| 9 | | - '''open''' (suggest same general syntax as Chimera1, possibly adjusting prefixes) |
| 10 | | - '''repr''', '''ribrepr''', '''surfrepr''' (suggest consolidating into a new '''style''' command) |
| 11 | | - '''color''' (suggest consolidating with '''rainbow''') |
| 12 | | - '''display''' (suggest replacing with '''show/hide''' and eliminating current '''show''' command) |
| 13 | | - '''volume''' (redundancy with show/hide/color etc. OK with me) |
| 14 | | - '''set''' global settings: silhouettes, background color, shadows, lighting (if many sub-options, e.g. lighting, judiciously consider making a separate top-level command; also keeping a redundant but longer '''set''' command is OK with me) |
| 15 | | - '''setattr''' (general set-attributes functionality; ''extremely'' useful as permanent command even though parts will become redundant) |
| | 8 | * '''open''' (suggest same general syntax as Chimera1, possibly adjusting prefixes) |
| | 9 | * '''repr''', '''ribrepr''', '''surfrepr''' (suggest consolidating into a new '''style''' command, adding pseudobonds) |
| | 10 | * '''color''' (suggest including pseudobonds, consolidating with '''rainbow''', but leaving color-by-attr and color-by-field separate) |
| | 11 | * '''display''', '''ribbon''', '''surface''' (suggest replacing with '''show/hide (atoms|cartoon|surface)''') |
| | 12 | * '''volume''' (redundancy with show/hide/color etc. OK with me) |
| | 13 | * '''set''' global settings: silhouettes, background color, shadows, lighting (if many sub-options, e.g. lighting, judiciously consider making a separate top-level command; also keeping a redundant but longer '''set''' command is OK with me) |
| | 14 | |
| | 15 | Extremely useful catchalls, suggest retaining as permanent commands even though there will be some redundancy: |
| | 16 | * '''set''' global settings: |
| | 17 | * '''setattr''' (general set-attributes functionality) |
| | 18 | |
| | 19 | GUI-only, or do we need commands? |
| | 20 | * '''select''' (including up/down) |
| | 21 | * save/restore session |
| | 22 | * save image |