= User Functionality =

What initial areas of Chimera 2 functionality should we develop to allow users to do productive work more easily than with Chimera 1?

There is a [http://www.cgl.ucsf.edu/chimera/data/hydra-mar2014/hydra.html#ideas list of deas] in Hydra feature slides from March 2014.

Areas

 * Scenes
 * Presentation images
 * cellPACK / multiscale models
 * Multi-Domain Assembler (port?)
 * Comparitive structure analysis (clustering, morphing, showing differences)
 * Optical microscopy 3d time series
 * Cross-links and EM, Jan Kosinski EMBL, IMP, Rosetta
 * Docking results analysis, !ViewDock
 * Small ligand binding analysis (pocket surfaces, areas, hydrogen bonds, ...)
 * Evaluating 3A EM maps and atomic models
 * Map fitting
 * Map segmentation, Segger
 * Molecular dynamics