= Phenix = === Fit Loops Improvements === * Use JSON output * Reworked command to use atom spec instead of chain ID and start/end residue numbers - Warn if spec selects nothing * Reported (additional) fit-loops bugs: - JSON option not working - JSON output includes null results - Chain ID w/o start/end res numbers does whole structure - Python IndexError into solution list - Phenix's Python 3.10 build basically doesn't work - Same problem as ChimeraX had: automatic type conversion to C/C++ disabled * Preliminary results-viewer tool = ChimeraX completed = * Updated programming tutorial to mention UI convenience classes * Data lists/menus (*e.g.* !StructureList) * Remember-able options (*e.g.* !FontOption) * Python-data tables * Allow specifying chain association along with !UniProt fetch * Can now invert selection just in models with selections (+ arrow key support) * IUPAC fetch * Context-menu entry to focus on residue in sequence viewer * Use !HyperKitty search of mailing-list archives instead of Google search * Make name column in Model Panel wider when names are long, and show tooltip for long names * Use C4' for sequence RMSD when appropriate * Allow setting all alt locs at once in Altloc Explorer * Suppressed asking for format when open .cif files * Improve variability of model colors past builtin set * Added looping control to playback slider