id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 9996 view command not doing smooth zoom rpeng@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.22621 ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC) Description I did 'view name p1', then use the scroll button of mouse to zoom in the view, and then 'view name p2'. But when I do 'view p1; view p2 60', it's not zooming gradually to p2, but a 1 frame change at the end. I guess it's something realted with camera setting, but I really don't know how to fix this. In a previous session same thing works fine. Log: UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""C:\\\Users\\\kfzr5\\\OneDrive - Florida State > University\\\data\\\test.cxs"" Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level 377, step 1, values float32 Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at level 128, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel 4.04, shown at level 0.53, step 1, values float32 Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at level 0.218, step 1, values float32 Opened volume difference as #12, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Log from Mon Oct 16 11:12:02 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""C:\\\Users\\\kfzr5\\\OneDrive - Florida State > University\\\data\\\20230911_lattice.cxs"" Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at level 128, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel 4.04, shown at level 0.247, step 1, values float32 Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at level 0.218, step 1, values float32 Opened volume difference as #12, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Log from Sun Oct 8 14:18:16 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""C:\\\Users\\\kfzr5\\\OneDrive - Florida State > University\\\data\\\20230911_lattice.cxs"" Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level 436, step 1, values float32 Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level 167, step 1, values float32 Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level 288, step 1, values float32 Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level 197, step 1, values float32 Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level 460, step 1, values float32 Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level 238, step 1, values float32 Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level 113, step 1, values float32 Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level 264, step 1, values float32 Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level 142, step 1, values float32 Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level 395, step 1, values float32 Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at level 128, step 1, values float32 Opened volume difference 0 as #6.1, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 1 as #6.2, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 2 as #6.3, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 3 as #6.4, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 4 as #6.5, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 5 as #6.6, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 6 as #6.7, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 7 as #6.8, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference as #7, grid size 224,224,224, pixel 4.04, shown at step 1, values float32 Opened volume difference 0 as #8.1, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 1 as #8.2, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 2 as #8.3, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 3 as #8.4, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 4 as #8.5, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 5 as #8.6, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 6 as #8.7, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 7 as #8.8, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel 4.04, shown at level 0.247, step 1, values float32 Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at level 0.218, step 1, values float32 Log from Sun Oct 8 14:12:37 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""C:\\\Users\\\kfzr5\\\OneDrive - Florida State > University\\\data\\\20230911_lattice.cxs"" Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level 436, step 1, values float32 Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level 167, step 1, values float32 Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level 288, step 1, values float32 Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level 197, step 1, values float32 Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level 460, step 1, values float32 Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level 238, step 1, values float32 Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level 113, step 1, values float32 Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level 264, step 1, values float32 Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level 142, step 1, values float32 Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level 395, step 1, values float32 Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at level 128, step 1, values float32 Opened volume difference 0 as #6.1, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 1 as #6.2, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 2 as #6.3, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 3 as #6.4, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 4 as #6.5, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 5 as #6.6, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 6 as #6.7, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 7 as #6.8, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference as #7, grid size 224,224,224, pixel 4.04, shown at step 1, values float32 Opened volume difference 0 as #8.1, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 1 as #8.2, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 2 as #8.3, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 3 as #8.4, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 4 as #8.5, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 5 as #8.6, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 6 as #8.7, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 7 as #8.8, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel 4.04, shown at level 0.247, step 1, values float32 Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at level 0.218, step 1, values float32 Log from Sun Oct 8 12:28:18 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""C:\\\Users\\\kfzr5\\\OneDrive - Florida State > University\\\data\\\20230911_lattice.cxs"" Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level 436, step 1, values float32 Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level 167, step 1, values float32 Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level 288, step 1, values float32 Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level 197, step 1, values float32 Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level 460, step 1, values float32 Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level 238, step 1, values float32 Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level 113, step 1, values float32 Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level 264, step 1, values float32 Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level 142, step 1, values float32 Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level 395, step 1, values float32 Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at level 128, step 1, values float32 Opened volume difference 0 as #6.1, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 1 as #6.2, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 2 as #6.3, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 3 as #6.4, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 4 as #6.5, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 5 as #6.6, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 6 as #6.7, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 7 as #6.8, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference as #7, grid size 224,224,224, pixel 4.04, shown at step 1, values float32 Opened volume difference 0 as #8.1, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 1 as #8.2, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 2 as #8.3, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 3 as #8.4, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 4 as #8.5, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 5 as #8.6, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 6 as #8.7, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 7 as #8.8, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel 4.04, shown at level 0.247, step 1, values float32 Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at level 0.218, step 1, values float32 Log from Mon Sep 11 08:12:07 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""C:\\\Users\\\kfzr5\\\OneDrive - Florida State > University\\\data\\\20230803_model_domaincolored.cxs"" Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level 436, step 1, values float32 Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level 167, step 1, values float32 Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level 288, step 1, values float32 Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level 296, step 1, values float32 Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level 460, step 1, values float32 Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level 238, step 1, values float32 Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level 113, step 1, values float32 Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level 264, step 1, values float32 Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level 142, step 1, values float32 Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level 395, step 1, values float32 Log from Tue Sep 5 22:20:13 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""C:\\\Users\\\kfzr5\\\OneDrive - Florida State > University\\\data\\\20230803_model_domaincolored.cxs"" Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level 436, step 1, values float32 Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level 167, step 1, values float32 Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level 288, step 1, values float32 Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level 296, step 1, values float32 Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level 460, step 1, values float32 Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level 238, step 1, values float32 Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level 113, step 1, values float32 Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level 264, step 1, values float32 Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level 142, step 1, values float32 Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level 395, step 1, values float32 Log from Thu Aug 17 03:19:28 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""C:\Users\kfzr5\OneDrive - Florida State > University\Drp1\structures_kristy\PA_raw.mrc"" format mrc Opened PA_raw.mrc as #1, grid size 224,224,224, pixel 4.04, shown at level 689, step 1, values float32 > open ""C:/Users/kfzr5/OneDrive - Florida State > University/Drp1/structures_kristy/20230803_stacked_lattice/lattice_dVD526-624.pdb"" Chain information for lattice_dVD526-624.pdb #2 --- Chain | Description A D E H I L M P Q T U X Y b c d i j | No description available B C F G J K N O R S V W Z a e f g h | No description available > volume #1 level 389.5 > ui tool show ""Model Panel"" > hide #!1 models Drag select of 364815 atoms, 54 pseudobonds > cartoon (#!2 & sel) > hide (#!2 & sel) target a Alignment identifier is 1 Alignment identifier is 2 Drag select of 42 residues > select up 1978 atoms, 1987 bonds, 122 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:350 126 atoms, 108 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:350-492 41490 atoms, 41832 bonds, 2574 residues, 1 model selected > color sel purple Drag select of 287 residues > select up 5762 atoms, 5797 bonds, 363 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:1 342 atoms, 324 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:1-322 92466 atoms, 93060 bonds, 5796 residues, 1 model selected > color sel cyan > select /b:302 14 atoms, 14 bonds, 1 residue, 1 model selected > select up 701 atoms, 706 bonds, 41 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:282 252 atoms, 234 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:282-322 12618 atoms, 12708 bonds, 738 residues, 1 model selected > color sel red Drag select of 199 residues Drag select of 111 residues Drag select of 206 residues > select up 5303 atoms, 5329 bonds, 335 residues, 1 model selected > select up 16392 atoms, 16512 bonds, 1024 residues, 1 model selected > select down 5303 atoms, 5329 bonds, 335 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:272 396 atoms, 378 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:1-272 73908 atoms, 74340 bonds, 18 pseudobonds, 4662 residues, 2 models selected > color (#!2 & sel) red > color (#!2 & sel) lime Drag select of 352 residues, 1 pseudobonds > select up 11972 atoms, 12051 bonds, 1 pseudobond, 733 residues, 2 models selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:381 288 atoms, 270 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:381-690 62424 atoms, 62892 bonds, 18 pseudobonds, 3798 residues, 2 models selected > color (#!2 & sel) purple Drag select of 454 residues, 2 pseudobonds > select up 13358 atoms, 13449 bonds, 2 pseudobonds, 815 residues, 2 models selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:301 342 atoms, 324 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:301-734 97479 atoms, 98181 bonds, 18 pseudobonds, 6030 residues, 2 models selected Drag select of 264 residues, 1 pseudobonds > select up 11022 atoms, 11096 bonds, 1 pseudobond, 669 residues, 2 models selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:321 198 atoms, 180 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:321-703 82683 atoms, 83331 bonds, 18 pseudobonds, 5112 residues, 2 models selected > color (#!2 & sel) purple Drag select of 14 residues > select up 789 atoms, 790 bonds, 49 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:704 270 atoms, 252 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:704-736 9594 atoms, 9630 bonds, 594 residues, 1 model selected > color sel red Drag select of 3 residues > select up 300 atoms, 301 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:301 342 atoms, 324 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:301-318 5400 atoms, 5418 bonds, 324 residues, 1 model selected > color sel red Drag select of 3 residues > select up 443 atoms, 442 bonds, 28 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704 270 atoms, 252 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704-732 8244 atoms, 8226 bonds, 522 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704 270 atoms, 252 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704-736 9594 atoms, 9630 bonds, 594 residues, 1 model selected > color sel red Drag select of 62 residues > select up 3135 atoms, 3153 bonds, 191 residues, 1 model selected Drag select of 4 residues > select up 339 atoms, 340 bonds, 21 residues, 1 model selected > select /L:325 14 atoms, 14 bonds, 1 residue, 1 model selected > select up 77 atoms, 77 bonds, 6 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:323 126 atoms, 108 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:323-328 1386 atoms, 1386 bonds, 108 residues, 1 model selected > color sel red > select /L:332 14 atoms, 13 bonds, 1 residue, 1 model selected > select up 339 atoms, 340 bonds, 21 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:329 396 atoms, 378 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:329-349 6102 atoms, 6120 bonds, 378 residues, 1 model selected > color sel purple > select /L:365 24 atoms, 23 bonds, 1 residue, 1 model selected > select up 287 atoms, 290 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:363 126 atoms, 108 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:363-380 5166 atoms, 5220 bonds, 324 residues, 1 model selected > color sel purple Drag select of 4 residues > select /L:351 14 atoms, 13 bonds, 1 residue, 1 model selected > select up 185 atoms, 185 bonds, 13 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:350 126 atoms, 108 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:350-362 3330 atoms, 3330 bonds, 234 residues, 1 model selected > color sel purple Drag select of 4 residues > select clear > select /L:702 16 atoms, 15 bonds, 1 residue, 1 model selected > select up 225 atoms, 225 bonds, 14 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:690 342 atoms, 324 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:690-703 4050 atoms, 4050 bonds, 252 residues, 1 model selected > color sel purple Drag select of 1 residues > select up 142 atoms, 143 bonds, 10 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:319 342 atoms, 324 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:319-328 2556 atoms, 2574 bonds, 180 residues, 1 model selected > color sel purple > select /J:292 19 atoms, 18 bonds, 1 residue, 1 model selected > select up 313 atoms, 315 bonds, 17 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:282 252 atoms, 234 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:282-298 5634 atoms, 5670 bonds, 306 residues, 1 model selected > color sel red Drag select of 2 residues > select up 106 atoms, 106 bonds, 7 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:273 378 atoms, 378 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:273-281 2412 atoms, 2430 bonds, 162 residues, 1 model selected > color sel red > select clear > select /d:510 14 atoms, 13 bonds, 1 residue, 1 model selected > select up 355 atoms, 356 bonds, 23 residues, 1 model selected > color sel orange > select /d:627 12 atoms, 11 bonds, 1 residue, 1 model selected > select up 294 atoms, 295 bonds, 18 residues, 1 model selected > color sel orange > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:522 432 atoms, 414 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:522-638 5292 atoms, 5310 bonds, 18 pseudobonds, 324 residues, 2 models selected > color (#!2 & sel) orange > select /d:506 7 atoms, 6 bonds, 1 residue, 1 model selected > select up 355 atoms, 356 bonds, 23 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499 252 atoms, 252 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499-521 6390 atoms, 6408 bonds, 414 residues, 1 model selected > color sel orange > select /N:513 15 atoms, 14 bonds, 1 residue, 1 model selected > select up 345 atoms, 346 bonds, 22 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499 252 atoms, 252 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499-520 6210 atoms, 6228 bonds, 396 residues, 1 model selected > color sel orange Drag select of 6 residues > select up 242 atoms, 243 bonds, 15 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:521 180 atoms, 162 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:521-638 5463 atoms, 5481 bonds, 18 pseudobonds, 342 residues, 2 models selected > color (#!2 & sel) orange > show #!1 models > hide #!1 models > show #!1 models > ui tool show ""Color Zone"" > color zone #1 near #2 distance 24.24 > color zone #1 near #2 distance 11.48 > color zone #1 near #2 distance 39.29 > color zone #1 near #2 distance 38.29 > color zone #1 near #2 distance 24 [Repeated 1 time(s)] > volume #1 level 341.5 > color zone #1 near #2 distance 22 [Repeated 1 time(s)] > color zone #1 near #2 distance 21 > color zone #1 near #2 distance 20 [Repeated 1 time(s)] > hide #!1 models Alignment identifier is 1 > select clear Alignment identifier is 1 Alignment identifier is 2 Drag select of 2 residues > select up 142 atoms, 143 bonds, 10 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:319 342 atoms, 324 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:319-328 2556 atoms, 2574 bonds, 180 residues, 1 model selected > color sel red Drag select of 2 residues > select up 60 atoms, 59 bonds, 4 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:700 342 atoms, 324 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:700-703 1080 atoms, 1062 bonds, 72 residues, 1 model selected > color sel red > show #!1 models > color zone #1 near #2 distance 20 > volume splitbyzone #1 Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 6 as #3.7, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 > hide #!3.1 models > pwd Current working directory is: C:\ProgramData\ChimeraX > cd ""C:/Users/kfzr5/OneDrive - Florida State University/data"" Current working directory is: C:\Users\kfzr5\OneDrive - Florida State University\data > save ""C:/Users/kfzr5/OneDrive - Florida State > University/data/20230803_model_domaincolored.cxs"" includeMaps true > ui tool show ""Side View"" > lighting soft > set bgColor white > lighting full > lighting soft > lighting simple > lighting soft > lighting shadows true intensity 0.5 > lighting flat > lighting full > lighting soft > graphics silhouettes false > graphics silhouettes true > graphics silhouettes false > view sel > view orient [Repeated 2 time(s)] > hide #!3.2 models > show #!3.2 models > hide #!3.2 models > hide #!3.3 models > show #!3.3 models > hide #!3.4 models > hide #!3.7 models > hide #!3.6 models > hide #!3.5 models > volume #3.3 level 449.5 > show #!3.2 models > hide #!3.3 models > volume #3.2 level 456.2 > show #!3.3 models > hide #!3.3 models > hide #!3.2 models > show #!3.4 models > volume #3.4 level 304.4 > select clear > volume #3.4 level 336.2 > show #!3.5 models > hide #!3.4 models > volume #3.5 level 258.8 > volume #3.5 level 153 > show #!1 models > show #!3.6 models > hide #!1 models > hide #!3.5 models > volume #3.6 level 516.7 > hide #!3.6 models > hide #!3.7 models > select /B:300 11 atoms, 10 bonds, 1 residue, 1 model selected > select up 23 atoms, 22 bonds, 2 residues, 1 model selected > select clear Alignment identifier is 1 Alignment identifier is 2 > select /B:300 11 atoms, 10 bonds, 1 residue, 1 model selected > select up 23 atoms, 22 bonds, 2 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:299 216 atoms, 198 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:299-300 414 atoms, 396 bonds, 36 residues, 1 model selected > color sel red > color zone #1 near #2 distance 20 > close #3 > volume splitbyzone #1 Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 > hide #!3.3 models > show #!3.3 models > volume #3.3 level 218.2 > save ""C:/Users/kfzr5/OneDrive - Florida State > University/data/20230803_model_domaincolored.cxs"" includeMaps true > hide #!3.1 models > volume #3.2 level 436.4 > volume #3.3 level 166.8 > volume #3.4 level 426.5 > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > volume #3.4 level 484.8 > volume #3.4 level 288.5 > volume #3.5 level 424.3 > volume #3.5 level 295.6 > volume #3.6 level 459.9 > hide #!2 models > show #!2 models > hide #!3 models > show #!3 models > hide #!2 models > hide #!3 models > show #!2 models > show #!3.1 models > hide #!3 models > select /A 10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected > select /B 10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected > select /C 10035 atoms, 10106 bonds, 2 pseudobonds, 624 residues, 2 models selected > select /D 10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected > select /E 10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected > select /F 10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected > select /G 10035 atoms, 10106 bonds, 2 pseudobonds, 624 residues, 2 models selected > select /H 10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected > select /I 10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected > select /J 10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected > select /K 10035 atoms, 10106 bonds, 2 pseudobonds, 624 residues, 2 models selected > select /L 10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected > select /M 10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected > select /N 10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected > select 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 17 models selected > cartoon hide (#!2 & sel) > select /L 10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected > cartoon (#!2 & sel) > select /M 10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected > cartoon (#!2 & sel) > select /L 10232 atoms, 10304 bonds, 1 pseudobond, 637 residues, 2 models selected > select /K 10035 atoms, 10106 bonds, 2 pseudobonds, 624 residues, 2 models selected > cartoon (#!2 & sel) > select /J 10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected > cartoon (#!2 & sel) > cartoon hide (#!2 & sel) > select /N 10036 atoms, 10107 bonds, 2 pseudobonds, 624 residues, 2 models selected > cartoon (#!2 & sel) Drag select of 2522 residues, 6 pseudobonds > color zone #1 near sel distance 20 > volume splitbyzone #1 Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 > color zone #1 near sel distance 19 > color zone #1 near sel distance 18 [Repeated 1 time(s)] > hide #!4 models > show #!1 models > color zone #1 near sel distance 17 > color zone #1 near sel distance 16 > color zone #1 near sel distance 15 > color zone #1 near sel distance 14 > color zone #1 near sel distance 13 > color zone #1 near sel distance 12 > color zone #1 near sel distance 11 > color zone #1 near sel distance 10 > color zone #1 near sel distance 9.9 > color zone #1 near sel distance 9.8 > color zone #1 near sel distance 9.7 > color zone #1 near sel distance 9.6 > color zone #1 near sel distance 9.5 > color zone #1 near sel distance 9.6 > color zone #1 near sel distance 9.7 > color zone #1 near sel distance 9.8 > color zone #1 near sel distance 9.9 > color zone #1 near sel distance 10 > color zone #1 near sel distance 11 > color zone #1 near sel distance 12 > color zone #1 near sel distance 13 > hide #!1 models > show #!1 models > close #4 > volume splitbyzone #1 Opened PA_raw.mrc 0 as #4.1, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 1 as #4.2, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 2 as #4.3, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 3 as #4.4, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 4 as #4.5, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 Opened PA_raw.mrc 5 as #4.6, grid size 224,224,224, pixel 4.04, shown at level 342, step 1, values float32 > hide #!4.1 models > hide #!2 models > ui tool show ""Surface Color"" > volume #!4.2-6 style surface > hide #!4.2 models > hide #!4.3 models > hide #!4.4 models > hide #!4.5 models > hide #!4.6 models > show #!4.1 models > hide #!4.1 models > show #!4.2 models > show #!4.3 models > show #!4.4 models > show #!4.5 models > show #!4.6 models > show #!4.1 models > hide #!4.1 models > color single #4.2 > color zone #4.2 near #2 distance 24.24 > color single #4.2 [Repeated 1 time(s)] > show #!4.1 models > hide #!4.1 models > color #4.2 black models > color #4.2 #b20000ff models > color #4.2 #b2b2b2ff models > color #4.3 #b2b2b2ff models > color #4.4 #8000b2ff models > color #4.4 #0100b2ff models > color #4.4 #b2b2b2ff models > color #4.5 #b2b2b2ff models > color #4.6 #b2b2b2ff models > show #!3 models > hide #!3 models > show #!3 models > volume #4.2 level 238.3 > volume #4.3 level 157.9 > volume #4.3 level 139.9 > volume #4.4 level 268.4 > volume #4.5 level 299.3 > volume #4.5 level 218.6 > hide #!3.1 models > volume #4.5 level 141.8 > volume #4.6 level 184.6 > volume #4.6 level 394.8 > volume #4.4 level 273 > volume #4.4 level 268.4 > volume #4.4 level 263.8 > volume #4.3 level 113 > color #4.2 #b2b2b2b4 models > color #4.2 #ffffffb4 models > color #4.2 #b2b2b2b4 models > color #4.2 #ffffffb4 models > color #4.2 #b2b2b2b4 models > color #4.2 #ffffffb4 models > color #4.2 #b2b2b2b4 models > color #4.2 #b2b2b2ff models > color #4.2 white models > color #4.2 #b2b2b2ff models > color #4.2 white models > color #4.2 #b2b2b2ff models > color #4.2 #b2b2b2b4 models > show #!2 models > hide #!2 models > hide #!4 models > save ""C:/Users/kfzr5/OneDrive - Florida State > University/data/20230803_model_domaincolored.cxs"" ——— End of log from Thu Aug 17 03:19:28 2023 ——— opened ChimeraX session > color #3.2 #0cffffff models > color #3.2 #0c8effff models > color #3.2 #0c8eb5ff models > color #3.3 #ff5356ff models > color #3.4 #a60080ff models > color #3.4 #a62080ff models > color #3.4 #a62099ff models > color #3.6 #83ff00ff models > color #3.6 #83ff67ff models > lighting soft > pwd Current working directory is: C:\Users\kfzr5\OneDrive - Florida State University\data > save ""C:/Users/kfzr5/OneDrive - Florida State > University/data/20230803_model_domaincolored.cxs"" ——— End of log from Tue Sep 5 22:20:13 2023 ——— opened ChimeraX session > show #!4 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!4 models > show #!4 models > hide #!3 models > hide #!4 models > show #!4 models > hide #!4 models > show #!3 models > ui tool show ""Color Zone"" > hide #!3 models > show #!2 models Alignment identifier is 1 Alignment identifier is 2 Drag select of 29 residues > select up 1298 atoms, 1304 bonds, 82 residues, 1 model selected > select /L-M:499 28 atoms, 28 bonds, 2 residues, 1 model selected > select /L-M:499-638 1298 atoms, 1304 bonds, 2 pseudobonds, 82 residues, 2 models selected > color zone #3.6 near #2 distance 24.24 > hide #!3.6 models > show #!3.6 models > hide #!3.6 models > hide #!3.5 models > show #!3.5 models > select 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 34 models selected > cartoon (#!2 & sel) > show #!3.6 models > show #!3.1 models > hide #!3.1 models > hide #!3 models > show #!3 models > hide #!3.6 models > show #!3.6 models > color #3.6 #00aa00ff models > color #3.6 #83ff67ff models > hide #!3 models Drag select of 86 residues, 6 pseudobonds > select up 3242 atoms, 3256 bonds, 6 pseudobonds, 204 residues, 2 models selected > select up 61392 atoms, 61824 bonds, 6 pseudobonds, 3822 residues, 2 models selected > select down 3242 atoms, 3256 bonds, 6 pseudobonds, 204 residues, 2 models selected Drag select of 6 residues Drag select of 12 residues > select up 242 atoms, 243 bonds, 15 residues, 1 model selected > select up 8889 atoms, 8955 bonds, 551 residues, 1 model selected > select down 242 atoms, 243 bonds, 15 residues, 1 model selected Drag select of 44 residues, 1 pseudobonds > select up 2743 atoms, 2756 bonds, 1 pseudobond, 170 residues, 2 models selected > select /L-M:499 28 atoms, 28 bonds, 2 residues, 1 model selected > select /L-M:499-638 1298 atoms, 1304 bonds, 2 pseudobonds, 82 residues, 2 models selected > select /L-M:499 28 atoms, 28 bonds, 2 residues, 1 model selected > select /L-M:499-638 1298 atoms, 1304 bonds, 2 pseudobonds, 82 residues, 2 models selected Drag select of 56 residues, 2 pseudobonds Drag select of 22 residues, 2 pseudobonds > select up 617 atoms, 619 bonds, 2 pseudobonds, 38 residues, 2 models selected > select up 20464 atoms, 20608 bonds, 2 pseudobonds, 1274 residues, 2 models selected > select down 617 atoms, 619 bonds, 2 pseudobonds, 38 residues, 2 models selected Drag select of 43 residues, 2 pseudobonds > select up 1298 atoms, 1304 bonds, 2 pseudobonds, 82 residues, 2 models selected Drag select of 7 residues > select up 649 atoms, 651 bonds, 41 residues, 1 model selected > select /L-M:522 48 atoms, 46 bonds, 2 residues, 1 model selected > select /L-M:522-638 588 atoms, 590 bonds, 2 pseudobonds, 36 residues, 2 models selected > hide #!2 models > show #!2 models > select /L-M:336 38 atoms, 36 bonds, 2 residues, 1 model selected > select /L-M:336-363 838 atoms, 842 bonds, 56 residues, 1 model selected > select /L-M:286 20 atoms, 18 bonds, 2 residues, 1 model selected > select /L-M:286-338 1732 atoms, 1742 bonds, 106 residues, 1 model selected > select /L-M:497-522 836 atoms, 840 bonds, 52 residues, 1 model selected > select /L-M:497-636 1334 atoms, 1342 bonds, 2 pseudobonds, 82 residues, 2 models selected Drag select of 6 residues > select up 649 atoms, 652 bonds, 41 residues, 1 model selected > select up 10232 atoms, 10304 bonds, 637 residues, 1 model selected > select down 649 atoms, 652 bonds, 41 residues, 1 model selected > select clear Drag select of 7 residues > show #!3 models > hide #!2 models > show #!2 models > hide #!3 models > select up 355 atoms, 356 bonds, 23 residues, 1 model selected > select clear Alignment identifier is 1 Alignment identifier is 2 Drag select of 6 residues > select up 1056 atoms, 1061 bonds, 65 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:451 252 atoms, 234 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:451-492 12618 atoms, 12690 bonds, 756 residues, 1 model selected Drag select of 6 residues > select up 649 atoms, 652 bonds, 41 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499 252 atoms, 252 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499-638 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected > show #!3 models > hide #!3.2 models > hide #!3.3 models > hide #!3.4 models > hide #!3.6 models > color zone #3.5 near sel distance 9.1 > color zone #3.5 near sel distance 9 > color zone #3.5 near sel distance 8.9 > color zone #3.5 near sel distance 8.8 > color zone #3.5 near sel distance 8.7 > color zone #3.5 near sel distance 8.6 > color zone #3.5 near sel distance 8.5 > color zone #3.5 near sel distance 8.4 > color zone #3.5 near sel distance 8.3 [Repeated 1 time(s)] > color #3.5 black models > color #3.5 #969696ff models > color zone #3.5 near sel distance 8.3 > color zone #3.5 near sel distance 8.2 > color zone #3.5 near sel distance 8.1 > color zone #3.5 near sel distance 8 > color zone #3.5 near sel distance 7.9 > color zone #3.5 near sel distance 7.8 > color zone #3.5 near sel distance 7.7 > color zone #3.5 near sel distance 7.6 > color zone #3.5 near sel distance 7.5 > color zone #3.5 near sel distance 7.4 > color zone #3.5 near sel distance 7.3 > color zone #3.5 near sel distance 7.2 > color zone #3.5 near sel distance 7.1 > color zone #3.5 near sel distance 7 > color zone #3.5 near sel distance 6.9 > color zone #3.5 near sel distance 6.8 > color zone #3.5 near sel distance 6.7 > color zone #3.5 near sel distance 6.6 > color zone #3.5 near sel distance 6.5 > color zone #3.5 near sel distance 6.4 > color zone #3.5 near sel distance 6.3 > color zone #3.5 near sel distance 6.2 > color zone #3.5 near sel distance 6.3 > color zone #3.5 near sel distance 6.4 > hide #!2 models > show #!2 models > hide #!3.5 models > show #!3.5 models > hide #!2 models > show #!2 models > hide #!3.5 models Drag select of 8 residues Drag select of 6 residues > select up 537 atoms, 540 bonds, 34 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499 252 atoms, 252 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499-631 9666 atoms, 9720 bonds, 18 pseudobonds, 612 residues, 2 models selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499 252 atoms, 252 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499-638 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected > select ~sel 353133 atoms, 355617 bonds, 36 pseudobonds, 21960 residues, 30 models selected > cartoon hide (#!2 & sel) > select clear > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499 252 atoms, 252 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:499-631 9666 atoms, 9720 bonds, 18 pseudobonds, 612 residues, 2 models selected > cartoon (#!2 & sel) Drag select of 1341 residues, 35 pseudobonds > color zone #3.5 near sel distance 6.4 > show #!3.5 models > color zone #3.5 near sel distance 6.3 > color zone #3.5 near sel distance 6.2 > color zone #3.5 near sel distance 6.1 > color zone #3.5 near sel distance 6 > color zone #3.5 near sel distance 5.9 > color zone #3.5 near sel distance 5.8 > color zone #3.5 near sel distance 5.7 > color zone #3.5 near sel distance 5.6 > color zone #3.5 near sel distance 5.5 > color zone #3.5 near sel distance 5.4 > color zone #3.5 near sel distance 5.3 > color zone #3.5 near sel distance 5.2 > color zone #3.5 near sel distance 5.1 > color zone #3.5 near sel distance 5 > color zone #3.5 near sel distance 4.9 > show #!1 models > color #1 #b2b2b2b4 models > color zone #3.5 near sel distance 5 > color zone #3.5 near sel distance 5.1 > color zone #3.5 near sel distance 5.2 > color zone #3.5 near sel distance 5.3 > color zone #3.5 near sel distance 5.4 > color zone #3.5 near sel distance 5.5 > color zone #3.5 near sel distance 5.6 > color zone #3.5 near sel distance 5.7 [Repeated 1 time(s)] > color zone #3.5 near sel distance 5.8 > color zone #3.5 near sel distance 5.9 > color zone #3.5 near sel distance 6 > color zone #3.5 near sel distance 6.1 > color zone #3.5 near sel distance 6.2 > color zone #3.5 near sel distance 6.3 > color zone #3.5 near sel distance 6.4 > color zone #3.5 near sel distance 6.5 > hide #!3.5 models > lighting soft > lighting simple > select clear > volume #1 level 383.4 > volume #1 level 327.6 > hide #!1 models > show #!3.5 models > show #!3.1 models > volume #3.5 level 197.1 QWindowsWindow::setGeometry: Unable to set geometry 573x295+717+93 (frame: 609x398+699+8) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 553x231+727+147 (frame: 589x334+709+62) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 552x231+1452+294 (frame: 568x270+1444+263) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 572x295+1442+240 (frame: 588x334+1434+209) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) > hide #!3.5 models > show #!3.5 models No atoms selected for color zoning [Repeated 16 time(s)] > hide #!2 models > show #!2 models > hide #!3.5 models > hide #!3 models Drag select of 1350 residues, 36 pseudobonds > color zone #3.5 near sel distance 4.9 > show #!3.5 models > color zone #3.5 near sel distance 4.8 > color zone #3.5 near sel distance 4.7 > color zone #3.5 near sel distance 4.6 > color zone #3.5 near sel distance 4.5 > color zone #3.5 near sel distance 4.4 > color zone #3.5 near sel distance 4.3 > color zone #3.5 near sel distance 4.2 > color zone #3.5 near sel distance 4.1 > color zone #3.5 near sel distance 4.04 > hide #!3.5 models > show #!3.2 models > show #!3.3 models > show #!3.4 models > show #!3.5 models > show #!3.6 models > select 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 33 models selected > cartoon (#!2 & sel) > hide #!3 models Drag select of 11 residues > select up 789 atoms, 790 bonds, 49 residues, 1 model selected Drag select of 60 residues > select up 1950 atoms, 1958 bonds, 122 residues, 1 model selected > select up 18428 atoms, 18560 bonds, 1149 residues, 1 model selected > select up 18650 atoms, 18783 bonds, 1163 residues, 1 model selected > select up 20268 atoms, 20411 bonds, 1261 residues, 1 model selected > select up 364815 atoms, 367389 bonds, 22698 residues, 1 model selected > select down 20268 atoms, 20411 bonds, 1261 residues, 1 model selected > select ~sel 344547 atoms, 346978 bonds, 51 pseudobonds, 21437 residues, 30 models selected > cartoon hide (#!2 & sel) Drag select of 14 residues Drag select of 246 residues, 1 pseudobonds > select up 4911 atoms, 4936 bonds, 1 pseudobond, 308 residues, 2 models selected > select down 3891 atoms, 1 pseudobond, 246 residues, 2 models selected Drag select of 176 residues, 1 pseudobonds > select up 3929 atoms, 3949 bonds, 1 pseudobond, 244 residues, 2 models selected > select down 2815 atoms, 1 pseudobond, 176 residues, 2 models selected Drag select of 158 residues, 1 pseudobonds Drag select of 196 residues, 1 pseudobonds > select up 3614 atoms, 3633 bonds, 1 pseudobond, 227 residues, 2 models selected > select up 8196 atoms, 8256 bonds, 1 pseudobond, 512 residues, 2 models selected > select down 3614 atoms, 3633 bonds, 1 pseudobond, 227 residues, 2 models selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:1 342 atoms, 324 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:1-273 74286 atoms, 74736 bonds, 18 pseudobonds, 4680 residues, 2 models selected > color (#!2 & sel) #83ff67ff Drag select of 197 residues > select up 4063 atoms, 4084 bonds, 256 residues, 1 model selected > select up 8392 atoms, 8453 bonds, 525 residues, 1 model selected > select down 4063 atoms, 4084 bonds, 256 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:271 396 atoms, 378 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:1-271 77040 atoms, 77490 bonds, 4878 residues, 1 model selected > color sel #0c8eb5ff Drag select of 16 residues Drag select of 6 residues Drag select of 23 residues > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:280 252 atoms, 234 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:1-280 79722 atoms, 80208 bonds, 5040 residues, 1 model selected > color sel #ffffffff > color sel #0c8eb5ff > select 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 30 models selected > cartoon (#!2 & sel) > undo Drag select of 127 residues > select up 3316 atoms, 3340 bonds, 203 residues, 1 model selected > select up 17281 atoms, 17408 bonds, 1076 residues, 1 model selected > select down 3316 atoms, 3340 bonds, 203 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:389 252 atoms, 234 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:389-410 6138 atoms, 6192 bonds, 396 residues, 1 model selected Drag select of 122 residues > select up 3208 atoms, 3231 bonds, 195 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:329 396 atoms, 378 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:329-492 47592 atoms, 47970 bonds, 2952 residues, 1 model selected > color sel #a62099ff Drag select of 3 residues > select up 860 atoms, 865 bonds, 51 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:639 432 atoms, 414 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:639-689 15480 atoms, 15570 bonds, 918 residues, 1 model selected > color sel #ffffffff > color sel #a62099ff > select clear > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:638 180 atoms, 162 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:493-638 13599 atoms, 13689 bonds, 18 pseudobonds, 846 residues, 2 models selected Drag select of 176 residues > select up 3454 atoms, 3478 bonds, 210 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:329 396 atoms, 378 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:329-498 49518 atoms, 49932 bonds, 3060 residues, 1 model selected > color sel #ffffffff > color sel #a62099ff > select /E:664 12 atoms, 11 bonds, 1 residue, 1 model selected > select up 879 atoms, 884 bonds, 52 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:639 432 atoms, 414 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:639-690 15822 atoms, 15912 bonds, 936 residues, 1 model selected > color sel #ffffffff > color sel #a62099ff Drag select of 8 residues > select up 373 atoms, 372 bonds, 25 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:389 252 atoms, 234 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:389-400 3384 atoms, 3366 bonds, 216 residues, 1 model selected > color sel #ffffffff > color sel #a62099ff Drag select of 2 residues > select up 153 atoms, 156 bonds, 10 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:401 126 atoms, 108 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:401-410 2754 atoms, 2808 bonds, 180 residues, 1 model selected > color sel #ffffffff > color sel #a62099ff Drag select of 3 residues > select up 185 atoms, 185 bonds, 13 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:350 126 atoms, 108 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:350-362 3330 atoms, 3330 bonds, 234 residues, 1 model selected > color sel #ffffffff > color sel #a62099ff Drag select of 21 residues > select up 931 atoms, 934 bonds, 59 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:704 270 atoms, 252 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:704-736 9594 atoms, 9630 bonds, 594 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:700 342 atoms, 324 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:700-736 10674 atoms, 10710 bonds, 666 residues, 1 model selected > color sel #ff5356ff Drag select of 6 residues > select up 442 atoms, 445 bonds, 28 residues, 1 model selected Drag select of 2 residues > select up 336 atoms, 338 bonds, 19 residues, 1 model selected Drag select of 6 residues > select up 442 atoms, 445 bonds, 28 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:282 252 atoms, 234 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:282-328 14004 atoms, 14112 bonds, 846 residues, 1 model selected > color sel #ffffffff > color sel #ff5356ff Drag select of 3 residues > select up 106 atoms, 106 bonds, 7 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:273 378 atoms, 378 bonds, 18 residues, 1 model selected > select /B-C,F-G,J-K,N-O,e,g,V-W,R-S,Z-a,f,h:273-281 2412 atoms, 2430 bonds, 162 residues, 1 model selected > color sel #ffffffff > color sel #ff5356ff Drag select of 24 residues > select up 1234 atoms, 1241 bonds, 74 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:701 252 atoms, 234 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:701-736 10332 atoms, 10368 bonds, 648 residues, 1 model selected > color sel #ffffffff > color sel #ff5356ff Drag select of 8 residues > select up 1234 atoms, 1241 bonds, 74 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704 270 atoms, 252 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:704-736 9594 atoms, 9630 bonds, 594 residues, 1 model selected > color sel #ffffffff > color sel #ff5356ff Drag select of 17 residues > select up 1348 atoms, 1351 bonds, 80 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:282 252 atoms, 234 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:282-322 12618 atoms, 12708 bonds, 738 residues, 1 model selected > color sel #ffffffff > color sel #ff5356ff > show #!1 models > color zone #3.5 near #2 distance 4.04 > show #!3 models > hide #!3 models > color zone #1 near #2 distance 24.24 > hide #!1 models > select 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 30 models selected > cartoon (#!2 & sel) > show #!1 models > hide #!1 models Drag select of 2 residues > select up 77 atoms, 77 bonds, 6 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:323 126 atoms, 108 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:323-328 1386 atoms, 1386 bonds, 108 residues, 1 model selected > color sel #ffffffff > color sel #ff5356ff > show #!1 models > color zone #1 near #2 distance 24.24 > color zone #1 near #2 distance 23.24 > color zone #1 near #2 distance 22.24 > color zone #1 near #2 distance 21.24 > color zone #1 near #2 distance 20.24 > color zone #1 near #2 distance 19.24 > color zone #1 near #2 distance 18.24 > color zone #1 near #2 distance 17.24 > color zone #1 near #2 distance 16.24 > color zone #1 near #2 distance 15.24 > color zone #1 near #2 distance 14.24 > color zone #1 near #2 distance 13.24 > color zone #1 near #2 distance 12.24 > color zone #1 near #2 distance 11.24 > color zone #1 near #2 distance 10.24 > color zone #1 near #2 distance 9.24 > color zone #1 near #2 distance 9.14 > color zone #1 near #2 distance 9.04 > color zone #1 near #2 distance 9.14 > color zone #1 near #2 distance 9.24 > color zone #1 near #2 distance 9.34 > hide #!1 models > show #!1 models > ui mousemode right select > select #1 3 models selected > ui mousemode right ""rotate selected models"" > ui mousemode right select > select clear > hide #!1 models > show #!3 models > hide #!3.1 models > show #!3.1 models > hide #!3.1 models > show #!3.1 models > hide #!3.2 models > hide #!3.3 models > hide #!3.4 models > hide #!3.5 models > hide #!3.6 models > ui tool show ""Segment Map"" > show #!1 models > lighting soft > hide #!3.1 models > show #!3.1 models > vop subtract #1 #3.1 minrms True Opened volume difference as #5, grid size 224,224,224, pixel 4.04, shown at step 1, values float32 Minimum RMS scale factor for ""PA_raw.mrc 0 #3.1"" above level 341.54 is 1 > ui mousemode right select > color zone #5 near #2 distance 24.24 > color zone #5 near #2 distance 16 [Repeated 1 time(s)] > color zone #5 near #2 distance 17 > color zone #5 near #2 distance 18 > color zone #5 near #2 distance 19 > color zone #5 near #2 distance 20 > volume #5 level 197.9 > lighting soft > show #!1 models > hide #!1 models > show #!3.1 models > hide #!3.1 models > hide #!2 models > show #!2 models > hide #!5 models > show #!5 models > hide #!5 models > show #!5 models > color zone #5 near #2 distance 19 > color zone #5 near #2 distance 20 > color zone #5 near #2 distance 21 > color zone #5 near #2 distance 22 > color zone #5 near #2 distance 23 > ui tool show ""Side View"" > hide #!2 models > show #!2 models > volume #5 color #b2b2b2b4 > color zone #5 near #2 distance 23 > color #5 #b2b2b2b4 models > color zone #5 near #2 distance 23 > transparency #5.1 0 > volume #5 color #b2b2b2b4 > hide #!3 models > show #!3 models > hide #!3 models > ui tool show ""Model Panel"" > hide #!5 models Drag select of 2043 residues, 6 pseudobonds > select up 44987 atoms, 45313 bonds, 6 pseudobonds, 2772 residues, 2 models selected > select up 95603 atoms, 96293 bonds, 6 pseudobonds, 5940 residues, 2 models selected Drag select of 5598 residues, 12 pseudobonds Drag select of 3816 residues, 12 pseudobonds > select up 67696 atoms, 68187 bonds, 12 pseudobonds, 4177 residues, 2 models selected > select up 114723 atoms, 115551 bonds, 12 pseudobonds, 7128 residues, 2 models selected > select ~sel 250092 atoms, 251838 bonds, 36 pseudobonds, 15570 residues, 32 models selected > cartoon hide (#!2 & sel) Drag select of 7128 residues, 12 pseudobonds > color zone #5 near sel distance 23 > show #!5 models > hide #!2 models > color zone #5 near sel distance 22 > color zone #5 near sel distance 21 > color zone #5 near sel distance 20 > color zone #5 near sel distance 19 > color zone #5 near sel distance 18 > color zone #5 near sel distance 17 > color zone #5 near sel distance 18 > color zone #5 near sel distance 18.5 [Repeated 1 time(s)] > color zone #5 near sel distance 19.5 > volume splitbyzone #5 Opened volume difference 0 as #6.1, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 1 as #6.2, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 2 as #6.3, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 3 as #6.4, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 4 as #6.5, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 5 as #6.6, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 6 as #6.7, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 7 as #6.8, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 > hide #!6.2 models > hide #!6.3 models > hide #!6.4 models > hide #!6.5 models > hide #!6.6 models > hide #!6.7 models > hide #!6.8 models > show #!5 models > vop subtract #5 #6.1 minrms True Opened volume difference as #7, grid size 224,224,224, pixel 4.04, shown at step 1, values float32 Minimum RMS scale factor for ""volume difference 0 #6.1"" above level 197.87 is 1 > hide #!7 models > show #!5 models > hide #!6 models > hide #!5 models > show #!1 models > color #1 #b2b2b2ff models > show #!5 models > hide #!1 models > hide #!5 models > show #!7 models > color #7 black models > color #7 #b4b4b4ff models > color #7 #b3b3b3ff models > color #7 #b0b0b0ff models > color #7 #b1b1b1ff models > color #7 #b3b3b3ff models > color #7 #b0b0b0ff models > color #7 #b1b1b1ff models > color #7 #b3b3b3ff models > color #7 #b5b5b5ff models > color #7 #b4b4b4ff models > color #7 #b0b0b0ff models > color #7 #b1b1b1ff models > color #7 #b2b1b1ff models > color #7 #b2b2b1ff models > color #7 #b2b2b2ff models > show #!6 models > show #!6.1 models > hide #!6.1 models > show #!6.2 models > show #!6.3 models > show #!6.4 models > show #!6.5 models > show #!6.6 models > show #!6.7 models > show #!6.8 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!6.2 models > hide #!6.3 models > hide #!6.4 models > hide #!6.5 models > hide #!6.6 models > hide #!6.7 models > hide #!6.8 models > hide #!7 models > show #!7 models > show #!2 models > hide #!7 models Drag select of 488 residues, 2 pseudobonds > select up 13811 atoms, 13905 bonds, 2 pseudobonds, 845 residues, 2 models selected > select up 38241 atoms, 38517 bonds, 2 pseudobonds, 2376 residues, 2 models selected > select up 38446 atoms, 38722 bonds, 2 pseudobonds, 2389 residues, 2 models selected > select up 40535 atoms, 40821 bonds, 2 pseudobonds, 2522 residues, 2 models selected > select up 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 2 models selected > select down 40535 atoms, 40821 bonds, 2 pseudobonds, 2522 residues, 2 models selected > select ~sel 324280 atoms, 326568 bonds, 48 pseudobonds, 20176 residues, 51 models selected > cartoon hide (#!2 & sel) Drag select of 2376 residues, 4 pseudobonds > color zone #7 near sel distance 24.24 > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > lighting soft [Repeated 1 time(s)] > lighting simple > lighting soft > lighting full > lighting soft > volume splitbyzone #7 Opened volume difference 0 as #8.1, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 1 as #8.2, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 2 as #8.3, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 3 as #8.4, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 4 as #8.5, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 5 as #8.6, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 6 as #8.7, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 Opened volume difference 7 as #8.8, grid size 224,224,224, pixel 4.04, shown at level 198, step 1, values float32 > hide #!8.1 models > show #!8.1 models > hide #!8.1 models > show #!8.1 models > hide #!8.1 models > show #!8.1 models > hide #!8.1 models > show #!8.1 models > hide #!8.1 models > show #!7 models > hide #!8 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > show #!8 models > hide #!7 models > show #!7 models > show #!8.1 models > hide #!8.2 models > hide #!8.3 models > hide #!8.4 models > hide #!8.5 models > hide #!8.6 models > hide #!8.7 models > hide #!8.8 models > vop subtract #7 #8.1 minrms True Opened volume difference as #9, grid size 224,224,224, pixel 4.04, shown at step 1, values float32 Minimum RMS scale factor for ""volume difference 0 #8.1"" above level 197.87 is 1 > show #!7 models > vop subtract #7 #9 minrms True Opened volume difference as #10, grid size 224,224,224, pixel 4.04, shown at step 1, values float32 Minimum RMS scale factor for ""volume difference #9"" above level 197.87 is 1 > close #9 QWindowsWindow::setGeometry: Unable to set geometry 538x255+711+116 (frame: 574x358+693+31) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 518x191+721+170 (frame: 554x294+703+85) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsContext::windowsProc: No Qt Window found for event 0x2e0 (WM_DPICHANGED), hwnd=0x0x11408ae. QWindowsWindow::setGeometry: Unable to set geometry 519x192+1440+342 (frame: 535x231+1432+311) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1430+288 (frame: 555x319+1422+257) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+715+144 (frame: 575x383+697+59) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+725+198 (frame: 555x319+707+113) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1452+396 (frame: 535x255+1444+365) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1442+342 (frame: 555x319+1434+311) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) > select clear > show #!1 models > hide #!1 models > show #!3 models > show #!3.2 models > show #!3.3 models > show #!3.4 models > show #!3.5 models > show #!3.6 models > hide #!3 models > show #!1 models > color zone #1 near #2 distance 24.24 > hide #!10 models > hide #!1 models > show #!3 models > show #!3.1 models > hide #!3.1 models > show #!3.1 models > show #!1 models > hide #!3 models > hide #!1 models > show #!4 models > hide #!4 models > show #!5 models > color zone #5 near #2 distance 19.5 > color zone #5 near #2 distance 20.5 > color zone #5 near #2 distance 21.5 > lighting soft > show #!1 models > hide #!1 models > show #!4.1 models > camera ortho > hide #!3.1 models > show #!3.1 models > hide #!3.1 models > hide #!3 models > hide #!4 models QWindowsWindow::setGeometry: Unable to set geometry 539x280+863+83 (frame: 575x383+845-2) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+873+137 (frame: 555x319+855+52) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1746+276 (frame: 535x255+1738+245) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1736+222 (frame: 555x319+1728+191) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+868+111 (frame: 575x383+850+26) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+878+165 (frame: 555x319+860+80) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1758+330 (frame: 535x255+1750+299) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1748+276 (frame: 555x319+1740+245) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+874+138 (frame: 575x383+856+53) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+884+192 (frame: 555x319+866+107) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1770+384 (frame: 535x255+1762+353) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1760+330 (frame: 555x319+1752+299) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+880+165 (frame: 575x383+862+80) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+890+219 (frame: 555x319+872+134) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1782+438 (frame: 535x255+1774+407) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1772+384 (frame: 555x319+1764+353) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+886+192 (frame: 575x383+868+107) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+896+246 (frame: 555x319+878+161) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1794+492 (frame: 535x255+1786+461) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1784+438 (frame: 555x319+1776+407) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+892+219 (frame: 575x383+874+134) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+902+273 (frame: 555x319+884+188) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1806+546 (frame: 535x255+1798+515) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1796+492 (frame: 555x319+1788+461) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+898+246 (frame: 575x383+880+161) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+908+300 (frame: 555x319+890+215) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1818+600 (frame: 535x255+1810+569) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1808+546 (frame: 555x319+1800+515) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+904+273 (frame: 575x383+886+188) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+914+327 (frame: 555x319+896+242) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1830+654 (frame: 535x255+1822+623) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1820+600 (frame: 555x319+1812+569) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+910+300 (frame: 575x383+892+215) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+920+354 (frame: 555x319+902+269) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1842+708 (frame: 535x255+1834+677) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1832+654 (frame: 555x319+1824+623) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+916+327 (frame: 575x383+898+242) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+926+381 (frame: 555x319+908+296) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1854+762 (frame: 535x255+1846+731) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1844+708 (frame: 555x319+1836+677) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+922+354 (frame: 575x383+904+269) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+932+408 (frame: 555x319+914+323) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1866+816 (frame: 535x255+1858+785) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1856+762 (frame: 555x319+1848+731) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+928+381 (frame: 575x383+910+296) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+938+435 (frame: 555x319+920+350) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1878+870 (frame: 535x255+1870+839) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1868+816 (frame: 555x319+1860+785) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+934+408 (frame: 575x383+916+323) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+944+462 (frame: 555x319+926+377) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1890+924 (frame: 535x255+1882+893) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1880+870 (frame: 555x319+1872+839) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+940+435 (frame: 575x383+922+350) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+950+489 (frame: 555x319+932+404) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1902+978 (frame: 535x255+1894+947) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1892+924 (frame: 555x319+1884+893) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+946+462 (frame: 575x383+928+377) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+956+516 (frame: 555x319+938+431) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsContext::windowsProc: No Qt Window found for event 0x2e0 (WM_DPICHANGED), hwnd=0x0x4a10e2. QWindowsWindow::setGeometry: Unable to set geometry 519x216+1914+1032 (frame: 535x255+1906+1001) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1904+978 (frame: 555x319+1896+947) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+952+489 (frame: 575x383+934+404) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+962+543 (frame: 555x319+944+458) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1926+1086 (frame: 535x255+1918+1055) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1916+1032 (frame: 555x319+1908+1001) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+958+516 (frame: 575x383+940+431) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+968+570 (frame: 555x319+950+485) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1938+1140 (frame: 535x255+1930+1109) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1928+1086 (frame: 555x319+1920+1055) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+964+543 (frame: 575x383+946+458) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+974+597 (frame: 555x319+956+512) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1950+1194 (frame: 535x255+1942+1163) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1940+1140 (frame: 555x319+1932+1109) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+970+570 (frame: 575x383+952+485) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+980+624 (frame: 555x319+962+539) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1962+1248 (frame: 535x255+1954+1217) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1952+1194 (frame: 555x319+1944+1163) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+976+597 (frame: 575x383+958+512) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+986+651 (frame: 555x319+968+566) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1974+1302 (frame: 535x255+1966+1271) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1964+1248 (frame: 555x319+1956+1217) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+982+624 (frame: 575x383+964+539) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+992+678 (frame: 555x319+974+593) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1986+1356 (frame: 535x255+1978+1325) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1976+1302 (frame: 555x319+1968+1271) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+988+651 (frame: 575x383+970+566) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+998+705 (frame: 555x319+980+620) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+1998+1410 (frame: 535x255+1990+1379) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+1988+1356 (frame: 555x319+1980+1325) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+994+678 (frame: 575x383+976+593) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+1004+732 (frame: 555x319+986+647) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsContext::windowsProc: No Qt Window found for event 0x2e0 (WM_DPICHANGED), hwnd=0x0xe52e22. QWindowsWindow::setGeometry: Unable to set geometry 519x216+2010+1464 (frame: 535x255+2002+1433) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+2000+1410 (frame: 555x319+1992+1379) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+1000+705 (frame: 575x383+982+620) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+1010+759 (frame: 555x319+992+674) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+2022+1518 (frame: 535x255+2014+1487) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 539x280+2012+1464 (frame: 555x319+2004+1433) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+1006+732 (frame: 575x383+988+647) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+1016+786 (frame: 555x319+998+701) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsContext::windowsProc: No Qt Window found for event 0x2e0 (WM_DPICHANGED), hwnd=0x0xa32c1e. QWindowsWindow::setGeometry: Unable to set geometry 519x216+2034+1572 (frame: 535x255+2026+1541) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 539x280+2024+1518 (frame: 555x319+2016+1487) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572877, y=1572900), mintrack=POINT(x=442, y=255))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+1012+759 (frame: 575x383+994+674) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+1022+813 (frame: 555x319+1004+728) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+2046+1626 (frame: 535x255+2038+1595) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 539x280+2036+1572 (frame: 555x319+2028+1541) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572877, y=1572900), mintrack=POINT(x=442, y=255))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+1018+786 (frame: 575x383+1000+701) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+1028+840 (frame: 555x319+1010+755) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+2058+1680 (frame: 535x255+2050+1649) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 539x280+2048+1626 (frame: 555x319+2040+1595) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572877, y=1572900), mintrack=POINT(x=442, y=255))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+1024+813 (frame: 575x383+1006+728) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+1034+867 (frame: 555x319+1016+782) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+2070+1734 (frame: 535x255+2062+1703) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 539x280+2060+1680 (frame: 555x319+2052+1649) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572877, y=1572900), mintrack=POINT(x=442, y=255))) QWindowsWindow::setGeometry: Unable to set geometry 539x280+1030+840 (frame: 575x383+1012+755) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 519x216+1040+894 (frame: 555x319+1022+809) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 519x216+2082+1788 (frame: 535x255+2074+1757) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 539x280+2072+1734 (frame: 555x319+2064+1703) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572877, y=1572900), mintrack=POINT(x=442, y=255))) > ui tool show ""Model Panel"" [Repeated 1 time(s)] > hide #!2 models > hide #!6 models > show #!6 models > show #!6.1 models > hide #!6.1 models > show #!6.2 models > show #!6.3 models > show #!6.4 models > show #!6.5 models > show #!6.6 models > show #!6.7 models > show #!6.8 models > show #!6.1 models > hide #!6.1 models > hide #!8 models > show #!7 models > hide #!7 models > show #!7 models > show #!1 models > color single #1 > hide #!1 models > hide #!6 models > show #!6 models > hide #!6 models > show #!6 models > hide #!7 models > show #!7 models > hide #!6 models > hide #!7 models > show #!7 models > show #!1 models > hide #!1 models > show #!5 models > color single #5 > color #5 #b2b2b2ff models QWindowsWindow::setGeometry: Unable to set geometry 504x494+714+123 (frame: 540x597+696+38) on QWidgetWindow/""QDockWidgetClassWindow"" on ""XGIMI TV"". Resulting geometry: 484x430+724+177 (frame: 520x533+706+92) margins: 18, 85, 18, 18 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=1572897, y=1572964), mintrack=POINT(x=462, y=319))) QWindowsWindow::setGeometry: Unable to set geometry 483x429+1446+354 (frame: 499x468+1438+323) on QWidgetWindow/""QDockWidgetClassWindow"" on ""LG ULTRAGEAR"". Resulting geometry: 503x493+1436+300 (frame: 519x532+1428+269) margins: 8, 31, 8, 8 minimum size: 142x72 maximum size: 524287x524287 MINMAXINFO(maxSize=POINT(x=0, y=0), maxpos=POINT(x=0, y=0), maxtrack=POINT(x=524303, y=524326), mintrack=POINT(x=158, y=111))) > hide #!5 models > show #!5 models > hide #!7 models > show #!7 models > show #!6 models > hide #!6 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!5 models > hide #!7 models > show #!7 models > show #!2 models > hide #!7 models Drag select of 2376 residues, 4 pseudobonds > color zone #7 near sel distance 24.24 > show #!7 models > color zone #7 near sel distance 23.24 > color zone #7 near sel distance 22.24 > color zone #7 near sel distance 21.24 > color zone #7 near sel distance 20.24 > color zone #7 near sel distance 19.24 > color zone #7 near sel distance 18.24 > color zone #7 near sel distance 17.24 > color zone #7 near sel distance 16.24 > color zone #7 near sel distance 15.24 > color zone #7 near sel distance 14.24 > color zone #7 near sel distance 15.24 > color zone #7 near sel distance 16.24 > color zone #7 near sel distance 17.24 > color zone #7 near sel distance 18.24 > color zone #7 near sel distance 19.24 > color zone #7 near sel distance 20.24 > color zone #7 near sel distance 21.24 > color zone #7 near sel distance 22.24 > color zone #7 near sel distance 23.24 > color zone #7 near sel distance 24.24 > color zone #7 near sel distance 25.24 > color zone #7 near sel distance 26.24 > color zone #7 near sel distance 27.24 > color zone #7 near sel distance 28.24 > color zone #7 near sel distance 29.24 > color zone #7 near sel distance 30.24 > color zone #7 near sel distance 31.24 > color zone #7 near sel distance 32.24 > color zone #7 near sel distance 33.24 > color zone #7 near sel distance 34.24 > color zone #7 near sel distance 35.24 > color zone #7 near sel distance 36.24 > color zone #7 near sel distance 35.24 > color zone #7 near sel distance 34.24 > color zone #7 near sel distance 33.24 > color zone #7 near sel distance 32.24 > color zone #7 near sel distance 31.24 > color zone #7 near sel distance 30.24 > color zone #7 near sel distance 29.24 > color zone #7 near sel distance 28.24 > color zone #7 near sel distance 27.24 > color zone #7 near sel distance 26.24 > color zone #7 near sel distance 25.24 > color zone #7 near sel distance 24.24 > color zone #7 near sel distance 23.24 > color zone #7 near sel distance 22.24 > color zone #7 near sel distance 21.24 > color zone #7 near sel distance 20.24 > color zone #7 near sel distance 19.24 > color zone #7 near sel distance 18.24 > color zone #7 near sel distance 17.24 > color zone #7 near sel distance 16.24 > color zone #7 near sel distance 15.24 > color zone #7 near sel distance 14.24 > color zone #7 near sel distance 13.24 > color zone #7 near sel distance 14.24 > color zone #7 near sel distance 15.24 > show #!5 models > select add #1 38241 atoms, 4 pseudobonds, 2376 residues, 4 models selected > select subtract #1 38241 atoms, 4 pseudobonds, 2376 residues, 2 models selected > show #!1 models > lighting soft > hide #!1 models > show #!1 models > hide #!1 models > hide #!7 models > hide #!2 models > volume #5 level 127.6 > open ""C:/Users/kfzr5/OneDrive - Florida State > University/Drp1/volumes/PAorig/cryosparc_P69_J337_volume_map.mrc"" Opened cryosparc_P69_J337_volume_map.mrc as #9, grid size 224,224,224, pixel 4.04, shown at level 0.579, step 1, values float32 > show #!10 models > hide #!10 models > volume #9 level 0.4474 > hide #!9 models > hide #7.1 models > show #!4 models > hide #!4 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > hide #!3.2 models > hide #!3.3 models > hide #!3.4 models > hide #!3.5 models > hide #!3.6 models > hide #!5 models > show #!5 models > hide #!5 models > show #!9 models > volume #9 level 0.3333 > show #!2 models > color zone #9 near sel distance 24.24 > color zone #9 near sel distance 23.24 > color zone #9 near sel distance 22.24 > color zone #9 near sel distance 21.24 > color zone #9 near sel distance 20.24 > color zone #9 near sel distance 19.24 > color zone #9 near sel distance 18.24 > color zone #9 near sel distance 17.24 > color zone #9 near sel distance 16.24 > color zone #9 near sel distance 15.24 > color zone #9 near sel distance 14.24 > color zone #9 near sel distance 13.24 > color zone #9 near sel distance 12.24 > color zone #9 near sel distance 11.24 > color zone #9 near sel distance 12.24 > hide #!2 models > color zone #9 near sel distance 11.24 > color zone #9 near sel distance 12.24 > hide #!9 models > show #!10 models > hide #!10 models > show #!10 models > close #10 > show #!9 models > lighting soft > color zone #9 near #2 distance 12.24 > color zone #9 near #2 distance 13.24 > color zone #9 near #2 distance 14.24 > color zone #9 near #2 distance 15.24 > color zone #9 near #2 distance 16.24 > color zone #9 near #2 distance 17.24 > color zone #9 near #2 distance 18.24 > color zone #9 near #2 distance 19.24 > color zone #9 near #2 distance 20.24 > color zone #9 near #2 distance 21.24 > color zone #9 near #2 distance 22.24 > color zone #9 near #2 distance 23.24 > color zone #9 near #2 distance 24.24 > color zone #9 near #2 distance 25.24 > color zone #9 near #2 distance 26.24 > color zone #9 near #2 distance 27.24 > color zone #9 near #2 distance 28.24 > color zone #9 near #2 distance 29.24 > color zone #9 near #2 distance 30.24 > color zone #9 near #2 distance 31.24 > color zone #9 near #2 distance 32.24 > color zone #9 near #2 distance 20 [Repeated 1 time(s)] > color zone #9 near #2 distance 14 [Repeated 1 time(s)] > hide #!9 models > show #!2 models > hide #!2 models > show #!9 models > color zone #9 near #2 distance 22 [Repeated 1 time(s)] > color zone #9 near #2 distance 23 > color zone #9 near #2 distance 26 [Repeated 1 time(s)] > volume splitbyzone #9 Opened cryosparc_P69_J337_volume_map.mrc 0 as #10.1, grid size 224,224,224, pixel 4.04, shown at level 0.333, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc 1 as #10.2, grid size 224,224,224, pixel 4.04, shown at level 0.333, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc 2 as #10.3, grid size 224,224,224, pixel 4.04, shown at level 0.333, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc 3 as #10.4, grid size 224,224,224, pixel 4.04, shown at level 0.333, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc 4 as #10.5, grid size 224,224,224, pixel 4.04, shown at level 0.333, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc 5 as #10.6, grid size 224,224,224, pixel 4.04, shown at level 0.333, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc 6 as #10.7, grid size 224,224,224, pixel 4.04, shown at level 0.333, step 1, values float32 Opened cryosparc_P69_J337_volume_map.mrc 7 as #10.8, grid size 224,224,224, pixel 4.04, shown at level 0.333, step 1, values float32 > hide #!10.2 models > hide #!10.3 models > hide #!10.4 models > hide #!10.5 models > hide #!10.6 models > hide #!10.7 models > hide #!10.8 models > show #!9 models > vop subtract #9 #10.1 minrms True Opened volume difference as #11, grid size 224,224,224, pixel 4.04, shown at step 1, values float32 Minimum RMS scale factor for ""cryosparc_P69_J337_volume_map.mrc 0 #10.1"" above level 0.33332 is 1 > close #10 > color zone #11 near #2 distance 24.24 > color #11 #b2cc99ff models > color #11 #b2b2b2ff models > color zone #11 near sel distance 24.24 > color zone #11 near sel distance 14 [Repeated 1 time(s)] > color zone #11 near sel distance 13 > lighting soft [Repeated 1 time(s)] > volume #11 level 0.3493 > show #!2 models > volume #11 level 0.311 > volume #11 level 0.3525 > lighting simple > lighting soft > set bgColor white > hide #!11 models > show #!11 models > hide #!11 models > show #!11 models > color zone #11 near sel distance 13 [Repeated 3 time(s)] > volume #11 level 0.3142 > volume #11 level 0.2982 > color zone #11 near sel distance 13 > lighting soft > hide #!2 models > volume #11 level 0.3876 > color zone #11 near sel distance 13 > volume #11 level 0.2759 > color zone #11 near sel distance 13 [Repeated 1 time(s)] > color single #11 > show #!2 models > color #11 #b2b2b2b2 models > select clear > lighting simple > lighting soft > lighting full > lighting simple No atoms selected for color zoning > hide #!11 models Drag select of 2207 residues, 2 pseudobonds > color zone #11 near sel distance 13 > show #!11 models > hide #!2 models > color zone #11 near sel distance 13 > color single #11 > show #!2 models > hide #!2 models > color #11 #b2b2b2ff models > color zone #11 near sel distance 13 > color single #11 > show #!2 models > select 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 74 models selected > cartoon (#!2 & sel) > hide #!11 models > show #!11 models > hide #!11 models Drag select of 23 residues, 1 pseudobonds > select up 972 atoms, 976 bonds, 1 pseudobond, 61 residues, 2 models selected > select up 20464 atoms, 20608 bonds, 1 pseudobond, 1274 residues, 2 models selected > select down 972 atoms, 976 bonds, 1 pseudobond, 61 residues, 2 models selected Drag select of 37 residues > select up 1298 atoms, 1304 bonds, 82 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499 252 atoms, 252 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499-638 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected > color zone #11 near sel distance 13 > select add #11 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 4 models selected > select subtract #11 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected > select add #11 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 4 models selected > select subtract #11 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected > select add #11 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 4 models selected > select subtract #11 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected > select add #11 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 4 models selected > select subtract #11 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected > show #!11 models > hide #!2 models > color #11.1 #b2b2b2b2 > color zone #11 near sel distance 13 > volume #11 level 0.2408 > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > color zone #11 near sel distance 12 > color zone #11 near sel distance 11 > color zone #11 near sel distance 10 > color zone #11 near sel distance 9.9 > color zone #11 near sel distance 9.8 > color zone #11 near sel distance 9.7 > color zone #11 near sel distance 9.6 > color zone #11 near sel distance 9.5 > color zone #11 near sel distance 9.4 > color zone #11 near sel distance 9.3 > color zone #11 near sel distance 9.2 > color zone #11 near sel distance 9.1 > color zone #11 near sel distance 9 > color zone #11 near sel distance 8.9 > color zone #11 near sel distance 8.8 > color zone #11 near sel distance 8.7 > color zone #11 near sel distance 8.6 > color zone #11 near sel distance 8.5 > color zone #11 near sel distance 8.4 > color zone #11 near sel distance 8.3 > color zone #11 near sel distance 8.2 > color zone #11 near sel distance 8.1 > color zone #11 near sel distance 8 > color zone #11 near sel distance 7.9 > color zone #11 near sel distance 7.8 > color zone #11 near sel distance 7.7 > color zone #11 near sel distance 7.6 > color zone #11 near sel distance 7.5 > color zone #11 near sel distance 7.4 > color zone #11 near sel distance 7.3 > volume #11 level 0.3461 > volume #11 level 0.4865 > color zone #11 near sel distance 7.3 [Repeated 1 time(s)] > color zone #11 near sel distance 7.2 > color zone #11 near sel distance 7.1 > color zone #11 near sel distance 7 > color zone #11 near sel distance 6.9 > color zone #11 near sel distance 6.8 > color zone #11 near sel distance 6.7 > color zone #11 near sel distance 6.6 > color zone #11 near sel distance 6.5 > color zone #11 near sel distance 6.4 > color zone #11 near sel distance 6.3 > color zone #11 near sel distance 6.2 > color zone #11 near sel distance 6.1 > color zone #11 near sel distance 6 > color zone #11 near sel distance 5.9 > color zone #11 near sel distance 5.8 > color zone #11 near sel distance 5.7 > color zone #11 near sel distance 5.6 > color zone #11 near sel distance 5.5 > color zone #11 near sel distance 5.4 > color zone #11 near sel distance 5.3 > color zone #11 near sel distance 5.2 > color zone #11 near sel distance 5.1 > color zone #11 near sel distance 5 [Repeated 3 time(s)] > show #!1 models > lighting soft > color #1 #b2b2b296 models > lighting soft > lighting simple > hide #!1 models > show #!9 models > color single #9 > color #9 #b2b2b296 models > lighting soft > lighting full > lighting simple > volume #9 level 0.2504 > volume #9 level 0.2331 > show #!2 models > volume #9 level 0.2676 > select clear > color single #9 > hide #!11 models > volume #9 level 0.2469 > volume #9 level 0.1812 > hide #!2 models > show #!11 models > volume #9 color #b2b2b2 > volume #9 level 0.2192 > volume #9 level 0.24 > volume #9 level 0.2469 > lighting soft [Repeated 8 time(s)] > lighting simple > lighting soft > show #!2 models > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499 252 atoms, 252 bonds, 18 residues, 1 model selected > select /A,D-E,H-I,L-M,P,c,i,U,X,Q,T,Y,b,d,j:499-638 11682 atoms, 11736 bonds, 18 pseudobonds, 738 residues, 2 models selected > color zone #11 near sel distance 5 > volume #11 level 0.4163 > volume #11 level 0.3206 > color zone #11 near sel distance 5.1 > color zone #11 near sel distance 5.2 > color zone #11 near sel distance 5.3 > color zone #11 near sel distance 5.4 > color zone #11 near sel distance 5.5 > color zone #11 near sel distance 5.6 > color zone #11 near sel distance 5.7 > color zone #11 near sel distance 5.8 > color zone #11 near sel distance 5.9 > color zone #11 near sel distance 6 > color zone #11 near sel distance 6.1 > color zone #11 near sel distance 6.2 > color zone #11 near sel distance 6.3 > color zone #11 near sel distance 6.4 > color zone #11 near sel distance 6.5 > color zone #11 near sel distance 6.6 > color zone #11 near sel distance 6.7 > color zone #11 near sel distance 6.8 > color zone #11 near sel distance 6.9 [Repeated 1 time(s)] > volume #11 level 0.2184 > color zone #9 near sel distance 24.24 > lighting soft > hide #!2 models > color zone #9 near sel distance 23.24 > color zone #9 near sel distance 22.24 > color zone #9 near sel distance 21.24 > color zone #9 near sel distance 20.24 > color zone #9 near sel distance 19.24 > color zone #9 near sel distance 18.24 > color zone #9 near sel distance 17.24 > color zone #9 near sel distance 16.24 > color zone #9 near sel distance 15.24 > color zone #9 near sel distance 14.24 > color zone #9 near sel distance 13.24 > color zone #9 near sel distance 12.24 > color zone #9 near sel distance 11.24 > color zone #9 near sel distance 10.24 > color zone #9 near sel distance 9.24 > color zone #9 near sel distance 9.14 > color zone #9 near sel distance 9.04 > show #!2 models > select ~sel 353133 atoms, 355617 bonds, 36 pseudobonds, 21960 residues, 74 models selected > cartoon hide (#!2 & sel) > hide #!9 models > show #!9 models > hide #!9 models > ui mousemode right select Drag select of 41 residues, 1 pseudobonds > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.99985,-0.0010658,0.01718,-6.6022,0.0012236,0.99996,-0.0091774,3.1387,-0.01717,0.0091971,0.99981,5.8949 > view matrix models > #2,0.99984,0.00043631,0.01773,-7.4815,-0.00058116,0.99997,0.0081657,-3.052,-0.017726,-0.0081747,0.99981,13.797 > show #!9 models > view matrix models > #2,0.99948,0.023561,0.022146,-19.206,-0.0219,0.99713,-0.072493,43.972,-0.023791,0.07197,0.99712,-16.6 > undo [Repeated 4 time(s)] > select clear [Repeated 1 time(s)] No atoms selected for color zoning [Repeated 2 time(s)] > hide #!9 models Drag select of 41 residues, 1 pseudobonds > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!9 models > cd ""C:/Users/kfzr5/OneDrive - Florida State University/data"" Current working directory is: C:\Users\kfzr5\OneDrive - Florida State University\data > save ""C:/Users/kfzr5/OneDrive - Florida State > University/data/20230911_lattice.cxs"" ——— End of log from Mon Sep 11 08:12:07 2023 ——— opened ChimeraX session > ui tool show ""Side View"" > show #!1 models > hide #!1 models Drag select of 738 residues, 18 pseudobonds > select up 184176 atoms, 185472 bonds, 18 pseudobonds, 11466 residues, 2 models selected > select up 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 2 models selected > select 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 72 models selected > cartoon style (#!2 & sel) modeHelix tube sides 20 > cartoon (#!2 & sel) > show #!1 models > color #1 #b2b2b2ff models > select clear > save ""C:/Users/kfzr5/OneDrive - Florida State > University/data/20230911_lattice.cxs"" ——— End of log from Sun Oct 8 12:28:18 2023 ——— opened ChimeraX session > save ""C:/Users/kfzr5/OneDrive - Florida State > University/data/20230911_lattice.cxs"" ——— End of log from Sun Oct 8 14:12:37 2023 ——— opened ChimeraX session > hide #!1 models Drag select of 2053 residues, 7 pseudobonds > select up 38795 atoms, 39071 bonds, 7 pseudobonds, 2387 residues, 2 models selected > select up 76482 atoms, 77034 bonds, 7 pseudobonds, 4752 residues, 2 models selected > select up 76892 atoms, 77444 bonds, 7 pseudobonds, 4778 residues, 2 models selected > select up 81070 atoms, 81642 bonds, 7 pseudobonds, 5044 residues, 2 models selected > select up 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 2 models selected > select down 81070 atoms, 81642 bonds, 7 pseudobonds, 5044 residues, 2 models selected > select ~sel 283745 atoms, 285747 bonds, 42 pseudobonds, 17654 residues, 72 models selected > cartoon hide (#!2 & sel) > show #!1 models > ui tool show ""Color Zone"" > color zone #1 near #2 distance 24.24 > hide #!1 models Drag select of 5396 residues, 12 pseudobonds > color zone #1 near #2 distance 24.24 > show #!1 models > color zone #1 near sel distance 24.24 > color zone #1 near sel distance 23.24 > color zone #1 near sel distance 22.24 > color zone #1 near sel distance 21.24 > color zone #1 near sel distance 20.24 > color zone #1 near sel distance 19.24 > color zone #1 near sel distance 18.24 > color zone #1 near sel distance 17.24 > color zone #1 near sel distance 16.24 > color zone #1 near sel distance 15.24 > color zone #1 near sel distance 14.24 > color zone #1 near sel distance 13.24 > color zone #1 near sel distance 12.24 > ui tool show ""Model Panel"" > ui tool show ""Side View"" > volume splitbyzone #1 Opened PA_raw.mrc 0 as #10.1, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 1 as #10.2, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 2 as #10.3, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 3 as #10.4, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 4 as #10.5, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 5 as #10.6, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 6 as #10.7, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 7 as #10.8, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 > hide #!10.2 models > hide #!10.8 models > hide #!10.7 models > hide #!10.6 models > hide #!10.5 models > hide #!10.4 models > hide #!10.3 models > show #!1 models > vop subtract #1 #10.1 minrms True Opened volume difference as #12, grid size 224,224,224, pixel 4.04, shown at step 1, values float32 Minimum RMS scale factor for ""PA_raw.mrc 0 #10.1"" above level 327.6 is 1 > color #12 black models > color #12 #acacacff models > color #12 #b3b3b3ff models > color #12 #b2b3b3ff models > color #12 #b2b2b3ff models > color #12 #b2b2b2ff models > hide #!10 models > hide #!12 models > show #!10 models > show #!10.1 models > hide #!10.1 models > close #10 > show #!1 models > hide #!1 models > show #!11 models > show #!3 models > hide #!3 models > ui tool show ""Side View"" [Repeated 1 time(s)] > show #!3 models > hide #!11 models > show #!3.1 models > hide #!3.1 models > close #3 > show #!4 models > hide #!2 models > hide #!4 models > show #!4 models > hide #!4.1 models > show #!4.1 models > close #4 > show #!5 models > hide #!5 models > show #!6 models > hide #!6 models > close #6 > show #!7 models > show #7.1 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > close #7 > show #!8 models > show #!8.1 models > hide #!8.1 models > show #!8.1 models > close #8 > show #!11 models > hide #!11 models > show #!12 models > save ""C:/Users/kfzr5/OneDrive - Florida State > University/data/20230911_lattice.cxs"" ——— End of log from Sun Oct 8 14:18:16 2023 ——— opened ChimeraX session > show #!1 models > hide #!12 models > ui tool show ""Color Zone"" > color zone #1 near #2 distance 4.04 > volume splitbyzone #1 Opened PA_raw.mrc 0 as #3.1, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 1 as #3.2, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 2 as #3.3, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 3 as #3.4, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 4 as #3.5, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 5 as #3.6, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 6 as #3.7, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 Opened PA_raw.mrc 7 as #3.8, grid size 224,224,224, pixel 4.04, shown at level 328, step 1, values float32 > close #3 > show #!1 models > color single #1 > turn y 2 180 > turn y 2 90 > ui tool show ""Side View"" > lighting soft > camera ortho > turn y 2 90 > turn y 2 1 [Repeated 13 time(s)] > turn y -2 1 [Repeated 5 time(s)] > turn 1 360 Expected an axis vector or a keyword > turn y 1 360 > volume #1 level 302.8 > view name main > ui tool show Log > lighting shadows true intensity 0.5 > lighting soft > set bgColor white > lighting flat > volume #1 level 389.3 > lighting soft > turn y 360 > turn y 180 [Repeated 1 time(s)] > view name main > volume #1 level 321.3 > view name tetramer > view main > view tetramer 200 > volume #1 level 445 > volume #1 level 339.9 > view name focus > view main > view tetramer 200 > view focus 200 > view main > wait wait requires a frame count argument unless motion is in progress > view tetramer 200 > view focus 200 > view main [Repeated 2 time(s)] > wait wait requires a frame count argument unless motion is in progress > view tetramer 200 > view focus 200 > view main > wait wait requires a frame count argument unless motion is in progress > view tetramer 200 > view focus 200 > view main > wait wait requires a frame count argument unless motion is in progress > view tetramer 200 > wait 200 > view focus 200 > view main > wait wait requires a frame count argument unless motion is in progress > view tetramer 200 > wait 200 > view focus 50 > view main [Repeated 1 time(s)] > turn y 180 [Repeated 1 time(s)] > turn y 1 [Repeated 2 time(s)] > view name main > view main > wait wait requires a frame count argument unless motion is in progress > view tetramer 200 > wait 200 > view focus 50 > view main > wait wait requires a frame count argument unless motion is in progress > view tetramer 200 > wait 200 > view focus 50 > clip off > turn y 180 > camera ortho > turn y 180 > view name front > view front 10 > wait 10 > view tetramer 200 > wait 200 > view focus 50 > view name focus > view front 10 > wait 10 > view tetramer 200 > wait 200 > view focus 50 > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!1 models Drag select of 1816 residues, 1 pseudobonds > select up 33349 atoms, 33580 bonds, 1 pseudobond, 2062 residues, 2 models selected > select up 57815 atoms, 58228 bonds, 1 pseudobond, 3598 residues, 2 models selected > select up 58130 atoms, 58544 bonds, 1 pseudobond, 3618 residues, 2 models selected > select up 60802 atoms, 61231 bonds, 1 pseudobond, 3783 residues, 2 models selected > select up 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 2 models selected > select down 60802 atoms, 61231 bonds, 1 pseudobond, 3783 residues, 2 models selected > cartoon style (#!2 & sel) xsection oval modeHelix default > show #!1 models > hide #!2 models > movie record > video view front 10; wait 10; turn y 3 120; wait 120; view tetramer 200; > wait 200; view focus 50; hide #1; show #2 models; movie encode tetramer.mp4 Unknown command: video view front 10; wait 10; turn y 3 120; wait 120; view tetramer 200; wait 200; view focus 50; hide #1; show #2 models; movie encode tetramer.mp4 > movie record Already recording a movie > movie stop > movie record > view front 10 > wait 10 > turn y 3 120 > wait 120 > view tetramer 200 > wait 200 > view focus 50 > hide #1 > show #2 models > movie encode tetramer.mp4 Movie saved to tetramer.mp4 > movie record > view front 10 > wait 10 > turn y 3 120 > wait 120 > view tetramer 200 > wait 200 > view focus 50 > wait 50 > hide #1 > show #2 models > movie encode tetramer.mp4 Movie saved to tetramer.mp4 > show #!1 models > hide #!2 models > view front > clip off > show #!2 models > hide #!1 models > show #!1 models > show #1.1 models > hide #!2 models > view front > movie record > view front 10 > wait 10 > turn y 3 120 > wait 120 > view tetramer 200 > wait 200 > view focus 50 > wait 50 > hide #1 > show #2 models > wait 60 > movie encode tetramer.mp4 Movie saved to tetramer.mp4 > select clear > show #1.1 models > view front > hide #!2 models > movie record > view front 10 > wait 10 > turn y 3 120 > wait 120 > view tetramer 60 > wait 90 > view focus 40 > wait 60 > hide #1 > show #2 models > wait 60 > movie encode tetramer.mp4 Movie saved to tetramer.mp4 > show #1.1 models > hide #!1 models > show #!1 models > hide #!2 models > volume #1 level 234.8 > volume #1 level 278.1 > volume #1 level 185.3 > volume #1 level 284.2 > volume #1 level 377 > hide #!1 models > show #!9 models > volume #9 level 0.2999 > volume #9 level 0.3918 > volume #9 level 0.3953 > volume #9 level 0.5296 > show #!1 models > hide #!9 models > view name stalkslice > view stalkslice > view name stalksliceG > clip off > turn y 180 [Repeated 1 time(s)] > view name filament > view filament > wait wait requires a frame count argument unless motion is in progress > view stalkslice 60 > wait 60 > view stalksliceG 20 > wait 20 > view filament > wait 20 > view stalkslice 60 > wait 60 > view stalksliceG 20 > wait 20 > view filament > view stalkslice 60 > wait 60 > view stalksliceG 20 > wait 20 > view filament > view stalkslice 120 > wait 120 > view stalksliceG 20 > wait 20 > view filament > view stalkslice 120 > wait 120 > view stalksliceG 20 > wait 20 > view front > wait 10 > view filament 60 > wait 60 > view stalkslice 120 > wait 120 > view stalksliceG 20 > wait 20 > view front > wait 10 > view filament 60 > wait 60 > view stalkslice 120 > wait 180 > view stalksliceG 20 > wait 20 > view front > wait 10 > view filament 60 > wait 60 > view stalkslice 200 > wait 180 > view stalksliceG 20 > wait 20 > view front > wait 10 > view filament 60 > wait 60 > view stalkslice 200 > wait 300 > view stalksliceG 20 > wait 20 > view front > wait 10 > view filament 60 > wait 80 > view stalkslice 200 > wait 300 > view stalksliceG 20 > wait 20 > view front > wait 10 > view filament 60 > wait 80 > view stalkslice 300 > wait 300 > view stalksliceG 20 > wait 20 > view front > wait 10 > view filament 60 > wait > view stalkslice 300 > wait 300 > view stalksliceG 20 > wait 20 > view front > wait 10 > view filament 60 > wait > view stalkslice 60 > wait 60 > view stalksliceG 20 > wait 20 > view front > wait 10 > view filament 60 > wait 60 > view stalkslice 60 > wait 60 > view stalksliceG 20 > wait 20 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 60 > view stalkslice 60 > wait 60 > view stalksliceG 20 > wait 20 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 60 > wait wait requires a frame count argument unless motion is in progress > view stalkslice 60 > wait 60 > view stalksliceG 20 > wait 20 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > view stalkslice 60 > wait 60 > view stalksliceG 20 > wait 20 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > view stalkslice 60 > wait 60 > view stalksliceG 20 > wait 20 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > view stalkslice 60 > wait 120 > view stalksliceG 20 > wait 20 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > view stalkslice 60 > wait 120 > view stalksliceG 60 > view front 10 > wait 10 > turn y 3 120 > wait 120 > view tetramer 60 > wait 90 > view focus 40 > wait 60 > hide #1 > show #2 models > wait 60 > show #!1 models > show #1.1 models > hide #!2 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > view stalkslice 60 > wait 120 > view stalksliceG 60 > view stalkfocus Expected an objects specifier or a view name or a keyword > view stalkslice > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > view stalkslice 60 > wait 120 > show #2 models > hide #1 > wait 60 > show #1 > view stalksliceG 60 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 > wait 60 > show #1 > view stalksliceG 60 > hide #1 > show #!1 models > show #1.1 models > hide #!2 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 > wait 60 > show #1.1 > view stalksliceG 60 > hide #1 > show #!1 models > show #1.1 models > hide #!2 models > hide #2.1 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 > wait 60 > volume show #1.1; view stalksliceG 60; hide #1 Expected a keyword > show #1.1 models > hide #!2 models > hide #2.1 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 > wait 60 > volume #1.1 show No volumes specified > show #!1 models > hide #!2 models > show #1.1 models > hide #2.1 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 > wait 60 > volume #1 show > view stalksliceG 60 > hide #1 > volume show > hide #!1 models > hide #2.1 models > hide #!2 models > hide #!5 models > hide #!9 models > hide #!11 models > hide #!12 models > show #!1 models > show #1.1 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 > wait 60 > volume show #1; view stalksliceG 60; hide #1 Expected a keyword > show #!1 models > show #1.1 models > hide #!2 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 > wait 60 > show #1.1 models > view stalksliceG 60 > hide #1 > show #1.1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1.1 models > hide #!1 models > show #1.1 models > hide #!1.1 models > hide #!1 models > lookingglass Failed to initialize HoloPlay: Interprocess pipe broken Did not find any connected LookingGlass display Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\looking_glass\lookingglass.py"", line 394, in event self._render() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\looking_glass\lookingglass.py"", line 406, in _render mvwin = r.use_shared_context(self) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 542, in use_shared_context self.make_current() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 491, in make_current return self._opengl_context.make_current() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 112, in make_current raise OpenGLError(""Could not make graphics context current"") chimerax.graphics.opengl.OpenGLError: Could not make graphics context current chimerax.graphics.opengl.OpenGLError: Could not make graphics context current File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 112, in make_current raise OpenGLError(""Could not make graphics context current"") See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\looking_glass\lookingglass.py"", line 394, in event self._render() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\looking_glass\lookingglass.py"", line 406, in _render mvwin = r.use_shared_context(self) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 542, in use_shared_context self.make_current() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 491, in make_current return self._opengl_context.make_current() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 112, in make_current raise OpenGLError(""Could not make graphics context current"") chimerax.graphics.opengl.OpenGLError: Could not make graphics context current chimerax.graphics.opengl.OpenGLError: Could not make graphics context current File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 112, in make_current raise OpenGLError(""Could not make graphics context current"") See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\triggerset.py"", line 138, in invoke return self._func(self._name, data) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\looking_glass\lookingglass.py"", line 398, in _frame_drawn self._render() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\looking_glass\lookingglass.py"", line 406, in _render mvwin = r.use_shared_context(self) File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 542, in use_shared_context self.make_current() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 491, in make_current return self._opengl_context.make_current() File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 112, in make_current raise OpenGLError(""Could not make graphics context current"") chimerax.graphics.opengl.OpenGLError: Could not make graphics context current Error processing trigger ""frame drawn"": chimerax.graphics.opengl.OpenGLError: Could not make graphics context current File ""C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\graphics\opengl.py"", line 112, in make_current raise OpenGLError(""Could not make graphics context current"") See log for complete Python traceback. > show #1.1 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > show #1.1 models > wait wait requires a frame count argument unless motion is in progress > view stalksliceG 60 > hide #1 > show #1.1 models > hide #!1 models > hide #!2 models > show #!1 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > hide #1 > show #1.1 models > wait wait requires a frame count argument unless motion is in progress > view stalksliceG 60 > hide #1 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > hide #1 > show #1.1 models > wait wait requires a frame count argument unless motion is in progress > view stalksliceG 60 > wait > hide #1 > show #!1 models > hide #!2 models > show #1.1 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > hide #1 > show #1.1 models > wait wait requires a frame count argument unless motion is in progress > view stalksliceG 60 > wait > hide #1 > show #!1 models > hide #!1 models > save ""C:/Users/kfzr5/OneDrive - Florida State > University/data/20230911_lattice.cxs"" > show #!1 models > show #1.1 models > view stalksliceG > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > view name stalksliceG > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > hide #1 > show #1.1 models > wait wait requires a frame count argument unless motion is in progress > view stalksliceG 60 > wait > hide #1 > show #!1 models > hide #!2 models > show #1.1 models > movie record > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > hide #1 > show #1.1 models > wait wait requires a frame count argument unless motion is in progress > view stalksliceG 60 > wait > hide #1 > movie encode stalk.mp4 Movie saved to stalk.mp4 > view stalkslice > show #!1 models > show #1.1 models > clip near -0.2 [Repeated 17 time(s)] > clip far 0.2 [Repeated 7 time(s)] > view name stalkslice > movie record > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > hide #1 > show #1.1 models > wait wait requires a frame count argument unless motion is in progress > view stalksliceG 60 > wait > hide #1 > movie encode stalk.mp4 Movie saved to stalk.mp4 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > hide #1 > show #1.1 models > wait wait requires a frame count argument unless motion is in progress > view stalksliceG 60 > wait > hide #1 > view stalksliceG > show #!1 models > show #1.1 models > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > hide #1 > show #1.1 models > wait wait requires a frame count argument unless motion is in progress > view stalksliceG 60 > wait > hide #1 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > hide #1 > show #1.1 models > wait wait requires a frame count argument unless motion is in progress > view stalksliceG 60 > wait 60 > hide #1 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 90 > view stalkslice 60 > wait 90 > show #2 models > hide #1 models > wait 60 > hide #1 > show #1.1 models > wait 20 > view stalksliceG 60 > wait 60 > hide #1 > view front > show #!1 models > hide #!2 models > show #1.1 models > view name filament > view name stalkfocus > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 60 > view stalkfocus 60 > wait 60 > view name middle > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 60 > view middle 60 > wait 60 > view stalkfocus 60 > wait 60 > view front60; wait 60; view filament 60; wait 60; view middle 60; wait 60; > view stalkfocus 60; wait 60 Expected an objects specifier or a view name or a keyword > view front 60 > wait 60 > view filament 60 > wait 60 > view middle 60 > wait 60 > view stalkfocus 60 > wait 60 > view front > wait 60 > view filament 60 > wait 80 > view middle 60 > wait 80 > view stalkfocus 60 > view front > clip off > view name front > view name filament > view front > wait 60 > view filament 60 > wait 80 > view middle 60 > wait 80 > view stalkfocus 60 > view front > wait 60 > view filament 60 > wait 80 > view middle 60 > wait 80 > view stalkfocus 60 > view front > wait 30 > view filament 60 > wait 80 > view middle 60 > wait 80 > view stalkfocus 60 > view middle > view front > wait 30 > view filament 60 > wait 80 > view middle 60 > wait 80 > view stalkfocus 60 > view front > lighting soft > view name front > view filament > view name filament > view front > wait 30 > view filament 60 > wait 80 > view middle 60 > wait 80 > view stalkfocus 60 > view front > wait 30 > view filament 60 > wait 80 > view middle 90 > wait 90 > view stalkfocus 60 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 60 > wait 80 > view middle 90 > wait 90 > view stalkfocus 60 > view front 20 > wait 20 > view filament 60 > wait 80 > view middle 90 > wait 90 > view stalkfocus 60 > view front 20 > wait 20 > view filament 60 > wait 80 > view middle 90 > wait 90 > view stalkfocus 60 > show #!2 models > hide #!1 models > view front > show #!1 models > hide #!1 models > select 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 12 models selected > cartoon (#!2 & sel) Drag select of 945 residues, 2 pseudobonds > select up 25499 atoms, 25679 bonds, 2 pseudobonds, 1568 residues, 2 models selected > select up 74643 atoms, 75184 bonds, 2 pseudobonds, 4640 residues, 2 models selected > select down 25499 atoms, 25679 bonds, 2 pseudobonds, 1568 residues, 2 models selected Drag select of 1457 residues, 4 pseudobonds > select up 33123 atoms, 33357 bonds, 4 pseudobonds, 2041 residues, 2 models selected > select up 76482 atoms, 77034 bonds, 4 pseudobonds, 4752 residues, 2 models selected Alignment identifier is 1 Alignment identifier is 2 Drag select of 31 residues > select up 1543 atoms, 1553 bonds, 93 residues, 1 model selected > select /B,g,a,f:363 28 atoms, 24 bonds, 4 residues, 1 model selected > select /B,g,a,f:363-492 8480 atoms, 8552 bonds, 520 residues, 1 model selected > select > /B,g,a,f:4-18,38-46,104-119,162-175,191-193,195-203,217-219,227-230,249-254,258-272,274-280,282-298,301-320,329-349,363-380,389-400,411-450,452-456,458-492,499-520,632-634,639-690,695-699,704-734 25332 atoms, 25380 bonds, 1528 residues, 1 model selected Drag select of 44 residues > select up 2422 atoms, 2437 bonds, 145 residues, 1 model selected > select /A,i,b,d:363 28 atoms, 24 bonds, 4 residues, 1 model selected > select /A,i,b,d:363-674 14016 atoms, 14132 bonds, 4 pseudobonds, 852 residues, 2 models selected Drag select of 2655 residues, 9 pseudobonds > show #!1 models > ui tool show ""Color Zone"" > color zone #1 near sel distance 4.04 > color zone #1 near sel distance 4.14 > color zone #1 near sel distance 4.24 > color zone #1 near sel distance 4.34 > color zone #1 near sel distance 4.44 > color zone #1 near sel distance 4.54 > color zone #1 near sel distance 4.64 > color zone #1 near sel distance 4.74 > color zone #1 near sel distance 4.84 > color zone #1 near sel distance 4.94 > color zone #1 near sel distance 5.04 > color zone #1 near sel distance 5.14 > color zone #1 near sel distance 5.24 > color zone #1 near sel distance 5.34 > color zone #1 near sel distance 5.44 > color zone #1 near sel distance 5.54 > color zone #1 near sel distance 5.64 > color zone #1 near sel distance 5.74 > color zone #1 near sel distance 5.84 > color zone #1 near sel distance 5.94 > color zone #1 near sel distance 6.04 > color zone #1 near sel distance 6.14 > color zone #1 near sel distance 6.24 > color zone #1 near sel distance 6.34 > color zone #1 near sel distance 6.44 > color zone #1 near sel distance 6.54 > color zone #1 near sel distance 6.64 > color zone #1 near sel distance 6.74 > color zone #1 near sel distance 6.84 > color zone #1 near sel distance 6.94 > color zone #1 near sel distance 7.04 > color zone #1 near sel distance 7.14 > color zone #1 near sel distance 7.24 > color zone #1 near sel distance 7.34 > color zone #1 near sel distance 7.44 > color zone #1 near sel distance 7.54 > color zone #1 near sel distance 7.64 > color zone #1 near sel distance 7.74 > color zone #1 near sel distance 7.84 > color zone #1 near sel distance 7.94 > color zone #1 near sel distance 8.04 > color zone #1 near sel distance 8.14 > color zone #1 near sel distance 8.24 > color zone #1 near sel distance 8.34 > color zone #1 near sel distance 8.44 > color zone #1 near sel distance 8.54 > color zone #1 near sel distance 8.64 > color zone #1 near sel distance 8.74 > color zone #1 near sel distance 8.84 > color zone #1 near sel distance 8.94 > color zone #1 near sel distance 9.04 > color zone #1 near sel distance 9.14 > color zone #1 near sel distance 9.24 > color zone #1 near sel distance 9.34 > color zone #1 near sel distance 9.44 > color zone #1 near sel distance 9.54 > color zone #1 near sel distance 9.64 > color zone #1 near sel distance 9.74 > color zone #1 near sel distance 9.84 > color zone #1 near sel distance 9.94 > color zone #1 near sel distance 10.04 > color zone #1 near sel distance 11.04 > color zone #1 near sel distance 12.04 > color zone #1 near sel distance 13.04 > color zone #1 near sel distance 14.04 > color zone #1 near sel distance 15.04 > color zone #1 near sel distance 16.04 > color zone #1 near sel distance 17.04 > color zone #1 near sel distance 18.04 > color zone #1 near sel distance 17.04 > color zone #1 near sel distance 16.04 > hide #!1 models Drag select of 1875 residues, 6 pseudobonds > select up 37965 atoms, 38232 bonds, 6 pseudobonds, 2330 residues, 2 models selected > select up 76482 atoms, 77034 bonds, 6 pseudobonds, 4752 residues, 2 models selected > select up 76892 atoms, 77444 bonds, 6 pseudobonds, 4778 residues, 2 models selected > select up 81070 atoms, 81642 bonds, 6 pseudobonds, 5044 residues, 2 models selected > select up 364815 atoms, 367389 bonds, 54 pseudobonds, 22698 residues, 2 models selected > select down 81070 atoms, 81642 bonds, 6 pseudobonds, 5044 residues, 2 models selected > select ~sel 283745 atoms, 285747 bonds, 42 pseudobonds, 17654 residues, 12 models selected > cartoon hide (#!2 & sel) > show #!1 models > hide #!2 models > select clear > view front 20 > wait 20 > view filament 60 > wait 80 > view middle 90 > wait 90 > view stalkfocus 60 > view front 20 > wait 20 > view filament 60 > wait 80 > view middle 90 > wait 90 > view stalkfocus 60 > view front 20 > wait 20 > view filament 90 > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > view front 20 > wait > view filament 90 > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 90 > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > view front > view name front > view front > wait wait requires a frame count argument unless motion is in progress > view filament 90 > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > view front > wait wait requires a frame count argument unless motion is in progress > view filament 20 > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > view front > view filament > view name filament > view front > wait wait requires a frame count argument unless motion is in progress > view filament 20 > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > view filament > view name filament > view front > wait wait requires a frame count argument unless motion is in progress > view filament 20 > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > fly 60 start front > view filament 20 > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > fly 60 start front > wait > view filament 20 > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > view front > fly 60 start front > wait > view filament 20 > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > fly front 60 filament > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > view front > fly front 60 filament > wait 120 > view middle 90 > wait 90 > view stalkfocus 60 > fly front 60 filament 60 middle 60 stalkfocus > view front > fly front 60 filament 60 middle 60 stalkfocus [Repeated 1 time(s)] > lighting soft > fly front 60 filament > view filament 60 > wait 120 > fly filament 60 middle > view middle 60 > wait 120 > view stalkfocus > fly front 60 filament > view filament 60 > wait 120 > fly filament 60 middle > view middle 60 > wait 120 > view stalkfocus > fly front 60 filament > view filament 60 > wait 120 > fly filament 60 middle > view middle 60 > wait 120 > view stalkfocus 60 > fly front 60 filament > view filament 60 > wait 60 > fly filament 60 middle > view middle 60 > view stalkfocus 60 > fly front 60 filament > view filament 60 > wait 60 > fly filament 60 middle > view middle 60 > wait 60 > view stalkfocus 60 > view front > fly front 60 filament > view filament 60 > wait 60 > fly filament 60 middle > view middle 60 > wait 60 > view stalkfocus 60 > view front > view filament 60 > view front > fly front filament > show #!2 models > hide #2.1 models > show #2.1 models > hide #!2 models > zoom 2 > zoom 1.2 > view name filament > view front > fly front filament > view filament > show #!2 models > view name filament > view front > fly front filament [Repeated 1 time(s)] > view filament > fly front filament > view filament 60 > fly front filament > view filament 60 > fly front filament > view filament 60 > fly 60 front filament > view filament 60 > view front 10 > wait 10 > view filament 60 > wait 90 > view middle 90 > wait 90 > view stalkfocus 60 > view front 10 > wait 10 > view filament 60 > wait 90 > view middle 60 > wait 60 > view stalkfocus 60 > view front 10 > wait 10 > view filament 60 > wait 60 > view middle 60 > wait 60 > view stalkfocus 60 > view front 10 > wait 10 > view filament 60 > wait 60 > view middle 60 > wait 90 > view stalkfocus 60 > view front 10 > wait 10 > view filament 60 > wait 60 > view middle 20 > wait 90 > view stalkfocus 60 > view front 10 > wait 10 > view filament 60 > wait 60 > view middle 20 > wait 20 > view stalkfocus 60 > hide #!2 models > view front 10 > wait 10 > view filament 20 > wait 20 > view middle 20 > wait 20 > view stalkfocus 60 > view front 10 > wait 10 > view filament 20 > wait 20 > view middle > wait 20 > view stalkfocus 60 > view front 10 > wait 10 > view filament 20 > wait 20 > view middle 40 > wait > view stalkfocus 60 > view front 10 > wait 10 > view filament 20 > wait 20 > view middle 40 > wait > view stalkfocus 20 > view front 10 > wait 10 > view filament 20 > wait 20 > view middle 60 > wait > view stalkfocus 20 > view front 10 > wait 10 > view filament 20 > wait 20 > view middle 60 > wait > view stalkfocus 60 > view front 10 > wait 10 > view middle 60 > wait > view stalkfocus 60 > view front 10 > wait 10 > view middle 60 > wait 60 > view stalkfocus 60 > view front 10 > wait 10 > view middle 60 > wait 60 > view stalkfocus 60 > view front 10 > wait 10 > view middle 60 > wait 60 > view stalkfocus 60 > view front 10 > wait 10 > view middle 60 > wait 60 > view stalkfocus 60 > view front 10 > wait 10 > view middle 60 > view list Named views: filament, focus, front, main, middle, stalkfocus, stalkslice, stalksliceG, start, tetramer > view clear Expected an objects specifier or a view name or a keyword > view front 10 > wait 10 > turn y 3 120 > wait 120 > view tetramer 60 > wait 90 > view focus 40 > wait 60 > hide #1 > show #2 models > wait 60 > view > view front 10 > wait 10 > view middle 60 > show #!1 models > show #1.1 models > hide #!2 models > hide #2.1 models > view front > view middle 60 > view front 10 > wait 10 > turn y 3 120 > wait 120 > view tetramer 60 > wait 90 > view focus 40 > wait 60 > hide #1 > show #2 models > wait 60 > view > show #!1 models > show #1.1 models > hide #!2 models > view front > view tetramer 60 > view front > view tetramer 60 > view front > view middle 60 > clip off > view name middle > view front > view middle 60 > view front > fly 60 front middle > view front > view filament > view middle > view front > view name filament > view front > view filament 60 > view front > view filament 60 > view front > hide #2.1 models > view front > view filament 60 > view front > view tetramer > view front > view tetramer 60 > view front > view name filament > view front > view filament 60 > view name filament > view front > view filament 60 > view front > view filament 10 > view front > view filament 5 > view front > view filament 2 > view front > view filament 20 > view name p2 > view front > view p2 20 > view tetramer > view front > view tetramer 20 > view front > view tetramer 20 > view front > view p2 20 > view front > view tetramer 20 > clip off > volume #!1 hide > volume show > hide #!5 models > hide #!9 models > hide #!11 models > hide #!12 models > camera list Expected one of '360', '360sbs', '360tb', 'crosseye', 'dome', 'mono', 'ortho', 'sbs', 'stereo', 'tb', or 'walleye' or a keyword > view list Named views: filament, focus, front, main, middle, p2, stalkfocus, stalkslice, stalksliceG, start, tetramer > ui tool show Log > view delete main > view list Named views: filament, focus, front, middle, p2, stalkfocus, stalkslice, stalksliceG, start, tetramer > view tetramer > view front > view tetramer 60 > view front > view tetramer 60 > view front > view filament 60 > view tetramer > save ""C:/Users/kfzr5/OneDrive - Florida State University/data/test.cxs"" ——— End of log from Mon Oct 16 11:12:02 2023 ——— opened ChimeraX session > view front > view filament 60 > view front > view tetramer 60 > ui tool show ""Side View"" > view front > view tetramer 60 > view front > view filament 60 > view filament > view name test > view front > view test 60 > view tetramer > view test > view test clip true > view test clip false > view name test > view front > view test 60 > view test clip true > view name test > view front > view test 60 > view orient > view > graphics silhouettes false > graphics silhouettes true > graphics silhouettes false > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > lighting flat [Repeated 1 time(s)] > lighting soft > set bgColor white > set bgColor gray > set bgColor #80808000 > set bgColor black > set bgColor transparent > set bgColor white > set bgColor #ffffff00 > view name test > view front > view test 60 > view front > view test 60 [Repeated 1 time(s)] > view front > view test 60 > view front > view test 60 > view front > view test 60 > view front > view test 60 > view front > view test 60 > view front > view test 60 > view front > view test 60 > view front > view test 60 > view front > view test 60 > view front > view test 60 > view name p1 > view p1 > view test 60 > view p1 > view test 60 OpenGL version: 3.3.0 NVIDIA 526.98 OpenGL renderer: NVIDIA GeForce RTX 3070/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.9.11 Locale: en_US.cp1252 Qt version: PyQt6 6.4.2, Qt 6.4.2 Qt runtime version: 6.4.3 Qt platform: windows Manufacturer: To Be Filled By O.E.M. Model: To Be Filled By O.E.M. OS: Microsoft Windows 11 Pro (Build 22621) Memory: 68,642,189,312 MaxProcessMemory: 137,438,953,344 CPU: 16 AMD Ryzen 7 5800X 8-Core Processor OSLanguage: en-US Installed Packages: alabaster: 0.7.13 appdirs: 1.4.4 asttokens: 2.2.1 Babel: 2.12.1 backcall: 0.2.0 beautifulsoup4: 4.11.2 blockdiag: 3.0.0 build: 0.10.0 certifi: 2023.5.7 cftime: 1.6.2 charset-normalizer: 3.1.0 ChimeraX-AddCharge: 1.5.9.1 ChimeraX-AddH: 2.2.5 ChimeraX-AlignmentAlgorithms: 2.0.1 ChimeraX-AlignmentHdrs: 3.3.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.9.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.3 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.43.10 ChimeraX-AtomicLibrary: 10.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.3.2 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.2 ChimeraX-BondRot: 2.0.1 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.8 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.2 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.3.2 ChimeraX-ChangeChains: 1.0.2 ChimeraX-CheckWaters: 1.3.1 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-Clipper: 0.21.0 ChimeraX-ColorActions: 1.0.3 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.3 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.6.1 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.4.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2 ChimeraX-DistMonitor: 1.4 ChimeraX-DockPrep: 1.1.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.1 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ISOLDE: 1.6.0 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-Label: 1.1.7 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.2 ChimeraX-Map: 1.1.4 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.0.12 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.12 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.9 ChimeraX-ModelPanel: 1.3.7 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.0 ChimeraX-NRRD: 1.0 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.10.1 ChimeraX-PDB: 2.7.2 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 3.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.1 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.8.3 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.1 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.10.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.1.2 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.2.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Topography: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.28.4 ChimeraX-uniprot: 2.2.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.1 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.1.3 comtypes: 1.1.14 contourpy: 1.0.7 cxservices: 1.2.2 cycler: 0.11.0 Cython: 0.29.33 debugpy: 1.6.7 decorator: 5.1.1 docutils: 0.19 executing: 1.2.0 filelock: 3.9.0 fonttools: 4.39.3 funcparserlib: 1.0.1 grako: 3.16.5 h5py: 3.8.0 html2text: 2020.1.16 idna: 3.4 ihm: 0.35 imagecodecs: 2022.9.26 imagesize: 1.4.1 importlib-metadata: 6.6.0 ipykernel: 6.21.1 ipython: 8.10.0 ipython-genutils: 0.2.0 ipywidgets: 8.0.6 jedi: 0.18.2 Jinja2: 3.1.2 jupyter-client: 8.0.2 jupyter-core: 5.3.0 jupyterlab-widgets: 3.0.7 kiwisolver: 1.4.4 line-profiler: 4.0.2 lxml: 4.9.2 lz4: 4.3.2 MarkupSafe: 2.1.2 matplotlib: 3.6.3 matplotlib-inline: 0.1.6 msgpack: 1.0.4 nest-asyncio: 1.5.6 netCDF4: 1.6.2 networkx: 2.8.8 nibabel: 5.0.1 nptyping: 2.5.0 numexpr: 2.8.4 numpy: 1.23.5 openvr: 1.23.701 packaging: 23.1 ParmEd: 3.4.3 parso: 0.8.3 pep517: 0.13.0 pickleshare: 0.7.5 Pillow: 9.3.0 pip: 23.0 pkginfo: 1.9.6 platformdirs: 3.5.0 prompt-toolkit: 3.0.38 psutil: 5.9.4 pure-eval: 0.2.2 pycollada: 0.7.2 pydicom: 2.3.0 Pygments: 2.14.0 pynrrd: 1.0.0 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 pyproject-hooks: 1.0.0 PyQt6-commercial: 6.4.2 PyQt6-Qt6: 6.4.3 PyQt6-sip: 13.4.1 PyQt6-WebEngine-commercial: 6.4.0 PyQt6-WebEngine-Qt6: 6.4.3 python-dateutil: 2.8.2 pytz: 2023.3 pywin32: 305 pyzmq: 25.0.2 qtconsole: 5.4.0 QtPy: 2.3.1 RandomWords: 0.4.0 requests: 2.28.2 scipy: 1.9.3 setuptools: 67.4.0 sfftk-rw: 0.7.3 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.4.1 sphinx: 6.1.3 sphinx-autodoc-typehints: 1.22 sphinxcontrib-applehelp: 1.0.4 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.1 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 stack-data: 0.6.2 tables: 3.7.0 tcia-utils: 1.2.0 tifffile: 2022.10.10 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.3.1 traitlets: 5.9.0 typing-extensions: 4.5.0 tzdata: 2023.3 urllib3: 1.26.15 wcwidth: 0.2.6 webcolors: 1.12 wheel: 0.38.4 wheel-filename: 1.4.1 widgetsnbextension: 4.0.7 WMI: 1.5.1 zipp: 3.15.0 }}} " defect closed normal Depiction not a bug all ChimeraX