (#5.10) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
atoms
average map value = 0.1493, steps = 36
shifted from previous position = 0.012
rotated from previous position = 0.0286 degrees
atoms outside contour = 925, contour level = 0.12
Position of combination J (#5.10) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999903 0.00105214 -0.00091433 0.06974202
-0.00105363 0.99999813 -0.00162097 0.36514233
0.00091262 0.00162194 0.99999827 -0.22888569
Axis 0.75830821 -0.42720802 -0.49240428
Axis point 0.00000000 138.44792888 227.63123464
Rotation angle (degrees) 0.12251292
Shift along axis 0.00959851
> fitmap #5.10 inMap #1
Fit molecule combination J (#5.10) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
atoms
average map value = 0.1493, steps = 36
shifted from previous position = 0.0277
rotated from previous position = 0.0291 degrees
atoms outside contour = 923, contour level = 0.12
Position of combination J (#5.10) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999839 0.00153641 -0.00092896 0.00243568
-0.00153777 0.99999774 -0.00146641 0.36826985
0.00092671 0.00146784 0.99999849 -0.20713456
Axis 0.63275974 -0.40016827 -0.66293323
Axis point 237.27523914 -4.84214511 -0.00000000
Rotation angle (degrees) 0.13284707
Shift along axis -0.00851232
> fitmap #5.10 inMap #1
Fit molecule combination J (#5.10) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
atoms
average map value = 0.1493, steps = 40
shifted from previous position = 0.0234
rotated from previous position = 0.0281 degrees
atoms outside contour = 924, contour level = 0.12
Position of combination J (#5.10) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999903 0.00105566 -0.00090429 0.06559302
-0.00105707 0.99999822 -0.00156020 0.34868223
0.00090264 0.00156116 0.99999837 -0.22169675
Axis 0.74675711 -0.43229043 -0.50544911
Axis point 0.00000000 138.90664101 226.18273666
Rotation angle (degrees) 0.11974502
Shift along axis 0.01030649
> fitmap #5.10 inMap #1
Fit molecule combination J (#5.10) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
atoms
average map value = 0.1493, steps = 44
shifted from previous position = 0.0143
rotated from previous position = 0.0352 degrees
atoms outside contour = 921, contour level = 0.12
Position of combination J (#5.10) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999816 0.00147229 -0.00122574 0.08530676
-0.00147459 0.99999715 -0.00187657 0.44579723
0.00122298 0.00187837 0.99999749 -0.27889891
Axis 0.69993596 -0.45645173 -0.54931000
Axis point 0.00000000 146.04309260 239.63137413
Rotation angle (degrees) 0.15368705
Shift along axis 0.00942632
> fitmap #5.10 inMap #1
Fit molecule combination J (#5.10) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
atoms
average map value = 0.1493, steps = 44
shifted from previous position = 0.00747
rotated from previous position = 0.0507 degrees
atoms outside contour = 924, contour level = 0.12
Position of combination J (#5.10) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999939 0.00081745 -0.00074209 0.07007152
-0.00081859 0.99999850 -0.00152896 0.33138974
0.00074084 0.00152956 0.99999856 -0.20189867
Axis 0.81078383 -0.39310889 -0.43369918
Axis point 0.00000000 128.20656559 220.24269964
Rotation angle (degrees) 0.10806842
Shift along axis 0.01410389
> select subtract #5.9
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected
> select add #5.11
30675 atoms, 31237 bonds, 8 pseudobonds, 4031 residues, 23 models selected
> fitmap #5.11 inMap #1
Fit molecule combination K (#5.11) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1875
atoms
average map value = 0.3238, steps = 28
shifted from previous position = 0.0453
rotated from previous position = 0.123 degrees
atoms outside contour = 367, contour level = 0.12
Position of combination K (#5.11) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999748 -0.00152833 0.00164337 -0.01008541
0.00152881 0.99999879 -0.00029428 -0.19152746
-0.00164292 0.00029680 0.99999861 0.20115230
Axis 0.13056325 0.72590554 0.67528837
Axis point 124.28514747 0.00000000 5.96900842
Rotation angle (degrees) 0.12969387
Shift along axis -0.00451182
> fitmap #5.11 inMap #1
Fit molecule combination K (#5.11) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1875
atoms
average map value = 0.3238, steps = 40
shifted from previous position = 0.00321
rotated from previous position = 0.00947 degrees
atoms outside contour = 367, contour level = 0.12
Position of combination K (#5.11) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999774 -0.00137079 0.00162472 -0.02806499
0.00137120 0.99999903 -0.00024820 -0.17490401
-0.00162438 0.00025043 0.99999865 0.20537031
Axis 0.11648616 0.75902399 0.64055723
Axis point 128.18019069 0.00000000 17.13122081
Rotation angle (degrees) 0.12263099
Shift along axis -0.00447408
> fitmap #5.11 inMap #1
Fit molecule combination K (#5.11) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1875
atoms
average map value = 0.3239, steps = 40
shifted from previous position = 0.0209
rotated from previous position = 0.0226 degrees
atoms outside contour = 370, contour level = 0.12
Position of combination K (#5.11) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999799 -0.00140987 0.00142893 0.01172865
0.00141072 0.99999883 -0.00058874 -0.13906194
-0.00142809 0.00059076 0.99999881 0.14877759
Axis 0.28187764 0.68277302 0.67406676
Axis point 100.10427196 0.00000000 -6.36164152
Rotation angle (degrees) 0.11987536
Shift along axis 0.00864433
> fitmap #5.11 inMap #1
Fit molecule combination K (#5.11) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1875
atoms
average map value = 0.3238, steps = 40
shifted from previous position = 0.0268
rotated from previous position = 0.0264 degrees
atoms outside contour = 368, contour level = 0.12
Position of combination K (#5.11) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999770 -0.00138027 0.00164108 -0.03140531
0.00138057 0.99999903 -0.00018156 -0.18405076
-0.00164082 0.00018383 0.99999864 0.21127569
Axis 0.08489115 0.76247796 0.64142097
Axis point 131.67182525 0.00000000 18.93435366
Rotation angle (degrees) 0.12330794
Shift along axis -0.00748403
> fitmap #5.12 inMap #1
Fit molecule combination L (#5.12) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1591
atoms
average map value = 0.3602, steps = 44
shifted from previous position = 0.0353
rotated from previous position = 0.213 degrees
atoms outside contour = 249, contour level = 0.12
Position of combination L (#5.12) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999687 0.00250035 0.00010264 -0.28183793
-0.00250062 0.99999324 0.00269515 -0.06305584
-0.00009590 -0.00269540 0.99999636 0.36821761
Axis -0.73283387 0.02699156 -0.67987203
Axis point 0.00000000 125.10099524 23.25403728
Rotation angle (degrees) 0.21072752
Shift along axis -0.04550245
> fitmap #5.12 inMap #1
Fit molecule combination L (#5.12) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1591
atoms
average map value = 0.3595, steps = 28
shifted from previous position = 0.0508
rotated from previous position = 0.076 degrees
atoms outside contour = 246, contour level = 0.12
Position of combination L (#5.12) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999913 0.00130576 -0.00016553 -0.04703377
-0.00130523 0.99999400 0.00320756 -0.33473859
0.00016971 -0.00320734 0.99999484 0.37418109
Axis -0.92513453 -0.04834680 -0.37654838
Axis point 0.00000000 106.96072544 105.78320749
Rotation angle (degrees) 0.19864529
Shift along axis -0.08120117
> fitmap #5.12 inMap #1
Fit molecule combination L (#5.12) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1591
atoms
average map value = 0.3601, steps = 44
shifted from previous position = 0.0456
rotated from previous position = 0.0689 degrees
atoms outside contour = 248, contour level = 0.12
Position of combination L (#5.12) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999715 0.00238710 0.00008144 -0.25981759
-0.00238731 0.99999338 0.00274487 -0.08927229
-0.00007489 -0.00274506 0.99999623 0.36934257
Axis -0.75439329 0.02148240 -0.65607109
Axis point 0.00000000 122.97710941 32.44231473
Rotation angle (degrees) 0.20847903
Shift along axis -0.04822812
> fitmap #5.12 inMap #1
Fit molecule combination L (#5.12) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1591
atoms
average map value = 0.3597, steps = 28
shifted from previous position = 0.0365
rotated from previous position = 0.00451 degrees
atoms outside contour = 246, contour level = 0.12
Position of combination L (#5.12) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999719 0.00236736 0.00010714 -0.23491782
-0.00236765 0.99999323 0.00281670 -0.08235789
-0.00010047 -0.00281694 0.99999603 0.38869340
Axis -0.76521655 0.02820002 -0.64315502
Axis point 0.00000000 121.37913964 28.80453364
Rotation angle (degrees) 0.21091071
Shift along axis -0.07254960
> select subtract #5.11
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected
> select add #5.13
30368 atoms, 30932 bonds, 7 pseudobonds, 3977 residues, 22 models selected
> fitmap #5.13 inMap #1
Fit molecule combination M (#5.13) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1568
atoms
average map value = 0.3566, steps = 40
shifted from previous position = 0.0533
rotated from previous position = 0.0795 degrees
atoms outside contour = 240, contour level = 0.12
Position of combination M (#5.13) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999988 -0.00028641 0.00039926 -0.05095853
0.00028696 0.99999901 -0.00137882 0.24592661
-0.00039887 0.00137893 0.99999897 -0.10924343
Axis 0.94197644 0.27262240 0.19585051
Axis point 0.00000000 79.02286280 178.76901811
Rotation angle (degrees) 0.08387004
Shift along axis -0.00235201
> fitmap #5.13 inMap #1
Fit molecule combination M (#5.13) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1568
atoms
average map value = 0.3564, steps = 44
shifted from previous position = 0.0343
rotated from previous position = 0.0313 degrees
atoms outside contour = 244, contour level = 0.12
Position of combination M (#5.13) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999954 -0.00069240 0.00066856 -0.06555419
0.00069315 0.99999912 -0.00113130 0.15249805
-0.00066778 0.00113176 0.99999914 -0.01044014
Axis 0.76171091 0.44978892 0.46635439
Axis point -0.00000000 15.00551215 129.30442704
Rotation angle (degrees) 0.08511380
Shift along axis 0.01378978
> fitmap #5.13 inMap #1
Fit molecule combination M (#5.13) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1568
atoms
average map value = 0.3564, steps = 40
shifted from previous position = 0.00978
rotated from previous position = 0.0757 degrees
atoms outside contour = 241, contour level = 0.12
Position of combination M (#5.13) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999998 0.00010166 0.00014603 -0.06274524
-0.00010136 0.99999789 -0.00204999 0.45859912
-0.00014624 0.00204997 0.99999789 -0.22339911
Axis 0.99625436 0.07101873 -0.04933136
Axis point 0.00000000 109.66288383 224.25087995
Rotation angle (degrees) 0.11789697
Shift along axis -0.01892051
> fitmap #5.13 inMap #1
Fit molecule combination M (#5.13) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1568
atoms
average map value = 0.3566, steps = 40
shifted from previous position = 0.0232
rotated from previous position = 0.0632 degrees
atoms outside contour = 240, contour level = 0.12
Position of combination M (#5.13) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999980 -0.00042208 0.00046582 -0.04647305
0.00042261 0.99999927 -0.00113340 0.17580375
-0.00046534 0.00113360 0.99999925 -0.06468881
Axis 0.87452453 0.35920417 0.32585152
Axis point 0.00000000 57.57817649 154.62186356
Rotation angle (degrees) 0.07426286
Shift along axis 0.00142866
> select add #5.14
31917 atoms, 32512 bonds, 7 pseudobonds, 4177 residues, 23 models selected
> select subtract #5.13
30349 atoms, 30911 bonds, 7 pseudobonds, 3980 residues, 22 models selected
> fitmap #5.14 inMap #1
Fit molecule combination N (#5.14) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1549
atoms
average map value = 0.3527, steps = 36
shifted from previous position = 0.0221
rotated from previous position = 0.0564 degrees
atoms outside contour = 239, contour level = 0.12
Position of combination N (#5.14) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999963 -0.00062065 -0.00059564 0.28083927
0.00062053 0.99999979 -0.00019455 -0.02880770
0.00059576 0.00019418 0.99999980 -0.10806917
Axis 0.22038930 -0.67546335 0.70368872
Axis point 40.80251932 450.58438382 -0.00000000
Rotation angle (degrees) 0.05052984
Shift along axis 0.00530546
> fitmap #5.14 inMap #1
Fit molecule combination N (#5.14) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1549
atoms
average map value = 0.3527, steps = 44
shifted from previous position = 0.00511
rotated from previous position = 0.00656 degrees
atoms outside contour = 240, contour level = 0.12
Position of combination N (#5.14) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999963 -0.00054927 -0.00066856 0.28715744
0.00054911 0.99999982 -0.00024659 -0.01190953
0.00066869 0.00024622 0.99999975 -0.12342747
Axis 0.27388844 -0.74319717 0.61044499
Axis point 195.83786737 0.00000000 424.43043774
Rotation angle (degrees) 0.05154658
Shift along axis 0.01215455
> fitmap #5.14 inMap #1
Fit molecule combination N (#5.14) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1549
atoms
average map value = 0.353, steps = 44
shifted from previous position = 0.0391
rotated from previous position = 0.0304 degrees
atoms outside contour = 237, contour level = 0.12
Position of combination N (#5.14) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999949 -0.00015855 -0.00099735 0.26188873
0.00015845 0.99999998 -0.00010018 0.02528157
0.00099737 0.00010002 0.99999950 -0.16463257
Axis 0.09864097 -0.98279005 0.15618473
Axis point 161.32791818 0.00000000 264.94632757
Rotation angle (degrees) 0.05814537
Shift along axis -0.02472661
> select add #5.15
31992 atoms, 32584 bonds, 7 pseudobonds, 4192 residues, 23 models selected
> select subtract #5.14
30443 atoms, 31004 bonds, 7 pseudobonds, 3992 residues, 22 models selected
> fitmap #5.15 inMap #1
Fit molecule combination O (#5.15) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1643
atoms
average map value = 0.3446, steps = 44
shifted from previous position = 0.00819
rotated from previous position = 0.0709 degrees
atoms outside contour = 276, contour level = 0.12
Position of combination O (#5.15) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999941 0.00069383 -0.00084011 0.05801410
-0.00069367 0.99999974 0.00019410 0.06402063
0.00084024 -0.00019351 0.99999963 -0.06057621
Axis -0.17512365 -0.75918509 -0.62687296
Axis point 87.63259557 0.00000000 64.65991641
Rotation angle (degrees) 0.06340815
Shift along axis -0.02078955
> fitmap #5.15 inMap #1
Fit molecule combination O (#5.15) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1643
atoms
average map value = 0.3447, steps = 44
shifted from previous position = 0.00831
rotated from previous position = 0.0116 degrees
atoms outside contour = 276, contour level = 0.12
Position of combination O (#5.15) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999955 0.00053427 -0.00077944 0.07109588
-0.00053420 0.99999985 0.00008389 0.05712097
0.00077949 -0.00008348 0.99999969 -0.07383059
Axis -0.08821310 -0.82163809 -0.56314234
Axis point 103.15240509 0.00000000 89.83875823
Rotation angle (degrees) 0.05435490
Shift along axis -0.01162722
> fitmap #5.15 inMap #1
Fit molecule combination O (#5.15) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1643
atoms
average map value = 0.3445, steps = 40
shifted from previous position = 0.0332
rotated from previous position = 0.0275 degrees
atoms outside contour = 276, contour level = 0.12
Position of combination O (#5.15) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999938 0.00030380 -0.00107167 0.15165450
-0.00030338 0.99999988 0.00038671 -0.01129547
0.00107179 -0.00038638 0.99999935 -0.08415800
Axis -0.32783924 -0.90896845 -0.25748358
Axis point 82.87528448 0.00000000 136.02446357
Rotation angle (degrees) 0.06755528
Shift along axis -0.01778177
> fitmap #5.15 inMap #1
Fit molecule combination O (#5.15) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1643
atoms
average map value = 0.3444, steps = 44
shifted from previous position = 0.00823
rotated from previous position = 0.0172 degrees
atoms outside contour = 276, contour level = 0.12
Position of combination O (#5.15) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999932 0.00026762 -0.00113506 0.16379104
-0.00026685 0.99999973 0.00067749 -0.06660641
0.00113524 -0.00067718 0.99999913 -0.04656856
Axis -0.50224543 -0.84171470 -0.19815623
Axis point 44.08870541 0.00000000 136.76597378
Rotation angle (degrees) 0.07726979
Shift along axis -0.01697186
> fitmap #5.15 inMap #1
Fit molecule combination O (#5.15) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1643
atoms
average map value = 0.3446, steps = 40
shifted from previous position = 0.0275
rotated from previous position = 0.0521 degrees
atoms outside contour = 278, contour level = 0.12
Position of combination O (#5.15) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999940 -0.00015748 -0.00108386 0.24506924
0.00015735 0.99999998 -0.00012525 0.01471248
0.00108388 0.00012508 0.99999940 -0.16060208
Axis 0.11353922 -0.98321782 0.14279905
Axis point 147.03700734 0.00000000 227.03005343
Rotation angle (degrees) 0.06316099
Shift along axis -0.00957443
> fitmap #5.16 inMap #1
Fit molecule combination P (#5.16) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1623
atoms
average map value = 0.3541, steps = 28
shifted from previous position = 0.0553
rotated from previous position = 0.22 degrees
atoms outside contour = 245, contour level = 0.12
Position of combination P (#5.16) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999412 -0.00176197 -0.00294228 0.70976592
0.00176604 0.99999749 0.00137884 -0.42550079
0.00293984 -0.00138402 0.99999472 -0.10487320
Axis -0.37363421 -0.79546522 0.47710855
Axis point 39.88344742 0.00000000 244.10192655
Rotation angle (degrees) 0.21183910
Shift along axis 0.02324236
> fitmap #5.16 inMap #1
Fit molecule combination P (#5.16) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1623
atoms
average map value = 0.3542, steps = 44
shifted from previous position = 0.043
rotated from previous position = 0.0795 degrees
atoms outside contour = 243, contour level = 0.12
Position of combination P (#5.16) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999145 -0.00251228 -0.00328571 0.90822716
0.00252047 0.99999372 0.00249112 -0.68641510
0.00327943 -0.00249938 0.99999150 0.00344362
Axis -0.51656151 -0.67955118 0.52093608
Axis point -0.47800571 -0.00000000 276.27622397
Rotation angle (degrees) 0.27676795
Shift along axis -0.00090708
> fitmap #5.17 inMap #1
Fit molecule combination Q (#5.17) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1455
atoms
average map value = 0.3481, steps = 28
shifted from previous position = 0.0376
rotated from previous position = 0.173 degrees
atoms outside contour = 229, contour level = 0.12
Position of combination Q (#5.17) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999530 -0.00164434 0.00258785 -0.04900956
0.00164636 0.99999834 -0.00077865 -0.13759945
-0.00258657 0.00078291 0.99999635 0.26805165
Axis 0.24677605 0.81772015 0.52003398
Axis point 100.63091118 0.00000000 20.53086550
Rotation angle (degrees) 0.18128017
Shift along axis 0.01478374
> fitmap #5.17 inMap #1
Fit molecule combination Q (#5.17) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1455
atoms
average map value = 0.3483, steps = 44
shifted from previous position = 0.0387
rotated from previous position = 0.0196 degrees
atoms outside contour = 228, contour level = 0.12
Position of combination Q (#5.17) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
0.99999514 -0.00138869 0.00279063 -0.14613544
0.00139116 0.99999864 -0.00088082 -0.07767017
-0.00278940 0.00088469 0.99999572 0.29989604
Axis 0.27248448 0.86120869 0.42903589
Axis point 104.05163599 0.00000000 54.69150167
Rotation angle (degrees) 0.18561863
Shift along axis 0.02195630
> select subtract #5.15
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected
> rename #5 tophalf
> hide #!5 models
> hide #!1 models
> show #!2 models
> show #!4 models
> hide #!4 models
> hide #!2 models
> show #!5 models
> show #!1 models
> hide #!1 models
Drag select of 9 residues
Drag select of 5 residues
> select clear
Drag select of 1 residues
> show #!1 models
> select #1
3 models selected
> combine #5
> hide #!5 models
> color zone #1 near #6 distance 11.3
> rename #6 bottomhalf
Drag select of 1 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc ,
15 residues
Drag select of 1 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
> select add #6
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 4 models selected
> select subtract #1
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 2 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #6,1,-0.00024274,0.001022,53.633,0.00024,1,0.002683,92.502,-0.0010227,-0.0026827,1,67.904
> show #!5 models
> hide #!5 models
> ui mousemode right "rotate selected models"
> view matrix models
> #6,-0.89506,0.013162,-0.44574,360.56,-0.088842,-0.98479,0.14932,334.72,-0.437,0.17325,0.88262,118.68
> view matrix models
> #6,-0.69586,0.46278,-0.5492,295.96,-0.59135,-0.80315,0.07249,385.88,-0.40754,0.37521,0.83254,97.62
> view matrix models
> #6,-0.8143,0.54871,-0.18929,237.12,-0.57946,-0.74955,0.32001,334.73,0.033715,0.37027,0.92831,27.816
> view matrix models
> #6,-0.98346,0.012626,0.18068,263.18,-0.084627,-0.91401,-0.39676,419.41,0.16014,-0.40549,0.89996,117.6
> view matrix models
> #6,-0.99662,0.015971,-0.080567,309.5,-0.016608,-0.99984,0.0072342,352.4,-0.080438,0.0085478,0.99672,76.717
> ui mousemode right "translate selected models"
> view matrix models
> #6,-0.99662,0.015971,-0.080567,311.93,-0.016608,-0.99984,0.0072342,339.85,-0.080438,0.0085478,0.99672,5.3622
> view matrix models
> #6,-0.99662,0.015971,-0.080567,326.99,-0.016608,-0.99984,0.0072342,317.92,-0.080438,0.0085478,0.99672,9.669
> view matrix models
> #6,-0.99662,0.015971,-0.080567,325.99,-0.016608,-0.99984,0.0072342,318.16,-0.080438,0.0085478,0.99672,7.4382
> fitmap #6 inMap #1
Fit molecule bottomhalf (#6) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
atoms
average map value = 0.3015, steps = 60
shifted from previous position = 2.67
rotated from previous position = 4.7 degrees
atoms outside contour = 6690, contour level = 0.12
Position of bottomhalf (#6) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
-0.99999962 0.00010436 -0.00086658 316.89879083
-0.00010207 -0.99999651 -0.00264062 317.17295730
-0.00086685 -0.00264053 0.99999614 0.34592174
Axis 0.00043670 0.00132253 -0.99999903
Axis point 158.45765544 158.57852998 0.00000000
Rotation angle (degrees) 179.99408605
Shift along axis 0.21193985
> fitmap #6 inMap #1
Fit molecule bottomhalf (#6) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
atoms
average map value = 0.3015, steps = 24
shifted from previous position = 0.0193
rotated from previous position = 0.00595 degrees
atoms outside contour = 6683, contour level = 0.12
Position of bottomhalf (#6) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
-0.99999953 0.00008836 -0.00096838 316.91276632
-0.00008579 -0.99999648 -0.00265353 317.16248238
-0.00096861 -0.00265344 0.99999601 0.37508957
Axis 0.00048821 0.00132940 -0.99999900
Axis point 158.46337912 158.57459155 0.00000000
Rotation angle (degrees) 179.99501085
Shift along axis 0.20126680
> fitmap #6 inMap #1
Fit molecule bottomhalf (#6) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
atoms
average map value = 0.3013, steps = 28
shifted from previous position = 0.048
rotated from previous position = 0.0237 degrees
atoms outside contour = 6693, contour level = 0.12
Position of bottomhalf (#6) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
-0.99999943 0.00011397 -0.00106918 316.96276612
-0.00011156 -0.99999746 -0.00225304 317.12389681
-0.00106944 -0.00225292 0.99999689 0.31801038
Axis 0.00053772 0.00112854 -0.99999922
Axis point 158.49040838 158.55319257 0.00000000
Rotation angle (degrees) 179.99353926
Shift along axis 0.21031326
> fitmap #6 inMap #1
Fit molecule bottomhalf (#6) to map
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
atoms
average map value = 0.3014, steps = 40
shifted from previous position = 0.0158
rotated from previous position = 0.00717 degrees
atoms outside contour = 6699, contour level = 0.12
Position of bottomhalf (#6) relative to
cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates:
Matrix rotation and translation
-0.99999945 0.00006741 -0.00104627 316.95170540
-0.00006493 -0.99999720 -0.00236680 317.12915113
-0.00104642 -0.00236673 0.99999666 0.33203260
Axis 0.00052839 0.00118688 -0.99999916
Axis point 158.48118629 158.55952967 0.00000000
Rotation angle (degrees) 179.99620891
Shift along axis 0.21183479
> show #!5 models
> split #66
> split #6
Split bottomhalf (#6) into 17 models
Chain information for bottomhalf A #6.1
---
Chain | Description
A | No description available
Chain information for bottomhalf B #6.2
---
Chain | Description
B | No description available
Chain information for bottomhalf C #6.3
---
Chain | Description
C | No description available
Chain information for bottomhalf D #6.4
---
Chain | Description
D | No description available
Chain information for bottomhalf E #6.5
---
Chain | Description
E | No description available
Chain information for bottomhalf F #6.6
---
Chain | Description
F | No description available
Chain information for bottomhalf G #6.7
---
Chain | Description
G | No description available
Chain information for bottomhalf H #6.8
---
Chain | Description
H | No description available
Chain information for bottomhalf I #6.9
---
Chain | Description
I | No description available
Chain information for bottomhalf J #6.10
---
Chain | Description
J | No description available
Chain information for bottomhalf K #6.11
---
Chain | Description
K | No description available
Chain information for bottomhalf L #6.12
---
Chain | Description
L | No description available
Chain information for bottomhalf M #6.13
---
Chain | Description
M | No description available
Chain information for bottomhalf N #6.14
---
Chain | Description
N | No description available
Chain information for bottomhalf O #6.15
---
Chain | Description
O | No description available
Chain information for bottomhalf P #6.16
---
Chain | Description
P | No description available
Chain information for bottomhalf Q #6.17
---
Chain | Description
Q | No description available
> select add #5
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 22 models selected
> select add #6
57600 atoms, 58662 bonds, 14 pseudobonds, 7560 residues, 44 models selected
> hide #!1 models
> combine selected
Expected a keyword
> combine sel
Remapping chain ID 'A' in bottomhalf A #6.1 to 'R'
Remapping chain ID 'B' in bottomhalf B #6.2 to 'S'
Remapping chain ID 'C' in bottomhalf C #6.3 to 'T'
Remapping chain ID 'D' in bottomhalf D #6.4 to 'U'
Remapping chain ID 'E' in bottomhalf E #6.5 to 'V'
Remapping chain ID 'F' in bottomhalf F #6.6 to 'W'
Remapping chain ID 'G' in bottomhalf G #6.7 to 'X'
Remapping chain ID 'H' in bottomhalf H #6.8 to 'Y'
Remapping chain ID 'I' in bottomhalf I #6.9 to 'Z'
Remapping chain ID 'J' in bottomhalf J #6.10 to 'a'
Remapping chain ID 'K' in bottomhalf K #6.11 to 'b'
Remapping chain ID 'L' in bottomhalf L #6.12 to 'c'
Remapping chain ID 'M' in bottomhalf M #6.13 to 'd'
Remapping chain ID 'N' in bottomhalf N #6.14 to 'e'
Remapping chain ID 'O' in bottomhalf O #6.15 to 'f'
Remapping chain ID 'P' in bottomhalf P #6.16 to 'g'
Remapping chain ID 'Q' in bottomhalf Q #6.17 to 'h'
> hide #!5 models
> hide #!6 models
> select subtract #6
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 22 models selected
> select subtract #5
Nothing selected
> show #!1 models
> color zone #1 near #7 distance 11.3
> rename #7 Structure_20SCP_preholo_mature_beta-
> subunits_docked_real_space_refined_001-coot-1.pdb
> close #2
> show #!3 models
> hide #!3 models
> hide #!1 models
> hide #!7 models
> show #!3 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!3 models
> close #4
> show #!5 models
> show #!6 models
> hide #!6 models
> hide #!5 models
> show #!7 models
> show #!1 models
> ui tool show "Side View"
> close #3
> rename #7 id #2
> split #2
Split Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb (#2) into 34 models
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb A #2.1
---
Chain | Description
A | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb B #2.2
---
Chain | Description
B | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb C #2.3
---
Chain | Description
C | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb D #2.4
---
Chain | Description
D | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb E #2.5
---
Chain | Description
E | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb F #2.6
---
Chain | Description
F | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb G #2.7
---
Chain | Description
G | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb H #2.8
---
Chain | Description
H | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb I #2.9
---
Chain | Description
I | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb J #2.10
---
Chain | Description
J | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb K #2.11
---
Chain | Description
K | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb L #2.12
---
Chain | Description
L | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb M #2.13
---
Chain | Description
M | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb N #2.14
---
Chain | Description
N | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb O #2.15
---
Chain | Description
O | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb P #2.16
---
Chain | Description
P | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb Q #2.17
---
Chain | Description
Q | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb R #2.18
---
Chain | Description
R | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb S #2.19
---
Chain | Description
S | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb T #2.20
---
Chain | Description
T | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb U #2.21
---
Chain | Description
U | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb V #2.22
---
Chain | Description
V | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb W #2.23
---
Chain | Description
W | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb X #2.24
---
Chain | Description
X | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb Y #2.25
---
Chain | Description
Y | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb Z #2.26
---
Chain | Description
Z | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb a #2.27
---
Chain | Description
a | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb b #2.28
---
Chain | Description
b | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb c #2.29
---
Chain | Description
c | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb d #2.30
---
Chain | Description
d | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb e #2.31
---
Chain | Description
e | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb f #2.32
---
Chain | Description
f | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb g #2.33
---
Chain | Description
g | No description available
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1.pdb h #2.34
---
Chain | Description
h | No description available
> combine #2
> rename #5 id #4
> 5
Unknown command: 5
> hide #!1 models
> hide #2.18 models
> hide #2.19 models
> hide #2.20 models
> hide #!2.21 models
> show #!2.21 models
> hide #2.22 models
> hide #2.23 models
> show #2.22 models
> hide #!2.21 models
> hide #2.24 models
> show #!2.21 models
> hide #!3 models
> hide #!2.21 models
> hide #2.22 models
> hide #2.25 models
> hide #!2.26 models
> hide #!2.27 models
> hide #!2.28 models
> hide #2.29 models
> hide #2.30 models
> hide #2.31 models
> hide #2.32 models
> hide #2.33 models
> hide #2.34 models
> show #!4 models
> select add #4
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 22 models selected
> select subtract #4
Nothing selected
> select add #4
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 22 models selected
> select subtract #4
Nothing selected
> select add #4
28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 22 models selected
> select subtract #4
Nothing selected
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> hide #!4 models
> close #4
> close #6
> show #!1 models
> transparency 50
> hide #!1 models
> select #2/H:37-30
Nothing selected
> select #2/H:30-35
51 atoms, 51 bonds, 6 residues, 1 model selected
> show #!1 models
> select #2/H:30-34
40 atoms, 39 bonds, 5 residues, 1 model selected
> volume #1 level 0.08068
> volume #1 level 0.1043
> select #2/H:30-35
51 atoms, 51 bonds, 6 residues, 1 model selected
> view sel
> delete sel
> select #2/Y:30-35
51 atoms, 51 bonds, 6 residues, 1 model selected
> view sel
> view matrix models
> #2.25,1,-0.00024274,0.001022,0.074756,0.00024,1,0.002683,-0.28172,-0.0010227,-0.0026827,1,0.59998
> show #2.25 models
> delete sel
> hide #2.25 models
> hide #!2 models
> show #!2 models
> show #2.18 models
> show #2.19 models
> show #2.20 models
> show #!2.21 models
> show #2.22 models
> show #2.23 models
> show #2.25 models
> show #2.24 models
> show #!2.26 models
> show #2.34 models
> show #2.33 models
> show #2.32 models
> hide #2.32 models
> show #2.31 models
> show #2.30 models
> show #2.32 models
> show #2.29 models
> show #!2.28 models
> show #!2.27 models
> close #3
> view
> volume #1 level 0.07911
> volume #1 level 0.06967
> volume #1 level 0.01463
> volume #1 level 0.02
> volume #1 level 0.05
> select #2/V:243-247
35 atoms, 35 bonds, 5 residues, 1 model selected
> delete sel
> select #2/E:243-247
35 atoms, 35 bonds, 5 residues, 1 model selected
> view
> select up
112 atoms, 113 bonds, 14 residues, 1 model selected
> select up
1909 atoms, 1946 bonds, 247 residues, 1 model selected
> select #2/E:243-247
35 atoms, 35 bonds, 5 residues, 1 model selected
> delete sel
> volume #1 level 0.09718
> hide #!1 models
> select #2/C:236-238
27 atoms, 26 bonds, 3 residues, 1 model selected
> show #!1 models
> select #2/C:237-238
18 atoms, 17 bonds, 2 residues, 1 model selected
> delete sel
> select #2/T:237-238
18 atoms, 17 bonds, 2 residues, 1 model selected
> delete Sel
Missing or invalid "atoms" argument: invalid atoms specifier
> delete sel
> help help:user/tools/sideview.html
> volume #1 level 0.08774
> volume #1 level 0.06101
> select #2/U:128-129
13 atoms, 12 bonds, 2 residues, 1 model selected
> delete sel
> select #2/D:128-129
13 atoms, 12 bonds, 2 residues, 1 model selected
> delete sel
> volume #1 level 0.05315
> volume #1 level 0.04056
> select #2/L:2
6 atoms, 5 bonds, 1 residue, 1 model selected
> delete sel
> select #2/c:2
12 atoms, 10 bonds, 2 residues, 2 models selected
> view sel
> hide #!1 models
> select #2/c:2
12 atoms, 10 bonds, 2 residues, 2 models selected
> view sel
> delete sel
> select add #2
57348 atoms, 58406 bonds, 14 pseudobonds, 7527 residues, 43 models selected
> hide #!2 models
> select subtract #2
Nothing selected
> show #!1 models
> combine #2
> color zone #1 near #3 distance 11.3
> view
> volume #1 level 0.08
> color zone #1 near #3 distance 11.3
> volume #1 level 0.095
> color zone #1 near #3 distance 11.3
> ui dockable false "Side View"
Window position QRect(1372,966 1188x266) outside any known screen, using
primary screen
> hide #!1 models
> select #3/H:3-28
Nothing selected
> select #3/b:3-28
186 atoms, 190 bonds, 26 residues, 1 model selected
> color red
> undo
> color sel orange
> select #3/H:3-28
Nothing selected
> color sel orange
> show #!1 models
> color zone #1 near #3 distance 11.3
> save "/Users/fadlof/Downloads/20SCP_preholo/Coot
> /Structure_20SCP_preholo_mature_beta-
> subunits_docked_real_space_refined_001-coot-1-1.pdb" models #3
> open "/Users/fadlof/Downloads/20SCP_preholo/Coot
> /Structure_20SCP_preholo_mature_beta-
> subunits_docked_real_space_refined_001-coot-1-1.pdb"
Chain information for Structure_20SCP_preholo_mature_beta-
subunits_docked_real_space_refined_001-coot-1-1.pdb #4
---
Chain | Description
A R | No description available
B S | No description available
C T | No description available
D U | No description available
E V | No description available
F W | No description available
G X | No description available
H Y | No description available
I Z | No description available
J a | No description available
K b | No description available
L c | No description available
M d | No description available
N e | No description available
O f | No description available
P g | No description available
Q h | No description available
> close #4
> rename #2 Structure_20SCP_preholo_mature_beta-
> subunits_docked_real_space_refined_001-coot-1-1.pdb
> save
> /Users/fadlof/Downloads/20SCP_preholo/ChimeraX_scessions/Structure_20SCP_preholo_model_building.cxs
> includeMaps true
——— End of log from Thu Sep 21 14:08:58 2023 ———
opened ChimeraX session
> rename #1 id #4
> rename #2 id #1
> rename #3 id #2
> rename #4 id #3
> color #1.8 #fe9000ff
> close #2
> color #1.9 #f4d1d1ff
> color #1.10 #d95728ff
> color #1.25 #fe9000ff
> color #1.26 #f4d1d1ff
> color #1.27 #d95728ff
> combine #1
> color zone #3 near #2 distance 11.3
> lighting soft
> open
> /Users/fadlof/Downloads/Maps_preholo20SCP/cryosparc_P109_J368_map_sharp.mrc
Opened cryosparc_P109_J368_map_sharp.mrc as #4, grid size 168,168,168, pixel
1.88, shown at level 0.119, step 1, values float32
> close #4
> save
> /Users/fadlof/Downloads/ModelBuilding/ModelBuilding_preholo-20SCP/ChimeraX_scessions/Structure_20SCP_preholo_model_building.cxs
> includeMaps true
——— End of log from Mon Oct 2 19:49:22 2023 ———
opened ChimeraX session
> open
> /Users/fadlof/Downloads/ModelBuilding/ModelBuilding_preholo-20SCP/Maps/cryosparc_P109_J413_map_sharp.mrc
Opened cryosparc_P109_J413_map_sharp.mrc as #4, grid size 168,168,168, pixel
1.88, shown at level 0.126, step 1, values float32
> open
> /Users/fadlof/Downloads/ModelBuilding/ModelBuilding_preholo-20SCP/PDBs/Structure_20SCP_preholo_real_space_refined_002.pdb
Chain information for Structure_20SCP_preholo_real_space_refined_002.pdb #5
---
Chain | Description
A R | No description available
B S | No description available
C | No description available
D U | No description available
E V | No description available
F W | No description available
G X | No description available
H Y | No description available
I Z | No description available
J a | No description available
K b | No description available
L c | No description available
M d | No description available
N e | No description available
O f | No description available
P g | No description available
Q h | No description available
T | No description available
> style #!2,5 stick
Changed 114696 atom styles
> show #!2,5 cartoons
> hide #!2,5 cartoons
> show #!2,5 cartoons
> show #!2,5 atoms
> hide #!2,5 atoms
> show #!2,5 atoms
> hide #!2,5 atoms
> hide #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!2 models
> show #!4 models
> hide #!4 models
> show #!3 models
> hide #!3 models
> show #!2 models
> show #!1 models
> hide #!2 models
> hide #!1 models
> show #!4 models
> rename #5 Structure_20SCP_preholo.pdb
> select add #5
57348 atoms, 58406 bonds, 14 pseudobonds, 7527 residues, 2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.86813,0.49629,-0.0071418,-56.488,-0.17851,0.32562,0.9285,-24.514,0.46313,-0.80478,0.37127,162.18
> view matrix models
> #5,0.78294,0.61669,0.081857,-77.362,0.48249,-0.68501,0.54587,96.626,0.3927,-0.38788,-0.83386,314.45
> view matrix models
> #5,0.82355,0.56686,0.020964,-65.435,0.56512,-0.81669,-0.11689,218.31,-0.049138,0.10811,-0.99292,333.22
> ui tool show "Fit in Map"
> fitmap #5 inMap #4
Fit molecule Structure_20SCP_preholo.pdb (#5) to map
cryosparc_P109_J413_map_sharp.mrc (#4) using 57348 atoms
average map value = 0.2695, steps = 80
shifted from previous position = 0.866
rotated from previous position = 8.2 degrees
atoms outside contour = 16986, contour level = 0.12615
Position of Structure_20SCP_preholo.pdb (#5) relative to
cryosparc_P109_J413_map_sharp.mrc (#4) coordinates:
Matrix rotation and translation
0.86564083 0.50066553 0.00006788 -58.01343851
0.50066553 -0.86564082 -0.00007881 216.20260911
0.00001930 0.00010221 -1.00000000 344.56156495
Axis 0.96582539 0.25919359 0.00001009
Axis point 0.00000000 115.87733080 172.28632961
Rotation angle (degrees) 179.99463081
Shift along axis 0.01095426
> select subtract #5
Nothing selected
> color zone #4 near #5 distance 11.3
> close #1
> close #2
> close #3
> split #5
Split Structure_20SCP_preholo.pdb (#5) into 34 models
Chain information for Structure_20SCP_preholo.pdb A #5.1
---
Chain | Description
A | No description available
Chain information for Structure_20SCP_preholo.pdb B #5.2
---
Chain | Description
B | No description available
Chain information for Structure_20SCP_preholo.pdb C #5.3
---
Chain | Description
C | No description available
Chain information for Structure_20SCP_preholo.pdb D #5.4
---
Chain | Description
D | No description available
Chain information for Structure_20SCP_preholo.pdb E #5.5
---
Chain | Description
E | No description available
Chain information for Structure_20SCP_preholo.pdb F #5.6
---
Chain | Description
F | No description available
Chain information for Structure_20SCP_preholo.pdb G #5.7
---
Chain | Description
G | No description available
Chain information for Structure_20SCP_preholo.pdb H #5.8
---
Chain | Description
H | No description available
Chain information for Structure_20SCP_preholo.pdb I #5.9
---
Chain | Description
I | No description available
Chain information for Structure_20SCP_preholo.pdb J #5.10
---
Chain | Description
J | No description available
Chain information for Structure_20SCP_preholo.pdb K #5.11
---
Chain | Description
K | No description available
Chain information for Structure_20SCP_preholo.pdb L #5.12
---
Chain | Description
L | No description available
Chain information for Structure_20SCP_preholo.pdb M #5.13
---
Chain | Description
M | No description available
Chain information for Structure_20SCP_preholo.pdb N #5.14
---
Chain | Description
N | No description available
Chain information for Structure_20SCP_preholo.pdb O #5.15
---
Chain | Description
O | No description available
Chain information for Structure_20SCP_preholo.pdb P #5.16
---
Chain | Description
P | No description available
Chain information for Structure_20SCP_preholo.pdb Q #5.17
---
Chain | Description
Q | No description available
Chain information for Structure_20SCP_preholo.pdb R #5.18
---
Chain | Description
R | No description available
Chain information for Structure_20SCP_preholo.pdb S #5.19
---
Chain | Description
S | No description available
Chain information for Structure_20SCP_preholo.pdb T #5.20
---
Chain | Description
T | No description available
Chain information for Structure_20SCP_preholo.pdb U #5.21
---
Chain | Description
U | No description available
Chain information for Structure_20SCP_preholo.pdb V #5.22
---
Chain | Description
V | No description available
Chain information for Structure_20SCP_preholo.pdb W #5.23
---
Chain | Description
W | No description available
Chain information for Structure_20SCP_preholo.pdb X #5.24
---
Chain | Description
X | No description available
Chain information for Structure_20SCP_preholo.pdb Y #5.25
---
Chain | Description
Y | No description available
Chain information for Structure_20SCP_preholo.pdb Z #5.26
---
Chain | Description
Z | No description available
Chain information for Structure_20SCP_preholo.pdb a #5.27
---
Chain | Description
a | No description available
Chain information for Structure_20SCP_preholo.pdb b #5.28
---
Chain | Description
b | No description available
Chain information for Structure_20SCP_preholo.pdb c #5.29
---
Chain | Description
c | No description available
Chain information for Structure_20SCP_preholo.pdb d #5.30
---
Chain | Description
d | No description available
Chain information for Structure_20SCP_preholo.pdb e #5.31
---
Chain | Description
e | No description available
Chain information for Structure_20SCP_preholo.pdb f #5.32
---
Chain | Description
f | No description available
Chain information for Structure_20SCP_preholo.pdb g #5.33
---
Chain | Description
g | No description available
Chain information for Structure_20SCP_preholo.pdb h #5.34
---
Chain | Description
h | No description available
> rename #4 id #1
> rename #5 id #3
> rename #3 id #2
> hide #!1 models
> color #2 #a3d1f6ff models
> color #2.2 #90c8f5ff
> hide #!2 models
> show #!2 models
> hide #2.1 models
> hide #2.2 models
> show #2.1 models
> show #2.2 models
> color #2 silver models
> color #2.1 #a3d1f6ff
> color #2.2 #90c8f5ff
> color #2.3 #59acefff
> color #2.4 #2590eaff
> color #2.5 #176fbbff
> color #2.6 #326cb1ff
> color #2.7 #c7e4faff
> color #2.8 #f4d5ffff
> color #2.9 #efc1ffff
> color #2.10 #e497ffff
> color #2.11 #d356ffff
> color #2.12 #c300ffff
> color #2.13 #a500e0ff
> color #2.14 #9600ccff
> color #2.15 #fe9000ff
> color #2.8 #fb6565ff
> color #2.8 #fe9000ff
> color #2.9 #fb6565ff
> color #2.10 #ffccccff
> color #2.11 #f4d5ffff
> color #2.12 #efc1ffff
> color #2.13 #e497ffff
> color #2.14 #d356ffff
> color #2.15 #c300ffff
> color #2.16 #a500e0ff
> color #2.17 #9600ccff
> color #2.18 #a3d1f6ff
> color #2.19 #90c8f5ff
> color #2.20 #59acefff
> color #2.21 #2590eaff
> color #2.22 #176fbbff
> color #2.23 #326cb1ff
> color #2.24 #fe9000ff
> color #2.24 #c7e4faff
> color #2.25 #fe9000ff
> color #2.26 #fb6565ff
> color #2.27 #ffccccff
> color #2.28 #f4d5ffff
> color #2.29 #efc1ffff
> color #2.29 #e497ffff
> color #2.29 #efc1ffff
> color #2.30 #e497ffff
> color #2.31 #d356ffff
> color #2.32 #c300ffff
> color #2.33 #a500e0ff
> color #2.34 #9600ccff
> combine #2
> rename #3 Structure_20SCP_preholo.pdb
> hide #!2 models
> show #!1 models
> color zone #1 near #3 distance 11.3
> ui tool show "Side View"
> color zone #1 near #3 distance 11.3
> save
> /Users/fadlof/Downloads/ModelBuilding/ModelBuilding_preholo-20SCP/ChimeraX_scessions/Structure_20SCP_preholo_model_building.cxs
> includeMaps true
——— End of log from Wed Oct 4 16:50:44 2023 ———
opened ChimeraX session
> close #1
> rename #2 id #1
> rename #3 id #2
> open
> /Users/fadlof/Downloads/ModelBuilding/ModelBuilding_20SCP_preholo_v2/Phenix/RealSpaceRefine_1/Struture_20SCP_preholo_v2_real_space_refined_001.pdb
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb #3
---
Chain | Description
A R | No description available
B S | No description available
C | No description available
D U | No description available
E V | No description available
F W | No description available
G X | No description available
H Y | No description available
I Z | No description available
J a | No description available
K b | No description available
L c | No description available
M d | No description available
N e | No description available
O f | No description available
P g | No description available
Q h | No description available
T | No description available
> split #3
Split Struture_20SCP_preholo_v2_real_space_refined_001.pdb (#3) into 34 models
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb A
#3.1
---
Chain | Description
A | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb B
#3.2
---
Chain | Description
B | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb C
#3.3
---
Chain | Description
C | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb D
#3.4
---
Chain | Description
D | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb E
#3.5
---
Chain | Description
E | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb F
#3.6
---
Chain | Description
F | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb G
#3.7
---
Chain | Description
G | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb H
#3.8
---
Chain | Description
H | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb I
#3.9
---
Chain | Description
I | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb J
#3.10
---
Chain | Description
J | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb K
#3.11
---
Chain | Description
K | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb L
#3.12
---
Chain | Description
L | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb M
#3.13
---
Chain | Description
M | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb N
#3.14
---
Chain | Description
N | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb O
#3.15
---
Chain | Description
O | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb P
#3.16
---
Chain | Description
P | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb Q
#3.17
---
Chain | Description
Q | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb R
#3.18
---
Chain | Description
R | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb S
#3.19
---
Chain | Description
S | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb T
#3.20
---
Chain | Description
T | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb U
#3.21
---
Chain | Description
U | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb V
#3.22
---
Chain | Description
V | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb W
#3.23
---
Chain | Description
W | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb X
#3.24
---
Chain | Description
X | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb Y
#3.25
---
Chain | Description
Y | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb Z
#3.26
---
Chain | Description
Z | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb a
#3.27
---
Chain | Description
a | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb b
#3.28
---
Chain | Description
b | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb c
#3.29
---
Chain | Description
c | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb d
#3.30
---
Chain | Description
d | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb e
#3.31
---
Chain | Description
e | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb f
#3.32
---
Chain | Description
f | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb g
#3.33
---
Chain | Description
g | No description available
Chain information for Struture_20SCP_preholo_v2_real_space_refined_001.pdb h
#3.34
---
Chain | Description
h | No description available
> close #2
> close #1
> view
> style stick
Changed 57348 atom styles
> hide cartoons
> hide atoms
> show cartoons
> rename #3 id #1
> split #1
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb A, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb B, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb C, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb D, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb E, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb F, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb G, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb H, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb I, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb J, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb K, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb L, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb M, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb N, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb O, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb P, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb Q, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb R, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb S, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb T, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb U, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb V, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb W, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb X, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb Y, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb Z, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb a, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb b, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb c, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb d, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb e, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb f, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb g, has only
one piece
Did not split Struture_20SCP_preholo_v2_real_space_refined_001.pdb h, has only
one piece
> color #1.1 #a3d1f6ff
> color #1.2 #90c8f5ff
> color #1.3 #59acefff
> color #1.4 #2590eaff
> color #1.5 #176fbbff
> color #1.6 #326cb1ff
> color #1.7 #c7e4faff
> color #1.8 #fe9000ff
> color #1.9 #fb6565ff
> color #1.10 #ffccccff
> color #1.11 #f4d5ffff
> color #1.12 #efc1ffff
> color #1.13 #e497ffff
> color #1.14 #d356ffff
> color #1.15 #c300ffff
> color #1.16 #a500e0ff
> color #1.17 #9600ccff
> color #1.18 #a3d1f6ff
> color #1.19 #90c8f5ff
> color #1.20 #59acefff
> color #1.21 #2590eaff
> color #1.22 #176fbbff
> color #1.23 #326cb1ff
> color #1.24 #fe9000ff
> color #1.25 #fe9000ff
> color #1.25 #c7e4faff
> color #1.24 #c7e4faff
> color #1.25 #fe9000ff
> color #1.26 #fb6565ff
> color #1.27 #ffccccff
> color #1.28 #f4d5ffff
> color #1.29 #efc1ffff
> color #1.30 #e497ffff
> color #1.31 #d356ffff
> color #1.32 #c300ffff
> color #1.33 #a500e0ff
> color #1.34 #9600ccff
> select #2/K:1-43
Nothing selected
> color sel lime
> select #2/b:1-43
Nothing selected
> color sel lime
> ui tool show "Side View"
> select #3/K:1-43
Nothing selected
> color sel lime
> select #3/b:1-43
Nothing selected
> color sel lime
> select #1/K:1-43
216 atoms, 219 bonds, 1 pseudobond, 31 residues, 2 models selected
> color sel lime
> select #1/b:1-43
521 atoms, 529 bonds, 1 pseudobond, 72 residues, 3 models selected
> color sel lime
> select add #1
57348 atoms, 58406 bonds, 14 pseudobonds, 7527 residues, 43 models selected
> select subtract #1
Nothing selected
> hide #1.3 models
> select add #1.3
1744 atoms, 1767 bonds, 234 residues, 1 model selected
> select subtract #1.3
Nothing selected
> show #1.3 models
> hide #1.3 models
> show #1.3 models
> hide #1.2 models
> show #1.2 models
> color #1.2 #fe9000ff
> color #1.2 #90c8f5ff
> open /Users/fadlof/Downloads/Manuscript/Structures/PDBs/Structure_20SCP.pdb
Chain information for Structure_20SCP.pdb #2
---
Chain | Description
A O | No description available
B P | No description available
C Q | No description available
D R | No description available
E S | No description available
F T | No description available
G U | No description available
H V | No description available
I W | No description available
J X | No description available
K Y | No description available
L Z | No description available
M a | No description available
N b | No description available
> show cartoons
> style stick
Changed 105288 atom styles
> hide cartoons
> show cartoons
> hide atoms
> show cartoons
> ui mousemode right "rotate selected models"
> select add #2
47940 atoms, 48784 bonds, 8 pseudobonds, 6174 residues, 2 models selected
> rename #1 Structure_20SCP_preholo_v2_real_space_refined_001.pdb
> rename #1 20SCP_preholo_v2_real_space_refined_001.pdb
> rename #2 20SCP.pdb
> view matrix models
> #2,-0.027297,-0.99954,0.01349,332.79,0.9996,-0.027201,0.0073078,3.3165,-0.0069375,0.013684,0.99988,-1.0954
> rename #2 id #3
> split #3
Split 20SCP.pdb (#3) into 28 models
Chain information for 20SCP.pdb A #3.1
---
Chain | Description
A | No description available
Chain information for 20SCP.pdb B #3.2
---
Chain | Description
B | No description available
Chain information for 20SCP.pdb C #3.3
---
Chain | Description
C | No description available
Chain information for 20SCP.pdb D #3.4
---
Chain | Description
D | No description available
Chain information for 20SCP.pdb E #3.5
---
Chain | Description
E | No description available
Chain information for 20SCP.pdb F #3.6
---
Chain | Description
F | No description available
Chain information for 20SCP.pdb G #3.7
---
Chain | Description
G | No description available
Chain information for 20SCP.pdb H #3.8
---
Chain | Description
H | No description available
Chain information for 20SCP.pdb I #3.9
---
Chain | Description
I | No description available
Chain information for 20SCP.pdb J #3.10
---
Chain | Description
J | No description available
Chain information for 20SCP.pdb K #3.11
---
Chain | Description
K | No description available
Chain information for 20SCP.pdb L #3.12
---
Chain | Description
L | No description available
Chain information for 20SCP.pdb M #3.13
---
Chain | Description
M | No description available
Chain information for 20SCP.pdb N #3.14
---
Chain | Description
N | No description available
Chain information for 20SCP.pdb O #3.15
---
Chain | Description
O | No description available
Chain information for 20SCP.pdb P #3.16
---
Chain | Description
P | No description available
Chain information for 20SCP.pdb Q #3.17
---
Chain | Description
Q | No description available
Chain information for 20SCP.pdb R #3.18
---
Chain | Description
R | No description available
Chain information for 20SCP.pdb S #3.19
---
Chain | Description
S | No description available
Chain information for 20SCP.pdb T #3.20
---
Chain | Description
T | No description available
Chain information for 20SCP.pdb U #3.21
---
Chain | Description
U | No description available
Chain information for 20SCP.pdb V #3.22
---
Chain | Description
V | No description available
Chain information for 20SCP.pdb W #3.23
---
Chain | Description
W | No description available
Chain information for 20SCP.pdb X #3.24
---
Chain | Description
X | No description available
Chain information for 20SCP.pdb Y #3.25
---
Chain | Description
Y | No description available
Chain information for 20SCP.pdb Z #3.26
---
Chain | Description
Z | No description available
Chain information for 20SCP.pdb a #3.27
---
Chain | Description
a | No description available
Chain information for 20SCP.pdb b #3.28
---
Chain | Description
b | No description available
> color #3.1 #a3d1f6ff
> color #3.2 #90c8f5ff
> color #3.3 #59acefff
> color #3.4 #2590eaff
> color #3.5 #176fbbff
> color #3.6 #326cb1ff
> color #3.7 #c7e4faff
> color #3.8 #f4d5ffff
> color #3.9 #efc1ffff
> color #3.10 #e497ffff
> color #3.11 #d356ffff
> color #3.12 #c300ffff
> color #3.13 #a500e0ff
> color #3.14 #9600ccff
> color #3.15 #a3d1f6ff
> color #3.16 #90c8f5ff
> color #3.17 #59acefff
> color #3.18 #2590eaff
> color #3.19 #176fbbff
> color #3.20 #326cb1ff
> color #3.21 #c7e4faff
> color #3.22 #f4d5ffff
> color #3.23 #efc1ffff
> color #3.24 #e497ffff
> color #3.25 #d356ffff
> color #3.26 #c300ffff
> color #3.27 #a500e0ff
> color #3.28 #9600ccff
> ui mousemode right "rotate selected models"
> select add #3
47940 atoms, 48784 bonds, 8 pseudobonds, 6174 residues, 37 models selected
> view matrix models
> #3,0.3497,0.86363,0.36312,-97.891,-0.82148,0.46901,-0.32435,279.82,-0.45042,-0.18487,0.87347,126.98
> view matrix models
> #3,-0.94214,0.33438,-0.023851,270.25,-0.17375,-0.54793,-0.81828,423.6,-0.28668,-0.76679,0.57433,246.68
> hide #!1 models
> select subtract #3
Nothing selected
> show #!1 models
> select add #1.2
1802 atoms, 1830 bonds, 248 residues, 1 model selected
> select subtract #1.2
Nothing selected
> select add #1.2
1802 atoms, 1830 bonds, 248 residues, 1 model selected
> select subtract #1.2
Nothing selected
> select add #3
47940 atoms, 48784 bonds, 8 pseudobonds, 6174 residues, 37 models selected
> view matrix models
> #3,-0.63882,-0.72459,-0.25861,437.65,0.58498,-0.23914,-0.77499,239.16,0.4997,-0.64636,0.57664,96.239
> view matrix models
> #3,0.80986,-0.56864,-0.14414,150.98,0.44664,0.757,-0.47693,45.999,0.38032,0.32187,0.86704,-94.143
> view matrix models
> #3,0.99008,-0.13218,0.047539,15.634,0.14035,0.94483,-0.29596,35.044,-0.0057951,0.2997,0.95402,-40.593
> view matrix models
> #3,0.99589,-0.090283,-0.007666,16.53,0.090061,0.99561,-0.02554,-11.349,0.0099381,0.024745,0.99964,-4.6038
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.99589,-0.090283,-0.007666,11.89,0.090061,0.99561,-0.02554,-11.463,0.0099381,0.024745,0.99964,-3.2028
> view matrix models
> #3,0.99589,-0.090283,-0.007666,11.581,0.090061,0.99561,-0.02554,-12.786,0.0099381,0.024745,0.99964,-4.9988
> select subtract #3
Nothing selected
> open /Users/fadlof/Downloads/cryosparc_P109_J473_map_sharp.mrc
Opened cryosparc_P109_J473_map_sharp.mrc as #2, grid size 168,168,168, pixel
1.88, shown at level 0.126, step 1, values float32
> rename #2 id #4
> select add #3
47940 atoms, 48784 bonds, 8 pseudobonds, 6174 residues, 37 models selected
> select add #1
105288 atoms, 107190 bonds, 22 pseudobonds, 13701 residues, 80 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.72185,0.18933,0.66565,-99.897,0.68443,-0.052947,-0.72716,183.7,-0.10243,0.98048,-0.1678,65.061,#3,0.74255,0.1398,0.65504,-97.285,0.66962,-0.1325,-0.73079,195.94,-0.015371,0.98127,-0.192,52.177
> view matrix models
> #1,0.77513,0.51556,0.36521,-108.35,0.62805,-0.69162,-0.35666,229.88,0.068703,0.50583,-0.85989,234.2,#3,0.822,0.45235,0.34597,-107.79,0.55964,-0.75411,-0.34369,247.78,0.10543,0.47613,-0.87303,232.83
> ui mousemode right "translate selected models"
> view matrix models
> #1,0.77513,0.51556,0.36521,-106.83,0.62805,-0.69162,-0.35666,220.96,0.068703,0.50583,-0.85989,201.33,#3,0.822,0.45235,0.34597,-106.27,0.55964,-0.75411,-0.34369,238.86,0.10543,0.47613,-0.87303,199.96
> view matrix models
> #1,0.77513,0.51556,0.36521,-105.3,0.62805,-0.69162,-0.35666,222.87,0.068703,0.50583,-0.85989,199.85,#3,0.822,0.45235,0.34597,-104.74,0.55964,-0.75411,-0.34369,240.77,0.10543,0.47613,-0.87303,198.47
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.71737,0.47193,0.51251,-115.15,0.69039,-0.58023,-0.43207,208.78,0.093462,0.66379,-0.74206,150.55,#3,0.76202,0.41777,0.49477,-115.44,0.631,-0.6507,-0.42239,226.36,0.14548,0.63407,-0.75946,146.86
> view matrix models
> #1,0.68906,0.48067,0.54236,-117.42,0.71754,-0.55748,-0.41755,198.5,0.10165,0.67689,-0.72904,144.96,#3,0.7349,0.42977,0.52461,-118.3,0.66023,-0.63015,-0.40867,216.03,0.15495,0.6467,-0.74684,141.13
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.76101,0.45099,0.46633,-110.53,0.64754,-0.57177,-0.50376,226.46,0.039442,0.68534,-0.72716,152.82,#3,0.80313,0.39184,0.44881,-109.81,0.58837,-0.64019,-0.49394,243.79,0.093776,0.66077,-0.74471,148.15
> view matrix models
> #1,0.64946,0.52771,0.54747,-119.69,0.75854,-0.49985,-0.41804,183.06,0.05305,0.68678,-0.72492,150.11,#3,0.69975,0.4803,0.52882,-121.66,0.70625,-0.57648,-0.41094,200.32,0.10748,0.66104,-0.74261,145.56
> view matrix models
> #1,0.68943,0.58571,0.42618,-113.93,0.70321,-0.40009,-0.58773,205.16,-0.17373,0.70489,-0.68771,175.39,#3,0.74358,0.53144,0.40578,-115.57,0.65844,-0.47637,-0.58269,221.35,-0.11636,0.70046,-0.70414,167.8
> view matrix models
> #1,0.61113,0.54059,0.57817,-121.29,0.78845,-0.48017,-0.38443,169.39,0.069798,0.6908,-0.71967,145.97,#3,0.66305,0.49735,0.55947,-124.02,0.73814,-0.55876,-0.37808,186.58,0.12457,0.66365,-0.7376,141.54
> view matrix models
> #1,0.63251,0.5509,0.54446,-120.52,0.77455,-0.4473,-0.44721,177.03,-0.002833,0.70457,-0.70962,153.19,#3,0.68493,0.50485,0.52535,-122.96,0.72663,-0.52633,-0.44157,193.95,0.053581,0.68418,-0.72735,147.69
> view matrix models
> #1,0.59051,0.62886,0.5058,-120.24,0.80215,-0.52621,-0.28224,156.64,0.088665,0.57239,-0.81517,178.39,#3,0.64974,0.5853,0.48503,-123.97,0.74865,-0.60331,-0.27485,174.07,0.13175,0.5417,-0.83018,176.17
> ui mousemode right "translate selected models"
> view matrix models
> #1,0.59051,0.62886,0.5058,-127.18,0.80215,-0.52621,-0.28224,166.79,0.088665,0.57239,-0.81517,176.58,#3,0.64974,0.5853,0.48503,-130.91,0.74865,-0.60331,-0.27485,184.22,0.13175,0.5417,-0.83018,174.37
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.6535,0.55296,0.51689,-127.25,0.7439,-0.59531,-0.30366,191.69,0.1398,0.58296,-0.80039,164.52,#3,0.70575,0.50432,0.49757,-129.33,0.68421,-0.66738,-0.29405,209.43,0.18378,0.54797,-0.81606,162.69
> ui mousemode right "translate selected models"
> view matrix models
> #1,0.6535,0.55296,0.51689,-122.79,0.7439,-0.59531,-0.30366,190.63,0.1398,0.58296,-0.80039,166.16,#3,0.70575,0.50432,0.49757,-124.88,0.68421,-0.66738,-0.29405,208.37,0.18378,0.54797,-0.81606,164.32
> ui tool show "Fit in Map"
> fitmap #1.1 inMap #4
Fit molecule Struture_20SCP_preholo_v2_real_space_refined_001.pdb A (#1.1) to
map cryosparc_P109_J473_map_sharp.mrc (#4) using 1720 atoms
average map value = 0.1297, steps = 212
shifted from previous position = 17.7
rotated from previous position = 16.4 degrees
atoms outside contour = 1124, contour level = 0.12571
Position of Struture_20SCP_preholo_v2_real_space_refined_001.pdb A (#1.1)
relative to cryosparc_P109_J473_map_sharp.mrc (#4) coordinates:
Matrix rotation and translation
0.98563238 -0.02790418 -0.16658383 40.62428330
0.06539518 0.97238256 0.22404379 -52.72813305
0.15573146 -0.23171859 0.96023654 23.80870138
Axis -0.80529012 -0.56950141 0.16485137
Axis point 0.00000000 60.73630497 239.68406271
Rotation angle (degrees) 16.43815564
Shift along axis 1.23930918
> undo
> combine #1
> close #2
> combine #1
> combine #3
> rename #2 20SCP_preholo_v2_real_space_refined_001.pdb
> rename #5 20SCP.pdb
> rename #4 id #6
> rename #6 id #4
> rename #4 id #6
> rename #5 id #4
> rename #6 id #7
> rename #4 id #6
> rename #3 id #5
> close #1
> select subtract #5
Nothing selected
> close #5
> hide #!6 models
> fitmap #2 inMap #7
Fit molecule 20SCP_preholo_v2_real_space_refined_001.pdb (#2) to map
cryosparc_P109_J473_map_sharp.mrc (#7) using 57348 atoms
average map value = 0.262, steps = 204
shifted from previous position = 6.95
rotated from previous position = 31.2 degrees
atoms outside contour = 17464, contour level = 0.12571
Position of 20SCP_preholo_v2_real_space_refined_001.pdb (#2) relative to
cryosparc_P109_J473_map_sharp.mrc (#7) coordinates:
Matrix rotation and translation
0.80676916 0.59074841 0.01182635 -66.05750055
0.57000381 -0.77285526 -0.27890933 248.20605753
-0.15562519 0.23175651 -0.96024462 292.45896567
Axis 0.94951134 0.31135259 -0.03857166
Axis point 0.00000000 113.82906765 162.71743593
Rotation angle (degrees) 164.40059527
Shift along axis 3.27662520
> show #!6 models
> hide #!2 models
> fitmap #6 inMap #7
Fit molecule 20SCP.pdb (#6) to map cryosparc_P109_J473_map_sharp.mrc (#7)
using 47940 atoms
average map value = 0.2055, steps = 112
shifted from previous position = 4.31
rotated from previous position = 17.2 degrees
atoms outside contour = 21600, contour level = 0.12571
Position of 20SCP.pdb (#6) relative to cryosparc_P109_J473_map_sharp.mrc (#7)
coordinates:
Matrix rotation and translation
0.29509812 -0.74954326 0.59253860 131.60198787
-0.58433684 -0.63223828 -0.50874867 447.08612476
0.75595472 -0.19611136 -0.62455807 156.05278266
Axis 0.80258429 -0.41951234 0.42410830
Axis point -0.00000000 247.96895511 70.23713595
Rotation angle (degrees) 168.76876190
Shift along axis -15.75317566
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.5rc202211182308 (2022-11-18)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-20.2.44
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2,7 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 8 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1916.40.8.0.0 (iBridge: 20.16.420.0.0,0)
OS Loader Version: 564.40.4~27
Software:
System Software Overview:
System Version: macOS 13.0.1 (22A400)
Kernel Version: Darwin 22.1.0
Time since boot: 6 Tage, 6 Stunden und 27 Minuten
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.1.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.5
ChimeraX-AtomicLibrary: 8.0.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5rc202211182308
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.3
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.3
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.0.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.0.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.32
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.1
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.12
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.10.0
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