Changes between Initial Version and Version 1 of phenix-3-16-23


Ignore:
Timestamp:
Mar 15, 2023, 1:11:43 PM (3 years ago)
Author:
Eric Pettersen
Comment:

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  • phenix-3-16-23

    v1 v1  
     1**Phenix**
     2 * Decided on implementing Randy Read's fit-in-map tool.
     3 * Implemented command version
     4    * Executable name changed, so changed command name (phenix emplaceLocal) to correspond
     5    * Full-map arg now no longer required or accepted
     6      * Unclear how removing pre-fitted density will work
     7  * Implemented most of tool GUI
     8    * Needs place-marker mouse-mode control
     9
     10**ChimeraX completed**
     11 * NIAID: Don't do missing-structure calculations when adding atoms to residue during copy
     12 * Coordinate set playback tool speed control
     13 * swapna command
     14 * Ensure !MatchMaker orders /A-F as expected
     15 * NIAID: Dock Prep tool
     16 * Sequence RMSD computation was wrong due to mis-indentation
     17 * Compute coulombic volumes
     18 * Developed charges for 5' phosphorylated nucleic acids
     19 * NIAID: Have Mol2 reader add missing-structure pseudobonds and change residue names like ALAxy to just ALA
     20 * NIAID: SDF with just a '0' in charges section means missing charges
     21 * Sanity check PDB coordinates for NaN
     22 * NIAID: Add Charges tool
     23 * Support 8-character PDB IDs