Changes between Initial Version and Version 1 of 2016-09-01


Ignore:
Timestamp:
Sep 1, 2016, 2:50:10 PM (9 years ago)
Author:
Conrad Huang
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • 2016-09-01

    v1 v1  
     1= Attendees =
     2
     3  Elaine, Eric, Greg, Conrad, TomG, TomF
     4
     5= Agenda =
     6  * Review action items from last meeting
     7  * Chimera 1.11.1 release
     8  * ChimeraX issues
     9  * Meghan issues
     10  * Assign required site-visit functionality to people
     11  * Continuation of 8-29 discussion
     12
     13= Discussion =
     14  * Previous action items:
     15   * ChimeraX licensing
     16    * Click-through license for non-commercial ChimeraX is working
     17    * Embedded software list is included in distribution
     18  * Chimera 1.11.1 release
     19    * Candidate releases are up
     20      - Conrad is working on builds hanging on Windows
     21    * Need to implement fix for blastpdb before final 1.11.1
     22      - Fix by replacing Opal script with shell script that displays error message and exit with status 1
     23      - Waiting to see "final" format for pdbaa and nr FASTA files from NCBI
     24  * ChimeraX issues
     25   * Ribbon progress
     26    * Conrad implemented "peptide" keyword for "cartoon orient" option
     27    * Lots of stuff on Elaine's documentation page
     28    * Conrad is still working on curved (arc) strands
     29   * X3D export
     30    * Textures are not included
     31    * Triangle masks are honored
     32    * Instancing works for spheres and cylinders
     33    * Greg and TomG will investigate how "sym" command uses instancing
     34   * Investigate protein h-bonds/ss-bonds in mmCIF
     35   * Display DSSP h-bonds for comparison with other sources
     36  * Meghan Chimera (not ChimeraX) issues
     37    * We do not have resources to make ChimeraX usable for them by November
     38    * Chimera 1 struts now includes all h-bonds in pseudobond group as "normal" bonds in calculation
     39    * TomF will inform Meghan of our decision
     40  * Assign required site-visit functionality to people
     41    * Cytoscape and REST interface (Conrad, Scooter)
     42    * Side view on PyQt (Greg)
     43    * Toolshed (Conrad, Greg)
     44    * Ribbons (Conrad)
     45    * IHM cross-link distribution histograms (TomG)
     46    * Chain contact graph (TomG)
     47    * Domains
     48      * Web service, Uniprot? (Eric)
     49      * Integration into hierarchy (Eric)
     50      * Interactive 2D graph (team)
     51    * IHM mmCIF support (TBD)
     52    * -----
     53    * String database (Scooter, Conrad)
     54    * Hydrogen bonds and contacts (Eric)
     55    * MAV (Eric)
     56    * Link to NGL, LiteMol (Scooter, Conrad, Greg)
     57    * Molprobity on Opal (Scooter)
     58    * UI cleanup (team)
     59  * Continuation of 8-29 discussion
     60
     61= Outstanding Action Items =
     62  * Setting up ChimeraX distribution:
     63   1. ~~Conrad will implement click-through license
     64   1. ~~Greg will create embedded software page with links (only)
     65   1. Conrad will make http reference in About panel into hyperlink
     66  * Greg and TomG will investigate how "sym" command uses instancing