Changes between Initial Version and Version 1 of phenix-9-27-23


Ignore:
Timestamp:
Sep 27, 2023, 11:53:08 AM (2 years ago)
Author:
Eric Pettersen
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • phenix-9-27-23

    v1 v1  
     1= Phenix =
     2=== Fit Loops Improvements ===
     3 * Use JSON output
     4 * Reworked command to use atom spec instead of chain ID and start/end residue numbers
     5   - Warn if spec selects nothing
     6 * Reported (additional) fit-loops bugs:
     7   - JSON option not working
     8   - JSON output includes null results
     9   - Chain ID w/o start/end res numbers does whole structure
     10   - Python IndexError into solution list
     11   - Phenix's Python 3.10 build basically doesn't work
     12     - Same problem as ChimeraX had: automatic type conversion to C/C++ disabled
     13 * Preliminary results-viewer tool
     14
     15= ChimeraX completed =
     16 * Updated programming tutorial to mention UI convenience classes
     17   * Data lists/menus (*e.g.* !StructureList)
     18   * Remember-able options (*e.g.* !FontOption)
     19   * Python-data tables
     20 * Allow specifying chain association along with !UniProt fetch
     21 * Can now invert selection just in models with selections (+ arrow key support)
     22 * IUPAC fetch
     23 * Context-menu entry to focus on residue in sequence viewer
     24 * Use !HyperKitty search of mailing-list archives instead of Google search
     25 * Make name column in Model Panel wider when names are long, and show tooltip for long names
     26 * Use C4' for sequence RMSD when appropriate
     27 * Allow setting all alt locs at once in Altloc Explorer
     28 * Suppressed asking for format when open .cif files
     29 * Improve variability of model colors past builtin set
     30 * Added looping control to playback slider