Changes between Version 1 and Version 2 of 2026-4-16

Timestamp:

Apr 21, 2026, 10:32:52 AM (19 hours ago)

Author:

Tom Goddard

Comment:

--

2026-4-16

@@ -15 +15 @@
 = Discussion Notes =
 
+* Phenix barbed wire
+ - Demonstrated color-coded Alphafold 2 prediction categorizing residues.
+
+* Phenix find reference
+ - Demonstrated search of PDB using an input structure for structures Phenix can use to create refinement constraints.
+
+* Match-align
+ - Demonstrated 100x speedup of match-align computation of multiple sequence alignment from aligned structures.
+ - New implementation is in C++ while Chimera version was in Python.
+ - Still is limited to less than about 10 structures.
+
 
 = Action Items =