| | 16 | * Christmas card sent. |
| | 17 | |
| | 18 | * Java critical security log4j bug |
| | 19 | - Scooter dealing with Cytoscape and log4j 2 security vulnerability. |
| | 20 | - Our Apache servers don't use log4j. |
| | 21 | - TomCat uses log4j 1 which does not have plugin weakness. |
| | 22 | - Neo4j was vulnerable and Scooter patched it. |
| | 23 | - Chimera small molecule depiction service uses cdk library, does not have log4j. |
| | 24 | |
| | 25 | * Web services in ChimeraX using REST |
| | 26 | - Would like smiles to 2D depiction without CDK in ChimeraX. |
| | 27 | - Zach working on porting ChimeraX modeller to new web services (replacing opal). |
| | 28 | - Get all services working with ChimeraX, then look at backport to ChimeraX. |
| | 29 | - Everyone will have to run latest Chimera. |
| | 30 | - Zach is testing using webservicestest, then will move to production webservices. |
| | 31 | |
| | 32 | * Web services for Chimera |
| | 33 | - Chimera needs opal service to open mmcif and find ligand templates |
| | 34 | - Might just turn off Chimera services in a year |
| | 35 | |
| | 36 | * Web service status checking |
| | 37 | - Alphafold web services do status checking. |
| | 38 | - Have other ChimeraX web service check a status page on failure. |
| | 39 | - Get this into daily builds. |
| | 40 | - There is a 3 day wynton planned service in February. |
| | 41 | * Can have a static rbvi web site on cglbackup which will stay up during planned service (service is mostly for beegfs). |
| | 42 | |
| | 43 | * Security audit |
| | 44 | - We made many suggestions for corrections to audit report. |
| | 45 | - Who is taking responsibility to update audit report? |
| | 46 | - We can get draft audit report. |
| | 47 | - Scooter sent email to get a reply about requested changes. |
| | 48 | |
| | 49 | * Phenix R24 progress |
| | 50 | - Technical meeting was this morning, Eric, Zach, TomG attended |
| | 51 | - Added ChimeraX Phenix douse command (not yet in daily build), not using REST |
| | 52 | - Phenix nightly build is supposed to have Phenix REST server support tomorro |