Changes between Version 116 and Version 117 of NTTData


Ignore:
Timestamp:
May 12, 2022, 2:02:38 PM (4 years ago)
Author:
Elaine Meng
Comment:

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  • NTTData

    v116 v117  
    678678Scooter: contract agreement is done!  Tom G is the unofficial lead on this NIAID funding, but he's on vacation now, so we don't have much to say yet.  Zach will be working on the DICOM stuff.  Status of NIH 3D?
    679679
    680 Phil: last I recall, still waiting on progress with the workflow server to handle new submission process and use of presets. Eric/Greg worked out toolshed issue, and the bundle is available there. Philip got called to another project and another developer is taking over the NIH 3D workflow programming. Kristin is now the development coordinator for NIH3D.
    681 
    682 Scooter: maybe that person can present at our next meeting?  Meghan & Phil agree, Meghan will make a note of that.
     680Phil: last I recall, still waiting on progress with the workflow server to handle new submission process and use of presets. Eric/Greg worked out toolshed issue, and the bundle is available there. Philip got called to another project and another developer (Mihal?) is taking over the NIH 3D workflow programming. Kristin is now the development coordinator for NIH3D.
     681
     682Scooter: maybe that person can present at our next meeting?  Meghan & Phil agree. Meghan will ask Mihal about doing this.
    683683
    684684Scooter: progress on !AlphaFold but we would also like to look into !RosettaFold calculations too. Phil: !RosettaFold is harder to use. It was also reasonable to start with !AlphaFold since EBI is providing a database of already-calculated models. Scooter: there was some talk of RCSB starting a !RosettaFold database.
     685
     686Scooter: Elaine's been presenting DICOM and DICOM viewers, and we have a couple of possible people to work with for real data & applications, Jason Rubenstein at Medical College of Wisconsin, and previously there was somebody else in South America.  Of course we still want to hear any requests or suggestions your group has for DICOM in VR, which would be top priority for this contract.
     687
     688Meghan: we've had a lot going on, not to mention the pandemic disruptions, so we need to revisit VR medical applications along with our collaborators in Uganda.  We're meeting with them in a couple of weeks. We're also working with other groups in VR medical applications (NHS in UK for health training) and come up with our next strategy and get back to you later.  I'm glad this is back on the radar!  We will also be getting more hardware.
     689
     690Scooter: we have a good wifi setup for untethered Quest headset now.  Required wrangling with UC IT to allow setting up our own wifi6 router (?) only for this limited purpose.  Campus wireless was unusable for this purpose.
     691
     692Phil: in ChimeraX, a big advantage is that we can go inside models in VR. Medical Holodeck doesn't really allow this, framerate goes way down.
     693Meghan: Medical Holodeck is just too heavyweight for convenient use in many situations.
     694
     695Phil: we like that the mapping of buttons to the cones shown in VR. However, the mapping is not good for some of the controllers where the buttons are in different places. So we would like Tom G to take a look at making different mappings that better match the different controllers. Elaine: I'll make a ticket and maybe Phil can add comments about which ones are mismatched.
     696
     697Phil, Meghan: Another recent problem with old (Chimera) pipeline may be related to EMDB metadata.  Eric: new (ChimeraX) pipeline gets recommended contour level; don't know what the old pipeline does. Phil: I think the problem is not in Chimera but in some other step.
     698
     699Scooter: 1.4 release is coming soon, release candidate is available.
     700
     701== 5/26/2022 ==
     702
     703Presentation by new NIH3D workflow developer, Mihal?