= ChimeraX Developer Wiki =

ChimeraX is a desktop application for molecular visualization and analysis, with an emphasis on molecular assemblies.

[http://www.rbvi.ucsf.edu/chimerax/ ChimeraX Home Page]

[wiki:ChangeLog Change log]

[https://github.com/RBVI/ChimeraX Source code at GitHub]

[https://rbvi.github.io/chimerax-recipes/ ChimeraX Recipes] - example command and Python scripts

== Documentation ==

- [http://www.rbvi.ucsf.edu/chimerax/docs/user User guide]
- [http://www.rbvi.ucsf.edu/chimerax/docs/quickstart Quick start]
- [http://www.rbvi.ucsf.edu/chimerax/docs/devel Programming manual]

== Usage ==

- Citations [https://www.rbvi.ucsf.edu/chimerax/stats.html graph ],  [https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=UCSF+ChimeraX%3A+Meeting+modern+challenges+in+visualization+and+analysis&btnG= 2017 paper] (828 to January 2021), [https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=UCSF+ChimeraX%3A+Structure+visualization+for+researchers%2C+educators%2C+and+developers&btnG= 2021 paper]
- [https://preview.rbvi.ucsf.edu/chimerax/cgi-bin/secure/registrationlist.py Registered users] (password protected, 1455 unique email addresses to Jan 2021)
- [https://www.rbvi.ucsf.edu/chimerax/stats.html Downloads graph] (53000  to January 2021,  [https://www.rbvi.ucsf.edu/chimerax/secure/downloadstats/ details])

== Builds ==

[http://www.rbvi.ucsf.edu/chimerax/download.html#daily Daily builds]
- [wiki:StartDaily How to restart the daily builds]
- [http://preview.rbvi.ucsf.edu/chimerax/builds/linux/daily.out Linux daily build log]
- [http://preview.rbvi.ucsf.edu/chimerax/builds/windows/daily.out Windows daily build log]
- [http://preview.rbvi.ucsf.edu/chimerax/builds/macosx/daily.out Mac daily build log]

[https://cxtoolshed.rbvi.ucsf.edu/apps/devel/release Release bundles on toolshed]

[https://www.rbvi.ucsf.edu/chimerax/docs/devel/conventions.html Getting ChimeraX source code]

[https://www.rbvi.ucsf.edu/trac/chimera/wiki/Chimera2/git Version Control using git]

[https://www.rbvi.ucsf.edu/chimerax/docs/devel/building.html#windows-build Windows Development Requirements]

[https://www.rbvi.ucsf.edu/chimerax/docs/devel/building.html#linux-build Linux Development Setup]

[wiki:linuxbundles Building Linux Bundles]

[wiki:nightlydocker Nightly Linux build using Docker] (historical)

[wiki:AddTracUser How to add a Trac user] (such as a new bundle developer)

== Miscellaneous ==

[wiki:Features Feature and Implementation discussions]

[wiki:benchmarking Benchmark results]

== Hardware ==

- [https://docs.google.com/document/d/1OmscI-IuQsrW4NV241Kb1TZnrWAm-fUIHjaxguIJklE vizvault VR instructions]
- [wiki:vizvault_stereo vizvault stereo instructions]
- [https://plato.cgl.ucsf.edu/trac/chimera/wiki/hardware Computer Hardware for Chimera / ChimeraX]