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Timeline
Sep 2, 2022:
-
5:20 PM
Ticket #7551 (RFE: Handle the args from PyCharm's debugger) closed by Zach Pearson
-
fixed
-
5:05 PM
Ticket #7552 (Make exported GLTF atom and ribbon colors work in Enduvo VR) created by phil.cruz@…
-
Want Enduvo VR to be able to show atom and ribbon colors from GLTF …
-
3:15 PM
Ticket #7550 (Surface transparency for surfaces meshes not working) closed by Tom Goddard
-
fixed: Fixed in tonight's ChimeraX build.
Here's a tricky way to set the …
-
1:05 PM
Ticket #7549 (Restore new session in old version) closed by Eric Pettersen
-
duplicate
-
1:01 PM
Ticket #7547 (Crash in QFileDialog.getOpenFileNames()) closed by Eric Pettersen
-
can't reproduce: Duplicate of #7535
-
12:48 PM
Ticket #7551 (RFE: Handle the args from PyCharm's debugger) created by Zach Pearson
-
I've been experimenting with PyCharm and find that it greatly enhances …
-
11:41 AM
Ticket #7550 (Surface transparency for surfaces meshes not working) created by mpm896@…
-
[…]
-
11:37 AM
Ticket #7549 (Restore new session in old version) created by chimerax-bug-report@…
-
[…]
-
11:16 AM
Ticket #7548 (Auto-style on 4 chain 120,000 atoms looks bad) created by goddard@…
-
[…]
-
9:55 AM
Ticket #7537 (Print statements not going to log) closed by Zach Pearson
-
fixed: [https://github.com/RBVI/ChimeraX/commit/5735712d4c45def6b058739c8e4fc1 …
-
9:45 AM
Ticket #7547 (Crash in QFileDialog.getOpenFileNames()) created by chimerax-bug-report@…
-
[…]
-
9:28 AM
Ticket #7546 (Graphics crash, macOS 11.6.8, Intel Iris Plus Graphics 650) closed by Tom Goddard
-
nonchimerax: Apple Intel graphics driver crash.
-
7:12 AM
Ticket #7546 (Graphics crash, macOS 11.6.8, Intel Iris Plus Graphics 650) created by chimerax-bug-report@…
-
[…]
Sep 1, 2022:
-
5:34 PM
Ticket #7542 ("zoom" with negative scale factor: math domain error) closed by Tom Goddard
-
fixed: Fixed.
Required zoom factor to be positive.
-
4:25 PM
Ticket #7541 (Crash in _calculate_contour_surface) closed by Tom Goddard
-
can't reproduce: Possibly contouring a map with more than 2 Gvoxels. This was fixed a …
-
4:24 PM
Ticket #7528 (chimerax-users subscription) closed by Eric Pettersen
-
fixed: That's great!
--Eric
-
4:22 PM
Ticket #7539 (Segger session restore: KeyError: 'ijk_to_xyz_transform') closed by Tom Goddard
-
fixed: Fixed.
Changed in Segger in ChimeraX 1.4 made session restore from …
-
4:21 PM
Ticket #7543 (Crash at exit) closed by Eric Pettersen
-
can't reproduce
-
3:52 PM
Ticket #7538 (Mismatch between Cocoa and Carbon for virtual key) closed by Eric Pettersen
-
can't reproduce: Again, crash is in NSTextInputContext()
-
2:43 PM
2022-9-1 edited by Tom Goddard
-
(diff)
-
2:40 PM
Ticket #7358 (Update AlphaFold database sequence searches for July 2022 release of ...) closed by Tom Goddard
-
fixed: Done.
More details #7346.
-
2:00 PM
NIAID2022 edited by Elaine Meng
-
(diff)
-
1:58 PM
NIAID2022 edited by Elaine Meng
-
(diff)
-
1:56 PM
NIAID2022 edited by Elaine Meng
-
(diff)
-
1:28 PM
NIAID2022 edited by Elaine Meng
-
(diff)
-
12:15 PM
Ticket #7544 (ChimeraX crashes on start-up) created by 18111510056@…
-
Begin forwarded message:
From: 胡玉霞 via ChimeraX-users …
-
12:06 PM
Ticket #7543 (Crash at exit) created by chimerax-bug-report@…
-
[…]
-
8:59 AM
Ticket #7542 ("zoom" with negative scale factor: math domain error) created by chimerax-bug-report@…
-
[…]
-
4:46 AM
Ticket #7541 (Crash in _calculate_contour_surface) created by chimerax-bug-report@…
-
[…]
-
1:52 AM
Ticket #7540 (QObject::~QObject: Timers cannot be stopped from another thread) created by koala008@…
-
[…]
-
12:19 AM
Ticket #7539 (Segger session restore: KeyError: 'ijk_to_xyz_transform') created by chimerax-bug-report@…
-
[…]
-
12:09 AM
Ticket #7538 (Mismatch between Cocoa and Carbon for virtual key) created by chimerax-bug-report@…
-
[…]
Aug 31, 2022:
-
8:14 PM
Ticket #7537 (Print statements not going to log) created by goddard@…
-
[…]
-
5:32 PM
ChangeLog edited by Elaine Meng
-
(diff)
-
3:51 PM
Ticket #7534 (Crash in QFileDialog.getOpenFileNames()) closed by Zach Pearson
-
duplicate: Duplicate of #7535
-
12:14 PM
Ticket #7536 (_ArrayMemoryError reading MD coordinates in netcdf format, 34 Gbytes) created by chimerax-bug-report@…
-
[…]
-
12:02 PM
Ticket #7535 (Crash in QFileDialog.getOpenFileNames()) created by ria2@…
-
[…]
-
12:02 PM
Ticket #7534 (Crash in QFileDialog.getOpenFileNames()) created by ria2@…
-
[…]
-
11:57 AM
Ticket #7533 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: pre-Python 3.9.11
-
11:50 AM
Ticket #7533 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
-
11:32 AM
Ticket #7532 (Crash running dialog sub-event loop) closed by Eric Pettersen
-
can't reproduce: No Python backtrace
-
11:13 AM
Ticket #7530 (ISOLDE requirements) closed by Eric Pettersen
-
limitation: Hi Dmitry,
It looks like you installed the UI bundle from the …
-
11:08 AM
Ticket #7013 (DICOM: RTSTRUCT not within the proper study in models hierarchy) closed by Zach Pearson
-
fixed: This will be fixed when I merge my DICOM metadata browser.
-
10:49 AM
Ticket #7529 (Crash/abort at startup) closed by Eric Pettersen
-
can't reproduce
-
6:10 AM
Ticket #7532 (Crash running dialog sub-event loop) created by chimerax-bug-report@…
-
[…]
-
4:30 AM
Ticket #7531 (Menus obscured) created by mariguer@…
-
[…]
snapshot.PNG
-
4:06 AM
Ticket #7530 (ISOLDE requirements) created by semchonok@…
-
[…]
Aug 30, 2022:
-
11:31 PM
Ticket #7529 (Crash/abort at startup) created by chimerax-bug-report@…
-
[…]
-
7:12 PM
Ticket #7528 (chimerax-users subscription) created by zhou-jiaqiao1998@…
-
[…]
-
1:05 PM
Ticket #7458 (update uniref databases for blast protein) closed by Elaine Meng
-
duplicate
-
11:13 AM
Ticket #7527 (Did not find any connected LookingGlass display) closed by Tom Goddard
-
nonchimerax: As the error message says, ChimeraX didn't find any LookingGlass …
-
10:54 AM
Ticket #7526 (Crash in QMainWindow::removeDockWidget) closed by Eric Pettersen
-
can't reproduce
-
10:49 AM
Ticket #7525 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: 1.3
-
10:42 AM
Ticket #7346 (Make alphafold fetch and pae commands work with version 3 of the ...) closed by Tom Goddard
-
fixed: Done.
ChimeraX daily builds now fetch from EBI Alphafold database …
-
10:08 AM
2022-9-1 created by Tom Goddard
-
10:06 AM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
7:10 AM
Ticket #7527 (Did not find any connected LookingGlass display) created by chimerax-bug-report@…
-
[…]
-
3:45 AM
Ticket #7526 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
-
[…]
Aug 29, 2022:
-
4:38 PM
Dev2022-8-29 edited by Tom Goddard
-
(diff)
-
3:24 PM
Ticket #7525 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
-
1:48 PM
Ticket #7524 (Save image to desktop: permission denied) created by kdamico@…
-
[…]
-
1:36 PM
ChangeLog edited by Eric Pettersen
-
(diff)
-
10:51 AM
Dev2022-8-29 created by Tom Goddard
-
10:49 AM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
10:01 AM
Ticket #7521 (Graphics crash, macOS 10.15.5, Intel Iris Plus Graphics 640) closed by Tom Goddard
-
nonchimerax: Apple Intel graphics driver crash.
-
8:57 AM
Ticket #7523 (Error reading pbonds file) closed by Eric Pettersen
-
duplicate: This was changed into a UserError awhile ago.
-
8:54 AM
Ticket #7522 (Restore new session in old version) closed by Eric Pettersen
-
not a bug
-
7:26 AM
Ticket #7523 (Error reading pbonds file) created by chimerax-bug-report@…
-
[…]
Aug 28, 2022:
-
7:47 AM
Ticket #7522 (Restore new session in old version) created by chimerax-bug-report@…
-
[…]
Aug 26, 2022:
-
6:12 PM
Ticket #7521 (Graphics crash, macOS 10.15.5, Intel Iris Plus Graphics 640) created by chimerax-bug-report@…
-
[…]
-
6:10 PM
Ticket #7520 (Copy html instead of plain text selection from Log with Mac Cmd+C) closed by Tom Goddard
-
fixed: Fixed.
There was obsolete code in ChimeraX to work around some Qt 5.6 …
-
6:08 PM
Ticket #7520 (Copy html instead of plain text selection from Log with Mac Cmd+C) created by goddard@…
-
[…]
-
4:23 PM
Ticket #7519 (Mismatch between Cocoa and Carbon for virtual key) closed by Eric Pettersen
-
can't reproduce
-
2:36 PM
Ticket #7519 (Mismatch between Cocoa and Carbon for virtual key) created by chimerax-bug-report@…
-
[…]
-
2:18 PM
Ticket #7517 (Can't write command history: No space left on device) closed by Eric Pettersen
-
nonchimerax
-
2:17 PM
Ticket #7516 (Can't write command history: No space left on device) closed by Eric Pettersen
-
nonchimerax
-
2:16 PM
Ticket #7515 (Can't write command history: No space left on device) closed by Eric Pettersen
-
nonchimerax
-
2:14 PM
Ticket #7514 (Can't write command history: No space left on device) closed by Eric Pettersen
-
nonchimerax
-
2:09 PM
Ticket #7513 (Graphics crash, macOS 11.5.2, Intel Iris Plus Graphics 640) closed by Tom Goddard
-
nonchimerax: Apple Intel graphics driver crash.
-
2:05 PM
WebJobInfo created by Eric Pettersen
-
2:00 PM
WikiStart edited by Eric Pettersen
-
(diff)
-
1:56 PM
Ticket #7518 (Modeller web service errors not reported) created by wgrubbe@…
-
Modeling a loop where the loop residues aren't provided fails but …
-
12:58 PM
Ticket #7517 (Can't write command history: No space left on device) created by chimerax-bug-report@…
-
[…]
-
12:57 PM
Ticket #7516 (Can't write command history: No space left on device) created by chimerax-bug-report@…
-
[…]
-
11:33 AM
Ticket #7515 (Can't write command history: No space left on device) created by chimerax-bug-report@…
-
[…]
-
11:32 AM
Ticket #7514 (Can't write command history: No space left on device) created by chimerax-bug-report@…
-
[…]
-
10:33 AM
Ticket #7512 (Tautomers in alt locs) closed by Eric Pettersen
-
limitation: Hi Tristan,
In ChimeraX, alt locs are not designed for situations …
-
10:20 AM
Ticket #7510 (Mac two displays with side view: glClear: invalid framebuffer operation) closed by Tom Goddard
-
can't reproduce: Probably Mac OpenGL graphics driver problem. User had two displays …
-
9:50 AM
Ticket #7513 (Graphics crash, macOS 11.5.2, Intel Iris Plus Graphics 640) created by chimerax-bug-report@…
-
[…]
-
9:05 AM
Ticket #7511 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: 1.3
-
9:02 AM
Ticket #7509 (Crash in event loop) closed by Eric Pettersen
-
can't reproduce
-
8:58 AM
Ticket #7508 (Opening new session in old ChimeraX) closed by Eric Pettersen
-
not a bug: Hi Nitesh,
ChimeraX session files are forwards compatible (can be …
-
7:02 AM
Ticket #7512 (Tautomers in alt locs) created by Tristan Croll
-
[…]
-
7:00 AM
Ticket #7511 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
-
5:09 AM
Ticket #7510 (Mac two displays with side view: glClear: invalid framebuffer operation) created by chimerax-bug-report@…
-
[…]
Aug 25, 2022:
-
10:29 PM
Ticket #7509 (Crash in event loop) created by chimerax-bug-report@…
-
[…]
-
6:30 PM
Ticket #7508 (Opening new session in old ChimeraX) created by nkkhandelwal@…
-
[…]
-
6:07 PM
ChangeLog edited by Elaine Meng
-
(diff)
-
4:42 PM
ChangeLog edited by Elaine Meng
-
(diff)
-
4:02 PM
2022-8-25 edited by Tom Goddard
-
(diff)
-
3:38 PM
Ticket #7507 (vop resample: glClear: invalid framebuffer operation) closed by Tom Goddard
-
nonchimerax: This appears to be a Qt bug on Mac related to dual displays, …
-
1:49 PM
Dev2022-8-22 edited by Eric Pettersen
-
(diff)
-
10:49 AM
Ticket #7506 (Crash/hang showing Rapid Access at startup) closed by Eric Pettersen
-
can't reproduce
-
10:48 AM
Ticket #7505 (Crash destroying tool) closed by Eric Pettersen
-
can't reproduce: Was using 19.9 GB at the time.
-
10:41 AM
Ticket #7503 (Mismatch between Cocoa and Carbon for virtual key) closed by Eric Pettersen
-
can't reproduce: Second report of this we've seen (#7445)
-
10:20 AM
Ticket #7502 (Open new session in old ChimeraX) closed by Eric Pettersen
-
not a bug
-
9:16 AM
Ticket #7507 (vop resample: glClear: invalid framebuffer operation) created by chimerax-bug-report@…
-
[…]
-
8:41 AM
Ticket #7506 (Crash/hang showing Rapid Access at startup) created by chimerax-bug-report@…
-
[…]
-
7:20 AM
Ticket #7505 (Crash destroying tool) created by chimerax-bug-report@…
-
[…]
-
6:26 AM
Ticket #7504 (ISOLDE Deleting symmetry model: 'AtomicStructure' object has no ...) created by lp212@…
-
[…]
-
12:13 AM
Ticket #7503 (Mismatch between Cocoa and Carbon for virtual key) created by chimerax-bug-report@…
-
[…]
Aug 24, 2022:
-
11:35 PM
2022-8-25 edited by Tom Goddard
-
(diff)
-
4:51 PM
ChangeLog edited by Elaine Meng
-
(diff)
-
4:37 PM
Ticket #7501 (Atom typing wrong) closed by Eric Pettersen
-
fixed: Was actually addh changing the type.
Fix: …
-
1:45 PM
Ticket #7502 (Open new session in old ChimeraX) created by chimerax-bug-report@…
-
[…]
6MEOCD4mutanalysisV4.cxs
-
11:26 AM
Ticket #7501 (Atom typing wrong) created by Eric Pettersen
-
In 3fx2 residue FMN, N10 is being typed as N2+ and N1 as N2, The …
-
11:16 AM
Ticket #7500 (Make matchmaker command use nucleic matrix by default for RNA/DNA) created by goddard@…
-
[…]
-
10:09 AM
Ticket #7498 (_ArrayMemoryError resampling volume) closed by Tom Goddard
-
not a bug: The error message seems clear enough. Out of memory trying to …
-
10:03 AM
Ticket #7499 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: 1.3
-
10:00 AM
Ticket #7497 (Unknown crash) closed by Eric Pettersen
-
can't reproduce: Was using 10.1 GB at the time
-
5:05 AM
Ticket #7499 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
-
2:51 AM
Ticket #7498 (_ArrayMemoryError resampling volume) created by chimerax-bug-report@…
-
[…]
-
1:13 AM
Ticket #7497 (Unknown crash) created by chimerax-bug-report@…
-
[…]
Aug 23, 2022:
-
8:12 PM
Ticket #7496 (Graphics crash, macOS 12.3.1, Intel Iris Plus Graphics 645) closed by Tom Goddard
-
nonchimerax: Apple Intel graphics driver crash.
-
4:52 PM
Ticket #7496 (Graphics crash, macOS 12.3.1, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
-
[…]
-
1:50 PM
Ticket #7474 (allow user to specify job name (folder name) for alphafold predict) closed by Tom Goddard
-
fixed: Done.
I added a "Results directory" entry field to the AlphaFold GUI …
-
11:54 AM
Ticket #7495 (Make bundle_builder set MACOSX_DEPLOYMENT_TARGET) created by Tristan Croll
-
Tristan asks in ticket #4663 (Mac M1 port) comment 70 whether he needs …
-
10:49 AM
2022-8-25 created by Tom Goddard
-
10:47 AM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
9:24 AM
Ticket #3667 (non-terminal O3' should not get protonated) closed by Eric Pettersen
-
fixed: Fix: …
-
8:55 AM
Ticket #7494 (set_pbgroup_py_instance: symbol not found) closed by Eric Pettersen
-
duplicate
-
8:27 AM
Ticket #7494 (set_pbgroup_py_instance: symbol not found) created by chimerax-bug-report@…
-
[…]
-
7:11 AM
Ticket #7493 (Unknown crash) created by shayan.sarkar@…
-
[…]
Aug 22, 2022:
-
10:02 PM
Ticket #7419 (Drag select blacks out graphics) closed by Tom Goddard
-
fixed: Fixed.
It is not clear if this is an OpenGL driver bug. When the …
-
6:57 PM
Ticket #7486 (Crash computing ribbons) closed by Tom Goddard
-
can't reproduce: Appears it was in the C++ ribbon_extrusions() code called by …
-
6:22 PM
Ticket #7482 (Operation not permitted opening file from HTML link) closed by Tom Goddard
-
not a bug: Yep, looks like the user clicked a recent file thumbnail image and did …
-
6:08 PM
Ticket #7488 (make BILD transparency work) closed by Tom Goddard
-
limitation: Ticket #3838 explains that we do not have the resources (funding / …
-
5:54 PM
Ticket #7492 (Can ChimeraX with Qt 6 run on Debian 9?) closed by Tom Goddard
-
not a bug: Just noting the GitHub discussion in Trac so we can easily find it.
-
5:53 PM
Ticket #7492 (Can ChimeraX with Qt 6 run on Debian 9?) created by Tom Goddard
-
Looks like Debian 9 Linux distro based on glibc 2.24 is too old to run …
-
5:51 PM
Ticket #7342 (Axes/Planes/Centroids tool) closed by Eric Pettersen
-
fixed
-
4:41 PM
Dev2022-8-22 edited by Tom Goddard
-
(diff)
-
4:37 PM
Dev2022-8-22 created by Tom Goddard
-
4:28 PM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
12:10 PM
Ticket #7490 (read CASTp) closed by Eric Pettersen
-
duplicate: Hi Andrea,
Chimera and ChimeraX are different programs. Chimera has …
-
12:06 PM
Ticket #7491 (Make --cmd startup option behave like executing a script in its ...) closed by Tom Goddard
-
fixed: Fixed.
Made the commands given with the --cmd option run as if they …
-
12:04 PM
Ticket #7491 (Make --cmd startup option behave like executing a script in its ...) created by christian.tueting@…
-
Christian noted that the shell --cmd option in ChimeraX where several …
-
11:38 AM
Ticket #7485 (Surface.vertices is None) closed by Tom Goddard
-
duplicate: Duplicate of #7466
-
11:34 AM
Ticket #7490 (read CASTp) created by avrodrigues@…
-
[…]
-
11:30 AM
Ticket #7487 (H-bonds: cannot import name 'report_exception' from 'chimerax.core.logger') closed by Eric Pettersen
-
fixed: Fix: …
-
11:26 AM
Ticket #7466 (Coloring surface: self.vertices is None) closed by Tom Goddard
-
fixed: Fixed.
This error in color command was caused by the previous failed …
-
11:15 AM
Ticket #7484 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: 1.3
-
11:14 AM
Ticket #7483 (Crash using File→Open on Windows) closed by Eric Pettersen
-
can't reproduce: 1.2.5
-
10:57 AM
Ticket #7489 (Test if ticket assigned to tic20 uses Tristan's old or new email address) closed by Tom Goddard
-
not a bug
-
10:53 AM
Ticket #7489 (Test if ticket assigned to tic20 uses Tristan's old or new email address) created by Tom Goddard
-
10:42 AM
Ticket #7480 (Opening new session in old ChimeraX) closed by Eric Pettersen
-
duplicate
-
10:41 AM
Ticket #7479 (Crash draining NSAutoreleasePool during dialog exec) closed by Eric Pettersen
-
can't reproduce: Supposedly happens when an object is released more times that it's …
-
10:20 AM
Ticket #7430 (why does this script show DICOM as surface style?) closed by Tom Goddard
-
fixed: Forgot to commit the fix to the git code repository. I guess I was in …
-
10:19 AM
Ticket #7431 ("close session" does not reset volume model color rotation) closed by Tom Goddard
-
fixed
-
9:24 AM
Ticket #7488 (make BILD transparency work) created by mlists@…
-
From Francois Berenger:
In the old Chimera (not X), if I put two …
-
7:52 AM
Ticket #7487 (H-bonds: cannot import name 'report_exception' from 'chimerax.core.logger') created by chimerax-bug-report@…
-
[…]
-
3:04 AM
Ticket #7486 (Crash computing ribbons) created by chimerax-bug-report@…
-
[…]
-
1:48 AM
Ticket #7485 (Surface.vertices is None) created by f.bruno@…
-
[…]
-
1:13 AM
Ticket #7484 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
Aug 21, 2022:
-
11:49 PM
Ticket #7483 (Crash using File→Open on Windows) created by chimerax-bug-report@…
-
[…]
-
1:27 PM
Ticket #7482 (Operation not permitted opening file from HTML link) created by chimerax-bug-report@…
-
[…]
-
5:30 AM
Ticket #7481 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') created by disha-gajanan.hiregange@…
-
[…]
Aug 20, 2022:
-
9:17 AM
Ticket #7480 (Opening new session in old ChimeraX) created by chimerax-bug-report@…
-
[…]
Aug 19, 2022:
-
11:07 AM
Ticket #7479 (Crash draining NSAutoreleasePool during dialog exec) created by chimerax-bug-report@…
-
[…]
-
9:21 AM
Ticket #7478 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: 1.3
-
9:20 AM
Ticket #7477 (Crash during SMILES translation) closed by Eric Pettersen
-
can't reproduce
-
9:17 AM
Ticket #7476 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: 1.3
-
9:12 AM
Ticket #7475 (No symmetries for 2bbv) closed by Eric Pettersen
-
duplicate: Asked and answered on the chimerax-users list.
-
6:18 AM
Ticket #7478 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
-
1:26 AM
Ticket #7477 (Crash during SMILES translation) created by chimerax-bug-report@…
-
[…]
-
12:36 AM
Ticket #7476 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
Aug 18, 2022:
-
6:20 PM
Ticket #7475 (No symmetries for 2bbv) created by john.obrien@…
-
[…]
2bbv practice.cxs
-
4:30 PM
Ticket #7473 (name 'notImplemented' is not defined) closed by Eric Pettersen
-
fixed
-
3:40 PM
Ticket #7471 (Incomplete secondary structure) closed by Eric Pettersen
-
duplicate: Asked and answered on the chimerax-users list.
-
3:20 PM
Ticket #7474 (allow user to specify job name (folder name) for alphafold predict) created by phil.cruz@…
-
Elaine: paraphrase of conversation with Phil during NIAID zoom …
-
1:42 PM
NIAID2022 edited by Elaine Meng
-
(diff)
-
12:13 PM
Ticket #7473 (name 'notImplemented' is not defined) created by Elaine Meng
-
[…]
-
8:35 AM
Ticket #7472 (Crash or hang at startup) created by eackad@…
-
[…]
Aug 17, 2022:
-
4:02 PM
Ticket #7471 (Incomplete secondary structure) created by rmattoo@…
-
[…]
Screen Shot 2022-08-15 at 10.54.07 PM.png
-
1:38 PM
Ticket #7470 (Start simulation: openmm.OpenMMException: Error compiling kernel: ...) created by lorenzo.finci@…
-
[…]
-
10:43 AM
Ticket #7469 (libGLU.so.1: cannot open shared object file: No such file or directory) closed by Greg Couch
-
limitation: The Ubuntu and RHEL packages have dependencies that pull this in. So …
-
10:31 AM
Ticket #7468 (Hang/crash at startup) closed by Eric Pettersen
-
can't reproduce
Aug 16, 2022:
-
4:56 PM
Ticket #7469 (libGLU.so.1: cannot open shared object file: No such file or directory) created by chimerax-bug-report@…
-
[…]
-
3:01 PM
Ticket #7468 (Hang/crash at startup) created by chimerax-bug-report@…
-
[…]
-
11:34 AM
Ticket #7440 (Emulate Chimera per-helix coloring) closed by Eric Pettersen
-
fixed: Available in next daily build
-
10:53 AM
Ticket #7452 (Problem reading ORCA output file) closed by Eric Pettersen
-
fixed
-
10:29 AM
Ticket #7467 (Coloring surface: self.vertices is None) closed by Eric Pettersen
-
duplicate: Duplicate of #7466
-
9:38 AM
Ticket #7464 (Session save: seg fault appending to unprocessed list) closed by Eric Pettersen
-
can't reproduce: Hi Shayan,
Thanks for reporting this problem. I would recommend that …
-
9:32 AM
Ticket #7460 (FindHBond: accPhiPsi() takes exactly 8 arguments (9 given)) closed by Eric Pettersen
-
can't reproduce: Probably something hinky about the structure
-
7:57 AM
Ticket #7467 (Coloring surface: self.vertices is None) created by f.bruno@…
-
[…]
-
7:57 AM
Ticket #7466 (Coloring surface: self.vertices is None) created by f.bruno@…
-
[…]
-
4:40 AM
Ticket #7465 (Crash showing Rapid Access at startup) created by f.bruno@…
-
[…]
Aug 15, 2022:
-
8:58 PM
Ticket #7464 (Session save: seg fault appending to unprocessed list) created by shayan.sarkar@…
-
[…]
-
3:40 PM
Ticket #7463 (Additional phenix/douse enhancements) created by Eric Pettersen
-
limit density values to 3 significant digits (Rotamers too)
reveal map …
-
3:32 PM
Ticket #7462 (Sequence Viewer context menu "blast" should provide more options) created by Elaine Meng
-
... instead of always just using defaults, which prevents blasting …
-
3:10 PM
Ticket #7461 (Blast Results dialog: add buttons for same actions as in context menu) created by Elaine Meng
-
The context menu actions are not very discoverable by people who don't …
-
2:55 PM
Ticket #7460 (FindHBond: accPhiPsi() takes exactly 8 arguments (9 given)) created by chimerax-bug-report@…
-
[…]
-
2:44 PM
Ticket #7431 ("close session" does not reset volume model color rotation) reopened by Elaine Meng
-
Also the following does not reset volume coloring, so I'm pretty sure …
-
2:35 PM
Ticket #7430 (why does this script show DICOM as surface style?) reopened by Elaine Meng
-
This is not fixed... tested in UCSF ChimeraX version: …
-
2:16 PM
Ticket #7459 (Cannot fetch mmCIF: Network is down) closed by Eric Pettersen
-
fixed: Great!
--Eric
-
1:40 PM
Ticket #7459 (Cannot fetch mmCIF: Network is down) created by zhe.sang@…
-
[…]
-
11:56 AM
Ticket #7457 ("move label" mouse mode broken) closed by Eric Pettersen
-
fixed: Squirrel away PickedTriangle as attribute of PickedModel for code …
-
11:32 AM
Ticket #7458 (update uniref databases for blast protein) created by Elaine Meng
-
I am told that we are using versions from 2012 (yikes) and that there …
-
11:01 AM
Ticket #7457 ("move label" mouse mode broken) created by Elaine Meng
-
[…]
-
9:46 AM
Ticket #7447 (Newer-version check failure) closed by Greg Couch
-
limitation: Then this was a bug during the web services upgrade process that …
-
9:20 AM
Ticket #7456 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: 1.3
-
9:19 AM
Ticket #7455 (Crash in fork) closed by Eric Pettersen
-
nonchimerax: Was using 9.0GB at the time
-
9:17 AM
Ticket #7454 (Graphics crash, macOS 12.5, Intel Iris Plus Graphics) closed by Eric Pettersen
-
can't reproduce: Possible graphics driver bug
-
9:16 AM
Ticket #7453 (Calling [C++: N10atomstruct5ChainE] _cpp_demotion failed) closed by Eric Pettersen
-
can't reproduce: Hi Naeyma,
Thanks for reporting this problem. I recommend you …
-
9:04 AM
Ticket #7450 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: 1.3
-
8:55 AM
Ticket #7449 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: 1.3
-
8:53 AM
Ticket #7448 (Crash using File→Open on Windows) closed by Eric Pettersen
-
can't reproduce: 1.3
-
8:45 AM
Ticket #7445 (Mismatch between Cocoa and Carbon for virtual key) closed by Eric Pettersen
-
can't reproduce: Crash in text-input handling, possibly while trying to input an …
-
8:35 AM
Ticket #7444 (Graphics crash, macOS 11.6.8, Intel Iris Plus Graphics 645) closed by Eric Pettersen
-
can't reproduce: Graphics driver bug?
-
8:22 AM
Ticket #7456 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
-
6:18 AM
Ticket #7455 (Crash in fork) created by chimerax-bug-report@…
-
[…]
-
6:01 AM
Ticket #7454 (Graphics crash, macOS 12.5, Intel Iris Plus Graphics) created by chimerax-bug-report@…
-
[…]
-
12:31 AM
Ticket #7453 (Calling [C++: N10atomstruct5ChainE] _cpp_demotion failed) created by islamnae@…
-
[…]
Aug 14, 2022:
-
7:37 AM
Ticket #7452 (Problem reading ORCA output file) created by matthew.graneri@…
-
[…]
c3po-opt-freq-casscf-tz.out
-
7:30 AM
Ticket #7451 (Problem reading ORCA output file) created by chimerax-bug-report@…
-
[…]
Aug 13, 2022:
-
6:21 PM
Ticket #7450 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
-
5:56 PM
Ticket #7449 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
-
5:39 PM
Ticket #7448 (Crash using File→Open on Windows) created by chimerax-bug-report@…
-
[…]
-
12:52 AM
Ticket #7447 (Newer-version check failure) created by chimerax-bug-report@…
-
[…]
-
12:03 AM
Ticket #7446 (Crash recording movie) created by chimerax-bug-report@…
-
[…]
Aug 12, 2022:
-
10:08 PM
Ticket #7445 (Mismatch between Cocoa and Carbon for virtual key) created by chimerax-bug-report@…
-
[…]
-
6:52 PM
Ticket #7444 (Graphics crash, macOS 11.6.8, Intel Iris Plus Graphics 645) created by chimerax-bug-report@…
-
[…]
-
4:50 PM
Ticket #7443 (Make easy shadowed transparent surface mode) created by Tom Goddard
-
It is common to show transparent surfaces (cryoEM or molecular) with …
-
3:40 PM
Ticket #7441 (Graphics crash, macOS 12.5, Intel Iris Plus Graphics 655) closed by Tom Goddard
-
nonchimerax: Apple Intel graphics driver crash.
-
3:36 PM
Ticket #7407 (ArtiaX error after closing all models and opening new particle list) closed by Tom Goddard
-
fixed: I'll close this ticket since you don't have an account on our system …
-
3:30 PM
Ticket #7442 (Toolshed web server logs are mostly missing after May 2022) created by Tom Goddard
-
It looks like the Toolshed web server logs are mostly missing from May …
-
2:46 PM
Ticket #7437 (Crash starting ISOLDE simulation) closed by Tom Goddard
-
can't reproduce: Crashed in numpy making a triangulation for an atom sphere (a few …
-
10:49 AM
Ticket #7435 (Speed up Blast Protein search by using 4 threads) closed by Zach Pearson
-
fixed: I've made the change. :) Glad you found a way to make this faster.
-
10:34 AM
Ticket #7439 (Crash in AtomSearchTree) closed by Eric Pettersen
-
duplicate: Probable duplicate of #7256
-
10:11 AM
Ticket #7441 (Graphics crash, macOS 12.5, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
-
[…]
-
9:50 AM
Ticket #7440 (Emulate Chimera per-helix coloring) created by Elaine Meng
-
In Chimera if you rainbow the ribbon and then make perhelix axes, they …
-
9:32 AM
Ticket #7439 (Crash in AtomSearchTree) created by chimerax-bug-report@…
-
[…]
-
9:14 AM
Ticket #7436 (Crash using File→Open on Windows and/or in return statement) closed by Eric Pettersen
-
can't reproduce: Early 1.4, before moving to the fixed version of Python
-
9:11 AM
Ticket #7434 (Crash or hang at startup) closed by Eric Pettersen
-
can't reproduce
-
8:08 AM
Ticket #7438 (Toolshed bot traffic?) created by Tristan Croll
-
[…]
Aug 11, 2022:
-
9:01 PM
Ticket #7437 (Crash starting ISOLDE simulation) created by chimerax-bug-report@…
-
[…]
-
7:47 PM
Ticket #7436 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
-
[…]
-
7:01 PM
Ticket #7435 (Speed up Blast Protein search by using 4 threads) created by Tom Goddard
-
Have blastp use 4 threads instead of the default 1 thread when running …
-
5:08 PM
Ticket #7434 (Crash or hang at startup) created by chimerax-bug-report@…
-
[…]
-
4:42 PM
Ticket #7433 (Destruction of status bar during session restore: wrapped C/C++ object ...) closed by Eric Pettersen
-
duplicate: Hi Maria,
Thanks for reporting this problem. It has been fixed in …
-
4:36 PM
Ticket #7432 (Crash using File→Open dialog on Windows and/or returning from function) closed by Eric Pettersen
-
can't reproduce: 1.3
-
4:33 PM
Ticket #7429 (Crash showing Rapid Access at startup) closed by Eric Pettersen
-
can't reproduce: Maybe, maybe not.
-
4:28 PM
Ticket #7427 (QMainWindowLayout::tabPosition called with out-of-bounds value) closed by Eric Pettersen
-
can't reproduce: Seemed to occur after "Destroying pre-existing alignment with …
-
3:07 PM
Ticket #7433 (Destruction of status bar during session restore: wrapped C/C++ object ...) created by maru.jaimegarza@…
-
[…]
-
2:33 PM
2022-8-11 edited by Tom Goddard
-
(diff)
-
2:26 PM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
2:03 PM
Ticket #7431 ("close session" does not reset volume model color rotation) closed by Tom Goddard
-
fixed: Fixed.
I made it reset the volume colors whenever you open a volume …
-
1:46 PM
Ticket #7430 (why does this script show DICOM as surface style?) closed by Tom Goddard
-
fixed: Fixed.
The code that made volumes update surfaces immediately in …
-
11:18 AM
Ticket #7432 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
-
[…]
-
10:41 AM
ChangeLog edited by Elaine Meng
-
(diff)
-
10:10 AM
Ticket #7431 ("close session" does not reset volume model color rotation) created by Elaine Meng
-
If I open a map, then use "close session", then reopen the map, it is …
-
10:08 AM
Ticket #7430 (why does this script show DICOM as surface style?) created by Elaine Meng
-
In older versions of ChimeraX (e.g. 0.9) this short script given …
-
5:05 AM
Ticket #7429 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
-
[…]
-
1:49 AM
Ticket #7428 (Inconsistent stack trace information) created by chimerax-bug-report@…
-
[…]
Aug 10, 2022:
-
1:39 PM
Ticket #7427 (QMainWindowLayout::tabPosition called with out-of-bounds value) created by chimerax-bug-report@…
-
[…]
-
11:29 AM
Ticket #7426 (BlastProtein giving a warning when an error should be reported) created by goddard@…
-
[…]
-
11:04 AM
Dev2022-8-8 edited by Eric Pettersen
-
(diff)
-
10:47 AM
Ticket #7424 (ISOLDE color button: __init__() got an unexpected keyword argument ...) closed by Tristan Croll
-
duplicate: This is another instance of #7381. The ChimeraX 1.5.dev... daily …
-
10:34 AM
Ticket #7423 (Crash deleting structures) closed by Eric Pettersen
-
can't reproduce
-
10:33 AM
Ticket #7422 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by Eric Pettersen
-
can't reproduce: I'm not sure how this is possible. The user restores a session and …
-
10:13 AM
Ticket #7425 (SEQCROW: wrapped C/C++ object of type DelayForcePrint has been deleted) closed by Tom Goddard
-
fixed
-
10:09 AM
Ticket #7425 (SEQCROW: wrapped C/C++ object of type DelayForcePrint has been deleted) created by goddard@…
-
[…]
-
9:08 AM
Ticket #7418 (BLAST AlphaFold database version 3: Bad Request) closed by Zach Pearson
-
fixed: Bumped the allowable database versions on webservices; should be good …
-
2:25 AM
Ticket #7424 (ISOLDE color button: __init__() got an unexpected keyword argument ...) created by chimerax-bug-report@…
-
[…]
Aug 9, 2022:
-
9:05 PM
Ticket #7423 (Crash deleting structures) created by chimerax-bug-report@…
-
[…]
-
1:34 PM
Ticket #7422 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by chimerax-bug-report@…
-
[…]
-
12:38 PM
2022-8-11 created by Tom Goddard
-
12:37 PM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
12:16 PM
Ticket #7410 (Crash creating SEQCROW QMenuBar in ARM tech preview) closed by Tom Goddard
-
fixed: Sounds like your fake menus are a reasonable work-around.
It might be …
-
10:30 AM
Dev2022-8-8 edited by Eric Pettersen
-
(diff)
-
10:23 AM
Ticket #7360 (Crash in atom-spec parser) closed by Eric Pettersen
-
can't reproduce: We intend to change our command parser anyway, which will probably …
-
9:57 AM
Ticket #7421 ([ChimeraX] error) created by Sijie.Huang@…
-
[…]
-
9:16 AM
Ticket #7420 (Scrollable Segger segment saving?) created by posert@…
-
[…]
Aug 8, 2022:
-
8:30 PM
Ticket #7015 (DICOM: was "airways" preset always so dim?) closed by Tom Goddard
-
not a bug: The VR dicom lung image you link to appears to be maybe 5 or more …
-
7:53 PM
Ticket #7205 (Morph: index out of bounds) closed by Tom Goddard
-
can't reproduce: No response from reporter.
-
7:52 PM
Ticket #7239 (Log link to associated EMDB entry when PDB model opened) closed by Tom Goddard
-
fixed
-
7:51 PM
Ticket #7290 (Crash loading dylib) closed by Tom Goddard
-
can't reproduce: No response from reporter.
-
7:50 PM
Ticket #7296 (Crash loading dylib) closed by Tom Goddard
-
can't reproduce: No response from reporter.
-
7:49 PM
Ticket #7309 (volume sel step 1: index out of range for ImageJ TIFF stack) closed by Tom Goddard
-
can't reproduce: No response from reporter.
-
7:48 PM
Ticket #7069 (Surface session restore: updaters is None) closed by Tom Goddard
-
duplicate
-
7:46 PM
Ticket #7405 (Revert rotate independent mouse mode to normal rotation when models closed) closed by Tom Goddard
-
fixed
-
7:10 PM
Ticket #7414 (develop example bundles: missing bundle_api for bundle) closed by Eric Pettersen
-
not a bug: Glad I could help. If there's anything of general utility we can do …
-
6:14 PM
phenix-8-11-22 edited by Eric Pettersen
-
(diff)
-
6:12 PM
phenix-8-11-22 edited by Eric Pettersen
-
(diff)
-
6:03 PM
phenix-8-11-22 edited by Eric Pettersen
-
(diff)
-
5:50 PM
phenix-8-11-22 edited by Eric Pettersen
-
(diff)
-
5:30 PM
Ticket #7419 (Drag select blacks out graphics) created by asarnow@…
-
[…]
-
5:28 PM
phenix-8-11-22 created by Eric Pettersen
-
5:25 PM
Features edited by Eric Pettersen
-
(diff)
-
5:19 PM
Ticket #7418 (BLAST AlphaFold database version 3: Bad Request) created by goddard@…
-
[…]
-
4:19 PM
Dev2022-8-8 created by Tom Goddard
-
4:18 PM
Ticket #7417 ("cofr" info misleading) created by Elaine Meng
-
[…]
-
4:13 PM
ChangeLog edited by Elaine Meng
-
(diff)
-
4:11 PM
DeveloperMeetings edited by Tom Goddard
-
(diff)
-
3:42 PM
Ticket #7416 (SEQCROW: crash in Tools / Quantum Chemistry / Build QM Input) created by goddard@…
-
[…]
-
3:22 PM
Ticket #7415 (SEQCROW: argument 2 has unexpected type 'MatchFlag') created by goddard@…
-
[…]
-
2:37 PM
Ticket #7414 (develop example bundles: missing bundle_api for bundle) created by gabsbi@…
-
[…]
-
1:55 PM
Ticket #7395 (Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with ...) closed by Tom Goddard
-
nonchimerax: I tried pressing all manner of modifier keys and home, and other non …
-
1:53 PM
Ticket #7412 (Crash in set_matrix after sym command) closed by Tom Goddard
-
can't reproduce: Maybe a graphics driver crash. Was setting a shader variable which …
-
1:26 PM
Ticket #7402 (Crash at startup showing Rapid Access) closed by Eric Pettersen
-
can't reproduce: The formats that ViewDockX can read are near the top of its Help page: …
-
11:21 AM
Ticket #7411 (Timeout for Opal model-loops web service) closed by Eric Pettersen
-
can't reproduce: Working now.
-
11:19 AM
Ticket #7408 (Graphics crash, macOS 12.5, AMD Radeon R9 M395) closed by Tom Goddard
-
nonchimerax: Apple Intel graphics driver crash.
Aug 7, 2022:
-
8:15 AM
Ticket #7413 (Crash in fork) created by xukui@…
-
[…]
Aug 6, 2022:
-
6:25 AM
Ticket #7412 (Crash in set_matrix after sym command) created by chimerax-bug-report@…
-
[…]
-
4:24 AM
Ticket #7411 (Timeout for Opal model-loops web service) created by chimerax-bug-report@…
-
[…]
Aug 5, 2022:
-
7:27 PM
Ticket #7410 (Crash creating SEQCROW QMenuBar in ARM tech preview) created by chimerax-bug-report@…
-
[…]
-
6:05 PM
Ticket #7409 (Probable SEQCROW/Qt crash) closed by Eric Pettersen
-
can't reproduce: SEQCROW makes extensive use of QMenuBar widgets whereas they are not …
-
5:53 PM
Ticket #7409 (Probable SEQCROW/Qt crash) created by chimerax-bug-report@…
-
[…]
-
5:26 PM
Ticket #7406 (Make the "close session" command reset to default graphics settings) closed by Tom Goddard
-
fixed: Fixed.
Using command "close session" instead of "close" will now …
-
5:02 PM
Ticket #7066 (Douse tool enhancements) closed by Eric Pettersen
-
fixed: Launcher implemented
-
3:17 PM
Ticket #7408 (Graphics crash, macOS 12.5, AMD Radeon R9 M395) created by chimerax-bug-report@…
-
[…]
-
2:09 PM
Ticket #7401 (Maps not aligned) closed by Tom Goddard
-
not a bug: Ok. I hope to put in a fix soon (next week?) that will automatically …
-
1:58 PM
Ticket #7407 (ArtiaX error after closing all models and opening new particle list) created by goddard@…
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
