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Jun 11, 2025:

10:59 PM Ticket #17967 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
12:00 PM Ticket #17966 (KVFinder on old MacOS) closed by Eric Pettersen: limitation: For ARM, has to be running MacOS 15 (for Intel, 14)
11:50 AM Ticket #17966 (KVFinder on old MacOS) created by chimerax-bug-report@…: […]
11:21 AM Ticket #17915 (Boltz structures distorted) closed by Tom Goddard: can't reproduce: Glad you got it to work. Maybe there was a conflict between a …
11:17 AM Ticket #17964 (Crash in swap_buffers) closed by Tom Goddard: nonchimerax: Graphics driver crash. User was showing side view.
10:52 AM Ticket #17785 (Combine into existing ID) closed by Eric Pettersen: fixed: Fix: …
9:51 AM Ticket #17965 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack involved _update_drawings
9:49 AM Ticket #17963 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:46 AM Ticket #17962 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by Eric Pettersen: duplicate
9:43 AM Ticket #17961 (SEQCROW open .out: max() arg is an empty sequence) closed by Eric Pettersen: duplicate: Follow up to #17946 with attachment
9:43 AM Ticket #17960 (SEQCROW open .out: max() arg is an empty sequence) closed by Eric Pettersen: duplicate: Follow up to #17946 with attachment
9:41 AM Ticket #17959 (SEQCROW open .out: max() arg is an empty sequence) closed by Eric Pettersen: duplicate: Follow up to #17946 with attachment
8:03 AM Ticket #17965 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
5:10 AM Ticket #17964 (Crash in swap_buffers) created by chimerax-bug-report@…: […]
3:03 AM Ticket #17963 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
2:30 AM Ticket #17962 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by chimerax-bug-report@…: […]

Jun 10, 2025:

11:40 PM Ticket #17952 (Qt display issue with ChimeraX) closed by Greg Couch: limitation: Excellent! Thank you for telling us how the problem was fixed.
10:05 PM Ticket #17961 (SEQCROW open .out: max() arg is an empty sequence) created by tejalsawant.329@…: […] molecule0.g98 (24).out
9:15 PM Ticket #17960 (SEQCROW open .out: max() arg is an empty sequence) created by tejalsawant.329@…: […] molecule0.g98 (21).out
9:14 PM Ticket #17959 (SEQCROW open .out: max() arg is an empty sequence) created by tejalsawant.329@…: […] molecule0.g98 (21).out
4:33 PM Ticket #9866 (Region/feature browsers need to react to non-self-generated region changes) closed by Eric Pettersen: fixed: Fix: …
11:56 AM Ticket #16654 (Session restore: ItemTable's selectionModel() is None (Parsing ...) closed by Zach Pearson: fixed: I am going to assume this was fixed.
11:55 AM Ticket #17925 (Could not find ffmpeg executable at ffmpeg) closed by Zach Pearson: fixed: Whoops. This problem had been fixed on the develop branch and I forgot …
11:42 AM Ticket #17958 (Add model id option to morph command) closed by Tom Goddard: fixed: Done. Added modelId option. If you try to use an existing model id …
11:40 AM Ticket #17958 (Add model id option to morph command) created by a.rohou@…: From: Alexis Rohou via ChimeraX-users <chimerax-users@…> …
11:25 AM Ticket #17957 (Intel/AMD graphics driver crash) closed by Tom Goddard: nonchimerax: This crash is from buggy Mac Intel graphics drivers. The bug report …
10:55 AM 2025-6-12 created by Tom Goddard
10:53 AM DeveloperMeetings edited by Tom Goddard: (diff)
10:38 AM Ticket #17957 (Intel/AMD graphics driver crash) created by decolibus@…: […]
9:29 AM Ticket #17956 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack involved molc.py
9:25 AM Ticket #17956 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
8:46 AM Ticket #17955 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: 1.3; last stack had draw_new_frame
8:45 AM Ticket #17954 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: 1.3; last stack had draw_new_frame
8:43 AM Ticket #17953 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack involved graphics.py
8:41 AM Ticket #17951 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
8:37 AM Ticket #17949 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack had _update_graphics_if_needed
7:55 AM Ticket #17955 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
7:55 AM Ticket #17954 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
7:27 AM Ticket #17953 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
5:00 AM Ticket #17952 (Qt display issue with ChimeraX) created by edouard.evangelisti@…: […]
3:09 AM Ticket #17951 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Jun 9, 2025:

9:53 PM Ticket #17417 (Debug mode not working on Windows) closed by Greg Couch: fixed: Got --debug to work, but not all debug output goes to {{{stdout or …
7:36 PM Ticket #17950 (isolde sim start sel: OpenMMException: Error compiling kerne) created by chimerax-bug-report@…: […]
6:49 PM Ticket #16201 (Crash opening .cif file) closed by Greg Couch: worksforme: No response. Likely fixed, but not possible to tell without original …
6:37 PM 2025-6-5 edited by Tom Goddard: (diff)
4:57 PM Dev2025-6-9 edited by Tom Goddard: (diff)
3:19 PM Dev2025-6-9 created by Tom Goddard
3:19 PM DeveloperMeetings edited by Tom Goddard: (diff)
1:10 PM Ticket #17949 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
12:04 PM Ticket #17947 (measure sasa: crash in spheres_surface_area) closed by Tom Goddard: can't reproduce: Looks like the measure sasa crash happened with this data file and …
11:56 AM Ticket #17944 (Crash hiding dust while drawing frame) closed by Tom Goddard: can't reproduce: Was computing connected triangles self.blist = …
11:49 AM Ticket #17943 (Crash in swap_buffers) closed by Tom Goddard: can't reproduce: Looks like a graphics driver crash. Could be a bug in the Nvidia …
10:04 AM Ticket #17948 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack has _update_graphics_if_needed
9:55 AM Ticket #17945 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:46 AM Ticket #17941 ('CCP4Grid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
9:46 AM Ticket #17948 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
9:45 AM Ticket #17940 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:44 AM Ticket #17939 (Crash at exit) closed by Eric Pettersen: fixed: Since we no longer call ~QApplication on Mac at exit, this report is moot.
9:42 AM Ticket #17938 (Crash in garbage collection) closed by Eric Pettersen: duplicate
9:41 AM Ticket #17937 (Crash in garbage collection) closed by Eric Pettersen: duplicate: Hi Sana, Thanks for reporting this problem. It has been fixed in …
9:38 AM Ticket #17936 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: No non-open/save stack trace in this one.
9:31 AM Ticket #17934 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack involved molc.py
9:24 AM Ticket #17933 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
8:46 AM Ticket #17947 (measure sasa: crash in spheres_surface_area) created by miyovan@…: […]
5:49 AM Ticket #17946 (SEQCROW open .out: max() arg is an empty sequence) created by tejalsawant.329@…: […]
4:03 AM Ticket #17945 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
3:49 AM Ticket #17944 (Crash hiding dust while drawing frame) created by chimerax-bug-report@…: […]
2:54 AM Ticket #17943 (Crash in swap_buffers) created by chimerax-bug-report@…: […]
2:45 AM Ticket #17942 (RFE: looping animated PNGs) created by Tristan Croll: […]
2:23 AM Ticket #17941 ('CCP4Grid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
1:16 AM Ticket #17940 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

Jun 8, 2025:

6:47 PM Ticket #17939 (Crash at exit) created by chimerax-bug-report@…: […]

Jun 7, 2025:

11:25 PM Ticket #17938 (Crash in garbage collection) created by sana2000@…: […]
7:52 PM Ticket #17937 (Crash in garbage collection) created by sana2000@…: […]
7:34 PM Ticket #17936 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
1:24 PM Ticket #17935 (Sequence viewer preference: 'seqview' is not in list) created by chimerax-bug-report@…: […]

Jun 6, 2025:

3:33 PM Ticket #17934 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
1:45 PM Ticket #17933 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
11:50 AM Ticket #17930 (Crash creating HtmlView profile) closed by Tom Goddard: duplicate: Probable Qt bug. Crashes in QWebEngineProfile(parent). We have 55 …
11:46 AM Ticket #17929 (Crash making status bar context current) closed by Tom Goddard: nonchimerax: There are 3 tracebacks all listing the same thread, all in different …
11:39 AM Ticket #17927 (Modified PAE) closed by Tom Goddard: not a bug: I don't understand. The predicted aligned error reflects confidence …
11:33 AM Ticket #17923 (Invalid texture upload) closed by Tom Goddard: can't reproduce: The error message "Invalid texture upload for 0x298dd5bc190 layer=0 …
11:15 AM Ticket #17932 (Boltz GUI expands to full window width if pasted sequence used) closed by Tom Goddard: fixed: Fixed in 1.10. The table for the predicted molecule assembly …
11:12 AM Ticket #17932 (Boltz GUI expands to full window width if pasted sequence used) created by goddard@…: […]
10:11 AM Ticket #17931 (Accessing deleted widget) closed by Eric Pettersen: can't reproduce: But suspicious that there are consecutive loggings of "Closest …
9:33 AM Ticket #17928 (Cannot instantiate sseq.structure) closed by Eric Pettersen: can't reproduce: I have no idea how "ui mousemode right label" could try to instantiate …
9:02 AM Ticket #17924 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen: duplicate
8:43 AM Ticket #17931 (Accessing deleted widget) created by chimerax-bug-report@…: […]
6:47 AM Ticket #17930 (Crash creating HtmlView profile) created by chimerax-bug-report@…: […]
4:21 AM Ticket #17929 (Crash making status bar context current) created by chimerax-bug-report@…: […]
2:52 AM Ticket #17928 (Cannot instantiate sseq.structure) created by chimerax-bug-report@…: […]
2:26 AM Ticket #17927 (Modified PAE) created by florear@…: […]
2:01 AM Ticket #17926 (SEQCROW: model.session is None while applying preset to morph) created by Tristan Croll: […]

Jun 5, 2025:

9:40 PM Ticket #17925 (Could not find ffmpeg executable at ffmpeg) created by fcofas@…: […]
7:29 PM Ticket #17924 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
5:36 PM Ticket #17916 (Segger: maxnr is None) closed by Tom Goddard: wontfix: The user entered a non-numeric value in the Segger maximum number of …
5:30 PM Ticket #17917 (Crash in glBufferSubData changing volume level) closed by Tom Goddard: can't reproduce: ChimeraX crashed in OpenGL graphics call glBufferSubData(). The …
5:23 PM Ticket #17742 (Sequence association incomplete) closed by Eric Pettersen: fixed: Fixed -- in the daily build only since it's a fairly complex change. …
4:58 PM Dev2025-6-5 created by Tom Goddard
4:54 PM DeveloperMeetings edited by Tom Goddard: (diff)
4:39 PM Ticket #17923 (Invalid texture upload) created by chimerax-bug-report@…: […]
4:31 PM Ticket #17716 (Toolshed installation of SEQCROW: subprocess.run("pip ..."): The ...) closed by Greg Couch: can't reproduce: Everything appears to work in the current release candidate.
4:07 PM Ticket #16830 (Toolshed not providing uninstalled info) closed by Greg Couch: fixed: The timeout for getting the available bundle information was too short.
4:01 PM Ticket #17009 (Registration page does not work) closed by Greg Couch: can't reproduce: Unable to reproduce
3:53 PM Ticket #17311 (ChimeraX startup messages: Failed to resolve 'webservices.rbvi.ucsf.edu') closed by Greg Couch: fixed: Put the check_for_updates call inside try/except
3:40 PM Ticket #16289 (Graduate Student Using ChimeraX - Encountering Issue w/ Downloading ...) closed by Greg Couch: fixed: Fixed in 1.11
2:31 PM Ticket #17922 (Q-score outputFile option gave traceback) created by Elaine Meng: […] 4427_6i7o_AY.mrc
1:48 PM Ticket #17921 (Find Cavities table accessing dead cavity model) closed by Eric Pettersen: can't reproduce
1:36 PM Ticket #17920 (Crash moving window between screens) closed by Eric Pettersen: duplicate
1:34 PM Ticket #17919 (mshMIGPerform crash) closed by Eric Pettersen: duplicate: Duplicate of #17777
1:29 PM Ticket #17918 (Difference in secondary structure display between Mol* 3D and ChimeraX) closed by Eric Pettersen: not a bug: Hi Paul, The .cif file you provided lacks information about secondary …
1:18 PM Ticket #17921 (Find Cavities table accessing dead cavity model) created by chimerax-bug-report@…: […]
12:59 PM Ticket #17914 (Crash using open/save dialog) closed by Eric Pettersen: duplicate: last stack trace had _update_graphics_if_needed
12:57 PM Ticket #17920 (Crash moving window between screens) created by chimerax-bug-report@…: […]
10:53 AM Ticket #17919 (mshMIGPerform crash) created by chimerax-bug-report@…: […]
10:51 AM Ticket #17912 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:47 AM Ticket #17889 (Device loss detected in Present()) closed by Tom Goddard: can't reproduce: Ok. We have several recent bug reports with "Device loss detected in …
10:45 AM Ticket #17910 (Crash in event loop) closed by Eric Pettersen: can't reproduce
10:38 AM Ticket #17909 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
10:33 AM Ticket #17908 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
10:33 AM Ticket #17907 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
10:32 AM Ticket #17906 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
10:31 AM Ticket #17905 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
8:49 AM Ticket #17918 (Difference in secondary structure display between Mol* 3D and ChimeraX) created by paul.kirchberger@…: […] [[Image(...)]] [[Image(...)]] …
7:48 AM Ticket #17917 (Crash in glBufferSubData changing volume level) created by syedasfarul.haque@…: […]
6:42 AM Ticket #17916 (Segger: maxnr is None) created by chimerax-bug-report@…: […]
6:16 AM Ticket #17915 (Boltz structures distorted) created by dominik.oberthuer@…: […]
2:44 AM Ticket #17914 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
2:23 AM Ticket #17913 (Problem installing XMAS) created by pascal.albanese@…: […]
12:52 AM Ticket #17912 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
12:23 AM Ticket #17911 (EMalign: AssertionError: Downsample must be less than input volume size) created by chimerax-bug-report@…: […]
12:18 AM Ticket #17910 (Crash in event loop) created by chimerax-bug-report@…: […]

Jun 4, 2025:

11:52 PM Ticket #17909 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
11:51 PM Ticket #17908 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
11:51 PM Ticket #17907 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
11:51 PM Ticket #17906 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
10:24 PM Ticket #17905 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:42 PM Ticket #17903 (Session save: Similar Structures: 'NoneType' object has no attribute 'hits') closed by Eric Pettersen: duplicate: Duplicate of #16968
5:37 PM Ticket #17902 (Crash moving window between screens) closed by Eric Pettersen: duplicate
4:39 PM Ticket #17890 (Foldseek: index is out of bounds) closed by Tom Goddard: fixed: Fixed. I updated ChimeraX to assume new Foldseek server results …
3:22 PM Ticket #17904 (Logging out while ChimeraX is running on Windows causes a crash report) closed by Tom Goddard: limitation: Not sure there is any way we can detect that a Windows ChimeraX crash …
3:06 PM Ticket #17904 (Logging out while ChimeraX is running on Windows causes a crash report) created by goddard@…: […]
2:43 PM Ticket #17903 (Session save: Similar Structures: 'NoneType' object has no attribute 'hits') created by chimerax-bug-report@…: […]
1:53 PM Ticket #17902 (Crash moving window between screens) created by chimerax-bug-report@…: […]
12:02 PM Ticket #17895 (viewer_option lambda returning None instead of option class) closed by Eric Pettersen: fixed: It's mystifying to me how this could occur (the setting value is not …
10:37 AM Ticket #17901 (Crash on exit in ~QAccessibleCache on Mac) closed by Eric Pettersen: can't reproduce
10:36 AM Ticket #17900 (Crash in _update_graphics_if_needed) closed by Eric Pettersen: can't reproduce: The tracebacks don't show the open/save dialogs being used here, …
10:05 AM Ticket #17898 (Crash in event loop) closed by Eric Pettersen: can't reproduce: at startup
9:59 AM Ticket #17896 (viewer_option lambda returning None instead of option class) closed by Eric Pettersen: duplicate
9:52 AM Ticket #17894 (Driver bug messes up UI) closed by Eric Pettersen: nonchimerax
9:50 AM Ticket #17893 (ISOLDE: ResidueStepper holding reference to dead model) closed by Eric Pettersen: duplicate
9:47 AM Ticket #17892 (Crash in event loop) closed by Eric Pettersen: can't reproduce: Crashed at startup
9:45 AM Ticket #17891 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack involved graphics\clipping.py
9:20 AM Ticket #17901 (Crash on exit in ~QAccessibleCache on Mac) created by chimerax-bug-report@…: […]
9:02 AM Ticket #17900 (Crash in _update_graphics_if_needed) created by chimerax-bug-report@…: […]
8:38 AM Ticket #17899 (UniProt sequences should retain numbering) created by Tristan Croll: […]
2:40 AM Ticket #17898 (Crash in event loop) created by chimerax-bug-report@…: […]
12:09 AM Ticket #17897 (QScore: model is None) created by chimerax-bug-report@…: […]

Jun 3, 2025:

11:35 PM Ticket #17896 (viewer_option lambda returning None instead of option class) created by chimerax-bug-report@…: […]
10:44 PM Ticket #17895 (viewer_option lambda returning None instead of option class) created by chimerax-bug-report@…: […]
10:36 PM Ticket #17894 (Driver bug messes up UI) created by chimerax-bug-report@…: […]
10:29 PM Ticket #17893 (ISOLDE: ResidueStepper holding reference to dead model) created by chimerax-bug-report@…: […]
10:06 PM Ticket #17892 (Crash in event loop) created by chimerax-bug-report@…: […]
7:52 PM Ticket #17891 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
6:37 PM Ticket #17890 (Foldseek: index is out of bounds) created by michelle.christie@…: […]
5:59 PM DeveloperMeetings edited by Tom Goddard: (diff)
5:58 PM 2025-6-5 edited by Tom Goddard: (diff)
5:56 PM Ticket #17888 (Test ChimeraX on Wayland) closed by Tom Goddard: not a bug: I see, we have specific environment variables that prevent ChimeraX …
4:31 PM Ticket #17889 (Device loss detected in Present()) created by gregdp@…: […]
3:46 PM Ticket #17887 (Test ChimeraX on Wayland) closed by Tom Goddard: duplicate: Duplicate of #17888
3:38 PM Ticket #17888 (Test ChimeraX on Wayland) created by goddard@…: […]
3:35 PM Ticket #17887 (Test ChimeraX on Wayland) created by goddard@…: […]
2:45 PM Ticket #17885 (Meeting: can not serialize 'numpy.uint8' object) closed by Tom Goddard: fixed: Fixed in 1.10 and 1.11. The color option to the meeting start and …
1:55 PM Ticket #17886 (isolde sim start sel: OpenMMException: There is no registered Platform ...) created by rkrishnan@…: […]
11:49 AM Ticket #17885 (Meeting: can not serialize 'numpy.uint8' object) created by chimerax-bug-report@…: […]
11:18 AM Ticket #17884 (Testing linux crash report requires email address) closed by Tom Goddard: fixed
11:15 AM Ticket #17642 (Prevent reporting of useless bug reports) closed by Tom Goddard: fixed: Done. I made Linux crashes require email in ChimeraX 1.11 daily build.
11:08 AM Ticket #17884 (Testing linux crash report requires email address) created by goddard@…: […]
10:33 AM Ticket #17883 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:21 AM Ticket #17879 (Similar Structures: save as TSV/CSV) closed by Tom Goddard: not a bug: The menu entry to save comma-separated values or tab-separated values …
10:17 AM 2025-6-5 created by Tom Goddard
10:16 AM DeveloperMeetings edited by Tom Goddard: (diff)
10:09 AM Ticket #17883 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
10:02 AM Ticket #17800 (Bond rotations need to respond to bond addition/deletion) closed by Eric Pettersen: can't reproduce: Actually, bond rotations do delete themselves when cycles are formed, …
9:40 AM Ticket #17882 (Crash accessing StructureSeq.structure) closed by Eric Pettersen: duplicate: Hi George, Thanks for reporting this problem. It is fixed in more …
9:13 AM Ticket #17882 (Crash accessing StructureSeq.structure) created by george.nyasha.chiduza@…: […]
9:13 AM Ticket #17881 (Crash in garbage collection) closed by Eric Pettersen: duplicate
8:56 AM Ticket #17878 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
8:41 AM Ticket #17876 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack had _update_graphics_if_needed
8:04 AM Ticket #17881 (Crash in garbage collection) created by chimerax-bug-report@…: […]
7:00 AM Ticket #17880 (RFE: position center of 2D label) created by Tristan Croll: […]
5:45 AM Ticket #17879 (Similar Structures: save as TSV/CSV) created by michelle.christie@…: […]
4:01 AM Ticket #17878 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
3:05 AM Ticket #17877 (Crash opening mmCIF) created by paula.schliebe@…: […]
2:36 AM Ticket #17876 (Crash using open/save dialog) created by chimerax-bug-report@…: […]

Jun 2, 2025:

6:40 PM Ticket #17875 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: This is a known crash and the ChimeraX Bug Report panel described what …
6:01 PM Ticket #17865 (Large number of structures → memory exhaustion) closed by Eric Pettersen: limitation: Glad you've almost gotten the script working. I'll probably have …
5:12 PM Ticket #17868 (AlphaFold: update best model) closed by Tom Goddard: fixed: Fixed in 1.11 daily builds, not in 1.10. I made ChimeraX put a second …
4:12 PM Dev2025-6-3 edited by Tom Goddard: (diff)
3:05 PM Dev2025-6-3 created by Tom Goddard
3:04 PM DeveloperMeetings edited by Tom Goddard: (diff)
1:57 PM Ticket #17875 (Crash on Mac waking from sleep) created by taic@…: […]
1:11 PM Ticket #17874 (alphafold pae: KeyError: 'pae is not a file in the archive') closed by Tom Goddard: fixed: Added in ChimeraX 1.11 a user friendly error message explaining that …
12:04 PM Ticket #17869 (draw_elements: access violation) closed by Tom Goddard: nonchimerax: Looks like an Intel graphics driver bug. Intel graphics driver …
12:00 PM Ticket #17856 (The cached device pixel ratio value was stale on window expose) closed by Eric Pettersen: can't reproduce: Thanks for the additional info Sasha. I'm pretty sure the message is …
11:52 AM Ticket #17873 (Widget setFocus loop) closed by Eric Pettersen: can't reproduce
11:50 AM Ticket #17872 (Crash destroying OpenGL context on exit) closed by Eric Pettersen: duplicate: From before the fix
11:49 AM Ticket #17871 (glDrawBuffer: invalid operation) closed by Eric Pettersen: limitation: Looks like remote display
11:47 AM Ticket #17870 (Crash destroying OpenGL context on exit) closed by Eric Pettersen: duplicate: From before the fix
11:40 AM Ticket #17867 (Crash in swap_buffers) closed by Eric Pettersen: limitation: Probable remote display
11:39 AM Ticket #17866 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack trace contained _update_graphics_if_needed
11:26 AM Ticket #17860 (Crash in compute_cap) closed by Tom Goddard: can't reproduce: Crashed in the C++ cap computation. Haven't seen this crash in the …
11:04 AM Dev2025-5-5 edited by Eric Pettersen: (diff)
9:45 AM Ticket #17874 (alphafold pae: KeyError: 'pae is not a file in the archive') created by o.bozkurt@…: […]
9:45 AM Ticket #17873 (Widget setFocus loop) created by chimerax-bug-report@…: […]
9:45 AM Ticket #17872 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…: […]
9:45 AM Ticket #17871 (glDrawBuffer: invalid operation) created by chimerax-bug-report@…: […]
9:45 AM Ticket #17870 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…: […]
9:45 AM Ticket #17869 (draw_elements: access violation) created by chimerax-bug-report@…: […]
9:45 AM Ticket #17868 (AlphaFold: update best model) created by hemmecl@…: […]
9:43 AM Ticket #17867 (Crash in swap_buffers) created by chimerax-bug-report@…: […]

May 31, 2025:

2:34 PM Ticket #17866 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
12:31 PM Ticket #17865 (Large number of structures → memory exhaustion) created by alexandra.zahradnikova@…: […]
7:01 AM Ticket #17864 (Crash in event loop / toolshed load) created by 2023020518@…: […]

May 30, 2025:

6:12 PM Ticket #17863 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
6:11 PM Ticket #17862 (Crash in StructureSeq.structure) closed by Eric Pettersen: can't reproduce
6:10 PM Ticket #17861 (Crash saving atomic session state) closed by Eric Pettersen: can't reproduce: Could be the garbage-collection bug that was fixed.
1:02 PM Ticket #17863 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
12:57 PM Ticket #17862 (Crash in StructureSeq.structure) created by chimerax-bug-report@…: […]
12:48 PM Ticket #17861 (Crash saving atomic session state) created by chimerax-bug-report@…: […]
12:04 PM Ticket #17860 (Crash in compute_cap) created by chimerax-bug-report@…: […]
11:58 AM Ticket #17832 (LocScale-SURFER bundle development for Mac OS) closed by Tom Goddard: limitation
10:54 AM Ticket #17859 (Close request on destroyed tool window) closed by Eric Pettersen: can't reproduce
10:49 AM Ticket #17859 (Close request on destroyed tool window) created by chimerax-bug-report@…: […]
10:41 AM Ticket #17803 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
10:16 AM Ticket #17858 (Graphics hardware encountered an error and was reset) closed by Eric Pettersen: duplicate
10:01 AM Ticket #17857 (Cannot save command history: No space left on device) closed by Eric Pettersen: nonchimerax
9:49 AM Ticket #17855 (Crash in event loop) closed by Eric Pettersen: can't reproduce
9:44 AM Ticket #17854 (Crash in event loop) closed by Eric Pettersen: can't reproduce: Guessing this was run from the dmg because of all the …
9:41 AM Ticket #17858 (Graphics hardware encountered an error and was reset) created by chimerax-bug-report@…: […]
8:12 AM Ticket #17857 (Cannot save command history: No space left on device) created by chimerax-bug-report@…: […]
12:49 AM Ticket #17856 (The cached device pixel ratio value was stale on window expose) created by alexandra.zahradnikova@…: […]
12:40 AM Ticket #17855 (Crash in event loop) created by chimerax-bug-report@…: […]

May 29, 2025:

7:49 PM Ticket #17854 (Crash in event loop) created by chimerax-bug-report@…: […]
4:51 PM Ticket #17853 (Remember render by attribute thresholds when multiple models chosen) created by Willow.Coyote-Maestas@…: Render by attribute remembers the thresholds and colors last used for …
3:05 PM Ticket #17778 (ChimeraX 1.9 SHA256 hash incorrrect) closed by Zach Pearson: fixed: Should be fixed.
2:36 PM Ticket #17851 (Toolbar→Molecule Display→Sequence does not handle blank chain ID) closed by Eric Pettersen: fixed: Fixed. Fix available in next daily build and release candidate, Fix: …
2:22 PM Ticket #17852 (Crash in event loop) closed by Eric Pettersen: can't reproduce
2:12 PM Ticket #17838 (vr roomCamera: AttributeError: 'NoneType' object has no attribute ...) closed by Tom Goddard: fixed: Fixed. User tried to enable VR room camera when VR had not been …
2:10 PM Ticket #17850 (Ticket Updated: INC-171399 - Possible bug on installation) closed by Eric Pettersen: not a bug
12:27 PM Ticket #17852 (Crash in event loop) created by chimerax-bug-report@…: […]
11:16 AM Ticket #17851 (Toolbar→Molecule Display→Sequence does not handle blank chain ID) created by ddrichma@…: […]
11:14 AM Ticket #17849 (Various OpenGL errors) closed by Tom Goddard: nonchimerax: Possibly remote display or graphic driver problem. Can't get driver …
11:11 AM Ticket #17846 (Crash on Mac waking from sleep) closed by Tom Goddard: duplicate: The ChimeraX Bug Reporter panel explains what we know about this crash …
11:11 AM Ticket #17850 (Ticket Updated: INC-171399 - Possible bug on installation) created by helpdesk@…: […]
11:10 AM Ticket #17848 (Ticket Updated: INC-171399 - Possible bug on installation) closed by Eric Pettersen: not a bug
11:07 AM Ticket #17849 (Various OpenGL errors) created by chimerax-bug-report@…: […]
11:04 AM Ticket #17848 (Ticket Updated: INC-171399 - Possible bug on installation) created by helpdesk@…: […]
10:58 AM Ticket #17847 ('pip install pyKVFinder' fails with empty error message) closed by Eric Pettersen: duplicate: Duplicate of #17229; using two-month-old version
10:51 AM Ticket #17845 (Re: INC-171399 Possible bug on installation) closed by Eric Pettersen: not a bug: Actually a follow up to #17755; will add the info to that ticket
10:43 AM Ticket #17844 (FoldSeek: Permission denied writing temp file) closed by Tom Goddard: duplicate: This foldseek permission error is fixed in the ChimeraX 1.10 release …
10:36 AM Ticket #17843 ('pip install pyKVFinder' fails with empty error message) closed by Eric Pettersen: duplicate: Duplicate of #17229
10:30 AM Ticket #17842 (Crash in event loop) closed by Eric Pettersen: can't reproduce: After "toolshed show", though that might not be relevant
10:24 AM Ticket #17841 ('ArrayGridData' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
10:21 AM Ticket #17840 (Crash in event loop) closed by Eric Pettersen: can't reproduce
10:18 AM Ticket #17839 (Maestro: KeyError: 'i_m_residue_number') closed by Eric Pettersen: duplicate: Duplicate of #9215
10:17 AM Ticket #15588 (Maestro: KeyError: 'i_m_residue_number') closed by Eric Pettersen: can't reproduce: No feedback received
10:06 AM Ticket #17837 (Crash at exit) closed by Eric Pettersen: duplicate: From before the fix went in
10:04 AM Ticket #17836 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce
9:48 AM Ticket #17847 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…: […]
7:38 AM Ticket #17846 (Crash on Mac waking from sleep) created by guillermo.montoya@…: […]
7:15 AM Ticket #17845 (Re: INC-171399 Possible bug on installation) created by helpdesk@…: […]
7:04 AM Ticket #17844 (FoldSeek: Permission denied writing temp file) created by semihpehlivan@…: […]
3:56 AM Ticket #17843 ('pip install pyKVFinder' fails with empty error message) created by chimerax-bug-report@…: […]
3:55 AM Ticket #17842 (Crash in event loop) created by chimerax-bug-report@…: […]
3:35 AM Ticket #17841 ('ArrayGridData' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
2:53 AM Ticket #17840 (Crash in event loop) created by chimerax-bug-report@…: […]
2:19 AM Ticket #17839 (Maestro: KeyError: 'i_m_residue_number') created by chimerax-bug-report@…: […]
1:11 AM Ticket #17838 (vr roomCamera: AttributeError: 'NoneType' object has no attribute ...) created by chimerax-bug-report@…: […]
12:04 AM Ticket #17837 (Crash at exit) created by chimerax-bug-report@…: […]

May 28, 2025:

6:36 PM Ticket #17836 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
12:03 PM Ticket #17835 (Crash in Qt event loop running AlphaFold prediction) closed by Tom Goddard: can't reproduce
11:54 AM Ticket #17835 (Crash in Qt event loop running AlphaFold prediction) created by chimerax-bug-report@…: […]
11:47 AM Ticket #17834 (Session save: ItemTable's selectionModel() is None) closed by Eric Pettersen: duplicate: Duplicate of #16653
11:42 AM Ticket #17834 (Session save: ItemTable's selectionModel() is None) created by chimerax-bug-report@…: […]
11:33 AM Ticket #17833 (Unknown error) closed by Eric Pettersen: can't reproduce: Maybe the tools panels were blank? Dunno.
11:29 AM Ticket #17833 (Unknown error) created by chimerax-bug-report@…: […]
11:05 AM Ticket #2929 (ChimeraX header files not present in CentOS RPM) closed by Greg Couch: fixed: CString.h is in site-packages/chimerax/core/include/chutil/CString.h
10:42 AM Ticket #17825 (Read MRC: cannot convert float NaN to integer) closed by Tom Goddard: not a bug: I believe this ChimeraX error means the map file …
10:16 AM Ticket #17828 (Segger: invalid literal for int) closed by Tom Goddard: not a bug: User apparently pasted "6vop extract #1 region 0,360,0,360,0,360\n" …
10:14 AM Ticket #17827 (Various OpenGL errors) closed by Tom Goddard: nonchimerax: Graphics driver bug.
9:43 AM Ticket #17831 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce
9:40 AM Ticket #17830 (MemoryError opening mmCIF files) closed by Eric Pettersen: duplicate
9:23 AM Ticket #17826 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack was in _update_graphics_if_needed
5:48 AM Ticket #17832 (LocScale-SURFER bundle development for Mac OS) created by A.Bharadwaj@…: […]
4:07 AM Ticket #17831 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
3:39 AM Ticket #17830 (MemoryError opening mmCIF files) created by chimerax-bug-report@…: […]
2:40 AM Ticket #17829 (Crash at startup) created by zhiling9921@…: […]
1:37 AM Ticket #17828 (Segger: invalid literal for int) created by chimerax-bug-report@…: […]
1:03 AM Ticket #17827 (Various OpenGL errors) created by chimerax-bug-report@…: […]
12:31 AM Ticket #17826 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
12:13 AM Ticket #17825 (Read MRC: cannot convert float NaN to integer) created by basavraj.khanppnavar@…: […]

May 27, 2025:

6:36 PM Ticket #17817 (Mutation Scores: NotImplementedError: cannot remove artist) closed by Tom Goddard: fixed: Fixed in ChimeraX 1.10 release candidates and daily builds dated May …
6:06 PM Ticket #17824 (Swapna and other operations slow) created by matthias.vorlaender@…: Dear ChimeraX team, I have noticed that on some structure I am …
5:28 PM Ticket #17823 (MemoryError opening mmCIF files) closed by Eric Pettersen: duplicate: Hi, This memory problem has been fixed in recent versions of …
4:57 PM Ticket #17823 (MemoryError opening mmCIF files) created by s3988903@…: […]
4:00 PM Ticket #17820 ('MRCGrid' object has no attribute 'dicom_data') closed by Eric Pettersen: duplicate
3:59 PM Ticket #17819 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate
3:06 PM Ticket #17822 (Allow installing experimental boltz branches for testing) closed by Tom Goddard: fixed: Fixed in 1.10. Added "branch" option to boltz install command.
3:05 PM Ticket #17822 (Allow installing experimental boltz branches for testing) created by Tom Goddard: Would be convenient to be able to specify a git branch of boltz to …
3:00 PM Ticket #17821 (Boltz GUI is ignoring new install location) closed by Tom Goddard: fixed: Fixed in 1.10. It was using the Boltz install location remembered in …
2:57 PM Ticket #17821 (Boltz GUI is ignoring new install location) created by goddard@…: […]
2:53 PM Ticket #17813 (Building add_charge fails with metadata error) closed by Zach Pearson: fixed: Should be fixed
2:32 PM Ticket #17818 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack trace was in molobject.py
2:21 PM Ticket #17814 (Crash in Qt event loop after opening/displaying MRC file) closed by Tom Goddard: can't reproduce: Crash was in Qt. Not enough info to tell what happened. Probably had …
2:14 PM Ticket #17815 (Many setGeometry errors → crash) closed by Eric Pettersen: can't reproduce: Maybe moving window to smaller display? Dunno.
2:09 PM Ticket #17812 (Crash at exit) closed by Eric Pettersen: duplicate
2:08 PM Ticket #17811 (Crash at exit) closed by Eric Pettersen: can't reproduce
2:05 PM Ticket #17810 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
2:02 PM Ticket #17806 (Crash moving window between screens) closed by Tom Goddard: can't reproduce: Seems to be a Qt bug moving window between screens on Windows, …
2:00 PM Ticket #17809 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen: can't reproduce
1:58 PM Ticket #17808 (Crash in graphics driver during Qt drawing) closed by Eric Pettersen: can't reproduce
1:56 PM Ticket #17807 (Crash in python_instances_of_class saving session) closed by Eric Pettersen: can't reproduce
1:52 PM Ticket #17805 (Crash destroying OpenGL context on exit) closed by Eric Pettersen: duplicate: From before the fix
1:50 PM Ticket #17804 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
1:33 PM Ticket #17802 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
1:32 PM Ticket #17801 (Crash at exit in Qt cleanup routines) closed by Eric Pettersen: can't reproduce
1:24 PM Ticket #17799 (Dead model in Find Cavities table) closed by Eric Pettersen: can't reproduce
1:22 PM Ticket #17798 (Dead model in Find Cavities table) closed by Eric Pettersen: can't reproduce
1:14 PM Ticket #17797 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Last stack was in _update_graphics_if_needed
1:12 PM Ticket #17796 (AddH: More than 2 coplanar positions specified) closed by Eric Pettersen: not a bug: Bad PDB file
1:11 PM Ticket #17795 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
1:10 PM Ticket #17794 (Crash on exit) closed by Eric Pettersen: duplicate: From about 4 days before the fix went in.
1:07 PM Ticket #17793 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) closed by Eric Pettersen: duplicate: Hi, Thanks for reporting this problem. It was fixed about two days …
12:46 PM Ticket #17820 ('MRCGrid' object has no attribute 'dicom_data') created by chimerax-bug-report@…: […]
12:34 PM Ticket #17819 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]
12:26 PM Ticket #17757 ("move": distance is None while undo is not None) closed by Tom Goddard: fixed: Fixed in 1.11. I made the move command not support undo if frames is …
12:02 PM Ticket #17791 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
12:01 PM Ticket #17790 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
11:14 AM Ticket #17788 (Deep recursion in find_close_points_boxes) closed by Tom Goddard: limitation: Maybe this got around the PDB reader check for NaN/Inf because the …
11:13 AM Ticket #17789 (Bad PDB file) closed by Eric Pettersen: nonchimerax
11:08 AM DeveloperMeetings edited by Tom Goddard: (diff)
10:20 AM Ticket #17786 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate
9:40 AM Ticket #17818 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
8:05 AM Ticket #17817 (Mutation Scores: NotImplementedError: cannot remove artist) created by Ever.ODonnell@…: […]
5:21 AM Ticket #17816 (Load MD atom subsets) created by Tristan Croll: […]
2:39 AM Ticket #17815 (Many setGeometry errors → crash) created by chimerax-bug-report@…: […]
12:12 AM Ticket #17814 (Crash in Qt event loop after opening/displaying MRC file) created by chimerax-bug-report@…: […]

May 26, 2025:

9:41 PM Ticket #17813 (Building add_charge fails with metadata error) created by Greg Couch: Building the develop branch of ChimeraX from scratch fails with: […]
12:16 PM Ticket #17812 (Crash at exit) created by chimerax-bug-report@…: […]
11:59 AM Ticket #17811 (Crash at exit) created by chimerax-bug-report@…: […]
11:17 AM Ticket #17810 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
11:01 AM Ticket #17809 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…: […]
5:10 AM Ticket #17808 (Crash in graphics driver during Qt drawing) created by chimerax-bug-report@…: […]
3:48 AM Ticket #17807 (Crash in python_instances_of_class saving session) created by chimerax-bug-report@…: […]
2:43 AM Ticket #17806 (Crash moving window between screens) created by chimerax-bug-report@…: […]
1:34 AM Ticket #17805 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…: […]
1:32 AM Ticket #17804 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
1:24 AM Ticket #17803 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
12:28 AM Ticket #17802 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

May 25, 2025:

7:10 PM Ticket #17801 (Crash at exit in Qt cleanup routines) created by chimerax-bug-report@…: […]
6:59 PM Ticket #17800 (Bond rotations need to respond to bond addition/deletion) created by chimerax-bug-report@…: […]
6:27 AM Ticket #17799 (Dead model in Find Cavities table) created by chimerax-bug-report@…: […]
6:26 AM Ticket #17798 (Dead model in Find Cavities table) created by chimerax-bug-report@…: […]
3:18 AM Ticket #17797 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
2:36 AM Ticket #17796 (AddH: More than 2 coplanar positions specified) created by chimerax-bug-report@…: […]

May 24, 2025:

10:11 PM Ticket #17795 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
12:14 PM Ticket #17736 (question about ver.1.10 for Win) closed by Greg Couch: fixed
9:54 AM Ticket #17794 (Crash on exit) created by chimerax-bug-report@…: […]
6:53 AM Ticket #17793 (AtomicShapeDrawing: AttributeError: 'list' object has no attribute ...) created by alessandrorevenge@…: […]
6:19 AM Ticket #17792 (Edge case PDB file freezes ChimeraX) created by Roden Deng Luo: […] difference_summary.txt …
2:50 AM Ticket #17791 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]

May 23, 2025:

11:13 PM Ticket #17790 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
10:03 PM Ticket #17789 (Bad PDB file) created by chimerax-bug-report@…: […]
3:50 PM Ticket #17788 (Deep recursion in find_close_points_boxes) created by chimerax-bug-report@…: […]
3:22 PM Ticket #17787 (Installing a bundle replaces PyPi packages with different versions) created by goddard@…: […]
2:01 PM Ticket #17786 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]
1:10 PM Ticket #17735 (xr is None) closed by Tom Goddard: fixed: Fixed. Made "xr off" do nothing if the openxr camera is not the …
11:27 AM Ticket #17785 (Combine into existing ID) created by chimerax-bug-report@…: […]
10:54 AM Ticket #17784 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
10:53 AM Ticket #17783 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
10:52 AM Ticket #17782 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce: Doesn't crash with 2gs6. Must have been the small molecule they were using.
10:22 AM Ticket #17784 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
10:21 AM Ticket #17783 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
10:19 AM Ticket #17782 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
9:43 AM Ticket #17781 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Indian English locale; activating trigger in last stack trace
9:40 AM Ticket #17780 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:39 AM Ticket #17779 (Crash in garbage collection) closed by Eric Pettersen: duplicate
9:37 AM Ticket #17777 (mshMIGPerform crash) closed by Eric Pettersen: can't reproduce: I wonder if this mshMIGPerform thing is going to become our bete noire …
9:18 AM Ticket #17781 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
5:43 AM Ticket #17780 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
1:49 AM Ticket #17779 (Crash in garbage collection) created by chimerax-bug-report@…: […]
1:27 AM Ticket #17778 (ChimeraX 1.9 SHA256 hash incorrrect) created by cb3009@…: […]

May 22, 2025:

10:18 PM Ticket #15897 (Core include files not found) closed by Zach Pearson: fixed
7:52 PM Ticket #17777 (mshMIGPerform crash) created by chimerax-bug-report@…: […]
6:45 PM Ticket #17776 (Boltz installation info contains non-UTF-8 character) closed by Tom Goddard: fixed: Fixed in 1.10. Used getpreferredencoding() to decode pip and boltz …
5:52 PM Ticket #17770 (Crash in ses_surface_geometry) closed by Tom Goddard: limitation: The computer only has 3 or 4 GB of memory and they tried to compute …
5:40 PM Ticket #17761 (Device loss detected in Present()) closed by Tom Goddard: can't reproduce: All the error messages come from Qt. Device loss detected in …
5:14 PM Ticket #17704 (Linux ChimeraX can't find ffmpeg) closed by Zach Pearson: fixed
4:52 PM Ticket #17087 (Postinst or prerm script issue related to GLIBC version) closed by Greg Couch: fixed: Change the Ubuntu and Red Hat packages to specify a minimum version of …
4:37 PM Ticket #17766 (Session restore: OverflowError: int too big to convert) closed by Greg Couch: can't reproduce: Need data to reproduce.
3:52 PM 2025-5-22 created by Tom Goddard
3:48 PM DeveloperMeetings edited by Tom Goddard: (diff)
3:17 PM Ticket #17776 (Boltz installation info contains non-UTF-8 character) created by chimerax-bug-report@…: […]
2:57 PM Ticket #17743 (No compiled Mac Intel version of pyKVFinder) reopened by Eric Pettersen: The pyKVFinder maintainers are working on the problem, but they have a …
2:55 PM Ticket #17775 (No compiled Mac Intel version of pyKVFinder) closed by Eric Pettersen: duplicate: Hi Rachel, Thanks for reporting this problem. The issue is that part …
2:46 PM Ticket #17774 (Crash in garbage collection) closed by Eric Pettersen: duplicate
2:45 PM Ticket #17773 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
1:46 PM Ticket #17772 (Crash moving window between screens) closed by Eric Pettersen: duplicate
12:47 PM Ticket #17775 (No compiled Mac Intel version of pyKVFinder) created by rachel.whittlesey@…: […]
12:36 PM Ticket #17771 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: US locale; _update_graphics_if_needed in last stack trace
11:25 AM Ticket #17774 (Crash in garbage collection) created by chimerax-bug-report@…: […]
10:48 AM Ticket #17773 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
10:44 AM Ticket #17768 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:43 AM Ticket #17767 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Chinese locale; _update_drawings in last stack trace
10:33 AM Ticket #17765 (No compiled Mac Intel version of pyKVFinder) closed by Eric Pettersen: duplicate: Have asked pyKVFinder maintainers to provide Intel binaries and they …
10:30 AM Ticket #17764 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
10:29 AM Ticket #17763 (Crash in garbage collection) closed by Eric Pettersen: duplicate
10:21 AM Ticket #17762 (Crash auto-starting tool during movie recording) closed by Eric Pettersen: can't reproduce: Used the attached script to test moving recording during startup on …
9:26 AM Ticket #17772 (Crash moving window between screens) created by chimerax-bug-report@…: […]
9:17 AM Ticket #17771 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
8:58 AM Ticket #17760 (Crash in event loop) closed by Eric Pettersen: can't reproduce: Was after running some Boltz predictions, but not necessarily related.
8:54 AM Ticket #17770 (Crash in ses_surface_geometry) created by chimerax-bug-report@…: […]
8:51 AM Ticket #17769 (SEQCROW: ORCA output file: could not convert string to float) created by chimerax-bug-report@…: […]
8:30 AM Ticket #17768 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
7:29 AM Ticket #17767 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
5:15 AM Ticket #17766 (Session restore: OverflowError: int too big to convert) created by chimerax-bug-report@…: […]
5:00 AM Ticket #17765 (No compiled Mac Intel version of pyKVFinder) created by chimerax-bug-report@…: […]
4:32 AM Ticket #17764 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
4:17 AM Ticket #17763 (Crash in garbage collection) created by chimerax-bug-report@…: […]
1:44 AM Ticket #17762 (Crash auto-starting tool during movie recording) created by chimerax-bug-report@…: […]
12:21 AM Ticket #17761 (Device loss detected in Present()) created by chimerax-bug-report@…: […]

May 21, 2025:

8:17 PM Ticket #17760 (Crash in event loop) created by chimerax-bug-report@…: […]
6:19 PM Ticket #17759 (Crash moving window between screens) closed by Eric Pettersen: duplicate
6:17 PM Ticket #17758 (old ChimeraX cannot open new session) closed by Eric Pettersen: limitation
5:04 PM Ticket #17759 (Crash moving window between screens) created by chimerax-bug-report@…: […]
4:18 PM Ticket #17664 (superqt TypeError: 'float' object cannot be interpreted as an integer) reopened by Eric Pettersen: I think the issue is that it's not finding 'ffmpeg', i.e. ffmpeg is …
3:18 PM Ticket #17664 (superqt TypeError: 'float' object cannot be interpreted as an integer) closed by Greg Couch: worksforme: How did you install ChimeraX? ffmpeg is listed as a dependency in the …
3:06 PM Ticket #17660 (Crash opening mmCIF) closed by Greg Couch: duplicate: Probably fixed. Would need the mmCIF file to know for sure.
3:05 PM Ticket #17659 (Crash opening mmCIF) closed by Greg Couch: duplicate: Probably fixed. Would need the mmCIF file to know for sure.
2:54 PM Ticket #17646 (Problems with imports on Linux) closed by Greg Couch: can't reproduce: I was unable to reproduce this on Ubuntu 24.04 using the input.gro …
2:53 PM Ticket #17758 (old ChimeraX cannot open new session) created by chimerax-bug-report@…: […]
1:21 PM Ticket #17757 ("move": distance is None while undo is not None) created by chimerax-bug-report@…: […]
10:21 AM Ticket #17756 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate
10:00 AM Ticket #17756 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by chimerax-bug-report@…: […]
9:21 AM Ticket #17723 (Crash in event loop) closed by Eric Pettersen: fixed: Jiacheng's reply (sent to chimerax-bugs-admin): Hi, I didn't do …
9:10 AM Ticket #17755 (Possible bug on installation) closed by Eric Pettersen: not a bug: Hi Tim, Thanks for reporting this problem. The issue is that you …
9:01 AM Ticket #17754 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
8:56 AM Ticket #17751 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
8:55 AM Ticket #17750 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Malaysian locale; check_for_drawing_change in last stack trace
8:26 AM Ticket #17755 (Possible bug on installation) created by tblower@…: […] [[Image(...)]]
7:17 AM Ticket #17754 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
7:14 AM Ticket #17753 (MemoryError saving session) created by chimerax-bug-report@…: […]
6:43 AM Ticket #17752 (Crash in event loop) created by 2457097088@…: […]
5:43 AM Ticket #17751 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]

May 20, 2025:

11:20 PM Ticket #17750 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
5:39 PM ChangeLog edited by Eric Pettersen: (diff)
5:39 PM ChangeLog edited by Eric Pettersen: (diff)
5:38 PM ChangeLog edited by Eric Pettersen: (diff)
5:38 PM ChangeLog edited by Eric Pettersen: (diff)
5:03 PM Ticket #17749 (Alphafold interfaces command ignores distance and max_pae options) closed by Tom Goddard: fixed: Fixed. The distance and max_pae parameters were not being passed to …
4:56 PM Ticket #17749 (Alphafold interfaces command ignores distance and max_pae options) created by gbelov@…: […]
1:59 PM Ticket #17748 (Unknown crash) closed by Eric Pettersen: can't reproduce: Be nice if there weren't all anonymous.
1:55 PM Ticket #17747 (Unknown crash) closed by Eric Pettersen: can't reproduce: Yet another one.
1:53 PM Ticket #17746 (Unknown crash) closed by Eric Pettersen: can't reproduce: Also can't make heads or tails of this one. The NSAccessibility APIs …
1:51 PM Ticket #17745 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
1:49 PM Ticket #17744 (Unknown crash) closed by Eric Pettersen: can't reproduce: Having trouble identifying a culprit from the dump info and log.
1:16 PM Ticket #17743 (No compiled Mac Intel version of pyKVFinder) closed by Eric Pettersen: nonchimerax: Hi Kristina, Thanks for reporting this problem. Find Cavities uses …
12:26 PM Ticket #17748 (Unknown crash) created by chimerax-bug-report@…: […]
12:21 PM Ticket #17747 (Unknown crash) created by chimerax-bug-report@…: […]
11:46 AM Ticket #17741 (Crash in event loop) closed by Eric Pettersen: can't reproduce
11:46 AM Ticket #17740 (Crash destroying OpenGL context on exit) closed by Eric Pettersen: duplicate: From before the fix went in
11:42 AM Ticket #17738 (UnicodeDecodeError opening PDB file) closed by Eric Pettersen: can't reproduce: Probably a Windows codec; would need the file to reproduce
11:37 AM Ticket #17737 (Crash restoring many alignments from session) closed by Eric Pettersen: can't reproduce
11:32 AM Ticket #17734 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: French locale; File "C:\Program Files\ChimeraX …
11:31 AM Ticket #17733 (HBonds: acc_phi_psi() takes N positional arguments) closed by Eric Pettersen: can't reproduce: AFAIK, bad structure
10:25 AM Ticket #17746 (Unknown crash) created by chimerax-bug-report@…: […]
10:23 AM Ticket #17732 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: Slovenian locale; _update_graphics_if_needed in last stack trace
10:14 AM Ticket #17731 (Find Cavities crash) closed by Eric Pettersen: duplicate
10:12 AM Ticket #17730 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: US locale; last stack trace contained block_redraw
10:10 AM Ticket #17729 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
10:08 AM Ticket #17728 (Crash in chem_group on Windows) closed by Eric Pettersen: can't reproduce
10:01 AM Ticket #17745 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
10:01 AM Ticket #17727 (Crash using open/save dialog) closed by Eric Pettersen: can't reproduce: US locale; also stack trace for draw_new_frame
9:59 AM Ticket #17726 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:38 AM Ticket #17720 (Crash in event loop) closed by Eric Pettersen: can't reproduce
9:37 AM Ticket #17719 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:36 AM Ticket #17718 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
9:33 AM Ticket #17717 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) closed by Eric Pettersen: duplicate: Hi Jeffrey, Thanks for reporting this problem. The version of …
9:31 AM Ticket #17744 (Unknown crash) created by chimerax-bug-report@…: […]
8:11 AM Ticket #17743 (No compiled Mac Intel version of pyKVFinder) created by kristina_spiru@…: […]
8:05 AM Ticket #17742 (Sequence association incomplete) created by Tristan Croll: […] alignment_problem.zip
7:32 AM Ticket #17741 (Crash in event loop) created by chimerax-bug-report@…: […]
6:44 AM Ticket #17740 (Crash destroying OpenGL context on exit) created by chimerax-bug-report@…: […]
6:37 AM Ticket #17739 (Session restore: msgpack: MemoryError: Unable to enlarge internal buffer.) created by chimerax-bug-report@…: […]
6:32 AM Ticket #17738 (UnicodeDecodeError opening PDB file) created by chimerax-bug-report@…: […]

May 19, 2025:

10:29 PM Ticket #17737 (Crash restoring many alignments from session) created by chimerax-bug-report@…: […]
8:54 PM Ticket #17699 (Graphics hardware encountered an error and was reset) closed by Tom Goddard: nonchimerax: Same reporter, same crash as #17700
8:53 PM Ticket #17700 (Graphics hardware encountered an error and was reset) closed by Tom Goddard: nonchimerax: As the ChimeraX bug report panel said: "This is a known crash that we …
8:45 PM Ticket #17701 (AF3 pLDDT score not displaced correctly in ChimeraX) closed by Tom Goddard: not a bug: We discussed this multiple times on the ChimeraX mailing list in the …
8:26 PM Ticket #17710 (Crash opening AlphaFold prediction while others running) closed by Tom Goddard: can't reproduce
8:12 PM Ticket #17736 (question about ver.1.10 for Win) created by kiida@…: […]
6:19 PM Ticket #17735 (xr is None) created by chimerax-bug-report@…: […]
6:11 PM Ticket #17715 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
6:10 PM Ticket #17714 (Regular PDB file opened in MD Viewer) closed by Eric Pettersen: duplicate
4:00 PM Ticket #17711 (Crash using open dialog) closed by Eric Pettersen: can't reproduce
3:48 PM Ticket #17708 (Crash in event loop) closed by Eric Pettersen: can't reproduce
3:46 PM Ticket #17707 (Crash using open dialog) closed by Eric Pettersen: can't reproduce: Indian English; also was redrawing graphics
3:03 PM Ticket #17734 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
2:43 PM Ticket #17706 (Crash using open dialog) closed by Eric Pettersen: can't reproduce: US locale, no additional traceback (or multiple tracebacks)
2:40 PM Ticket #17705 (Crash using open dialog) closed by Eric Pettersen: can't reproduce
2:37 PM Ticket #17703 (UnicodeDecodeError: 'utf-8' codec can't decode byte) closed by Eric Pettersen: duplicate: More recent versions of ChimeraX also try utf-16 and utf-32
2:32 PM Ticket #17702 (Crash in event loop) closed by Eric Pettersen: can't reproduce
1:36 PM Ticket #17698 (Crash using open dialog) closed by Eric Pettersen: can't reproduce: Chinese locale There was a non-save-dialog traceback at the end, as usual.
1:24 PM Ticket #17697 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Eric Pettersen: duplicate
1:12 PM Ticket #17696 (Crash on Mac waking from sleep) closed by Eric Pettersen: duplicate
12:14 PM Ticket #17733 (HBonds: acc_phi_psi() takes N positional arguments) created by chimerax-bug-report@…: […]
12:09 PM Ticket #17732 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
7:18 AM Ticket #17731 (Find Cavities crash) created by chimerax-bug-report@…: […]
7:15 AM Ticket #17730 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
6:34 AM Ticket #17729 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
6:17 AM Ticket #17728 (Crash in chem_group on Windows) created by chimerax-bug-report@…: […]
6:10 AM Ticket #17727 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
5:22 AM Ticket #17726 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
5:18 AM Ticket #17725 (Crash using open/save dialog) created by chimerax-bug-report@…: […]
2:55 AM Ticket #17724 (Crash using open/save dialog?) created by bhargy.sharma@…: […]
2:20 AM Ticket #17723 (Crash in event loop) created by dengjc21@…: […]
12:41 AM Ticket #17722 (Linux: Could not find ffmpeg executable) created by r10b22039@…: […]

May 18, 2025:

9:02 PM Ticket #17721 (DICOM: Cancer Imaging Archive timeout) created by chimerax-bug-report@…: […]
6:25 PM Ticket #17720 (Crash in event loop) created by chimerax-bug-report@…: […]
11:21 AM Ticket #17719 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
9:43 AM Ticket #17718 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
6:57 AM Ticket #17717 (pyKVFinder: missing LC_LOAD_DYLIB (must link with at least libSystem.dylib)) created by openstomata@…: […]

May 17, 2025:

11:11 PM Ticket #17716 (Toolshed installation of SEQCROW: subprocess.run("pip ..."): The ...) created by chimerax-bug-report@…: […]
5:28 PM Ticket #17715 (Crash on Mac waking from sleep) created by chimerax-bug-report@…: […]
1:39 PM Ticket #17714 (Regular PDB file opened in MD Viewer) created by chimerax-bug-report@…: […]
8:39 AM Ticket #17713 (Crash in garbage collection) created by ellen_goodall@…: […]
7:03 AM Ticket #17712 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by surendramph@…: […]

May 16, 2025:

3:58 PM Ticket #17711 (Crash using open dialog) created by chimerax-bug-report@…: […]
3:30 PM Ticket #17710 (Crash opening AlphaFold prediction while others running) created by chimerax-bug-report@…: […]
1:56 PM ChangeLog edited by Elaine Meng: (diff)
12:10 PM Ticket #17709 (pip command documentation) created by Elaine Meng: The ChimeraX pip command has usage info but no manual page - I'm …
11:38 AM Ticket #17708 (Crash in event loop) created by chimerax-bug-report@…: […]
10:43 AM Ticket #17707 (Crash using open dialog) created by chimerax-bug-report@…: […]
9:15 AM Ticket #17706 (Crash using open dialog) created by chimerax-bug-report@…: […]
9:15 AM Ticket #17705 (Crash using open dialog) created by chimerax-bug-report@…: […]
8:20 AM Ticket #17704 (Linux ChimeraX can't find ffmpeg) created by Tristan Croll