Changes between Initial Version and Version 1 of 2018-03-29


Ignore:
Timestamp:
Mar 29, 2018, 2:41:59 PM (8 years ago)
Author:
Conrad Huang
Comment:

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  • 2018-03-29

    v1 v1  
     1= Attendees =
     2
     3* Elaine, Eric, TomG, Conrad, TomF
     4
     5= Agenda =
     6* Cython and tinyarray
     7* mmCIF output
     8* Documentation and tutorial status
     9* Import hook
     10* Registration
     11* Release 0.6
     12 - Review [https://www.rbvi.ucsf.edu/trac/ChimeraX/query?status=feedback&status=reopened&status=assigned&status=new&status=accepted&group=status&milestone=0.6 milestone priorities]
     13*
     14* Wildcard/regex/case matching in commands
     15* What to show in log when opening model?  Citation? Title? ticket #1030
     16
     17= Discussion =
     18* Cython and tinyarray
     19  - Need to be careful when writing Cython code about returning to Python in the middle of a function.  Slows things down a lot unless everything is in C++.
     20  - findclash is 40% faster than Chimera 1.
     21  - Eventually need to move bonds, residues, etc. into Cython but is not urgent right now.
     22  - Remove requirement to inherit from Cython subclass in order for Python class to be "writable" (set attributes in instances)
     23* mmCIF output
     24  - Code is done and validates against RCSB validation tool
     25  - Output is still missing some tables, e.g., PDB file identifier, !EntityPoly (distinct from !EntityPolySeq)
     26  - No additions are needed since no other program cares about them
     27  - Greg is still working on technical document
     28* Documentation and tutorial status
     29  - Conrad is working on second of seven tutorials, making sure content is present and links work
     30  - Need to reference "true" path for classes instead of relying on import hook
     31* Registration
     32  - Need to update text and add text field for comment
     33  - Remove "Good through DATE" message
     34* Release 0.6
     35  - Review milestone priorities
     36  - Can release with tutorials for adding commands and tools are done
     37  - Can release without mmCIF output technical doc
     38  - Backed out Qt 5.10 (does not work on Linux)
     39  - Target releasing 0.6 next week
     40
     41= Action Items =
     42* Greg will write a technical document describing what is being output for mmCIF
     43* ~~Greg will feed ChimeraX mmCIF output into RCSB validator
     44* ~~Everyone update milestones that should be punted to 0.7
     45* Conrad will write bundle code tutorial
     46* Conrad will continue working on ribbon tickets