Changes between Initial Version and Version 1 of Ticket #10007


Ignore:
Timestamp:
Oct 18, 2023, 11:53:37 AM (2 years ago)
Author:
Tom Goddard
Comment:

The session file you attached is very small, only 48946 bytes. Are you talking about the file increasing in size by small amounts (e.g. 1 kbyte?). The session contains the log of all the commands you used to produce the session from all previous saves that led to this session, so the file size should grow by small amounts each time you save because at least a few commands were added. I see also that you used the "contacts" command with "log true" which put hundreds of lines of output into the log. The log reported in this bug report is over 256 Kbytes -- the session file is smaller because it is compressed.

Probably if you use the command "log clear" and then save the session it will remove all those logged commands and make the file smaller. But usually it is worth keeping the log information since it documents how the session was created.

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #10007

    • Property Cc Tom Goddard added
    • Property Component Unassigned → Sessions
    • Property Owner set to Eric Pettersen
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Session files get larger on each save

  • Ticket #10007 – Description

    initial v1  
    100100Alignment identifier is 2 
    101101
    102 > select /AA:5-50/BA:14-47
    103 
    104 590 atoms, 603 bonds, 80 residues, 1 model selected 
    105 
    106 > select /AA:17-50/BA:14-47
    107 
    108 496 atoms, 506 bonds, 68 residues, 1 model selected 
    109 
    110 > select /AA:5-50/BA:14-47
    111 
    112 590 atoms, 603 bonds, 80 residues, 1 model selected 
    113 
    114 > select /AA:11-50/BA:14-47
    115 
    116 537 atoms, 548 bonds, 74 residues, 1 model selected 
    117 
    118 > select /AA:11-38/BA:14-47
    119 
    120 443 atoms, 449 bonds, 62 residues, 1 model selected 
    121 
    122 > select /AA:11-38/BA:14-41
    123 
    124 408 atoms, 414 bonds, 56 residues, 1 model selected 
    125 
    126 > select /AA:11-38/BA:14-47
    127 
    128 443 atoms, 449 bonds, 62 residues, 1 model selected 
    129 
    130 > select /AA:11-38/BA:20-47
    131 
    132 401 atoms, 407 bonds, 56 residues, 1 model selected 
    133 
    134 > save "/Users/drornoy/Desktop/LH2 helices/LH2 spaeroides 7pbw.cxs"
    135 
    136 > save "/Users/drornoy/Desktop/LH2 helices/LH2_Sphaeroides.pdb" relModel #1
    137 
    138 > open "/Users/drornoy/Desktop/LH2 helices/LH2_Sphaeroides.pdb"
    139 
    140 Summary of feedback from opening /Users/drornoy/Desktop/LH2
    141 helices/LH2_Sphaeroides.pdb 
    142 --- 
    143 warnings | Cannot find LINK/SSBOND residue CA (102 ) 
    144 Cannot find LINK/SSBOND residue CA (102 ) 
    145 Cannot find LINK/SSBOND residue CA (102 ) 
    146 Cannot find LINK/SSBOND residue CA (102 ) 
    147 Cannot find LINK/SSBOND residue CA (102 ) 
    148 31 messages similar to the above omitted 
    149  
    150 Chain information for LH2_Sphaeroides.pdb #2 
    151 --- 
    152 Chain | Description 
    153 AA AB AC AD AE AF AG AH AI | No description available 
    154 BA BB BC BD BE BF BG BH BI | No description available 
    155  
    156 
    157 > hide #!1 models
    158 
    159 > select #2/AA:11-38/BA:20-47
    160 
    161 401 atoms, 407 bonds, 56 residues, 1 model selected 
    162 
    163 > ui tool show "Change Chain IDs"
    164 
    165 > changechains sel BI R
    166 
    167 No residues specified have any of the 'from' chain IDs 
    168 
    169 > changechains BI R
    170 
    171 Chain IDs of 130 residues changed 
    172 
    173 > changechains BH Q
    174 
    175 Chain IDs of 128 residues changed 
    176 
    177 > changechains BG P
    178 
    179 Chain IDs of 130 residues changed 
    180 
    181 > changechains BF O
    182 
    183 Chain IDs of 124 residues changed 
    184 
    185 > changechains BE N
    186 
    187 Chain IDs of 128 residues changed 
    188 
    189 > changechains BD M
    190 
    191 Chain IDs of 126 residues changed 
    192 
    193 > changechains BC L
    194 
    195 Chain IDs of 132 residues changed 
    196 
    197 > changechains BB K
    198 
    199 Chain IDs of 132 residues changed 
    200 
    201 > changechains BA J
    202 
    203 Chain IDs of 124 residues changed 
    204 
    205 > changechains AA,AB,AC,AD,AE,AF,AG,AH,AI A,B,C,D,E,F,G,H,I
    206 
    207 Chain IDs of 1214 residues changed 
    208 
    209 > select #2/A:11-38/J:20-47
    210 
    211 401 atoms, 407 bonds, 56 residues, 1 model selected 
    212 
    213 > save "/Users/drornoy/Desktop/LH2 helices/LH2_Sphaeroides.pdb"
    214 
    215 > select protein
    216 
    217 13050 atoms, 13392 bonds, 1746 residues, 2 models selected 
    218 
    219 > hide sel & #!2 atoms
    220 
    221 > show sel & #!2 cartoons
    222 
    223 > select helix
    224 
    225 10620 atoms, 10854 bonds, 1440 residues, 2 models selected 
    226 
    227 > select clear
    228 
    229 > close session
    230 
    231 > open "/Users/drornoy/Desktop/LH2 helices/LH2_Sphaeroides.pdb" format pdb
    232 
    233 Chain information for LH2_Sphaeroides.pdb 
    234 --- 
    235 Chain | Description 
    236 1.1/A 1.2/A 1.1/B 1.2/B 1.1/C 1.2/C 1.1/D 1.2/D 1.1/E 1.2/E 1.1/F 1.2/F 1.1/G
    237 1.2/G 1.1/H 1.2/H 1.1/I 1.2/I | No description available 
    238 1.1/J 1.2/J 1.1/K 1.2/K 1.1/L 1.2/L 1.1/M 1.2/M 1.1/N 1.2/N 1.1/O 1.2/O 1.1/P
    239 1.2/P 1.1/Q 1.2/Q 1.1/R 1.2/R | No description available 
    240  
    241 
    242 > select protein
    243 
    244 13050 atoms, 13392 bonds, 1746 residues, 2 models selected 
    245 
    246 > style sel stick
    247 
    248 Changed 13050 atom styles 
    249 
    250 > hide sel atoms
    251 
    252 > show sel cartoons
    253 
    254 > select #2/A:11-38/J:20-47
    255 
    256 Nothing selected 
    257 
    258 > select /A:11-38/J:20-47
    259 
    260 802 atoms, 814 bonds, 112 residues, 2 models selected 
    261 
    262 > select /A-B:11-38/J-K:20-47
    263 
    264 1604 atoms, 1628 bonds, 224 residues, 2 models selected 
    265 
    266 > select /A-B:11-38,BCL/J-K:20-47,BCL
    267 
    268 2396 atoms, 2468 bonds, 48 pseudobonds, 236 residues, 4 models selected 
    269 
    270 > select ~/A-B:11-38,BCL/J-K:20-47,BCL
    271 
    272 16604 atoms, 16506 bonds, 246 pseudobonds, 2132 residues, 5 models selected 
    273 
    274 > hide sel cartoons
    275 
    276 > hide sel atoms
    277 
    278 > select /A-B:11-38,BCL/J-K:20-47,BCL and :HIS
    279 
    280 Expected a keyword 
    281 
    282 > select /A-B:11-38,BCL/J-K:20-47,BCL
    283 
    284 2396 atoms, 2468 bonds, 48 pseudobonds, 236 residues, 4 models selected 
    285 
    286 > select /A-B:11-38,BCL/J-K:20-47,BCL & :His
    287 
    288 120 atoms, 120 bonds, 12 residues, 2 models selected 
    289 
    290 > show sel atoms
    291 
    292 > select /B:BCL/J:BCL
    293 
    294 396 atoms, 420 bonds, 24 pseudobonds, 6 residues, 4 models selected 
    295 
    296 > select /B:BCL/J:BCL/A:102
    297 
    298 528 atoms, 560 bonds, 32 pseudobonds, 8 residues, 4 models selected 
    299 
    300 > hide sel atoms
    301 
    302 > open "/Users/drornoy/Desktop/LH2 helices/LH2 CCCP 4HB.pdb"
    303 
    304 Chain information for LH2 CCCP 4HB.pdb #2 
    305 --- 
    306 Chain | Description 
    307 A B J K | No description available 
    308  
    309 
    310 > view
    311 
    312 > help help:user
    313 
    314 > ribbon style /A-B:11-38/J-K:20-47 arrowsH t
    315 
    316 > hide #!1 models
    317 
    318 > open "/Users/drornoy/Desktop/LH2 helices/CCCP sim LH2 parallel 4HB.pdb"
    319 
    320 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP sim
    321 LH2 parallel 4HB.pdb 
    322 --- 
    323 warning | Ignored bad PDB record found on line 1 
    324 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    325 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    326 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 1, 1],
    327 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    328 [0.229, -1.861, 2.650] 
    329  
    330 Chain information for CCCP sim LH2 parallel 4HB.pdb #3 
    331 --- 
    332 Chain | Description 
    333 A B C D | No description available 
    334  
    335 
    336 > hide #3 models
    337 
    338 > show #3 models
    339 
    340 > hide #3 models
    341 
    342 > show #3 models
    343 
    344 > hide #3 models
    345 
    346 > show #3 models
    347 
    348 > hide #2 models
    349 
    350 > view
    351 
    352 > show #2 models
    353 
    354 > hide #2 models
    355 
    356 > show #2 models
    357 
    358 > hide #3 models
    359 
    360 > show #3 models
    361 
    362 > hide #3 models
    363 
    364 > show #3 models
    365 
    366 > view
    367 
    368 > select #2@CA
    369 
    370 112 atoms, 112 residues, 1 model selected 
    371 
    372 > select #3@CA
    373 
    374 112 atoms, 112 residues, 1 model selected 
    375 
    376 > align #3@CA toAtoms #2@CA
    377 
    378 RMSD between 112 atom pairs is 0.006 angstroms 
    379 
    380 > view
    381 
    382 > hide #2 models
    383 
    384 > show #!1 models
    385 
    386 > open "/Users/drornoy/Desktop/LH2 helices/CCCP sim LH2 antiparallel 4HB.pdb"
    387 
    388 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP sim
    389 LH2 antiparallel 4HB.pdb 
    390 --- 
    391 warning | Ignored bad PDB record found on line 1 
    392 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    393 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    394 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    395 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    396 [0.229, -1.861, 2.650] 
    397  
    398 Chain information for CCCP sim LH2 antiparallel 4HB.pdb #4 
    399 --- 
    400 Chain | Description 
    401 A B C D | No description available 
    402  
    403 
    404 > hide #!1 models
    405 
    406 > hide #3 models
    407 
    408 > show #3 models
    409 
    410 > view
    411 
    412 > view sel
    413 
    414 > align #4/A@CA/B@CA toAtoms #3/A@CA/B@CA
    415 
    416 RMSD between 56 atom pairs is 0.000 angstroms 
    417 
    418 > show #!1 models
    419 
    420 > hide #!1 models
    421 
    422 > ribbon style #2-4 arrowsH t
    423 
    424 > hide #3 models
    425 
    426 > show #3 models
    427 
    428 > open "/Users/drornoy/Desktop/LH2 helices/CCCP sim LH2 antiparallel 4HB
    429 > v2.pdb"
    430 
    431 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP sim
    432 LH2 antiparallel 4HB v2.pdb 
    433 --- 
    434 warning | Ignored bad PDB record found on line 1 
    435 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    436 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    437 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    438 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    439 [0.229, 1.861, 2.650] 
    440  
    441 Chain information for CCCP sim LH2 antiparallel 4HB v2.pdb #5 
    442 --- 
    443 Chain | Description 
    444 A B C D | No description available 
    445  
    446 
    447 > align #5/A@CA/B@CA toAtoms #3/A@CA/B@CA
    448 
    449 RMSD between 56 atom pairs is 0.000 angstroms 
    450 
    451 > select add #4
    452 
    453 672 atoms, 556 bonds, 224 residues, 2 models selected 
    454 
    455 > select add #3
    456 
    457 1120 atoms, 1112 bonds, 224 residues, 2 models selected 
    458 
    459 > select add #5
    460 
    461 1680 atoms, 1668 bonds, 336 residues, 3 models selected 
    462 
    463 > hide sel cartoons
    464 
    465 > show sel atoms
    466 
    467 > select #3-5@CA
    468 
    469 336 atoms, 336 residues, 3 models selected 
    470 
    471 > style sel ball
    472 
    473 Changed 336 atom styles 
    474 
    475 > hide #3 models
    476 
    477 > show #3 models
    478 
    479 > hide #5 models
    480 
    481 > select #3/C:28@CA
    482 
    483 1 atom, 1 residue, 1 model selected 
    484 
    485 > select #3/C:28@CA#5/C:1@CA
    486 
    487 2 atoms, 2 residues, 2 models selected 
    488 
    489 > select #3/C:28@CA#4/C:1@CA
    490 
    491 2 atoms, 2 residues, 2 models selected 
    492 
    493 > ui tool show Distances
    494 
    495 > distance #3/C:28@CA #4/C:1@CA
    496 
    497 Distance between CCCP sim LH2 parallel 4HB.pdb #3/C GLY 28 CA and CCCP sim LH2
    498 antiparallel 4HB.pdb #4/C GLY 1 CA: 4.343Å 
    499 
    500 > select #3/D:28@CA#4/D:1@CA
    501 
    502 2 atoms, 2 residues, 2 models selected 
    503 
    504 > distance #3/D:28@CA #4/D:1@CA
    505 
    506 Distance between CCCP sim LH2 parallel 4HB.pdb #3/D GLY 28 CA and CCCP sim LH2
    507 antiparallel 4HB.pdb #4/D GLY 1 CA: 4.491Å 
    508 
    509 > show #5 models
    510 
    511 > select #3/C:28@CA#5/C:1@CA
    512 
    513 2 atoms, 2 residues, 2 models selected 
    514 
    515 > distance #3/C:28@CA #5/C:1@CA
    516 
    517 Distance between CCCP sim LH2 parallel 4HB.pdb #3/C GLY 28 CA and CCCP sim LH2
    518 antiparallel 4HB v2.pdb #5/C GLY 1 CA: 0.834Å 
    519 
    520 > hide #4 models
    521 
    522 > hide #5 models
    523 
    524 > open /Users/drornoy/Downloads/00005.88f5539457fa.allbb.pdb
    525 > /Users/drornoy/Downloads/00004.88f5539457fa.allbb.pdb
    526 > /Users/drornoy/Downloads/00003.88f5539457fa.allbb.pdb
    527 > /Users/drornoy/Downloads/00002.88f5539457fa.allbb.pdb
    528 > /Users/drornoy/Downloads/00001.88f5539457fa.allbb.pdb
    529 
    530 Summary of feedback from opening
    531 /Users/drornoy/Downloads/00005.88f5539457fa.allbb.pdb 
    532 --- 
    533 warning | Ignored bad PDB record found on line 1 
    534 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    535 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    536 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    537 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    538 [0.229, 2.300, 2.650] 
    539  
    540 Summary of feedback from opening
    541 /Users/drornoy/Downloads/00004.88f5539457fa.allbb.pdb 
    542 --- 
    543 warning | Ignored bad PDB record found on line 1 
    544 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    545 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    546 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    547 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    548 [0.229, 2.200, 2.650] 
    549  
    550 Summary of feedback from opening
    551 /Users/drornoy/Downloads/00003.88f5539457fa.allbb.pdb 
    552 --- 
    553 warning | Ignored bad PDB record found on line 1 
    554 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    555 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    556 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    557 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    558 [0.229, 2.100, 2.650] 
    559  
    560 Summary of feedback from opening
    561 /Users/drornoy/Downloads/00002.88f5539457fa.allbb.pdb 
    562 --- 
    563 warning | Ignored bad PDB record found on line 1 
    564 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    565 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    566 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    567 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    568 [0.229, 2, 2.650] 
    569  
    570 Summary of feedback from opening
    571 /Users/drornoy/Downloads/00001.88f5539457fa.allbb.pdb 
    572 --- 
    573 warning | Ignored bad PDB record found on line 1 
    574 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    575 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    576 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    577 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    578 [0.229, 1.900, 2.650] 
    579  
    580 Chain information for 00005.88f5539457fa.allbb.pdb #7 
    581 --- 
    582 Chain | Description 
    583 A B C D | No description available 
    584  
    585 Chain information for 00004.88f5539457fa.allbb.pdb #8 
    586 --- 
    587 Chain | Description 
    588 A B C D | No description available 
    589  
    590 Chain information for 00003.88f5539457fa.allbb.pdb #9 
    591 --- 
    592 Chain | Description 
    593 A B C D | No description available 
    594  
    595 Chain information for 00002.88f5539457fa.allbb.pdb #10 
    596 --- 
    597 Chain | Description 
    598 A B C D | No description available 
    599  
    600 Chain information for 00001.88f5539457fa.allbb.pdb #11 
    601 --- 
    602 Chain | Description 
    603 A B C D | No description available 
    604  
    605 
    606 > align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA
    607 
    608 RMSD between 56 atom pairs is 0.000 angstroms 
    609 
    610 > align #8/A@CA/B@CA toAtoms #3/A@CA/B@CA
    611 
    612 RMSD between 56 atom pairs is 0.000 angstroms 
    613 
    614 > align #9/A@CA/B@CA toAtoms #3/A@CA/B@CA
    615 
    616 RMSD between 56 atom pairs is 0.000 angstroms 
    617 
    618 > align #10/A@CA/B@CA toAtoms #3/A@CA/B@CA
    619 
    620 RMSD between 56 atom pairs is 0.000 angstroms 
    621 
    622 > align #11/A@CA/B@CA toAtoms #3/A@CA/B@CA
    623 
    624 RMSD between 56 atom pairs is 0.000 angstroms 
    625 
    626 > select #6-10@CA
    627 
    628 448 atoms, 448 residues, 4 models selected 
    629 
    630 > select #6-10
    631 
    632 2240 atoms, 2224 bonds, 3 pseudobonds, 448 residues, 6 models selected 
    633 
    634 > hide sel cartoons
    635 
    636 > select #6-11
    637 
    638 2800 atoms, 2780 bonds, 3 pseudobonds, 560 residues, 7 models selected 
    639 
    640 > hide sel cartoons
    641 
    642 > show sel atoms
    643 
    644 > select #6-11@CA
    645 
    646 560 atoms, 560 residues, 5 models selected 
    647 
    648 > style sel ball
    649 
    650 Changed 560 atom styles 
    651 
    652 > show #4 models
    653 
    654 > hide #4 models
    655 
    656 > show #5 models
    657 
    658 > select #3/C:28@CA#11/C:1@CA
    659 
    660 2 atoms, 2 residues, 2 models selected 
    661 
    662 > distance #3/C:28@CA #11/C:1@CA
    663 
    664 Distance between CCCP sim LH2 parallel 4HB.pdb #3/C GLY 28 CA and
    665 00001.88f5539457fa.allbb.pdb #11/C GLY 1 CA: 0.808Å 
    666 
    667 > select #3/C:28@CA#7/C:1@CA
    668 
    669 2 atoms, 2 residues, 2 models selected 
    670 
    671 > distance #3/C:28@CA #7/C:1@CA
    672 
    673 Distance between CCCP sim LH2 parallel 4HB.pdb #3/C GLY 28 CA and
    674 00005.88f5539457fa.allbb.pdb #7/C GLY 1 CA: 0.621Å 
    675 
    676 > hide #8 models
    677 
    678 > hide #9 models
    679 
    680 > show #9 models
    681 
    682 > show #8 models
    683 
    684 > close #8-11
    685 
    686 > ~distance #3/C:28@CA #7/C:1@CA
    687 
    688 > ~distance #3/C:28@CA #5/C:1@CA
    689 
    690 > close #7
    691 
    692 > open /Users/drornoy/Downloads/00001.301a649c1bd2.allbb.pdb
    693 > /Users/drornoy/Downloads/00005.301a649c1bd2.allbb.pdb
    694 > /Users/drornoy/Downloads/00004.301a649c1bd2.allbb.pdb
    695 > /Users/drornoy/Downloads/00003.301a649c1bd2.allbb.pdb
    696 > /Users/drornoy/Downloads/00002.301a649c1bd2.allbb.pdb
    697 
    698 Summary of feedback from opening
    699 /Users/drornoy/Downloads/00001.301a649c1bd2.allbb.pdb 
    700 --- 
    701 warning | Ignored bad PDB record found on line 1 
    702 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    703 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    704 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    705 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    706 [0.229, 2.400, 2.700] 
    707  
    708 Summary of feedback from opening
    709 /Users/drornoy/Downloads/00005.301a649c1bd2.allbb.pdb 
    710 --- 
    711 warning | Ignored bad PDB record found on line 1 
    712 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    713 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    714 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    715 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    716 [0.229, 2.400, 3.700] 
    717  
    718 Summary of feedback from opening
    719 /Users/drornoy/Downloads/00004.301a649c1bd2.allbb.pdb 
    720 --- 
    721 warning | Ignored bad PDB record found on line 1 
    722 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    723 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    724 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    725 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    726 [0.229, 2.400, 3.450] 
    727  
    728 Summary of feedback from opening
    729 /Users/drornoy/Downloads/00003.301a649c1bd2.allbb.pdb 
    730 --- 
    731 warning | Ignored bad PDB record found on line 1 
    732 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    733 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    734 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    735 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    736 [0.229, 2.400, 3.200] 
    737  
    738 Summary of feedback from opening
    739 /Users/drornoy/Downloads/00002.301a649c1bd2.allbb.pdb 
    740 --- 
    741 warning | Ignored bad PDB record found on line 1 
    742 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    743 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    744 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    745 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    746 [0.229, 2.400, 2.950] 
    747  
    748 Chain information for 00001.301a649c1bd2.allbb.pdb #7 
    749 --- 
    750 Chain | Description 
    751 A B C D | No description available 
    752  
    753 Chain information for 00005.301a649c1bd2.allbb.pdb #8 
    754 --- 
    755 Chain | Description 
    756 A B C D | No description available 
    757  
    758 Chain information for 00004.301a649c1bd2.allbb.pdb #9 
    759 --- 
    760 Chain | Description 
    761 A B C D | No description available 
    762  
    763 Chain information for 00003.301a649c1bd2.allbb.pdb #10 
    764 --- 
    765 Chain | Description 
    766 A B C D | No description available 
    767  
    768 Chain information for 00002.301a649c1bd2.allbb.pdb #11 
    769 --- 
    770 Chain | Description 
    771 A B C D | No description available 
    772  
    773 
    774 > align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA
    775 
    776 RMSD between 56 atom pairs is 0.000 angstroms 
    777 
    778 > align #8/A@CA/B@CA toAtoms #3/A@CA/B@CA
    779 
    780 RMSD between 56 atom pairs is 0.000 angstroms 
    781 
    782 > align #9/A@CA/B@CA toAtoms #3/A@CA/B@CA
    783 
    784 RMSD between 56 atom pairs is 0.000 angstroms 
    785 
    786 > align #10/A@CA/B@CA toAtoms #3/A@CA/B@CA
    787 
    788 RMSD between 56 atom pairs is 0.000 angstroms 
    789 
    790 > align #11/A@CA/B@CA toAtoms #3/A@CA/B@CA
    791 
    792 RMSD between 56 atom pairs is 0.000 angstroms 
    793 
    794 > select #6-11
    795 
    796 2800 atoms, 2780 bonds, 2 pseudobonds, 560 residues, 7 models selected 
    797 
    798 > hide sel cartoons
    799 
    800 > hide sel atoms
    801 
    802 > show sel atoms
    803 
    804 > select #6-11@CA
    805 
    806 560 atoms, 560 residues, 5 models selected 
    807 
    808 > style sel ball
    809 
    810 Changed 560 atom styles 
    811 
    812 > close #7-11
    813 
    814 > open /Users/drornoy/Downloads/00005.301a649c1bd2.allbb.pdb
    815 
    816 Summary of feedback from opening
    817 /Users/drornoy/Downloads/00005.301a649c1bd2.allbb.pdb 
    818 --- 
    819 warning | Ignored bad PDB record found on line 1 
    820 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    821 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    822 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    823 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    824 [0.229, 2.400, 3.700] 
    825  
    826 Chain information for 00005.301a649c1bd2.allbb.pdb #7 
    827 --- 
    828 Chain | Description 
    829 A B C D | No description available 
    830  
    831 
    832 > align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA
    833 
    834 RMSD between 56 atom pairs is 0.000 angstroms 
    835 
    836 > select #6-11@CA
    837 
    838 112 atoms, 112 residues, 1 model selected 
    839 
    840 > style sel ball
    841 
    842 Changed 112 atom styles 
    843 
    844 > hide sel cartoons
    845 
    846 > show sel atoms
    847 
    848 > select #3-5 &~@CA
    849 
    850 1344 atoms, 996 bonds, 336 residues, 3 models selected 
    851 
    852 > hide sel & #3,5 atoms
    853 
    854 > show #4 models
    855 
    856 > hide #4 models
    857 
    858 > hide #!7 models
    859 
    860 > show #2 models
    861 
    862 > select #2-4 &~@CA
    863 
    864 1344 atoms, 996 bonds, 336 residues, 3 models selected 
    865 
    866 > hide sel & #2#!3 cartoons
    867 
    868 > hide sel & #2#!3 atoms
    869 
    870 > select #2-4 &@CA
    871 
    872 336 atoms, 110 pseudobonds, 336 residues, 5 models selected 
    873 
    874 > show sel & #2#!3 atoms
    875 
    876 > hide #!3 models
    877 
    878 > show #!3 models
    879 
    880 > style sel & #!2-3 ball
    881 
    882 Changed 224 atom styles 
    883 
    884 > hide #!5 models
    885 
    886 > hide #!6 models
    887 
    888 > hide #!3 models
    889 
    890 > hide #!2 models
    891 
    892 > show #!3 models
    893 
    894 > show #4 models
    895 
    896 > hide #4 models
    897 
    898 > show #!5 models
    899 
    900 > hide #!5 models
    901 
    902 > show #4 models
    903 
    904 > select 4 &~@CA
    905 
    906 Expected an objects specifier or a keyword 
    907 
    908 > hide sel & #4#!3 atoms
    909 
    910 > show sel & #3-4 atoms
    911 
    912 > select #4-7 &~@CA
    913 
    914 1344 atoms, 996 bonds, 336 residues, 4 models selected 
    915 
    916 > hide sel & #4 atoms
    917 
    918 > show #!5 models
    919 
    920 > hide #!4 models
    921 
    922 > hide #!3 models
    923 
    924 > show #!7 models
    925 
    926 > hide #!5 models
    927 
    928 > show #!3 models
    929 
    930 > close #7
    931 
    932 > open /Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.allbb.pdb
    933 > /Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.allbb.pdb
    934 > /Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.CA.pdb
    935 > /Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.allbb.pdb
    936 > /Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.CA.pdb
    937 > /Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.allbb.pdb
    938 > /Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.CA.pdb
    939 > /Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.allbb.pdb
    940 > /Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.CA.pdb
    941 > /Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.allbb.pdb
    942 > /Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.CA.pdb
    943 > /Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.allbb.pdb
    944 > /Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.CA.pdb
    945 > /Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.allbb.pdb
    946 > /Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.CA.pdb
    947 > /Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.allbb.pdb
    948 > /Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.CA.pdb
    949 > /Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.CA.pdb
    950 
    951 Summary of feedback from opening
    952 /Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.allbb.pdb 
    953 --- 
    954 warning | Ignored bad PDB record found on line 1 
    955 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    956 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    957 &phi;<SUB>1</SUB> = [15.855, 119, 116, 12.190], ori = [1, 0, 0],
    958 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    959 [0.229, 2.400, 5.300] 
    960  
    961 Summary of feedback from opening
    962 /Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.allbb.pdb 
    963 --- 
    964 warning | Ignored bad PDB record found on line 1 
    965 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    966 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    967 &phi;<SUB>1</SUB> = [15.855, 117, 114, 12.190], ori = [1, 0, 0],
    968 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    969 [0.229, 2.400, 5.300] 
    970  
    971 Summary of feedback from opening
    972 /Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.CA.pdb 
    973 --- 
    974 warning | Ignored bad PDB record found on line 1 
    975 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    976 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    977 &phi;<SUB>1</SUB> = [15.855, 117, 114, 12.190], ori = [1, 0, 0],
    978 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    979 [0.229, 2.400, 5.300] 
    980  
    981 Summary of feedback from opening
    982 /Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.allbb.pdb 
    983 --- 
    984 warning | Ignored bad PDB record found on line 1 
    985 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    986 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    987 &phi;<SUB>1</SUB> = [15.855, 117.250, 114.250, 12.190], ori = [1, 0, 0],
    988 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    989 [0.229, 2.400, 5.300] 
    990  
    991 Summary of feedback from opening
    992 /Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.CA.pdb 
    993 --- 
    994 warning | Ignored bad PDB record found on line 1 
    995 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    996 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    997 &phi;<SUB>1</SUB> = [15.855, 117.250, 114.250, 12.190], ori = [1, 0, 0],
    998 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    999 [0.229, 2.400, 5.300] 
    1000  
    1001 Summary of feedback from opening
    1002 /Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.allbb.pdb 
    1003 --- 
    1004 warning | Ignored bad PDB record found on line 1 
    1005 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1006 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1007 &phi;<SUB>1</SUB> = [15.855, 117.500, 114.500, 12.190], ori = [1, 0, 0],
    1008 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1009 [0.229, 2.400, 5.300] 
    1010  
    1011 Summary of feedback from opening
    1012 /Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.CA.pdb 
    1013 --- 
    1014 warning | Ignored bad PDB record found on line 1 
    1015 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1016 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1017 &phi;<SUB>1</SUB> = [15.855, 117.500, 114.500, 12.190], ori = [1, 0, 0],
    1018 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1019 [0.229, 2.400, 5.300] 
    1020  
    1021 Summary of feedback from opening
    1022 /Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.allbb.pdb 
    1023 --- 
    1024 warning | Ignored bad PDB record found on line 1 
    1025 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1026 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1027 &phi;<SUB>1</SUB> = [15.855, 117.750, 114.750, 12.190], ori = [1, 0, 0],
    1028 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1029 [0.229, 2.400, 5.300] 
    1030  
    1031 Summary of feedback from opening
    1032 /Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.CA.pdb 
    1033 --- 
    1034 warning | Ignored bad PDB record found on line 1 
    1035 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1036 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1037 &phi;<SUB>1</SUB> = [15.855, 117.750, 114.750, 12.190], ori = [1, 0, 0],
    1038 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1039 [0.229, 2.400, 5.300] 
    1040  
    1041 Summary of feedback from opening
    1042 /Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.allbb.pdb 
    1043 --- 
    1044 warning | Ignored bad PDB record found on line 1 
    1045 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1046 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1047 &phi;<SUB>1</SUB> = [15.855, 118, 115, 12.190], ori = [1, 0, 0],
    1048 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1049 [0.229, 2.400, 5.300] 
    1050  
    1051 Summary of feedback from opening
    1052 /Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.CA.pdb 
    1053 --- 
    1054 warning | Ignored bad PDB record found on line 1 
    1055 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1056 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1057 &phi;<SUB>1</SUB> = [15.855, 118, 115, 12.190], ori = [1, 0, 0],
    1058 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1059 [0.229, 2.400, 5.300] 
    1060  
    1061 Summary of feedback from opening
    1062 /Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.allbb.pdb 
    1063 --- 
    1064 warning | Ignored bad PDB record found on line 1 
    1065 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1066 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1067 &phi;<SUB>1</SUB> = [15.855, 118.250, 115.250, 12.190], ori = [1, 0, 0],
    1068 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1069 [0.229, 2.400, 5.300] 
    1070  
    1071 Summary of feedback from opening
    1072 /Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.CA.pdb 
    1073 --- 
    1074 warning | Ignored bad PDB record found on line 1 
    1075 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1076 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1077 &phi;<SUB>1</SUB> = [15.855, 118.250, 115.250, 12.190], ori = [1, 0, 0],
    1078 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1079 [0.229, 2.400, 5.300] 
    1080  
    1081 Summary of feedback from opening
    1082 /Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.allbb.pdb 
    1083 --- 
    1084 warning | Ignored bad PDB record found on line 1 
    1085 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1086 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1087 &phi;<SUB>1</SUB> = [15.855, 118.500, 115.500, 12.190], ori = [1, 0, 0],
    1088 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1089 [0.229, 2.400, 5.300] 
    1090  
    1091 Summary of feedback from opening
    1092 /Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.CA.pdb 
    1093 --- 
    1094 warning | Ignored bad PDB record found on line 1 
    1095 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1096 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1097 &phi;<SUB>1</SUB> = [15.855, 118.500, 115.500, 12.190], ori = [1, 0, 0],
    1098 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1099 [0.229, 2.400, 5.300] 
    1100  
    1101 Summary of feedback from opening
    1102 /Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.allbb.pdb 
    1103 --- 
    1104 warning | Ignored bad PDB record found on line 1 
    1105 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1106 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1107 &phi;<SUB>1</SUB> = [15.855, 118.750, 115.750, 12.190], ori = [1, 0, 0],
    1108 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1109 [0.229, 2.400, 5.300] 
    1110  
    1111 Summary of feedback from opening
    1112 /Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.CA.pdb 
    1113 --- 
    1114 warning | Ignored bad PDB record found on line 1 
    1115 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1116 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1117 &phi;<SUB>1</SUB> = [15.855, 118.750, 115.750, 12.190], ori = [1, 0, 0],
    1118 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1119 [0.229, 2.400, 5.300] 
    1120  
    1121 Summary of feedback from opening
    1122 /Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.CA.pdb 
    1123 --- 
    1124 warning | Ignored bad PDB record found on line 1 
    1125 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1126 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1127 &phi;<SUB>1</SUB> = [15.855, 119, 116, 12.190], ori = [1, 0, 0],
    1128 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1129 [0.229, 2.400, 5.300] 
    1130  
    1131 Chain information for 00009.5b7b5aed8b04.allbb.pdb #7 
    1132 --- 
    1133 Chain | Description 
    1134 A B C D | No description available 
    1135  
    1136 Chain information for 00001.5b7b5aed8b04.allbb.pdb #8 
    1137 --- 
    1138 Chain | Description 
    1139 A B C D | No description available 
    1140  
    1141 Chain information for 00001.5b7b5aed8b04.CA.pdb #9 
    1142 --- 
    1143 Chain | Description 
    1144 A B C D | No description available 
    1145  
    1146 Chain information for 00002.5b7b5aed8b04.allbb.pdb #10 
    1147 --- 
    1148 Chain | Description 
    1149 A B C D | No description available 
    1150  
    1151 Chain information for 00002.5b7b5aed8b04.CA.pdb #11 
    1152 --- 
    1153 Chain | Description 
    1154 A B C D | No description available 
    1155  
    1156 Chain information for 00003.5b7b5aed8b04.allbb.pdb #12 
    1157 --- 
    1158 Chain | Description 
    1159 A B C D | No description available 
    1160  
    1161 Chain information for 00003.5b7b5aed8b04.CA.pdb #13 
    1162 --- 
    1163 Chain | Description 
    1164 A B C D | No description available 
    1165  
    1166 Chain information for 00004.5b7b5aed8b04.allbb.pdb #14 
    1167 --- 
    1168 Chain | Description 
    1169 A B C D | No description available 
    1170  
    1171 Chain information for 00004.5b7b5aed8b04.CA.pdb #15 
    1172 --- 
    1173 Chain | Description 
    1174 A B C D | No description available 
    1175  
    1176 Chain information for 00005.5b7b5aed8b04.allbb.pdb #16 
    1177 --- 
    1178 Chain | Description 
    1179 A B C D | No description available 
    1180  
    1181 Chain information for 00005.5b7b5aed8b04.CA.pdb #17 
    1182 --- 
    1183 Chain | Description 
    1184 A B C D | No description available 
    1185  
    1186 Chain information for 00006.5b7b5aed8b04.allbb.pdb #18 
    1187 --- 
    1188 Chain | Description 
    1189 A B C D | No description available 
    1190  
    1191 Chain information for 00006.5b7b5aed8b04.CA.pdb #19 
    1192 --- 
    1193 Chain | Description 
    1194 A B C D | No description available 
    1195  
    1196 Chain information for 00007.5b7b5aed8b04.allbb.pdb #20 
    1197 --- 
    1198 Chain | Description 
    1199 A B C D | No description available 
    1200  
    1201 Chain information for 00007.5b7b5aed8b04.CA.pdb #21 
    1202 --- 
    1203 Chain | Description 
    1204 A B C D | No description available 
    1205  
    1206 Chain information for 00008.5b7b5aed8b04.allbb.pdb #22 
    1207 --- 
    1208 Chain | Description 
    1209 A B C D | No description available 
    1210  
    1211 Chain information for 00008.5b7b5aed8b04.CA.pdb #23 
    1212 --- 
    1213 Chain | Description 
    1214 A B C D | No description available 
    1215  
    1216 Chain information for 00009.5b7b5aed8b04.CA.pdb #24 
    1217 --- 
    1218 Chain | Description 
    1219 A B C D | No description available 
    1220  
    1221 
    1222 > select #7-24@CA
    1223 
    1224 2016 atoms, 972 pseudobonds, 2016 residues, 27 models selected 
    1225 
    1226 > help help:user
    1227 
    1228 > select #7-24
    1229 
    1230 6048 atoms, 5004 bonds, 972 pseudobonds, 2016 residues, 27 models selected 
    1231 
    1232 > hide sel cartoons
    1233 
    1234 > hide sel atoms
    1235 
    1236 > select #7-24@CA
    1237 
    1238 2016 atoms, 972 pseudobonds, 2016 residues, 27 models selected 
    1239 
    1240 > style sel ball
    1241 
    1242 Changed 2016 atom styles 
    1243 
    1244 > show sel atoms
    1245 
    1246 > align #7-24/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    1247 
    1248 RMSD between 56 atom pairs is 0.010 angstroms 
    1249 RMSD between 56 atom pairs is 0.045 angstroms 
    1250 [Repeated 1 time(s)]RMSD between 56 atom pairs is 0.038 angstroms 
    1251 [Repeated 1 time(s)]RMSD between 56 atom pairs is 0.031 angstroms 
    1252 [Repeated 1 time(s)]RMSD between 56 atom pairs is 0.024 angstroms 
    1253 [Repeated 1 time(s)]RMSD between 56 atom pairs is 0.018 angstroms 
    1254 [Repeated 1 time(s)]RMSD between 56 atom pairs is 0.011 angstroms 
    1255 [Repeated 1 time(s)]RMSD between 56 atom pairs is 0.004 angstroms 
    1256 [Repeated 1 time(s)]RMSD between 56 atom pairs is 0.003 angstroms 
    1257 [Repeated 1 time(s)]RMSD between 56 atom pairs is 0.010 angstroms 
    1258 
    1259 > hide #!7 models
    1260 
    1261 > hide #!8 models
    1262 
    1263 > hide #!9 models
    1264 
    1265 > hide #!10 models
    1266 
    1267 > hide #!11 models
    1268 
    1269 > hide #!12 models
    1270 
    1271 > hide #!13 models
    1272 
    1273 > hide #!14 models
    1274 
    1275 > hide #!15 models
    1276 
    1277 > hide #!16 models
    1278 
    1279 > hide #!17 models
    1280 
    1281 > hide #!18 models
    1282 
    1283 > hide #!19 models
    1284 
    1285 > hide #!20 models
    1286 
    1287 > hide #!21 models
    1288 
    1289 > hide #!22 models
    1290 
    1291 > hide #!23 models
    1292 
    1293 > hide #!24 models
    1294 
    1295 > show #!7 models
    1296 
    1297 > hide #!7 models
    1298 
    1299 > show #!8 models
    1300 
    1301 > hide #!8 models
    1302 
    1303 > show #!10 models
    1304 
    1305 > hide #!10 models
    1306 
    1307 > show #!24 models
    1308 
    1309 > show #!23 models
    1310 
    1311 > hide #!23 models
    1312 
    1313 > hide #!24 models
    1314 
    1315 > close #7-24
    1316 
    1317 > open /Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.allbb.pdb
    1318 > /Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.allbb.pdb
    1319 > /Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.allbb.pdb
    1320 > /Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.allbb.pdb
    1321 > /Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.allbb.pdb
    1322 > /Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.allbb.pdb
    1323 > /Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.allbb.pdb
    1324 > /Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.allbb.pdb
    1325 > /Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.allbb.pdb
    1326 
    1327 Summary of feedback from opening
    1328 /Users/drornoy/Downloads/5b7b5aed8b04/00009.5b7b5aed8b04.allbb.pdb 
    1329 --- 
    1330 warning | Ignored bad PDB record found on line 1 
    1331 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1332 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1333 &phi;<SUB>1</SUB> = [15.855, 119, 116, 12.190], ori = [1, 0, 0],
    1334 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1335 [0.229, 2.400, 5.300] 
    1336  
    1337 Summary of feedback from opening
    1338 /Users/drornoy/Downloads/5b7b5aed8b04/00001.5b7b5aed8b04.allbb.pdb 
    1339 --- 
    1340 warning | Ignored bad PDB record found on line 1 
    1341 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1342 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1343 &phi;<SUB>1</SUB> = [15.855, 117, 114, 12.190], ori = [1, 0, 0],
    1344 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1345 [0.229, 2.400, 5.300] 
    1346  
    1347 Summary of feedback from opening
    1348 /Users/drornoy/Downloads/5b7b5aed8b04/00002.5b7b5aed8b04.allbb.pdb 
    1349 --- 
    1350 warning | Ignored bad PDB record found on line 1 
    1351 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1352 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1353 &phi;<SUB>1</SUB> = [15.855, 117.250, 114.250, 12.190], ori = [1, 0, 0],
    1354 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1355 [0.229, 2.400, 5.300] 
    1356  
    1357 Summary of feedback from opening
    1358 /Users/drornoy/Downloads/5b7b5aed8b04/00003.5b7b5aed8b04.allbb.pdb 
    1359 --- 
    1360 warning | Ignored bad PDB record found on line 1 
    1361 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1362 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1363 &phi;<SUB>1</SUB> = [15.855, 117.500, 114.500, 12.190], ori = [1, 0, 0],
    1364 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1365 [0.229, 2.400, 5.300] 
    1366  
    1367 Summary of feedback from opening
    1368 /Users/drornoy/Downloads/5b7b5aed8b04/00004.5b7b5aed8b04.allbb.pdb 
    1369 --- 
    1370 warning | Ignored bad PDB record found on line 1 
    1371 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1372 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1373 &phi;<SUB>1</SUB> = [15.855, 117.750, 114.750, 12.190], ori = [1, 0, 0],
    1374 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1375 [0.229, 2.400, 5.300] 
    1376  
    1377 Summary of feedback from opening
    1378 /Users/drornoy/Downloads/5b7b5aed8b04/00005.5b7b5aed8b04.allbb.pdb 
    1379 --- 
    1380 warning | Ignored bad PDB record found on line 1 
    1381 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1382 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1383 &phi;<SUB>1</SUB> = [15.855, 118, 115, 12.190], ori = [1, 0, 0],
    1384 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1385 [0.229, 2.400, 5.300] 
    1386  
    1387 Summary of feedback from opening
    1388 /Users/drornoy/Downloads/5b7b5aed8b04/00006.5b7b5aed8b04.allbb.pdb 
    1389 --- 
    1390 warning | Ignored bad PDB record found on line 1 
    1391 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1392 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1393 &phi;<SUB>1</SUB> = [15.855, 118.250, 115.250, 12.190], ori = [1, 0, 0],
    1394 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1395 [0.229, 2.400, 5.300] 
    1396  
    1397 Summary of feedback from opening
    1398 /Users/drornoy/Downloads/5b7b5aed8b04/00007.5b7b5aed8b04.allbb.pdb 
    1399 --- 
    1400 warning | Ignored bad PDB record found on line 1 
    1401 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1402 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1403 &phi;<SUB>1</SUB> = [15.855, 118.500, 115.500, 12.190], ori = [1, 0, 0],
    1404 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1405 [0.229, 2.400, 5.300] 
    1406  
    1407 Summary of feedback from opening
    1408 /Users/drornoy/Downloads/5b7b5aed8b04/00008.5b7b5aed8b04.allbb.pdb 
    1409 --- 
    1410 warning | Ignored bad PDB record found on line 1 
    1411 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1412 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1413 &phi;<SUB>1</SUB> = [15.855, 118.750, 115.750, 12.190], ori = [1, 0, 0],
    1414 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1415 [0.229, 2.400, 5.300] 
    1416  
    1417 Chain information for 00009.5b7b5aed8b04.allbb.pdb #7 
    1418 --- 
    1419 Chain | Description 
    1420 A B C D | No description available 
    1421  
    1422 Chain information for 00001.5b7b5aed8b04.allbb.pdb #8 
    1423 --- 
    1424 Chain | Description 
    1425 A B C D | No description available 
    1426  
    1427 Chain information for 00002.5b7b5aed8b04.allbb.pdb #9 
    1428 --- 
    1429 Chain | Description 
    1430 A B C D | No description available 
    1431  
    1432 Chain information for 00003.5b7b5aed8b04.allbb.pdb #10 
    1433 --- 
    1434 Chain | Description 
    1435 A B C D | No description available 
    1436  
    1437 Chain information for 00004.5b7b5aed8b04.allbb.pdb #11 
    1438 --- 
    1439 Chain | Description 
    1440 A B C D | No description available 
    1441  
    1442 Chain information for 00005.5b7b5aed8b04.allbb.pdb #12 
    1443 --- 
    1444 Chain | Description 
    1445 A B C D | No description available 
    1446  
    1447 Chain information for 00006.5b7b5aed8b04.allbb.pdb #13 
    1448 --- 
    1449 Chain | Description 
    1450 A B C D | No description available 
    1451  
    1452 Chain information for 00007.5b7b5aed8b04.allbb.pdb #14 
    1453 --- 
    1454 Chain | Description 
    1455 A B C D | No description available 
    1456  
    1457 Chain information for 00008.5b7b5aed8b04.allbb.pdb #15 
    1458 --- 
    1459 Chain | Description 
    1460 A B C D | No description available 
    1461  
    1462 
    1463 > align #7-15/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    1464 
    1465 RMSD between 56 atom pairs is 0.010 angstroms 
    1466 RMSD between 56 atom pairs is 0.045 angstroms 
    1467 RMSD between 56 atom pairs is 0.038 angstroms 
    1468 RMSD between 56 atom pairs is 0.031 angstroms 
    1469 RMSD between 56 atom pairs is 0.024 angstroms 
    1470 RMSD between 56 atom pairs is 0.018 angstroms 
    1471 RMSD between 56 atom pairs is 0.011 angstroms 
    1472 RMSD between 56 atom pairs is 0.004 angstroms 
    1473 RMSD between 56 atom pairs is 0.003 angstroms 
    1474 
    1475 > select #7-24
    1476 
    1477 5040 atoms, 5004 bonds, 1008 residues, 9 models selected 
    1478 
    1479 > select #7-15
    1480 
    1481 5040 atoms, 5004 bonds, 1008 residues, 9 models selected 
    1482 
    1483 > hide sel cartoons
    1484 
    1485 > hide sel atoms
    1486 
    1487 > select #7-15@CA
    1488 
    1489 1008 atoms, 1008 residues, 9 models selected 
    1490 
    1491 > show sel atoms
    1492 
    1493 > style sel ball
    1494 
    1495 Changed 1008 atom styles 
    1496 
    1497 > hide #!8 models
    1498 
    1499 > hide #!9 models
    1500 
    1501 > hide #!10 models
    1502 
    1503 > hide #!11 models
    1504 
    1505 > hide #!12 models
    1506 
    1507 > hide #!13 models
    1508 
    1509 > hide #!14 models
    1510 
    1511 > hide #!15 models
    1512 
    1513 > show #!15 models
    1514 
    1515 > hide #!3 models
    1516 
    1517 > hide #!7 models
    1518 
    1519 > show #!7 models
    1520 
    1521 > hide #!7 models
    1522 
    1523 > show #!7 models
    1524 
    1525 > hide #!7 models
    1526 
    1527 > show #!7 models
    1528 
    1529 > hide #!7 models
    1530 
    1531 > show #!7 models
    1532 
    1533 > hide #!7 models
    1534 
    1535 > show #!7 models
    1536 
    1537 > hide #!7 models
    1538 
    1539 > show #!3 models
    1540 
    1541 > hide #!3 models
    1542 
    1543 > show #!3 models
    1544 
    1545 > hide #!3 models
    1546 
    1547 > show #!3 models
    1548 
    1549 > hide #!3 models
    1550 
    1551 > show #!3 models
    1552 
    1553 > show #!7 models
    1554 
    1555 > hide #!7 models
    1556 
    1557 > show #!7 models
    1558 
    1559 > hide #!7 models
    1560 
    1561 > show #!7 models
    1562 
    1563 > hide #!7 models
    1564 
    1565 > show #!7 models
    1566 
    1567 > hide #!7 models
    1568 
    1569 > show #!7 models
    1570 
    1571 > hide #!7 models
    1572 
    1573 > show #!7 models
    1574 
    1575 > hide #!7 models
    1576 
    1577 > show #!7 models
    1578 
    1579 > hide #!7 models
    1580 
    1581 > show #!7 models
    1582 
    1583 > hide #!7 models
    1584 
    1585 > show #!7 models
    1586 
    1587 > hide #!7 models
    1588 
    1589 > show #!7 models
    1590 
    1591 > hide #!7 models
    1592 
    1593 > show #!7 models
    1594 
    1595 > hide #!7 models
    1596 
    1597 > hide #!3 models
    1598 
    1599 > show #!7 models
    1600 
    1601 > hide #!7 models
    1602 
    1603 > show #!7 models
    1604 
    1605 > hide #!7 models
    1606 
    1607 > show #!7 models
    1608 
    1609 > hide #!7 models
    1610 
    1611 > show #!3 models
    1612 
    1613 > hide #!3 models
    1614 
    1615 > show #!7 models
    1616 
    1617 > hide #!15 models
    1618 
    1619 > show #!15 models
    1620 
    1621 > hide #!15 models
    1622 
    1623 > show #!15 models
    1624 
    1625 > hide #!15 models
    1626 
    1627 > show #!15 models
    1628 
    1629 > hide #!15 models
    1630 
    1631 > show #!15 models
    1632 
    1633 > hide #!15 models
    1634 
    1635 > show #!15 models
    1636 
    1637 > hide #!15 models
    1638 
    1639 > show #!15 models
    1640 
    1641 > hide #!15 models
    1642 
    1643 > show #!15 models
    1644 
    1645 > hide #!15 models
    1646 
    1647 > show #!15 models
    1648 
    1649 > close #7-15
    1650 
    1651 > show #!3 models
    1652 
    1653 > open /Users/drornoy/Downloads/31ef15bcf104/00003.31ef15bcf104.allbb.pdb
    1654 > /Users/drornoy/Downloads/31ef15bcf104/00004.31ef15bcf104.allbb.pdb
    1655 > /Users/drornoy/Downloads/31ef15bcf104/00005.31ef15bcf104.allbb.pdb
    1656 > /Users/drornoy/Downloads/31ef15bcf104/00006.31ef15bcf104.allbb.pdb
    1657 > /Users/drornoy/Downloads/31ef15bcf104/00007.31ef15bcf104.allbb.pdb
    1658 > /Users/drornoy/Downloads/31ef15bcf104/00008.31ef15bcf104.allbb.pdb
    1659 > /Users/drornoy/Downloads/31ef15bcf104/00009.31ef15bcf104.allbb.pdb
    1660 > /Users/drornoy/Downloads/31ef15bcf104/00001.31ef15bcf104.allbb.pdb
    1661 > /Users/drornoy/Downloads/31ef15bcf104/00002.31ef15bcf104.allbb.pdb
    1662 
    1663 Summary of feedback from opening
    1664 /Users/drornoy/Downloads/31ef15bcf104/00003.31ef15bcf104.allbb.pdb 
    1665 --- 
    1666 warning | Ignored bad PDB record found on line 1 
    1667 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1668 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1669 &phi;<SUB>1</SUB> = [15.855, 119, 109.250, 12.190], ori = [1, 0, 0],
    1670 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1671 [0.229, 2.400, 5.300] 
    1672  
    1673 Summary of feedback from opening
    1674 /Users/drornoy/Downloads/31ef15bcf104/00004.31ef15bcf104.allbb.pdb 
    1675 --- 
    1676 warning | Ignored bad PDB record found on line 1 
    1677 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1678 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1679 &phi;<SUB>1</SUB> = [15.855, 119, 111.375, 12.190], ori = [1, 0, 0],
    1680 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1681 [0.229, 2.400, 5.300] 
    1682  
    1683 Summary of feedback from opening
    1684 /Users/drornoy/Downloads/31ef15bcf104/00005.31ef15bcf104.allbb.pdb 
    1685 --- 
    1686 warning | Ignored bad PDB record found on line 1 
    1687 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1688 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1689 &phi;<SUB>1</SUB> = [15.855, 119, 113.500, 12.190], ori = [1, 0, 0],
    1690 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1691 [0.229, 2.400, 5.300] 
    1692  
    1693 Summary of feedback from opening
    1694 /Users/drornoy/Downloads/31ef15bcf104/00006.31ef15bcf104.allbb.pdb 
    1695 --- 
    1696 warning | Ignored bad PDB record found on line 1 
    1697 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1698 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1699 &phi;<SUB>1</SUB> = [15.855, 119, 115.625, 12.190], ori = [1, 0, 0],
    1700 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1701 [0.229, 2.400, 5.300] 
    1702  
    1703 Summary of feedback from opening
    1704 /Users/drornoy/Downloads/31ef15bcf104/00007.31ef15bcf104.allbb.pdb 
    1705 --- 
    1706 warning | Ignored bad PDB record found on line 1 
    1707 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1708 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1709 &phi;<SUB>1</SUB> = [15.855, 119, 117.750, 12.190], ori = [1, 0, 0],
    1710 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1711 [0.229, 2.400, 5.300] 
    1712  
    1713 Summary of feedback from opening
    1714 /Users/drornoy/Downloads/31ef15bcf104/00008.31ef15bcf104.allbb.pdb 
    1715 --- 
    1716 warning | Ignored bad PDB record found on line 1 
    1717 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1718 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1719 &phi;<SUB>1</SUB> = [15.855, 119, 119.875, 12.190], ori = [1, 0, 0],
    1720 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1721 [0.229, 2.400, 5.300] 
    1722  
    1723 Summary of feedback from opening
    1724 /Users/drornoy/Downloads/31ef15bcf104/00009.31ef15bcf104.allbb.pdb 
    1725 --- 
    1726 warning | Ignored bad PDB record found on line 1 
    1727 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1728 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1729 &phi;<SUB>1</SUB> = [15.855, 119, 122, 12.190], ori = [1, 0, 0],
    1730 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1731 [0.229, 2.400, 5.300] 
    1732  
    1733 Summary of feedback from opening
    1734 /Users/drornoy/Downloads/31ef15bcf104/00001.31ef15bcf104.allbb.pdb 
    1735 --- 
    1736 warning | Ignored bad PDB record found on line 1 
    1737 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1738 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1739 &phi;<SUB>1</SUB> = [15.855, 119, 105, 12.190], ori = [1, 0, 0],
    1740 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1741 [0.229, 2.400, 5.300] 
    1742  
    1743 Summary of feedback from opening
    1744 /Users/drornoy/Downloads/31ef15bcf104/00002.31ef15bcf104.allbb.pdb 
    1745 --- 
    1746 warning | Ignored bad PDB record found on line 1 
    1747 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1748 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1749 &phi;<SUB>1</SUB> = [15.855, 119, 107.125, 12.190], ori = [1, 0, 0],
    1750 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1751 [0.229, 2.400, 5.300] 
    1752  
    1753 Chain information for 00003.31ef15bcf104.allbb.pdb #7 
    1754 --- 
    1755 Chain | Description 
    1756 A B C D | No description available 
    1757  
    1758 Chain information for 00004.31ef15bcf104.allbb.pdb #8 
    1759 --- 
    1760 Chain | Description 
    1761 A B C D | No description available 
    1762  
    1763 Chain information for 00005.31ef15bcf104.allbb.pdb #9 
    1764 --- 
    1765 Chain | Description 
    1766 A B C D | No description available 
    1767  
    1768 Chain information for 00006.31ef15bcf104.allbb.pdb #10 
    1769 --- 
    1770 Chain | Description 
    1771 A B C D | No description available 
    1772  
    1773 Chain information for 00007.31ef15bcf104.allbb.pdb #11 
    1774 --- 
    1775 Chain | Description 
    1776 A B C D | No description available 
    1777  
    1778 Chain information for 00008.31ef15bcf104.allbb.pdb #12 
    1779 --- 
    1780 Chain | Description 
    1781 A B C D | No description available 
    1782  
    1783 Chain information for 00009.31ef15bcf104.allbb.pdb #13 
    1784 --- 
    1785 Chain | Description 
    1786 A B C D | No description available 
    1787  
    1788 Chain information for 00001.31ef15bcf104.allbb.pdb #14 
    1789 --- 
    1790 Chain | Description 
    1791 A B C D | No description available 
    1792  
    1793 Chain information for 00002.31ef15bcf104.allbb.pdb #15 
    1794 --- 
    1795 Chain | Description 
    1796 A B C D | No description available 
    1797  
    1798 
    1799 > select #7-15
    1800 
    1801 5040 atoms, 5004 bonds, 1008 residues, 9 models selected 
    1802 
    1803 > hide sel cartoons
    1804 
    1805 > hide sel atoms
    1806 
    1807 > select #7-15@CA
    1808 
    1809 1008 atoms, 1008 residues, 9 models selected 
    1810 
    1811 > show sel atoms
    1812 
    1813 > style sel ball
    1814 
    1815 Changed 1008 atom styles 
    1816 
    1817 > align #7-15/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    1818 
    1819 RMSD between 56 atom pairs is 0.010 angstroms 
    1820 [Repeated 8 time(s)]
    1821 
    1822 > hide #!14 models
    1823 
    1824 > hide #!15 models
    1825 
    1826 > hide #!7 models
    1827 
    1828 > hide #!8 models
    1829 
    1830 > hide #!9 models
    1831 
    1832 > hide #!10 models
    1833 
    1834 > hide #!11 models
    1835 
    1836 > hide #!12 models
    1837 
    1838 > hide #!13 models
    1839 
    1840 > show #!13 models
    1841 
    1842 > close #7-15
    1843 
    1844 > open /Users/drornoy/Downloads/f76ef43e5ff5/00001.f76ef43e5ff5.allbb.pdb
    1845 > /Users/drornoy/Downloads/f76ef43e5ff5/00002.f76ef43e5ff5.allbb.pdb
    1846 > /Users/drornoy/Downloads/f76ef43e5ff5/00003.f76ef43e5ff5.allbb.pdb
    1847 > /Users/drornoy/Downloads/f76ef43e5ff5/00004.f76ef43e5ff5.allbb.pdb
    1848 > /Users/drornoy/Downloads/f76ef43e5ff5/00005.f76ef43e5ff5.allbb.pdb
    1849 > /Users/drornoy/Downloads/f76ef43e5ff5/00006.f76ef43e5ff5.allbb.pdb
    1850 
    1851 Summary of feedback from opening
    1852 /Users/drornoy/Downloads/f76ef43e5ff5/00001.f76ef43e5ff5.allbb.pdb 
    1853 --- 
    1854 warning | Ignored bad PDB record found on line 1 
    1855 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1856 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1857 &phi;<SUB>1</SUB> = [15.855, 119, 123, 12.190], ori = [1, 0, 0],
    1858 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1859 [0.229, 2.400, 5.300] 
    1860  
    1861 Summary of feedback from opening
    1862 /Users/drornoy/Downloads/f76ef43e5ff5/00002.f76ef43e5ff5.allbb.pdb 
    1863 --- 
    1864 warning | Ignored bad PDB record found on line 1 
    1865 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1866 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1867 &phi;<SUB>1</SUB> = [15.855, 119, 124.800, 12.190], ori = [1, 0, 0],
    1868 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1869 [0.229, 2.400, 5.300] 
    1870  
    1871 Summary of feedback from opening
    1872 /Users/drornoy/Downloads/f76ef43e5ff5/00003.f76ef43e5ff5.allbb.pdb 
    1873 --- 
    1874 warning | Ignored bad PDB record found on line 1 
    1875 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1876 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1877 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    1878 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1879 [0.229, 2.400, 5.300] 
    1880  
    1881 Summary of feedback from opening
    1882 /Users/drornoy/Downloads/f76ef43e5ff5/00004.f76ef43e5ff5.allbb.pdb 
    1883 --- 
    1884 warning | Ignored bad PDB record found on line 1 
    1885 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1886 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1887 &phi;<SUB>1</SUB> = [15.855, 119, 128.400, 12.190], ori = [1, 0, 0],
    1888 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1889 [0.229, 2.400, 5.300] 
    1890  
    1891 Summary of feedback from opening
    1892 /Users/drornoy/Downloads/f76ef43e5ff5/00005.f76ef43e5ff5.allbb.pdb 
    1893 --- 
    1894 warning | Ignored bad PDB record found on line 1 
    1895 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1896 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1897 &phi;<SUB>1</SUB> = [15.855, 119, 130.200, 12.190], ori = [1, 0, 0],
    1898 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1899 [0.229, 2.400, 5.300] 
    1900  
    1901 Summary of feedback from opening
    1902 /Users/drornoy/Downloads/f76ef43e5ff5/00006.f76ef43e5ff5.allbb.pdb 
    1903 --- 
    1904 warning | Ignored bad PDB record found on line 1 
    1905 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1906 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1907 &phi;<SUB>1</SUB> = [15.855, 119, 132, 12.190], ori = [1, 0, 0],
    1908 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    1909 [0.229, 2.400, 5.300] 
    1910  
    1911 Chain information for 00001.f76ef43e5ff5.allbb.pdb #7 
    1912 --- 
    1913 Chain | Description 
    1914 A B C D | No description available 
    1915  
    1916 Chain information for 00002.f76ef43e5ff5.allbb.pdb #8 
    1917 --- 
    1918 Chain | Description 
    1919 A B C D | No description available 
    1920  
    1921 Chain information for 00003.f76ef43e5ff5.allbb.pdb #9 
    1922 --- 
    1923 Chain | Description 
    1924 A B C D | No description available 
    1925  
    1926 Chain information for 00004.f76ef43e5ff5.allbb.pdb #10 
    1927 --- 
    1928 Chain | Description 
    1929 A B C D | No description available 
    1930  
    1931 Chain information for 00005.f76ef43e5ff5.allbb.pdb #11 
    1932 --- 
    1933 Chain | Description 
    1934 A B C D | No description available 
    1935  
    1936 Chain information for 00006.f76ef43e5ff5.allbb.pdb #12 
    1937 --- 
    1938 Chain | Description 
    1939 A B C D | No description available 
    1940  
    1941 
    1942 > align #7-12/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    1943 
    1944 RMSD between 56 atom pairs is 0.010 angstroms 
    1945 [Repeated 5 time(s)]
    1946 
    1947 > select #7-12
    1948 
    1949 3360 atoms, 3336 bonds, 672 residues, 6 models selected 
    1950 
    1951 > hide sel cartoons
    1952 
    1953 > hide sel atoms
    1954 
    1955 > select #7-12@CA
    1956 
    1957 672 atoms, 672 residues, 6 models selected 
    1958 
    1959 > style sel ball
    1960 
    1961 Changed 672 atom styles 
    1962 
    1963 > show sel atoms
    1964 
    1965 > hide #!12 models
    1966 
    1967 > hide #!11 models
    1968 
    1969 > show #!11 models
    1970 
    1971 > hide #!10 models
    1972 
    1973 > hide #!9 models
    1974 
    1975 > hide #!8 models
    1976 
    1977 > hide #!7 models
    1978 
    1979 > close #7-12
    1980 
    1981 > open /Users/drornoy/Downloads/366152f2476f/00001.366152f2476f.allbb.pdb
    1982 > /Users/drornoy/Downloads/366152f2476f/00002.366152f2476f.allbb.pdb
    1983 > /Users/drornoy/Downloads/366152f2476f/00003.366152f2476f.allbb.pdb
    1984 > /Users/drornoy/Downloads/366152f2476f/00004.366152f2476f.allbb.pdb
    1985 > /Users/drornoy/Downloads/366152f2476f/00005.366152f2476f.allbb.pdb
    1986 > /Users/drornoy/Downloads/366152f2476f/00006.366152f2476f.allbb.pdb
    1987 > /Users/drornoy/Downloads/366152f2476f/00007.366152f2476f.allbb.pdb
    1988 > /Users/drornoy/Downloads/366152f2476f/00008.366152f2476f.allbb.pdb
    1989 > /Users/drornoy/Downloads/366152f2476f/00009.366152f2476f.allbb.pdb
    1990 > /Users/drornoy/Downloads/366152f2476f/00010.366152f2476f.allbb.pdb
    1991 
    1992 Summary of feedback from opening
    1993 /Users/drornoy/Downloads/366152f2476f/00001.366152f2476f.allbb.pdb 
    1994 --- 
    1995 warning | Ignored bad PDB record found on line 1 
    1996 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    1997 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    1998 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    1999 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2000 [0.229, 2.400, 5.500] 
    2001  
    2002 Summary of feedback from opening
    2003 /Users/drornoy/Downloads/366152f2476f/00002.366152f2476f.allbb.pdb 
    2004 --- 
    2005 warning | Ignored bad PDB record found on line 1 
    2006 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2007 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2008 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2009 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2010 [0.229, 2.400, 6] 
    2011  
    2012 Summary of feedback from opening
    2013 /Users/drornoy/Downloads/366152f2476f/00003.366152f2476f.allbb.pdb 
    2014 --- 
    2015 warning | Ignored bad PDB record found on line 1 
    2016 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2017 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2018 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2019 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2020 [0.229, 2.400, 6.500] 
    2021  
    2022 Summary of feedback from opening
    2023 /Users/drornoy/Downloads/366152f2476f/00004.366152f2476f.allbb.pdb 
    2024 --- 
    2025 warning | Ignored bad PDB record found on line 1 
    2026 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2027 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2028 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2029 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2030 [0.229, 2.400, 7] 
    2031  
    2032 Summary of feedback from opening
    2033 /Users/drornoy/Downloads/366152f2476f/00005.366152f2476f.allbb.pdb 
    2034 --- 
    2035 warning | Ignored bad PDB record found on line 1 
    2036 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2037 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2038 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2039 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2040 [0.229, 2.400, 7.500] 
    2041  
    2042 Summary of feedback from opening
    2043 /Users/drornoy/Downloads/366152f2476f/00006.366152f2476f.allbb.pdb 
    2044 --- 
    2045 warning | Ignored bad PDB record found on line 1 
    2046 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2047 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2048 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2049 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2050 [0.229, 2.400, 8] 
    2051  
    2052 Summary of feedback from opening
    2053 /Users/drornoy/Downloads/366152f2476f/00007.366152f2476f.allbb.pdb 
    2054 --- 
    2055 warning | Ignored bad PDB record found on line 1 
    2056 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2057 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2058 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2059 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2060 [0.229, 2.400, 8.500] 
    2061  
    2062 Summary of feedback from opening
    2063 /Users/drornoy/Downloads/366152f2476f/00008.366152f2476f.allbb.pdb 
    2064 --- 
    2065 warning | Ignored bad PDB record found on line 1 
    2066 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2067 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2068 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2069 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2070 [0.229, 2.400, 9] 
    2071  
    2072 Summary of feedback from opening
    2073 /Users/drornoy/Downloads/366152f2476f/00009.366152f2476f.allbb.pdb 
    2074 --- 
    2075 warning | Ignored bad PDB record found on line 1 
    2076 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2077 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2078 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2079 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2080 [0.229, 2.400, 9.500] 
    2081  
    2082 Summary of feedback from opening
    2083 /Users/drornoy/Downloads/366152f2476f/00010.366152f2476f.allbb.pdb 
    2084 --- 
    2085 warning | Ignored bad PDB record found on line 1 
    2086 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2087 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2088 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2089 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2090 [0.229, 2.400, 10] 
    2091  
    2092 Chain information for 00001.366152f2476f.allbb.pdb #7 
    2093 --- 
    2094 Chain | Description 
    2095 A B C D | No description available 
    2096  
    2097 Chain information for 00002.366152f2476f.allbb.pdb #8 
    2098 --- 
    2099 Chain | Description 
    2100 A B C D | No description available 
    2101  
    2102 Chain information for 00003.366152f2476f.allbb.pdb #9 
    2103 --- 
    2104 Chain | Description 
    2105 A B C D | No description available 
    2106  
    2107 Chain information for 00004.366152f2476f.allbb.pdb #10 
    2108 --- 
    2109 Chain | Description 
    2110 A B C D | No description available 
    2111  
    2112 Chain information for 00005.366152f2476f.allbb.pdb #11 
    2113 --- 
    2114 Chain | Description 
    2115 A B C D | No description available 
    2116  
    2117 Chain information for 00006.366152f2476f.allbb.pdb #12 
    2118 --- 
    2119 Chain | Description 
    2120 A B C D | No description available 
    2121  
    2122 Chain information for 00007.366152f2476f.allbb.pdb #13 
    2123 --- 
    2124 Chain | Description 
    2125 A B C D | No description available 
    2126  
    2127 Chain information for 00008.366152f2476f.allbb.pdb #14 
    2128 --- 
    2129 Chain | Description 
    2130 A B C D | No description available 
    2131  
    2132 Chain information for 00009.366152f2476f.allbb.pdb #15 
    2133 --- 
    2134 Chain | Description 
    2135 A B C D | No description available 
    2136  
    2137 Chain information for 00010.366152f2476f.allbb.pdb #16 
    2138 --- 
    2139 Chain | Description 
    2140 A B C D | No description available 
    2141  
    2142 
    2143 > select #7-16
    2144 
    2145 5600 atoms, 5560 bonds, 1120 residues, 10 models selected 
    2146 
    2147 > hide sel atoms
    2148 
    2149 > hide sel cartoons
    2150 
    2151 > select #7-16@CA
    2152 
    2153 1120 atoms, 1120 residues, 10 models selected 
    2154 
    2155 > align #7-16/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    2156 
    2157 RMSD between 56 atom pairs is 0.010 angstroms 
    2158 [Repeated 9 time(s)]
    2159 
    2160 > select #7-16@CA
    2161 
    2162 1120 atoms, 1120 residues, 10 models selected 
    2163 
    2164 > show sel atoms
    2165 
    2166 > style sel ball
    2167 
    2168 Changed 1120 atom styles 
    2169 
    2170 > hide #!7 models
    2171 
    2172 > hide #!8 models
    2173 
    2174 > hide #!9 models
    2175 
    2176 > hide #!12 models
    2177 
    2178 > hide #!13 models
    2179 
    2180 > hide #!14 models
    2181 
    2182 > hide #!15 models
    2183 
    2184 > hide #!16 models
    2185 
    2186 > show #!7 models
    2187 
    2188 > hide #!10 models
    2189 
    2190 > hide #!11 models
    2191 
    2192 > close #7-16
    2193 
    2194 > open /Users/drornoy/Downloads/de9a1b362df7/00008.de9a1b362df7.allbb.pdb
    2195 > /Users/drornoy/Downloads/de9a1b362df7/00009.de9a1b362df7.allbb.pdb
    2196 > /Users/drornoy/Downloads/de9a1b362df7/00010.de9a1b362df7.allbb.pdb
    2197 > /Users/drornoy/Downloads/de9a1b362df7/00001.de9a1b362df7.allbb.pdb
    2198 > /Users/drornoy/Downloads/de9a1b362df7/00002.de9a1b362df7.allbb.pdb
    2199 > /Users/drornoy/Downloads/de9a1b362df7/00003.de9a1b362df7.allbb.pdb
    2200 > /Users/drornoy/Downloads/de9a1b362df7/00004.de9a1b362df7.allbb.pdb
    2201 > /Users/drornoy/Downloads/de9a1b362df7/00005.de9a1b362df7.allbb.pdb
    2202 > /Users/drornoy/Downloads/de9a1b362df7/00006.de9a1b362df7.allbb.pdb
    2203 > /Users/drornoy/Downloads/de9a1b362df7/00007.de9a1b362df7.allbb.pdb
    2204 
    2205 Summary of feedback from opening
    2206 /Users/drornoy/Downloads/de9a1b362df7/00008.de9a1b362df7.allbb.pdb 
    2207 --- 
    2208 warning | Ignored bad PDB record found on line 1 
    2209 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2210 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2211 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2212 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2213 [0.229, 2.400, 3.111] 
    2214  
    2215 Summary of feedback from opening
    2216 /Users/drornoy/Downloads/de9a1b362df7/00009.de9a1b362df7.allbb.pdb 
    2217 --- 
    2218 warning | Ignored bad PDB record found on line 1 
    2219 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2220 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2221 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2222 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2223 [0.229, 2.400, 3.556] 
    2224  
    2225 Summary of feedback from opening
    2226 /Users/drornoy/Downloads/de9a1b362df7/00010.de9a1b362df7.allbb.pdb 
    2227 --- 
    2228 warning | Ignored bad PDB record found on line 1 
    2229 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2230 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2231 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2232 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2233 [0.229, 2.400, 4] 
    2234  
    2235 Summary of feedback from opening
    2236 /Users/drornoy/Downloads/de9a1b362df7/00001.de9a1b362df7.allbb.pdb 
    2237 --- 
    2238 warning | Ignored bad PDB record found on line 1 
    2239 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2240 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2241 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2242 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2243 [0.229, 2.400, 0] 
    2244  
    2245 Summary of feedback from opening
    2246 /Users/drornoy/Downloads/de9a1b362df7/00002.de9a1b362df7.allbb.pdb 
    2247 --- 
    2248 warning | Ignored bad PDB record found on line 1 
    2249 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2250 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2251 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2252 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2253 [0.229, 2.400, 0.444] 
    2254  
    2255 Summary of feedback from opening
    2256 /Users/drornoy/Downloads/de9a1b362df7/00003.de9a1b362df7.allbb.pdb 
    2257 --- 
    2258 warning | Ignored bad PDB record found on line 1 
    2259 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2260 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2261 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2262 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2263 [0.229, 2.400, 0.889] 
    2264  
    2265 Summary of feedback from opening
    2266 /Users/drornoy/Downloads/de9a1b362df7/00004.de9a1b362df7.allbb.pdb 
    2267 --- 
    2268 warning | Ignored bad PDB record found on line 1 
    2269 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2270 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2271 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2272 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2273 [0.229, 2.400, 1.333] 
    2274  
    2275 Summary of feedback from opening
    2276 /Users/drornoy/Downloads/de9a1b362df7/00005.de9a1b362df7.allbb.pdb 
    2277 --- 
    2278 warning | Ignored bad PDB record found on line 1 
    2279 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2280 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2281 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2282 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2283 [0.229, 2.400, 1.778] 
    2284  
    2285 Summary of feedback from opening
    2286 /Users/drornoy/Downloads/de9a1b362df7/00006.de9a1b362df7.allbb.pdb 
    2287 --- 
    2288 warning | Ignored bad PDB record found on line 1 
    2289 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2290 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2291 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2292 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2293 [0.229, 2.400, 2.222] 
    2294  
    2295 Summary of feedback from opening
    2296 /Users/drornoy/Downloads/de9a1b362df7/00007.de9a1b362df7.allbb.pdb 
    2297 --- 
    2298 warning | Ignored bad PDB record found on line 1 
    2299 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2300 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2301 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    2302 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2303 [0.229, 2.400, 2.667] 
    2304  
    2305 Chain information for 00008.de9a1b362df7.allbb.pdb #7 
    2306 --- 
    2307 Chain | Description 
    2308 A B C D | No description available 
    2309  
    2310 Chain information for 00009.de9a1b362df7.allbb.pdb #8 
    2311 --- 
    2312 Chain | Description 
    2313 A B C D | No description available 
    2314  
    2315 Chain information for 00010.de9a1b362df7.allbb.pdb #9 
    2316 --- 
    2317 Chain | Description 
    2318 A B C D | No description available 
    2319  
    2320 Chain information for 00001.de9a1b362df7.allbb.pdb #10 
    2321 --- 
    2322 Chain | Description 
    2323 A B C D | No description available 
    2324  
    2325 Chain information for 00002.de9a1b362df7.allbb.pdb #11 
    2326 --- 
    2327 Chain | Description 
    2328 A B C D | No description available 
    2329  
    2330 Chain information for 00003.de9a1b362df7.allbb.pdb #12 
    2331 --- 
    2332 Chain | Description 
    2333 A B C D | No description available 
    2334  
    2335 Chain information for 00004.de9a1b362df7.allbb.pdb #13 
    2336 --- 
    2337 Chain | Description 
    2338 A B C D | No description available 
    2339  
    2340 Chain information for 00005.de9a1b362df7.allbb.pdb #14 
    2341 --- 
    2342 Chain | Description 
    2343 A B C D | No description available 
    2344  
    2345 Chain information for 00006.de9a1b362df7.allbb.pdb #15 
    2346 --- 
    2347 Chain | Description 
    2348 A B C D | No description available 
    2349  
    2350 Chain information for 00007.de9a1b362df7.allbb.pdb #16 
    2351 --- 
    2352 Chain | Description 
    2353 A B C D | No description available 
    2354  
    2355 
    2356 > select #7-16
    2357 
    2358 5600 atoms, 5560 bonds, 1120 residues, 10 models selected 
    2359 
    2360 > hide sel atoms
    2361 
    2362 > hide sel cartoons
    2363 
    2364 > select #7-16@CA
    2365 
    2366 1120 atoms, 1120 residues, 10 models selected 
    2367 
    2368 > show sel atoms
    2369 
    2370 > style sel ball
    2371 
    2372 Changed 1120 atom styles 
    2373 
    2374 > align #7-16/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    2375 
    2376 RMSD between 56 atom pairs is 0.010 angstroms 
    2377 [Repeated 9 time(s)]
    2378 
    2379 > hide #!7 models
    2380 
    2381 > hide #!8 models
    2382 
    2383 > hide #!9 models
    2384 
    2385 > hide #!10 models
    2386 
    2387 > hide #!11 models
    2388 
    2389 > hide #!12 models
    2390 
    2391 > hide #!15 models
    2392 
    2393 > hide #!14 models
    2394 
    2395 > hide #!13 models
    2396 
    2397 > show #!15 models
    2398 
    2399 > hide #!15 models
    2400 
    2401 > show #!14 models
    2402 
    2403 > hide #!14 models
    2404 
    2405 > show #!12 models
    2406 
    2407 > hide #!12 models
    2408 
    2409 > close #7-16
    2410 
    2411 > open /Users/drornoy/Downloads/552f64edb791/00003.552f64edb791.allbb.pdb
    2412 > /Users/drornoy/Downloads/552f64edb791/00004.552f64edb791.allbb.pdb
    2413 > /Users/drornoy/Downloads/552f64edb791/00005.552f64edb791.allbb.pdb
    2414 > /Users/drornoy/Downloads/552f64edb791/00006.552f64edb791.allbb.pdb
    2415 > /Users/drornoy/Downloads/552f64edb791/00007.552f64edb791.allbb.pdb
    2416 > /Users/drornoy/Downloads/552f64edb791/00008.552f64edb791.allbb.pdb
    2417 > /Users/drornoy/Downloads/552f64edb791/00009.552f64edb791.allbb.pdb
    2418 > /Users/drornoy/Downloads/552f64edb791/00010.552f64edb791.allbb.pdb
    2419 > /Users/drornoy/Downloads/552f64edb791/00001.552f64edb791.allbb.pdb
    2420 > /Users/drornoy/Downloads/552f64edb791/00002.552f64edb791.allbb.pdb
    2421 
    2422 Summary of feedback from opening
    2423 /Users/drornoy/Downloads/552f64edb791/00003.552f64edb791.allbb.pdb 
    2424 --- 
    2425 warning | Ignored bad PDB record found on line 1 
    2426 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2427 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2428 &phi;<SUB>1</SUB> = [15.855, 119, 124.600, 37.778], ori = [1, 0, 0],
    2429 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2430 [0.229, 2.400, 2.650] 
    2431  
    2432 Summary of feedback from opening
    2433 /Users/drornoy/Downloads/552f64edb791/00004.552f64edb791.allbb.pdb 
    2434 --- 
    2435 warning | Ignored bad PDB record found on line 1 
    2436 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2437 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2438 &phi;<SUB>1</SUB> = [15.855, 119, 125.400, 46.667], ori = [1, 0, 0],
    2439 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2440 [0.229, 2.400, 2.650] 
    2441  
    2442 Summary of feedback from opening
    2443 /Users/drornoy/Downloads/552f64edb791/00005.552f64edb791.allbb.pdb 
    2444 --- 
    2445 warning | Ignored bad PDB record found on line 1 
    2446 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2447 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2448 &phi;<SUB>1</SUB> = [15.855, 119, 126.200, 55.556], ori = [1, 0, 0],
    2449 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2450 [0.229, 2.400, 2.650] 
    2451  
    2452 Summary of feedback from opening
    2453 /Users/drornoy/Downloads/552f64edb791/00006.552f64edb791.allbb.pdb 
    2454 --- 
    2455 warning | Ignored bad PDB record found on line 1 
    2456 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2457 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2458 &phi;<SUB>1</SUB> = [15.855, 119, 127, 64.444], ori = [1, 0, 0],
    2459 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2460 [0.229, 2.400, 2.650] 
    2461  
    2462 Summary of feedback from opening
    2463 /Users/drornoy/Downloads/552f64edb791/00007.552f64edb791.allbb.pdb 
    2464 --- 
    2465 warning | Ignored bad PDB record found on line 1 
    2466 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2467 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2468 &phi;<SUB>1</SUB> = [15.855, 119, 127.800, 73.333], ori = [1, 0, 0],
    2469 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2470 [0.229, 2.400, 2.650] 
    2471  
    2472 Summary of feedback from opening
    2473 /Users/drornoy/Downloads/552f64edb791/00008.552f64edb791.allbb.pdb 
    2474 --- 
    2475 warning | Ignored bad PDB record found on line 1 
    2476 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2477 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2478 &phi;<SUB>1</SUB> = [15.855, 119, 128.600, 82.222], ori = [1, 0, 0],
    2479 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2480 [0.229, 2.400, 2.650] 
    2481  
    2482 Summary of feedback from opening
    2483 /Users/drornoy/Downloads/552f64edb791/00009.552f64edb791.allbb.pdb 
    2484 --- 
    2485 warning | Ignored bad PDB record found on line 1 
    2486 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2487 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2488 &phi;<SUB>1</SUB> = [15.855, 119, 129.400, 91.111], ori = [1, 0, 0],
    2489 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2490 [0.229, 2.400, 2.650] 
    2491  
    2492 Summary of feedback from opening
    2493 /Users/drornoy/Downloads/552f64edb791/00010.552f64edb791.allbb.pdb 
    2494 --- 
    2495 warning | Ignored bad PDB record found on line 1 
    2496 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2497 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2498 &phi;<SUB>1</SUB> = [15.855, 119, 130.200, 100], ori = [1, 0, 0],
    2499 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2500 [0.229, 2.400, 2.650] 
    2501  
    2502 Summary of feedback from opening
    2503 /Users/drornoy/Downloads/552f64edb791/00001.552f64edb791.allbb.pdb 
    2504 --- 
    2505 warning | Ignored bad PDB record found on line 1 
    2506 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2507 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2508 &phi;<SUB>1</SUB> = [15.855, 119, 123, 20], ori = [1, 0, 0],
    2509 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2510 [0.229, 2.400, 2.650] 
    2511  
    2512 Summary of feedback from opening
    2513 /Users/drornoy/Downloads/552f64edb791/00002.552f64edb791.allbb.pdb 
    2514 --- 
    2515 warning | Ignored bad PDB record found on line 1 
    2516 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2517 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2518 &phi;<SUB>1</SUB> = [15.855, 119, 123.800, 28.889], ori = [1, 0, 0],
    2519 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2520 [0.229, 2.400, 2.650] 
    2521  
    2522 Chain information for 00003.552f64edb791.allbb.pdb #7 
    2523 --- 
    2524 Chain | Description 
    2525 A B C D | No description available 
    2526  
    2527 Chain information for 00004.552f64edb791.allbb.pdb #8 
    2528 --- 
    2529 Chain | Description 
    2530 A B C D | No description available 
    2531  
    2532 Chain information for 00005.552f64edb791.allbb.pdb #9 
    2533 --- 
    2534 Chain | Description 
    2535 A B C D | No description available 
    2536  
    2537 Chain information for 00006.552f64edb791.allbb.pdb #10 
    2538 --- 
    2539 Chain | Description 
    2540 A B C D | No description available 
    2541  
    2542 Chain information for 00007.552f64edb791.allbb.pdb #11 
    2543 --- 
    2544 Chain | Description 
    2545 A B C D | No description available 
    2546  
    2547 Chain information for 00008.552f64edb791.allbb.pdb #12 
    2548 --- 
    2549 Chain | Description 
    2550 A B C D | No description available 
    2551  
    2552 Chain information for 00009.552f64edb791.allbb.pdb #13 
    2553 --- 
    2554 Chain | Description 
    2555 A B C D | No description available 
    2556  
    2557 Chain information for 00010.552f64edb791.allbb.pdb #14 
    2558 --- 
    2559 Chain | Description 
    2560 A B C D | No description available 
    2561  
    2562 Chain information for 00001.552f64edb791.allbb.pdb #15 
    2563 --- 
    2564 Chain | Description 
    2565 A B C D | No description available 
    2566  
    2567 Chain information for 00002.552f64edb791.allbb.pdb #16 
    2568 --- 
    2569 Chain | Description 
    2570 A B C D | No description available 
    2571  
    2572 
    2573 > align #7-16/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    2574 
    2575 RMSD between 56 atom pairs is 0.010 angstroms 
    2576 [Repeated 9 time(s)]
    2577 
    2578 > select #7-16
    2579 
    2580 5600 atoms, 5560 bonds, 1120 residues, 10 models selected 
    2581 
    2582 > hide sel cartoons
    2583 
    2584 > hide sel atoms
    2585 
    2586 > select #7-16@CA
    2587 
    2588 1120 atoms, 1120 residues, 10 models selected 
    2589 
    2590 > show sel atoms
    2591 
    2592 > style sel ball
    2593 
    2594 Changed 1120 atom styles 
    2595 
    2596 > hide #!15 models
    2597 
    2598 > hide #!16 models
    2599 
    2600 > show #!16 models
    2601 
    2602 > hide #!14 models
    2603 
    2604 > hide #!13 models
    2605 
    2606 > hide #!12 models
    2607 
    2608 > hide #!11 models
    2609 
    2610 > hide #!10 models
    2611 
    2612 > hide #!9 models
    2613 
    2614 > hide #!8 models
    2615 
    2616 > hide #!7 models
    2617 
    2618 > show #!14 models
    2619 
    2620 > hide #!14 models
    2621 
    2622 > show #!14 models
    2623 
    2624 > hide #!14 models
    2625 
    2626 > show #!12 models
    2627 
    2628 > hide #!12 models
    2629 
    2630 > hide #!16 models
    2631 
    2632 > show #!16 models
    2633 
    2634 > hide #!16 models
    2635 
    2636 > show #!15 models
    2637 
    2638 > show #!16 models
    2639 
    2640 > show #!7 models
    2641 
    2642 > show #!8 models
    2643 
    2644 > hide #!8 models
    2645 
    2646 > hide #!15 models
    2647 
    2648 > hide #!16 models
    2649 
    2650 > show #!8 models
    2651 
    2652 > hide #!7 models
    2653 
    2654 > show #!9 models
    2655 
    2656 > show #!10 models
    2657 
    2658 > hide #!9 models
    2659 
    2660 > hide #!8 models
    2661 
    2662 > show #!11 models
    2663 
    2664 > show #!12 models
    2665 
    2666 > show #!13 models
    2667 
    2668 > hide #!13 models
    2669 
    2670 > close #7-16
    2671 
    2672 > open /Users/drornoy/Downloads/71efc93ad489/00001.71efc93ad489.allbb.pdb
    2673 > /Users/drornoy/Downloads/71efc93ad489/00002.71efc93ad489.allbb.pdb
    2674 > /Users/drornoy/Downloads/71efc93ad489/00003.71efc93ad489.allbb.pdb
    2675 > /Users/drornoy/Downloads/71efc93ad489/00004.71efc93ad489.allbb.pdb
    2676 > /Users/drornoy/Downloads/71efc93ad489/00005.71efc93ad489.allbb.pdb
    2677 > /Users/drornoy/Downloads/71efc93ad489/00006.71efc93ad489.allbb.pdb
    2678 > /Users/drornoy/Downloads/71efc93ad489/00007.71efc93ad489.allbb.pdb
    2679 > /Users/drornoy/Downloads/71efc93ad489/00008.71efc93ad489.allbb.pdb
    2680 > /Users/drornoy/Downloads/71efc93ad489/00009.71efc93ad489.allbb.pdb
    2681 > /Users/drornoy/Downloads/71efc93ad489/00010.71efc93ad489.allbb.pdb
    2682 
    2683 Summary of feedback from opening
    2684 /Users/drornoy/Downloads/71efc93ad489/00001.71efc93ad489.allbb.pdb 
    2685 --- 
    2686 warning | Ignored bad PDB record found on line 1 
    2687 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2688 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2689 &phi;<SUB>1</SUB> = [15.855, 119, 123, 13], ori = [1, 0, 0],
    2690 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2691 [0.229, 2.400, 2.650] 
    2692  
    2693 Summary of feedback from opening
    2694 /Users/drornoy/Downloads/71efc93ad489/00002.71efc93ad489.allbb.pdb 
    2695 --- 
    2696 warning | Ignored bad PDB record found on line 1 
    2697 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2698 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2699 &phi;<SUB>1</SUB> = [15.855, 119, 123.800, 18.222], ori = [1, 0, 0],
    2700 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2701 [0.229, 2.400, 2.650] 
    2702  
    2703 Summary of feedback from opening
    2704 /Users/drornoy/Downloads/71efc93ad489/00003.71efc93ad489.allbb.pdb 
    2705 --- 
    2706 warning | Ignored bad PDB record found on line 1 
    2707 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2708 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2709 &phi;<SUB>1</SUB> = [15.855, 119, 124.600, 23.444], ori = [1, 0, 0],
    2710 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2711 [0.229, 2.400, 2.650] 
    2712  
    2713 Summary of feedback from opening
    2714 /Users/drornoy/Downloads/71efc93ad489/00004.71efc93ad489.allbb.pdb 
    2715 --- 
    2716 warning | Ignored bad PDB record found on line 1 
    2717 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2718 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2719 &phi;<SUB>1</SUB> = [15.855, 119, 125.400, 28.667], ori = [1, 0, 0],
    2720 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2721 [0.229, 2.400, 2.650] 
    2722  
    2723 Summary of feedback from opening
    2724 /Users/drornoy/Downloads/71efc93ad489/00005.71efc93ad489.allbb.pdb 
    2725 --- 
    2726 warning | Ignored bad PDB record found on line 1 
    2727 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2728 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2729 &phi;<SUB>1</SUB> = [15.855, 119, 126.200, 33.889], ori = [1, 0, 0],
    2730 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2731 [0.229, 2.400, 2.650] 
    2732  
    2733 Summary of feedback from opening
    2734 /Users/drornoy/Downloads/71efc93ad489/00006.71efc93ad489.allbb.pdb 
    2735 --- 
    2736 warning | Ignored bad PDB record found on line 1 
    2737 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2738 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2739 &phi;<SUB>1</SUB> = [15.855, 119, 127, 39.111], ori = [1, 0, 0],
    2740 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2741 [0.229, 2.400, 2.650] 
    2742  
    2743 Summary of feedback from opening
    2744 /Users/drornoy/Downloads/71efc93ad489/00007.71efc93ad489.allbb.pdb 
    2745 --- 
    2746 warning | Ignored bad PDB record found on line 1 
    2747 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2748 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2749 &phi;<SUB>1</SUB> = [15.855, 119, 127.800, 44.333], ori = [1, 0, 0],
    2750 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2751 [0.229, 2.400, 2.650] 
    2752  
    2753 Summary of feedback from opening
    2754 /Users/drornoy/Downloads/71efc93ad489/00008.71efc93ad489.allbb.pdb 
    2755 --- 
    2756 warning | Ignored bad PDB record found on line 1 
    2757 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2758 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2759 &phi;<SUB>1</SUB> = [15.855, 119, 128.600, 49.556], ori = [1, 0, 0],
    2760 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2761 [0.229, 2.400, 2.650] 
    2762  
    2763 Summary of feedback from opening
    2764 /Users/drornoy/Downloads/71efc93ad489/00009.71efc93ad489.allbb.pdb 
    2765 --- 
    2766 warning | Ignored bad PDB record found on line 1 
    2767 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2768 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2769 &phi;<SUB>1</SUB> = [15.855, 119, 129.400, 54.778], ori = [1, 0, 0],
    2770 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2771 [0.229, 2.400, 2.650] 
    2772  
    2773 Summary of feedback from opening
    2774 /Users/drornoy/Downloads/71efc93ad489/00010.71efc93ad489.allbb.pdb 
    2775 --- 
    2776 warning | Ignored bad PDB record found on line 1 
    2777 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2778 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2779 &phi;<SUB>1</SUB> = [15.855, 119, 130.200, 60], ori = [1, 0, 0],
    2780 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2781 [0.229, 2.400, 2.650] 
    2782  
    2783 Chain information for 00001.71efc93ad489.allbb.pdb #7 
    2784 --- 
    2785 Chain | Description 
    2786 A B C D | No description available 
    2787  
    2788 Chain information for 00002.71efc93ad489.allbb.pdb #8 
    2789 --- 
    2790 Chain | Description 
    2791 A B C D | No description available 
    2792  
    2793 Chain information for 00003.71efc93ad489.allbb.pdb #9 
    2794 --- 
    2795 Chain | Description 
    2796 A B C D | No description available 
    2797  
    2798 Chain information for 00004.71efc93ad489.allbb.pdb #10 
    2799 --- 
    2800 Chain | Description 
    2801 A B C D | No description available 
    2802  
    2803 Chain information for 00005.71efc93ad489.allbb.pdb #11 
    2804 --- 
    2805 Chain | Description 
    2806 A B C D | No description available 
    2807  
    2808 Chain information for 00006.71efc93ad489.allbb.pdb #12 
    2809 --- 
    2810 Chain | Description 
    2811 A B C D | No description available 
    2812  
    2813 Chain information for 00007.71efc93ad489.allbb.pdb #13 
    2814 --- 
    2815 Chain | Description 
    2816 A B C D | No description available 
    2817  
    2818 Chain information for 00008.71efc93ad489.allbb.pdb #14 
    2819 --- 
    2820 Chain | Description 
    2821 A B C D | No description available 
    2822  
    2823 Chain information for 00009.71efc93ad489.allbb.pdb #15 
    2824 --- 
    2825 Chain | Description 
    2826 A B C D | No description available 
    2827  
    2828 Chain information for 00010.71efc93ad489.allbb.pdb #16 
    2829 --- 
    2830 Chain | Description 
    2831 A B C D | No description available 
    2832  
    2833 
    2834 > select #7-16
    2835 
    2836 5600 atoms, 5560 bonds, 1120 residues, 10 models selected 
    2837 
    2838 > hide sel atoms
    2839 
    2840 > hide sel cartoons
    2841 
    2842 > select #7-16@CA
    2843 
    2844 1120 atoms, 1120 residues, 10 models selected 
    2845 
    2846 > show sel atoms
    2847 
    2848 > style sel ball
    2849 
    2850 Changed 1120 atom styles 
    2851 
    2852 > align #7-16/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    2853 
    2854 RMSD between 56 atom pairs is 0.010 angstroms 
    2855 [Repeated 9 time(s)]
    2856 
    2857 > hide #!16 models
    2858 
    2859 > hide #!8 models
    2860 
    2861 > hide #!9 models
    2862 
    2863 > hide #!10 models
    2864 
    2865 > hide #!11 models
    2866 
    2867 > hide #!12 models
    2868 
    2869 > hide #!13 models
    2870 
    2871 > hide #!14 models
    2872 
    2873 > hide #!15 models
    2874 
    2875 > show #!9 models
    2876 
    2877 > hide #!9 models
    2878 
    2879 > show #!11 models
    2880 
    2881 > hide #!11 models
    2882 
    2883 > hide #!7 models
    2884 
    2885 > show #!16 models
    2886 
    2887 > hide #!16 models
    2888 
    2889 > show #!7 models
    2890 
    2891 > close #7-16
    2892 
    2893 > open /Users/drornoy/Downloads/ee71ffb97b20/00001.ee71ffb97b20.allbb.pdb
    2894 > /Users/drornoy/Downloads/ee71ffb97b20/00002.ee71ffb97b20.allbb.pdb
    2895 > /Users/drornoy/Downloads/ee71ffb97b20/00003.ee71ffb97b20.allbb.pdb
    2896 > /Users/drornoy/Downloads/ee71ffb97b20/00004.ee71ffb97b20.allbb.pdb
    2897 > /Users/drornoy/Downloads/ee71ffb97b20/00005.ee71ffb97b20.allbb.pdb
    2898 > /Users/drornoy/Downloads/ee71ffb97b20/00006.ee71ffb97b20.allbb.pdb
    2899 > /Users/drornoy/Downloads/ee71ffb97b20/00007.ee71ffb97b20.allbb.pdb
    2900 > /Users/drornoy/Downloads/ee71ffb97b20/00008.ee71ffb97b20.allbb.pdb
    2901 > /Users/drornoy/Downloads/ee71ffb97b20/00009.ee71ffb97b20.allbb.pdb
    2902 > /Users/drornoy/Downloads/ee71ffb97b20/00010.ee71ffb97b20.allbb.pdb
    2903 > /Users/drornoy/Downloads/ee71ffb97b20/00011.ee71ffb97b20.allbb.pdb
    2904 > /Users/drornoy/Downloads/ee71ffb97b20/00012.ee71ffb97b20.allbb.pdb
    2905 > /Users/drornoy/Downloads/ee71ffb97b20/00013.ee71ffb97b20.allbb.pdb
    2906 > /Users/drornoy/Downloads/ee71ffb97b20/00014.ee71ffb97b20.allbb.pdb
    2907 > /Users/drornoy/Downloads/ee71ffb97b20/00015.ee71ffb97b20.allbb.pdb
    2908 > /Users/drornoy/Downloads/ee71ffb97b20/00016.ee71ffb97b20.allbb.pdb
    2909 > /Users/drornoy/Downloads/ee71ffb97b20/00017.ee71ffb97b20.allbb.pdb
    2910 > /Users/drornoy/Downloads/ee71ffb97b20/00018.ee71ffb97b20.allbb.pdb
    2911 > /Users/drornoy/Downloads/ee71ffb97b20/00019.ee71ffb97b20.allbb.pdb
    2912 > /Users/drornoy/Downloads/ee71ffb97b20/00020.ee71ffb97b20.allbb.pdb
    2913 > /Users/drornoy/Downloads/ee71ffb97b20/00021.ee71ffb97b20.allbb.pdb
    2914 > /Users/drornoy/Downloads/ee71ffb97b20/00022.ee71ffb97b20.allbb.pdb
    2915 > /Users/drornoy/Downloads/ee71ffb97b20/00023.ee71ffb97b20.allbb.pdb
    2916 > /Users/drornoy/Downloads/ee71ffb97b20/00024.ee71ffb97b20.allbb.pdb
    2917 > /Users/drornoy/Downloads/ee71ffb97b20/00025.ee71ffb97b20.allbb.pdb
    2918 
    2919 Summary of feedback from opening
    2920 /Users/drornoy/Downloads/ee71ffb97b20/00001.ee71ffb97b20.allbb.pdb 
    2921 --- 
    2922 warning | Ignored bad PDB record found on line 1 
    2923 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2924 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2925 &phi;<SUB>1</SUB> = [15.855, 119, 123, 0], ori = [1, 0, 0],
    2926 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2927 [0.229, 2.400, 0] 
    2928  
    2929 Summary of feedback from opening
    2930 /Users/drornoy/Downloads/ee71ffb97b20/00002.ee71ffb97b20.allbb.pdb 
    2931 --- 
    2932 warning | Ignored bad PDB record found on line 1 
    2933 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2934 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2935 &phi;<SUB>1</SUB> = [15.855, 119, 123, 0], ori = [1, 0, 0],
    2936 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2937 [0.229, 2.400, 1] 
    2938  
    2939 Summary of feedback from opening
    2940 /Users/drornoy/Downloads/ee71ffb97b20/00003.ee71ffb97b20.allbb.pdb 
    2941 --- 
    2942 warning | Ignored bad PDB record found on line 1 
    2943 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2944 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2945 &phi;<SUB>1</SUB> = [15.855, 119, 123, 0], ori = [1, 0, 0],
    2946 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2947 [0.229, 2.400, 2] 
    2948  
    2949 Summary of feedback from opening
    2950 /Users/drornoy/Downloads/ee71ffb97b20/00004.ee71ffb97b20.allbb.pdb 
    2951 --- 
    2952 warning | Ignored bad PDB record found on line 1 
    2953 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2954 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2955 &phi;<SUB>1</SUB> = [15.855, 119, 123, 0], ori = [1, 0, 0],
    2956 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2957 [0.229, 2.400, 3] 
    2958  
    2959 Summary of feedback from opening
    2960 /Users/drornoy/Downloads/ee71ffb97b20/00005.ee71ffb97b20.allbb.pdb 
    2961 --- 
    2962 warning | Ignored bad PDB record found on line 1 
    2963 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2964 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2965 &phi;<SUB>1</SUB> = [15.855, 119, 123, 0], ori = [1, 0, 0],
    2966 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2967 [0.229, 2.400, 4] 
    2968  
    2969 Summary of feedback from opening
    2970 /Users/drornoy/Downloads/ee71ffb97b20/00006.ee71ffb97b20.allbb.pdb 
    2971 --- 
    2972 warning | Ignored bad PDB record found on line 1 
    2973 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2974 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2975 &phi;<SUB>1</SUB> = [15.855, 119, 124.800, 12.750], ori = [1, 0, 0],
    2976 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2977 [0.229, 2.400, 0] 
    2978  
    2979 Summary of feedback from opening
    2980 /Users/drornoy/Downloads/ee71ffb97b20/00007.ee71ffb97b20.allbb.pdb 
    2981 --- 
    2982 warning | Ignored bad PDB record found on line 1 
    2983 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2984 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2985 &phi;<SUB>1</SUB> = [15.855, 119, 124.800, 12.750], ori = [1, 0, 0],
    2986 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2987 [0.229, 2.400, 1] 
    2988  
    2989 Summary of feedback from opening
    2990 /Users/drornoy/Downloads/ee71ffb97b20/00008.ee71ffb97b20.allbb.pdb 
    2991 --- 
    2992 warning | Ignored bad PDB record found on line 1 
    2993 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    2994 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    2995 &phi;<SUB>1</SUB> = [15.855, 119, 124.800, 12.750], ori = [1, 0, 0],
    2996 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    2997 [0.229, 2.400, 2] 
    2998  
    2999 Summary of feedback from opening
    3000 /Users/drornoy/Downloads/ee71ffb97b20/00009.ee71ffb97b20.allbb.pdb 
    3001 --- 
    3002 warning | Ignored bad PDB record found on line 1 
    3003 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3004 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3005 &phi;<SUB>1</SUB> = [15.855, 119, 124.800, 12.750], ori = [1, 0, 0],
    3006 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3007 [0.229, 2.400, 3] 
    3008  
    3009 Summary of feedback from opening
    3010 /Users/drornoy/Downloads/ee71ffb97b20/00010.ee71ffb97b20.allbb.pdb 
    3011 --- 
    3012 warning | Ignored bad PDB record found on line 1 
    3013 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3014 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3015 &phi;<SUB>1</SUB> = [15.855, 119, 124.800, 12.750], ori = [1, 0, 0],
    3016 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3017 [0.229, 2.400, 4] 
    3018  
    3019 Summary of feedback from opening
    3020 /Users/drornoy/Downloads/ee71ffb97b20/00011.ee71ffb97b20.allbb.pdb 
    3021 --- 
    3022 warning | Ignored bad PDB record found on line 1 
    3023 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3024 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3025 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 25.500], ori = [1, 0, 0],
    3026 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3027 [0.229, 2.400, 0] 
    3028  
    3029 Summary of feedback from opening
    3030 /Users/drornoy/Downloads/ee71ffb97b20/00012.ee71ffb97b20.allbb.pdb 
    3031 --- 
    3032 warning | Ignored bad PDB record found on line 1 
    3033 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3034 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3035 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 25.500], ori = [1, 0, 0],
    3036 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3037 [0.229, 2.400, 1] 
    3038  
    3039 Summary of feedback from opening
    3040 /Users/drornoy/Downloads/ee71ffb97b20/00013.ee71ffb97b20.allbb.pdb 
    3041 --- 
    3042 warning | Ignored bad PDB record found on line 1 
    3043 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3044 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3045 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 25.500], ori = [1, 0, 0],
    3046 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3047 [0.229, 2.400, 2] 
    3048  
    3049 Summary of feedback from opening
    3050 /Users/drornoy/Downloads/ee71ffb97b20/00014.ee71ffb97b20.allbb.pdb 
    3051 --- 
    3052 warning | Ignored bad PDB record found on line 1 
    3053 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3054 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3055 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 25.500], ori = [1, 0, 0],
    3056 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3057 [0.229, 2.400, 3] 
    3058  
    3059 Summary of feedback from opening
    3060 /Users/drornoy/Downloads/ee71ffb97b20/00015.ee71ffb97b20.allbb.pdb 
    3061 --- 
    3062 warning | Ignored bad PDB record found on line 1 
    3063 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3064 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3065 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 25.500], ori = [1, 0, 0],
    3066 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3067 [0.229, 2.400, 4] 
    3068  
    3069 Summary of feedback from opening
    3070 /Users/drornoy/Downloads/ee71ffb97b20/00016.ee71ffb97b20.allbb.pdb 
    3071 --- 
    3072 warning | Ignored bad PDB record found on line 1 
    3073 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3074 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3075 &phi;<SUB>1</SUB> = [15.855, 119, 128.400, 38.250], ori = [1, 0, 0],
    3076 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3077 [0.229, 2.400, 0] 
    3078  
    3079 Summary of feedback from opening
    3080 /Users/drornoy/Downloads/ee71ffb97b20/00017.ee71ffb97b20.allbb.pdb 
    3081 --- 
    3082 warning | Ignored bad PDB record found on line 1 
    3083 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3084 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3085 &phi;<SUB>1</SUB> = [15.855, 119, 128.400, 38.250], ori = [1, 0, 0],
    3086 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3087 [0.229, 2.400, 1] 
    3088  
    3089 Summary of feedback from opening
    3090 /Users/drornoy/Downloads/ee71ffb97b20/00018.ee71ffb97b20.allbb.pdb 
    3091 --- 
    3092 warning | Ignored bad PDB record found on line 1 
    3093 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3094 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3095 &phi;<SUB>1</SUB> = [15.855, 119, 128.400, 38.250], ori = [1, 0, 0],
    3096 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3097 [0.229, 2.400, 2] 
    3098  
    3099 Summary of feedback from opening
    3100 /Users/drornoy/Downloads/ee71ffb97b20/00019.ee71ffb97b20.allbb.pdb 
    3101 --- 
    3102 warning | Ignored bad PDB record found on line 1 
    3103 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3104 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3105 &phi;<SUB>1</SUB> = [15.855, 119, 128.400, 38.250], ori = [1, 0, 0],
    3106 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3107 [0.229, 2.400, 3] 
    3108  
    3109 Summary of feedback from opening
    3110 /Users/drornoy/Downloads/ee71ffb97b20/00020.ee71ffb97b20.allbb.pdb 
    3111 --- 
    3112 warning | Ignored bad PDB record found on line 1 
    3113 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3114 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3115 &phi;<SUB>1</SUB> = [15.855, 119, 128.400, 38.250], ori = [1, 0, 0],
    3116 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3117 [0.229, 2.400, 4] 
    3118  
    3119 Summary of feedback from opening
    3120 /Users/drornoy/Downloads/ee71ffb97b20/00021.ee71ffb97b20.allbb.pdb 
    3121 --- 
    3122 warning | Ignored bad PDB record found on line 1 
    3123 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3124 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3125 &phi;<SUB>1</SUB> = [15.855, 119, 130.200, 51], ori = [1, 0, 0],
    3126 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3127 [0.229, 2.400, 0] 
    3128  
    3129 Summary of feedback from opening
    3130 /Users/drornoy/Downloads/ee71ffb97b20/00022.ee71ffb97b20.allbb.pdb 
    3131 --- 
    3132 warning | Ignored bad PDB record found on line 1 
    3133 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3134 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3135 &phi;<SUB>1</SUB> = [15.855, 119, 130.200, 51], ori = [1, 0, 0],
    3136 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3137 [0.229, 2.400, 1] 
    3138  
    3139 Summary of feedback from opening
    3140 /Users/drornoy/Downloads/ee71ffb97b20/00023.ee71ffb97b20.allbb.pdb 
    3141 --- 
    3142 warning | Ignored bad PDB record found on line 1 
    3143 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3144 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3145 &phi;<SUB>1</SUB> = [15.855, 119, 130.200, 51], ori = [1, 0, 0],
    3146 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3147 [0.229, 2.400, 2] 
    3148  
    3149 Summary of feedback from opening
    3150 /Users/drornoy/Downloads/ee71ffb97b20/00024.ee71ffb97b20.allbb.pdb 
    3151 --- 
    3152 warning | Ignored bad PDB record found on line 1 
    3153 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3154 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3155 &phi;<SUB>1</SUB> = [15.855, 119, 130.200, 51], ori = [1, 0, 0],
    3156 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3157 [0.229, 2.400, 3] 
    3158  
    3159 Summary of feedback from opening
    3160 /Users/drornoy/Downloads/ee71ffb97b20/00025.ee71ffb97b20.allbb.pdb 
    3161 --- 
    3162 warning | Ignored bad PDB record found on line 1 
    3163 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3164 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3165 &phi;<SUB>1</SUB> = [15.855, 119, 130.200, 51], ori = [1, 0, 0],
    3166 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3167 [0.229, 2.400, 4] 
    3168  
    3169 Chain information for 00001.ee71ffb97b20.allbb.pdb #7 
    3170 --- 
    3171 Chain | Description 
    3172 A B C D | No description available 
    3173  
    3174 Chain information for 00002.ee71ffb97b20.allbb.pdb #8 
    3175 --- 
    3176 Chain | Description 
    3177 A B C D | No description available 
    3178  
    3179 Chain information for 00003.ee71ffb97b20.allbb.pdb #9 
    3180 --- 
    3181 Chain | Description 
    3182 A B C D | No description available 
    3183  
    3184 Chain information for 00004.ee71ffb97b20.allbb.pdb #10 
    3185 --- 
    3186 Chain | Description 
    3187 A B C D | No description available 
    3188  
    3189 Chain information for 00005.ee71ffb97b20.allbb.pdb #11 
    3190 --- 
    3191 Chain | Description 
    3192 A B C D | No description available 
    3193  
    3194 Chain information for 00006.ee71ffb97b20.allbb.pdb #12 
    3195 --- 
    3196 Chain | Description 
    3197 A B C D | No description available 
    3198  
    3199 Chain information for 00007.ee71ffb97b20.allbb.pdb #13 
    3200 --- 
    3201 Chain | Description 
    3202 A B C D | No description available 
    3203  
    3204 Chain information for 00008.ee71ffb97b20.allbb.pdb #14 
    3205 --- 
    3206 Chain | Description 
    3207 A B C D | No description available 
    3208  
    3209 Chain information for 00009.ee71ffb97b20.allbb.pdb #15 
    3210 --- 
    3211 Chain | Description 
    3212 A B C D | No description available 
    3213  
    3214 Chain information for 00010.ee71ffb97b20.allbb.pdb #16 
    3215 --- 
    3216 Chain | Description 
    3217 A B C D | No description available 
    3218  
    3219 Chain information for 00011.ee71ffb97b20.allbb.pdb #17 
    3220 --- 
    3221 Chain | Description 
    3222 A B C D | No description available 
    3223  
    3224 Chain information for 00012.ee71ffb97b20.allbb.pdb #18 
    3225 --- 
    3226 Chain | Description 
    3227 A B C D | No description available 
    3228  
    3229 Chain information for 00013.ee71ffb97b20.allbb.pdb #19 
    3230 --- 
    3231 Chain | Description 
    3232 A B C D | No description available 
    3233  
    3234 Chain information for 00014.ee71ffb97b20.allbb.pdb #20 
    3235 --- 
    3236 Chain | Description 
    3237 A B C D | No description available 
    3238  
    3239 Chain information for 00015.ee71ffb97b20.allbb.pdb #21 
    3240 --- 
    3241 Chain | Description 
    3242 A B C D | No description available 
    3243  
    3244 Chain information for 00016.ee71ffb97b20.allbb.pdb #22 
    3245 --- 
    3246 Chain | Description 
    3247 A B C D | No description available 
    3248  
    3249 Chain information for 00017.ee71ffb97b20.allbb.pdb #23 
    3250 --- 
    3251 Chain | Description 
    3252 A B C D | No description available 
    3253  
    3254 Chain information for 00018.ee71ffb97b20.allbb.pdb #24 
    3255 --- 
    3256 Chain | Description 
    3257 A B C D | No description available 
    3258  
    3259 Chain information for 00019.ee71ffb97b20.allbb.pdb #25 
    3260 --- 
    3261 Chain | Description 
    3262 A B C D | No description available 
    3263  
    3264 Chain information for 00020.ee71ffb97b20.allbb.pdb #26 
    3265 --- 
    3266 Chain | Description 
    3267 A B C D | No description available 
    3268  
    3269 Chain information for 00021.ee71ffb97b20.allbb.pdb #27 
    3270 --- 
    3271 Chain | Description 
    3272 A B C D | No description available 
    3273  
    3274 Chain information for 00022.ee71ffb97b20.allbb.pdb #28 
    3275 --- 
    3276 Chain | Description 
    3277 A B C D | No description available 
    3278  
    3279 Chain information for 00023.ee71ffb97b20.allbb.pdb #29 
    3280 --- 
    3281 Chain | Description 
    3282 A B C D | No description available 
    3283  
    3284 Chain information for 00024.ee71ffb97b20.allbb.pdb #30 
    3285 --- 
    3286 Chain | Description 
    3287 A B C D | No description available 
    3288  
    3289 Chain information for 00025.ee71ffb97b20.allbb.pdb #31 
    3290 --- 
    3291 Chain | Description 
    3292 A B C D | No description available 
    3293  
    3294 
    3295 > align #7-25/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    3296 
    3297 RMSD between 56 atom pairs is 0.010 angstroms 
    3298 [Repeated 18 time(s)]
    3299 
    3300 > select #7-25
    3301 
    3302 10640 atoms, 10564 bonds, 2128 residues, 19 models selected 
    3303 
    3304 > hide sel atoms
    3305 
    3306 > hide sel cartoons
    3307 
    3308 > select #7-25@CA
    3309 
    3310 2128 atoms, 2128 residues, 19 models selected 
    3311 
    3312 > show sel atoms
    3313 
    3314 > style sel ball
    3315 
    3316 Changed 2128 atom styles 
    3317 
    3318 > close #26-31#7-25
    3319 
    3320 > open /Users/drornoy/Downloads/00001.54e4c71013b6.allbb.pdb
    3321 
    3322 Summary of feedback from opening
    3323 /Users/drornoy/Downloads/00001.54e4c71013b6.allbb.pdb 
    3324 --- 
    3325 warning | Ignored bad PDB record found on line 1 
    3326 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3327 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3328 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
    3329 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3330 [0.229, 2.400, 2.650] 
    3331  
    3332 Chain information for 00001.54e4c71013b6.allbb.pdb #7 
    3333 --- 
    3334 Chain | Description 
    3335 A B C D | No description available 
    3336  
    3337 
    3338 > close #7
    3339 
    3340 > open "/Users/drornoy/Desktop/LH2 helices/CCCP sim LH2 antiparallel 4HB
    3341 > v2.pdb"
    3342 
    3343 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP sim
    3344 LH2 antiparallel 4HB v2.pdb 
    3345 --- 
    3346 warning | Ignored bad PDB record found on line 1 
    3347 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3348 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3349 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    3350 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3351 [0.229, 1.861, 2.650] 
    3352  
    3353 Chain information for CCCP sim LH2 antiparallel 4HB v2.pdb #7 
    3354 --- 
    3355 Chain | Description 
    3356 A B C D | No description available 
    3357  
    3358 
    3359 > select #7
    3360 
    3361 560 atoms, 556 bonds, 112 residues, 1 model selected 
    3362 
    3363 > hide sel atoms
    3364 
    3365 > hide sel cartoons
    3366 
    3367 > select #7@CA
    3368 
    3369 112 atoms, 112 residues, 1 model selected 
    3370 
    3371 > align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    3372 
    3373 RMSD between 56 atom pairs is 0.000 angstroms 
    3374 
    3375 > select #7@CA
    3376 
    3377 112 atoms, 112 residues, 1 model selected 
    3378 
    3379 > show sel atoms
    3380 
    3381 > style sel ball
    3382 
    3383 Changed 112 atom styles 
    3384 
    3385 > open /Users/drornoy/Downloads/3edcc30bb4f8/00001.3edcc30bb4f8.allbb.pdb
    3386 > /Users/drornoy/Downloads/3edcc30bb4f8/00002.3edcc30bb4f8.allbb.pdb
    3387 > /Users/drornoy/Downloads/3edcc30bb4f8/00003.3edcc30bb4f8.allbb.pdb
    3388 > /Users/drornoy/Downloads/3edcc30bb4f8/00004.3edcc30bb4f8.allbb.pdb
    3389 > /Users/drornoy/Downloads/3edcc30bb4f8/00005.3edcc30bb4f8.allbb.pdb
    3390 
    3391 Summary of feedback from opening
    3392 /Users/drornoy/Downloads/3edcc30bb4f8/00001.3edcc30bb4f8.allbb.pdb 
    3393 --- 
    3394 warning | Ignored bad PDB record found on line 1 
    3395 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3396 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3397 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
    3398 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3399 [0.229, 2.400, 2.650] 
    3400  
    3401 Summary of feedback from opening
    3402 /Users/drornoy/Downloads/3edcc30bb4f8/00002.3edcc30bb4f8.allbb.pdb 
    3403 --- 
    3404 warning | Ignored bad PDB record found on line 1 
    3405 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3406 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3407 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
    3408 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3409 [0.229, 2.400, 2.900] 
    3410  
    3411 Summary of feedback from opening
    3412 /Users/drornoy/Downloads/3edcc30bb4f8/00003.3edcc30bb4f8.allbb.pdb 
    3413 --- 
    3414 warning | Ignored bad PDB record found on line 1 
    3415 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3416 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3417 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
    3418 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3419 [0.229, 2.400, 3.150] 
    3420  
    3421 Summary of feedback from opening
    3422 /Users/drornoy/Downloads/3edcc30bb4f8/00004.3edcc30bb4f8.allbb.pdb 
    3423 --- 
    3424 warning | Ignored bad PDB record found on line 1 
    3425 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3426 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3427 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
    3428 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3429 [0.229, 2.400, 3.400] 
    3430  
    3431 Summary of feedback from opening
    3432 /Users/drornoy/Downloads/3edcc30bb4f8/00005.3edcc30bb4f8.allbb.pdb 
    3433 --- 
    3434 warning | Ignored bad PDB record found on line 1 
    3435 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3436 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3437 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.910], ori = [1, 0, 0],
    3438 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3439 [0.229, 2.400, 3.650] 
    3440  
    3441 Chain information for 00001.3edcc30bb4f8.allbb.pdb #8 
    3442 --- 
    3443 Chain | Description 
    3444 A B C D | No description available 
    3445  
    3446 Chain information for 00002.3edcc30bb4f8.allbb.pdb #9 
    3447 --- 
    3448 Chain | Description 
    3449 A B C D | No description available 
    3450  
    3451 Chain information for 00003.3edcc30bb4f8.allbb.pdb #10 
    3452 --- 
    3453 Chain | Description 
    3454 A B C D | No description available 
    3455  
    3456 Chain information for 00004.3edcc30bb4f8.allbb.pdb #11 
    3457 --- 
    3458 Chain | Description 
    3459 A B C D | No description available 
    3460  
    3461 Chain information for 00005.3edcc30bb4f8.allbb.pdb #12 
    3462 --- 
    3463 Chain | Description 
    3464 A B C D | No description available 
    3465  
    3466 
    3467 > align #8-12/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    3468 
    3469 RMSD between 56 atom pairs is 0.010 angstroms 
    3470 [Repeated 4 time(s)]
    3471 
    3472 > select #7-12
    3473 
    3474 3360 atoms, 3336 bonds, 108 pseudobonds, 672 residues, 7 models selected 
    3475 
    3476 > hide sel atoms
    3477 
    3478 > hide sel cartoons
    3479 
    3480 > select #7-12@CA
    3481 
    3482 672 atoms, 672 residues, 6 models selected 
    3483 
    3484 > show sel atoms
    3485 
    3486 > style sel ball
    3487 
    3488 Changed 672 atom styles 
    3489 
    3490 > close #8-12
    3491 
    3492 > open /Users/drornoy/Downloads/6e2f1d2911de/00001.6e2f1d2911de.allbb.pdb
    3493 > /Users/drornoy/Downloads/6e2f1d2911de/00002.6e2f1d2911de.allbb.pdb
    3494 > /Users/drornoy/Downloads/6e2f1d2911de/00003.6e2f1d2911de.allbb.pdb
    3495 > /Users/drornoy/Downloads/6e2f1d2911de/00004.6e2f1d2911de.allbb.pdb
    3496 > /Users/drornoy/Downloads/6e2f1d2911de/00005.6e2f1d2911de.allbb.pdb
    3497 
    3498 Summary of feedback from opening
    3499 /Users/drornoy/Downloads/6e2f1d2911de/00001.6e2f1d2911de.allbb.pdb 
    3500 --- 
    3501 warning | Ignored bad PDB record found on line 1 
    3502 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3503 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3504 &phi;<SUB>1</SUB> = [15.855, 119, 123, -12.910], ori = [1, 0, 0],
    3505 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3506 [0.229, 2.400, 2.650] 
    3507  
    3508 Summary of feedback from opening
    3509 /Users/drornoy/Downloads/6e2f1d2911de/00002.6e2f1d2911de.allbb.pdb 
    3510 --- 
    3511 warning | Ignored bad PDB record found on line 1 
    3512 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3513 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3514 &phi;<SUB>1</SUB> = [15.855, 119, 124.800, -6.455], ori = [1, 0, 0],
    3515 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3516 [0.229, 2.400, 2.650] 
    3517  
    3518 Summary of feedback from opening
    3519 /Users/drornoy/Downloads/6e2f1d2911de/00003.6e2f1d2911de.allbb.pdb 
    3520 --- 
    3521 warning | Ignored bad PDB record found on line 1 
    3522 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3523 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3524 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 0], ori = [1, 0, 0],
    3525 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3526 [0.229, 2.400, 2.650] 
    3527  
    3528 Summary of feedback from opening
    3529 /Users/drornoy/Downloads/6e2f1d2911de/00004.6e2f1d2911de.allbb.pdb 
    3530 --- 
    3531 warning | Ignored bad PDB record found on line 1 
    3532 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3533 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3534 &phi;<SUB>1</SUB> = [15.855, 119, 128.400, 6.455], ori = [1, 0, 0],
    3535 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3536 [0.229, 2.400, 2.650] 
    3537  
    3538 Summary of feedback from opening
    3539 /Users/drornoy/Downloads/6e2f1d2911de/00005.6e2f1d2911de.allbb.pdb 
    3540 --- 
    3541 warning | Ignored bad PDB record found on line 1 
    3542 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3543 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3544 &phi;<SUB>1</SUB> = [15.855, 119, 130.200, 12.910], ori = [1, 0, 0],
    3545 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3546 [0.229, 2.400, 2.650] 
    3547  
    3548 Chain information for 00001.6e2f1d2911de.allbb.pdb #8 
    3549 --- 
    3550 Chain | Description 
    3551 A B C D | No description available 
    3552  
    3553 Chain information for 00002.6e2f1d2911de.allbb.pdb #9 
    3554 --- 
    3555 Chain | Description 
    3556 A B C D | No description available 
    3557  
    3558 Chain information for 00003.6e2f1d2911de.allbb.pdb #10 
    3559 --- 
    3560 Chain | Description 
    3561 A B C D | No description available 
    3562  
    3563 Chain information for 00004.6e2f1d2911de.allbb.pdb #11 
    3564 --- 
    3565 Chain | Description 
    3566 A B C D | No description available 
    3567  
    3568 Chain information for 00005.6e2f1d2911de.allbb.pdb #12 
    3569 --- 
    3570 Chain | Description 
    3571 A B C D | No description available 
    3572  
    3573 
    3574 > select #7-12
    3575 
    3576 3360 atoms, 3336 bonds, 108 pseudobonds, 672 residues, 7 models selected 
    3577 
    3578 > hide sel atoms
    3579 
    3580 > hide sel cartoons
    3581 
    3582 > select #7-12@CA
    3583 
    3584 672 atoms, 672 residues, 6 models selected 
    3585 
    3586 > show sel atoms
    3587 
    3588 > style sel ball
    3589 
    3590 Changed 672 atom styles 
    3591 
    3592 > style sel ball
    3593 
    3594 Changed 672 atom styles 
    3595 
    3596 > align #8-12/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    3597 
    3598 RMSD between 56 atom pairs is 0.010 angstroms 
    3599 [Repeated 4 time(s)]
    3600 
    3601 > hide #!9 models
    3602 
    3603 > hide #!10 models
    3604 
    3605 > hide #!11 models
    3606 
    3607 > hide #!12 models
    3608 
    3609 > show #!12 models
    3610 
    3611 > hide #!12 models
    3612 
    3613 > show #!11 models
    3614 
    3615 > show #!10 models
    3616 
    3617 > show #!9 models
    3618 
    3619 > hide #!8 models
    3620 
    3621 > show #!8 models
    3622 
    3623 > hide #!8 models
    3624 
    3625 > hide #!11 models
    3626 
    3627 > hide #!10 models
    3628 
    3629 > close #8-12
    3630 
    3631 > open /Users/drornoy/Downloads/fb5ff5833da3/00002.fb5ff5833da3.allbb.pdb
    3632 > /Users/drornoy/Downloads/fb5ff5833da3/00001.fb5ff5833da3.allbb.pdb
    3633 > /Users/drornoy/Downloads/fb5ff5833da3/00003.fb5ff5833da3.allbb.pdb
    3634 > /Users/drornoy/Downloads/fb5ff5833da3/00004.fb5ff5833da3.allbb.pdb
    3635 > /Users/drornoy/Downloads/fb5ff5833da3/00005.fb5ff5833da3.allbb.pdb
    3636 
    3637 Summary of feedback from opening
    3638 /Users/drornoy/Downloads/fb5ff5833da3/00002.fb5ff5833da3.allbb.pdb 
    3639 --- 
    3640 warning | Ignored bad PDB record found on line 1 
    3641 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3642 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3643 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
    3644 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3645 [0.229, 2.400, 2.900] 
    3646  
    3647 Summary of feedback from opening
    3648 /Users/drornoy/Downloads/fb5ff5833da3/00001.fb5ff5833da3.allbb.pdb 
    3649 --- 
    3650 warning | Ignored bad PDB record found on line 1 
    3651 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3652 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3653 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
    3654 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3655 [0.229, 2.400, 2.650] 
    3656  
    3657 Summary of feedback from opening
    3658 /Users/drornoy/Downloads/fb5ff5833da3/00003.fb5ff5833da3.allbb.pdb 
    3659 --- 
    3660 warning | Ignored bad PDB record found on line 1 
    3661 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3662 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3663 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
    3664 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3665 [0.229, 2.400, 3.150] 
    3666  
    3667 Summary of feedback from opening
    3668 /Users/drornoy/Downloads/fb5ff5833da3/00004.fb5ff5833da3.allbb.pdb 
    3669 --- 
    3670 warning | Ignored bad PDB record found on line 1 
    3671 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3672 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3673 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
    3674 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3675 [0.229, 2.400, 3.400] 
    3676  
    3677 Summary of feedback from opening
    3678 /Users/drornoy/Downloads/fb5ff5833da3/00005.fb5ff5833da3.allbb.pdb 
    3679 --- 
    3680 warning | Ignored bad PDB record found on line 1 
    3681 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3682 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3683 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
    3684 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3685 [0.229, 2.400, 3.650] 
    3686  
    3687 Chain information for 00002.fb5ff5833da3.allbb.pdb #8 
    3688 --- 
    3689 Chain | Description 
    3690 A B C D | No description available 
    3691  
    3692 Chain information for 00001.fb5ff5833da3.allbb.pdb #9 
    3693 --- 
    3694 Chain | Description 
    3695 A B C D | No description available 
    3696  
    3697 Chain information for 00003.fb5ff5833da3.allbb.pdb #10 
    3698 --- 
    3699 Chain | Description 
    3700 A B C D | No description available 
    3701  
    3702 Chain information for 00004.fb5ff5833da3.allbb.pdb #11 
    3703 --- 
    3704 Chain | Description 
    3705 A B C D | No description available 
    3706  
    3707 Chain information for 00005.fb5ff5833da3.allbb.pdb #12 
    3708 --- 
    3709 Chain | Description 
    3710 A B C D | No description available 
    3711  
    3712 
    3713 > align #8-12/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    3714 
    3715 RMSD between 56 atom pairs is 0.010 angstroms 
    3716 [Repeated 4 time(s)]
    3717 
    3718 > close #8-12
    3719 
    3720 > open /Users/drornoy/Downloads/be2304659388/00002.be2304659388.allbb.pdb
    3721 > /Users/drornoy/Downloads/be2304659388/00001.be2304659388.allbb.pdb
    3722 > /Users/drornoy/Downloads/be2304659388/00003.be2304659388.allbb.pdb
    3723 > /Users/drornoy/Downloads/be2304659388/00004.be2304659388.allbb.pdb
    3724 > /Users/drornoy/Downloads/be2304659388/00005.be2304659388.allbb.pdb
    3725 
    3726 Summary of feedback from opening
    3727 /Users/drornoy/Downloads/be2304659388/00002.be2304659388.allbb.pdb 
    3728 --- 
    3729 warning | Ignored bad PDB record found on line 1 
    3730 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3731 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3732 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
    3733 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3734 [0.229, 2.400, 4.500] 
    3735  
    3736 Summary of feedback from opening
    3737 /Users/drornoy/Downloads/be2304659388/00001.be2304659388.allbb.pdb 
    3738 --- 
    3739 warning | Ignored bad PDB record found on line 1 
    3740 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3741 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3742 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
    3743 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3744 [0.229, 2.400, 4] 
    3745  
    3746 Summary of feedback from opening
    3747 /Users/drornoy/Downloads/be2304659388/00003.be2304659388.allbb.pdb 
    3748 --- 
    3749 warning | Ignored bad PDB record found on line 1 
    3750 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3751 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3752 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
    3753 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3754 [0.229, 2.400, 5] 
    3755  
    3756 Summary of feedback from opening
    3757 /Users/drornoy/Downloads/be2304659388/00004.be2304659388.allbb.pdb 
    3758 --- 
    3759 warning | Ignored bad PDB record found on line 1 
    3760 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3761 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3762 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
    3763 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3764 [0.229, 2.400, 5.500] 
    3765  
    3766 Summary of feedback from opening
    3767 /Users/drornoy/Downloads/be2304659388/00005.be2304659388.allbb.pdb 
    3768 --- 
    3769 warning | Ignored bad PDB record found on line 1 
    3770 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3771 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3772 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, -6.500], ori = [1, 0, 0],
    3773 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3774 [0.229, 2.400, 6] 
    3775  
    3776 Chain information for 00002.be2304659388.allbb.pdb #8 
    3777 --- 
    3778 Chain | Description 
    3779 A B C D | No description available 
    3780  
    3781 Chain information for 00001.be2304659388.allbb.pdb #9 
    3782 --- 
    3783 Chain | Description 
    3784 A B C D | No description available 
    3785  
    3786 Chain information for 00003.be2304659388.allbb.pdb #10 
    3787 --- 
    3788 Chain | Description 
    3789 A B C D | No description available 
    3790  
    3791 Chain information for 00004.be2304659388.allbb.pdb #11 
    3792 --- 
    3793 Chain | Description 
    3794 A B C D | No description available 
    3795  
    3796 Chain information for 00005.be2304659388.allbb.pdb #12 
    3797 --- 
    3798 Chain | Description 
    3799 A B C D | No description available 
    3800  
    3801 
    3802 > align #8-12/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    3803 
    3804 RMSD between 56 atom pairs is 0.010 angstroms 
    3805 [Repeated 4 time(s)]
    3806 
    3807 > select #7-12
    3808 
    3809 3360 atoms, 3336 bonds, 108 pseudobonds, 672 residues, 7 models selected 
    3810 
    3811 > hide sel atoms
    3812 
    3813 > hide sel cartoons
    3814 
    3815 > select #7-12@CA
    3816 
    3817 672 atoms, 672 residues, 6 models selected 
    3818 
    3819 > show sel atoms
    3820 
    3821 > style sel ball
    3822 
    3823 Changed 672 atom styles 
    3824 
    3825 > open /Users/drornoy/Downloads/00001.6da48813474e.allbb.pdb
    3826 
    3827 Summary of feedback from opening
    3828 /Users/drornoy/Downloads/00001.6da48813474e.allbb.pdb 
    3829 --- 
    3830 warning | Ignored bad PDB record found on line 1 
    3831 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3832 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3833 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 0], ori = [1, 0, 0],
    3834 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3835 [0.229, 2.400, 4] 
    3836  
    3837 Chain information for 00001.6da48813474e.allbb.pdb #13 
    3838 --- 
    3839 Chain | Description 
    3840 A B C D | No description available 
    3841  
    3842 
    3843 > align #8-13/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    3844 
    3845 RMSD between 56 atom pairs is 0.010 angstroms 
    3846 [Repeated 5 time(s)]
    3847 
    3848 > select #7-13
    3849 
    3850 3920 atoms, 3892 bonds, 648 pseudobonds, 784 residues, 13 models selected 
    3851 
    3852 > hide sel atoms
    3853 
    3854 > hide sel cartoons
    3855 
    3856 > select #7-13@CA
    3857 
    3858 784 atoms, 784 residues, 7 models selected 
    3859 
    3860 > show sel atoms
    3861 
    3862 > style sel ball
    3863 
    3864 Changed 784 atom styles 
    3865 
    3866 > hide #!10 models
    3867 
    3868 > hide #!11 models
    3869 
    3870 > hide #!12 models
    3871 
    3872 > hide #!8 models
    3873 
    3874 > open /Users/drornoy/Downloads/00001.357aafb627c9.allbb.pdb
    3875 
    3876 Summary of feedback from opening
    3877 /Users/drornoy/Downloads/00001.357aafb627c9.allbb.pdb 
    3878 --- 
    3879 warning | Ignored bad PDB record found on line 1 
    3880 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    3881 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    3882 &phi;<SUB>1</SUB> = [15.855, 119, 126.600, 12.190], ori = [1, 0, 0],
    3883 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    3884 [0.229, 2.400, 4] 
    3885  
    3886 Chain information for 00001.357aafb627c9.allbb.pdb #14 
    3887 --- 
    3888 Chain | Description 
    3889 A B C D | No description available 
    3890  
    3891 
    3892 > align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    3893 
    3894 RMSD between 56 atom pairs is 0.010 angstroms 
    3895 [Repeated 6 time(s)]
    3896 
    3897 > select #7-14
    3898 
    3899 4480 atoms, 4448 bonds, 756 pseudobonds, 896 residues, 15 models selected 
    3900 
    3901 > hide sel & #14#!7,9,13 atoms
    3902 
    3903 > hide sel & #7,9,13-14 cartoons
    3904 
    3905 > select #7-14@CA
    3906 
    3907 896 atoms, 432 pseudobonds, 896 residues, 12 models selected 
    3908 
    3909 > show sel & #7,9,13-14 atoms
    3910 
    3911 > style sel & #!7,9,13-14 ball
    3912 
    3913 Changed 448 atom styles 
    3914 
    3915 > close #8-13
    3916 
    3917 > close #14
    3918 
    3919 > save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
    3920 > with CCCP.cxs"
    3921 
    3922 > hide #!3 models
    3923 
    3924 > show #!1 models
    3925 
    3926 > select #1/A-B/J-K@CA
    3927 
    3928 2590 atoms, 2402 bonds, 36 pseudobonds, 468 residues, 4 models selected 
    3929 
    3930 > select #1/A-B/J-K &protein
    3931 
    3932 2900 atoms, 2976 bonds, 388 residues, 2 models selected 
    3933 
    3934 > hide sel cartoons
    3935 
    3936 > select #1/A-B@CA/J-K@CA
    3937 
    3938 392 atoms, 392 residues, 2 models selected 
    3939 
    3940 > show sel atoms
    3941 
    3942 > hide sel atoms
    3943 
    3944 > select #1/A-B:11-38@CA/J-K:20-47@CA
    3945 
    3946 224 atoms, 224 residues, 2 models selected 
    3947 
    3948 > show sel atoms
    3949 
    3950 > style sel ball
    3951 
    3952 Changed 224 atom styles 
    3953 
    3954 > select #1/A-B:31@CA/J-K:40 &backbone
    3955 
    3956 20 atoms, 12 bonds, 8 residues, 2 models selected 
    3957 
    3958 > select #1/A-B:31/J-K:40 &backbone
    3959 
    3960 32 atoms, 24 bonds, 8 residues, 2 models selected 
    3961 
    3962 > hide sel atoms
    3963 
    3964 > select #1/A-B:31@CA/J-K:40@CA
    3965 
    3966 8 atoms, 8 residues, 2 models selected 
    3967 
    3968 > show sel atoms
    3969 
    3970 > save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
    3971 > with CCCP.cxs"
    3972 
    3973 > hide #!7 models
    3974 
    3975 > show #!2 models
    3976 
    3977 > show #!3 models
    3978 
    3979 > hide #!3 models
    3980 
    3981 > show #!3 models
    3982 
    3983 > hide #!3 models
    3984 
    3985 > show #!4 models
    3986 
    3987 > hide #!4 models
    3988 
    3989 > show #!5 models
    3990 
    3991 > hide #!5 models
    3992 
    3993 > show #!4 models
    3994 
    3995 > align #4/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    3996 
    3997 RMSD between 56 atom pairs is 0.000 angstroms 
    3998 
    3999 > hide #!4 models
    4000 
    4001 > hide #!2 models
    4002 
    4003 > show #!4 models
    4004 
    4005 > select #1/A
    4006 
    4007 1218 atoms, 1216 bonds, 72 pseudobonds, 142 residues, 6 models selected 
    4008 
    4009 > ui tool show "Color Actions"
    4010 
    4011 > color sel sky blue
    4012 
    4013 > color sel byhetero
    4014 
    4015 > select #1/B
    4016 
    4017 1180 atoms, 1186 bonds, 72 pseudobonds, 134 residues, 6 models selected 
    4018 
    4019 > color sel light steel blue
    4020 
    4021 > select #1/J
    4022 
    4023 926 atoms, 924 bonds, 66 pseudobonds, 124 residues, 6 models selected 
    4024 
    4025 > color sel light salmon
    4026 
    4027 > color sel bychain
    4028 
    4029 [Repeated 1 time(s)]
    4030 
    4031 > color sel byhetero
    4032 
    4033 > color sel light salmon
    4034 
    4035 > color sel byhetero
    4036 
    4037 > select #1/K
    4038 
    4039 934 atoms, 924 bonds, 66 pseudobonds, 132 residues, 6 models selected 
    4040 
    4041 > color sel coral
    4042 
    4043 > color sel salmon
    4044 
    4045 > color sel dark khaki
    4046 
    4047 > color sel dark salmon
    4048 
    4049 > color sel peru
    4050 
    4051 > color sel light salmon
    4052 
    4053 > color sel dark goldenrod
    4054 
    4055 > color sel yellow green
    4056 
    4057 > color sel sandy brown
    4058 
    4059 > color sel byhetero
    4060 
    4061 > show #!5 models
    4062 
    4063 > hide #!4 models
    4064 
    4065 > color #5 #73fa79ff
    4066 
    4067 > color #5 #d4fb79ff
    4068 
    4069 > color #5 #00f900ff
    4070 
    4071 > select #5
    4072 
    4073 560 atoms, 556 bonds, 108 pseudobonds, 112 residues, 2 models selected 
    4074 
    4075 > color sel byhetero
    4076 
    4077 > show #!7 models
    4078 
    4079 > hide #!7 models
    4080 
    4081 > close #7
    4082 
    4083 > open /Users/drornoy/Downloads/00001.7c485140197c.allbb.pdb
    4084 
    4085 Summary of feedback from opening
    4086 /Users/drornoy/Downloads/00001.7c485140197c.allbb.pdb 
    4087 --- 
    4088 warning | Ignored bad PDB record found on line 1 
    4089 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4090 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4091 &phi;<SUB>1</SUB> = [0, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4092 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4093 [0.229, 1.861, 2.650] 
    4094  
    4095 Chain information for 00001.7c485140197c.allbb.pdb #7 
    4096 --- 
    4097 Chain | Description 
    4098 A B C D | No description available 
    4099  
    4100 
    4101 > align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4102 
    4103 RMSD between 56 atom pairs is 0.427 angstroms 
    4104 
    4105 > select #7
    4106 
    4107 560 atoms, 556 bonds, 112 residues, 1 model selected 
    4108 
    4109 > hide sel cartoons
    4110 
    4111 > hide sel atoms
    4112 
    4113 > select #7@CA
    4114 
    4115 112 atoms, 112 residues, 1 model selected 
    4116 
    4117 > show sel atoms
    4118 
    4119 > style sel ball
    4120 
    4121 Changed 112 atom styles 
    4122 
    4123 > hide #!1 models
    4124 
    4125 > show #!1 models
    4126 
    4127 > open /Users/drornoy/Downloads/00001.7785a4b6ac64.allbb.pdb
    4128 
    4129 Summary of feedback from opening
    4130 /Users/drornoy/Downloads/00001.7785a4b6ac64.allbb.pdb 
    4131 --- 
    4132 warning | Ignored bad PDB record found on line 1 
    4133 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4134 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4135 &phi;<SUB>1</SUB> = [0, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4136 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4137 [0.229, 1.861, 2.150] 
    4138  
    4139 Chain information for 00001.7785a4b6ac64.allbb.pdb #8 
    4140 --- 
    4141 Chain | Description 
    4142 A B C D | No description available 
    4143  
    4144 
    4145 > align #8/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4146 
    4147 RMSD between 56 atom pairs is 0.427 angstroms 
    4148 
    4149 > style sel ball
    4150 
    4151 Changed 112 atom styles 
    4152 
    4153 > select #8
    4154 
    4155 560 atoms, 556 bonds, 112 residues, 1 model selected 
    4156 
    4157 > hide sel cartoons
    4158 
    4159 > hide sel atoms
    4160 
    4161 > select #8@CA
    4162 
    4163 112 atoms, 112 residues, 1 model selected 
    4164 
    4165 > show sel atoms
    4166 
    4167 > hide #!7 models
    4168 
    4169 > show #!7 models
    4170 
    4171 > hide #!7 models
    4172 
    4173 > show #!7 models
    4174 
    4175 > hide #!8 models
    4176 
    4177 > show #!8 models
    4178 
    4179 > style sel ball
    4180 
    4181 Changed 112 atom styles 
    4182 
    4183 > open /Users/drornoy/Downloads/00001.a6764c52a1b3.allbb.pdb
    4184 
    4185 Summary of feedback from opening
    4186 /Users/drornoy/Downloads/00001.a6764c52a1b3.allbb.pdb 
    4187 --- 
    4188 warning | Ignored bad PDB record found on line 1 
    4189 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4190 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4191 &phi;<SUB>1</SUB> = [0, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4192 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4193 [0.229, 1.861, 1.650] 
    4194  
    4195 Chain information for 00001.a6764c52a1b3.allbb.pdb #9 
    4196 --- 
    4197 Chain | Description 
    4198 A B C D | No description available 
    4199  
    4200 
    4201 > align #9/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4202 
    4203 RMSD between 56 atom pairs is 0.427 angstroms 
    4204 
    4205 > select #9
    4206 
    4207 560 atoms, 556 bonds, 112 residues, 1 model selected 
    4208 
    4209 > hide sel atoms
    4210 
    4211 > hide sel cartoons
    4212 
    4213 > select #9@CA
    4214 
    4215 112 atoms, 112 residues, 1 model selected 
    4216 
    4217 > style sel ball
    4218 
    4219 Changed 112 atom styles 
    4220 
    4221 > show sel atoms
    4222 
    4223 > save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
    4224 > with CCCP.cxs"
    4225 
    4226 > hide #!8 models
    4227 
    4228 > hide #!7 models
    4229 
    4230 > hide #!5 models
    4231 
    4232 > show #!3 models
    4233 
    4234 > hide #!1 models
    4235 
    4236 > close #7-8
    4237 
    4238 > open /Users/drornoy/Downloads/00001.f9c5ce979a6d.allbb.pdb
    4239 
    4240 Summary of feedback from opening
    4241 /Users/drornoy/Downloads/00001.f9c5ce979a6d.allbb.pdb 
    4242 --- 
    4243 warning | Ignored bad PDB record found on line 1 
    4244 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4245 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4246 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4247 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4248 [0.115, 0.930, 1.325] 
    4249  
    4250 Chain information for 00001.f9c5ce979a6d.allbb.pdb #7 
    4251 --- 
    4252 Chain | Description 
    4253 A B C D | No description available 
    4254  
    4255 
    4256 > close #9
    4257 
    4258 > select #7
    4259 
    4260 560 atoms, 556 bonds, 112 residues, 1 model selected 
    4261 
    4262 > hide sel atoms
    4263 
    4264 > hide sel cartoons
    4265 
    4266 > select #7@CA
    4267 
    4268 112 atoms, 112 residues, 1 model selected 
    4269 
    4270 > show sel atoms
    4271 
    4272 > style sel ball
    4273 
    4274 Changed 112 atom styles 
    4275 
    4276 > align #7/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4277 
    4278 RMSD between 56 atom pairs is 0.088 angstroms 
    4279 
    4280 > open /Users/drornoy/Downloads/00001.ec56c998cef3.allbb.pdb
    4281 
    4282 Summary of feedback from opening
    4283 /Users/drornoy/Downloads/00001.ec56c998cef3.allbb.pdb 
    4284 --- 
    4285 warning | Ignored bad PDB record found on line 1 
    4286 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4287 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4288 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 0], ori = [1, 0, 0],
    4289 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4290 [0.115, 0.930, 1.325] 
    4291  
    4292 Chain information for 00001.ec56c998cef3.allbb.pdb #8 
    4293 --- 
    4294 Chain | Description 
    4295 A B C D | No description available 
    4296  
    4297 
    4298 > select #8
    4299 
    4300 560 atoms, 556 bonds, 112 residues, 1 model selected 
    4301 
    4302 > hide sel atoms
    4303 
    4304 > hide sel cartoons
    4305 
    4306 > select #8@CA
    4307 
    4308 112 atoms, 112 residues, 1 model selected 
    4309 
    4310 > show sel atoms
    4311 
    4312 > style sel ball
    4313 
    4314 Changed 112 atom styles 
    4315 
    4316 > align #8/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4317 
    4318 RMSD between 56 atom pairs is 0.088 angstroms 
    4319 
    4320 > hide #!3 models
    4321 
    4322 > show #!3 models
    4323 
    4324 > close #8
    4325 
    4326 > open /Users/drornoy/Downloads/00001.dd4149efdbf3.allbb.pdb
    4327 
    4328 Summary of feedback from opening
    4329 /Users/drornoy/Downloads/00001.dd4149efdbf3.allbb.pdb 
    4330 --- 
    4331 warning | Ignored bad PDB record found on line 1 
    4332 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4333 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4334 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 30], ori = [1, 0, 0],
    4335 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4336 [0.115, 0.930, 1.325] 
    4337  
    4338 Chain information for 00001.dd4149efdbf3.allbb.pdb #8 
    4339 --- 
    4340 Chain | Description 
    4341 A B C D | No description available 
    4342  
    4343 
    4344 > select #8
    4345 
    4346 560 atoms, 556 bonds, 112 residues, 1 model selected 
    4347 
    4348 > hide sel atoms
    4349 
    4350 > hide sel cartoons
    4351 
    4352 > select #8@CA
    4353 
    4354 112 atoms, 112 residues, 1 model selected 
    4355 
    4356 > show sel atoms
    4357 
    4358 > style sel ball
    4359 
    4360 Changed 112 atom styles 
    4361 
    4362 > align #8/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4363 
    4364 RMSD between 56 atom pairs is 0.088 angstroms 
    4365 
    4366 > close #8
    4367 
    4368 > open /Users/drornoy/Downloads/00001.5ea4dc91db69.allbb.pdb
    4369 
    4370 Summary of feedback from opening
    4371 /Users/drornoy/Downloads/00001.5ea4dc91db69.allbb.pdb 
    4372 --- 
    4373 warning | Ignored bad PDB record found on line 1 
    4374 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4375 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4376 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 45], ori = [1, 0, 0],
    4377 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4378 [0.115, 0.930, 1.325] 
    4379  
    4380 Chain information for 00001.5ea4dc91db69.allbb.pdb #8 
    4381 --- 
    4382 Chain | Description 
    4383 A B C D | No description available 
    4384  
    4385 
    4386 > open /Users/drornoy/Downloads/00002.5ea4dc91db69.allbb.pdb
    4387 
    4388 Summary of feedback from opening
    4389 /Users/drornoy/Downloads/00002.5ea4dc91db69.allbb.pdb 
    4390 --- 
    4391 warning | Ignored bad PDB record found on line 1 
    4392 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4393 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4394 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 60], ori = [1, 0, 0],
    4395 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4396 [0.115, 0.930, 1.325] 
    4397  
    4398 Chain information for 00002.5ea4dc91db69.allbb.pdb #9 
    4399 --- 
    4400 Chain | Description 
    4401 A B C D | No description available 
    4402  
    4403 
    4404 > align #8-9/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4405 
    4406 RMSD between 56 atom pairs is 0.088 angstroms 
    4407 [Repeated 1 time(s)]
    4408 
    4409 > select #8-9
    4410 
    4411 1120 atoms, 1112 bonds, 224 residues, 2 models selected 
    4412 
    4413 > hide sel atoms
    4414 
    4415 > hide sel cartoons
    4416 
    4417 > select #8-9@CA
    4418 
    4419 224 atoms, 224 residues, 2 models selected 
    4420 
    4421 > show sel atoms
    4422 
    4423 > style sel ball
    4424 
    4425 Changed 224 atom styles 
    4426 
    4427 > hide #!9 models
    4428 
    4429 > show #!9 models
    4430 
    4431 > hide #!9 models
    4432 
    4433 > show #!9 models
    4434 
    4435 > hide #!8 models
    4436 
    4437 > open /Users/drornoy/Downloads/00001.45b97743dc78.allbb.pdb
    4438 
    4439 Summary of feedback from opening
    4440 /Users/drornoy/Downloads/00001.45b97743dc78.allbb.pdb 
    4441 --- 
    4442 warning | Ignored bad PDB record found on line 1 
    4443 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4444 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4445 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 90], ori = [1, 0, 0],
    4446 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4447 [0.115, 0.930, 1.325] 
    4448  
    4449 Chain information for 00001.45b97743dc78.allbb.pdb #10 
    4450 --- 
    4451 Chain | Description 
    4452 A B C D | No description available 
    4453  
    4454 
    4455 > hide sel & #!9 atoms
    4456 
    4457 > hide sel & #9 cartoons
    4458 
    4459 > select #8-10@CA
    4460 
    4461 336 atoms, 108 pseudobonds, 336 residues, 4 models selected 
    4462 
    4463 > show sel & #9-10 atoms
    4464 
    4465 > style sel & #10#!9 ball
    4466 
    4467 Changed 224 atom styles 
    4468 
    4469 > align #8-10/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4470 
    4471 RMSD between 56 atom pairs is 0.088 angstroms 
    4472 [Repeated 2 time(s)]
    4473 
    4474 > select #8-10
    4475 
    4476 1680 atoms, 1668 bonds, 216 pseudobonds, 336 residues, 5 models selected 
    4477 
    4478 > hide sel & #10#!9 cartoons
    4479 
    4480 > hide #!10 models
    4481 
    4482 > show #!10 models
    4483 
    4484 > hide #!10 models
    4485 
    4486 > show #!10 models
    4487 
    4488 > hide #!10 models
    4489 
    4490 > show #!10 models
    4491 
    4492 > hide #!10 models
    4493 
    4494 > show #!10 models
    4495 
    4496 > close #10
    4497 
    4498 > rename #8 45deg
    4499 
    4500 > rename #9 60deg
    4501 
    4502 > show #!8 models
    4503 
    4504 > hide #!8 models
    4505 
    4506 > hide #!9 models
    4507 
    4508 > show #!8 models
    4509 
    4510 > close #8-9
    4511 
    4512 > open /Users/drornoy/Downloads/56e2de5feeec/00007.56e2de5feeec.allbb.pdb
    4513 
    4514 Summary of feedback from opening
    4515 /Users/drornoy/Downloads/56e2de5feeec/00007.56e2de5feeec.allbb.pdb 
    4516 --- 
    4517 warning | Ignored bad PDB record found on line 1 
    4518 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4519 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4520 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4521 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4522 [0.115, 0.930, 3.500] 
    4523  
    4524 Chain information for 00007.56e2de5feeec.allbb.pdb #8 
    4525 --- 
    4526 Chain | Description 
    4527 A B C D | No description available 
    4528  
    4529 
    4530 > open /Users/drornoy/Downloads/56e2de5feeec/00001.56e2de5feeec.allbb.pdb
    4531 
    4532 Summary of feedback from opening
    4533 /Users/drornoy/Downloads/56e2de5feeec/00001.56e2de5feeec.allbb.pdb 
    4534 --- 
    4535 warning | Ignored bad PDB record found on line 1 
    4536 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4537 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4538 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4539 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4540 [0.115, 0.930, -3.500] 
    4541  
    4542 Chain information for 00001.56e2de5feeec.allbb.pdb #9 
    4543 --- 
    4544 Chain | Description 
    4545 A B C D | No description available 
    4546  
    4547 
    4548 > open /Users/drornoy/Downloads/56e2de5feeec/00002.56e2de5feeec.allbb.pdb
    4549 
    4550 Summary of feedback from opening
    4551 /Users/drornoy/Downloads/56e2de5feeec/00002.56e2de5feeec.allbb.pdb 
    4552 --- 
    4553 warning | Ignored bad PDB record found on line 1 
    4554 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4555 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4556 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4557 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4558 [0.115, 0.930, -2.333] 
    4559  
    4560 Chain information for 00002.56e2de5feeec.allbb.pdb #10 
    4561 --- 
    4562 Chain | Description 
    4563 A B C D | No description available 
    4564  
    4565 
    4566 > open /Users/drornoy/Downloads/56e2de5feeec/00003.56e2de5feeec.allbb.pdb
    4567 
    4568 Summary of feedback from opening
    4569 /Users/drornoy/Downloads/56e2de5feeec/00003.56e2de5feeec.allbb.pdb 
    4570 --- 
    4571 warning | Ignored bad PDB record found on line 1 
    4572 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4573 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4574 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4575 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4576 [0.115, 0.930, -1.167] 
    4577  
    4578 Chain information for 00003.56e2de5feeec.allbb.pdb #11 
    4579 --- 
    4580 Chain | Description 
    4581 A B C D | No description available 
    4582  
    4583 
    4584 > open /Users/drornoy/Downloads/56e2de5feeec/00004.56e2de5feeec.allbb.pdb
    4585 
    4586 Summary of feedback from opening
    4587 /Users/drornoy/Downloads/56e2de5feeec/00004.56e2de5feeec.allbb.pdb 
    4588 --- 
    4589 warning | Ignored bad PDB record found on line 1 
    4590 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4591 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4592 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4593 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4594 [0.115, 0.930, 0] 
    4595  
    4596 Chain information for 00004.56e2de5feeec.allbb.pdb #12 
    4597 --- 
    4598 Chain | Description 
    4599 A B C D | No description available 
    4600  
    4601 
    4602 > open /Users/drornoy/Downloads/56e2de5feeec/00005.56e2de5feeec.allbb.pdb
    4603 
    4604 Summary of feedback from opening
    4605 /Users/drornoy/Downloads/56e2de5feeec/00005.56e2de5feeec.allbb.pdb 
    4606 --- 
    4607 warning | Ignored bad PDB record found on line 1 
    4608 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4609 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4610 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4611 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4612 [0.115, 0.930, 1.167] 
    4613  
    4614 Chain information for 00005.56e2de5feeec.allbb.pdb #13 
    4615 --- 
    4616 Chain | Description 
    4617 A B C D | No description available 
    4618  
    4619 
    4620 > open /Users/drornoy/Downloads/56e2de5feeec/00006.56e2de5feeec.allbb.pdb
    4621 
    4622 Summary of feedback from opening
    4623 /Users/drornoy/Downloads/56e2de5feeec/00006.56e2de5feeec.allbb.pdb 
    4624 --- 
    4625 warning | Ignored bad PDB record found on line 1 
    4626 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4627 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4628 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4629 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4630 [0.115, 0.930, 2.333] 
    4631  
    4632 Chain information for 00006.56e2de5feeec.allbb.pdb #14 
    4633 --- 
    4634 Chain | Description 
    4635 A B C D | No description available 
    4636  
    4637 
    4638 > hide #8 models
    4639 
    4640 > hide #9 models
    4641 
    4642 > hide #10 models
    4643 
    4644 > show #9 models
    4645 
    4646 > show #10 models
    4647 
    4648 > show #8 models
    4649 
    4650 > select #8-14
    4651 
    4652 3920 atoms, 3892 bonds, 784 residues, 7 models selected 
    4653 
    4654 > hide sel atoms
    4655 
    4656 > hide sel cartoons
    4657 
    4658 > select #8-14@CA
    4659 
    4660 784 atoms, 784 residues, 7 models selected 
    4661 
    4662 > show sel atoms
    4663 
    4664 > style sel ball
    4665 
    4666 Changed 784 atom styles 
    4667 
    4668 > align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4669 
    4670 RMSD between 56 atom pairs is 0.088 angstroms 
    4671 [Repeated 6 time(s)]
    4672 
    4673 > hide #!9 models
    4674 
    4675 > hide #!10 models
    4676 
    4677 > hide #!11 models
    4678 
    4679 > hide #!12 models
    4680 
    4681 > hide #!13 models
    4682 
    4683 > hide #!14 models
    4684 
    4685 > show #!9 models
    4686 
    4687 > show #!14 models
    4688 
    4689 > hide #!14 models
    4690 
    4691 > hide #!9 models
    4692 
    4693 > show #!9 models
    4694 
    4695 > hide #!9 models
    4696 
    4697 > show #!14 models
    4698 
    4699 > show #!13 models
    4700 
    4701 > hide #!13 models
    4702 
    4703 > show #!13 models
    4704 
    4705 > hide #!13 models
    4706 
    4707 > show #!12 models
    4708 
    4709 > hide #!12 models
    4710 
    4711 > show #!12 models
    4712 
    4713 > hide #!12 models
    4714 
    4715 > hide #!14 models
    4716 
    4717 > show #!12 models
    4718 
    4719 > hide #!12 models
    4720 
    4721 > show #!12 models
    4722 
    4723 > show #!9 models
    4724 
    4725 > hide #!9 models
    4726 
    4727 > hide #!12 models
    4728 
    4729 > close #9-14
    4730 
    4731 > open /Users/drornoy/Downloads/00001.11296445a725.allbb.pdb
    4732 
    4733 Summary of feedback from opening
    4734 /Users/drornoy/Downloads/00001.11296445a725.allbb.pdb 
    4735 --- 
    4736 warning | Ignored bad PDB record found on line 1 
    4737 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4738 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4739 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4740 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4741 [0.115, 0.930, 4.500] 
    4742  
    4743 Chain information for 00001.11296445a725.allbb.pdb #9 
    4744 --- 
    4745 Chain | Description 
    4746 A B C D | No description available 
    4747  
    4748 
    4749 > open /Users/drornoy/Downloads/00003.11296445a725.allbb.pdb
    4750 
    4751 Summary of feedback from opening
    4752 /Users/drornoy/Downloads/00003.11296445a725.allbb.pdb 
    4753 --- 
    4754 warning | Ignored bad PDB record found on line 1 
    4755 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4756 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4757 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4758 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4759 [0.115, 0.930, 6.500] 
    4760  
    4761 Chain information for 00003.11296445a725.allbb.pdb #10 
    4762 --- 
    4763 Chain | Description 
    4764 A B C D | No description available 
    4765  
    4766 
    4767 > open /Users/drornoy/Downloads/00002.11296445a725.allbb.pdb
    4768 
    4769 Summary of feedback from opening
    4770 /Users/drornoy/Downloads/00002.11296445a725.allbb.pdb 
    4771 --- 
    4772 warning | Ignored bad PDB record found on line 1 
    4773 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4774 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4775 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    4776 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4777 [0.115, 0.930, 5.500] 
    4778  
    4779 Chain information for 00002.11296445a725.allbb.pdb #11 
    4780 --- 
    4781 Chain | Description 
    4782 A B C D | No description available 
    4783  
    4784 
    4785 > align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4786 
    4787 RMSD between 56 atom pairs is 0.088 angstroms 
    4788 [Repeated 3 time(s)]
    4789 
    4790 > select #8-14
    4791 
    4792 2240 atoms, 2224 bonds, 108 pseudobonds, 448 residues, 5 models selected 
    4793 
    4794 > hide sel atoms
    4795 
    4796 > hide sel cartoons
    4797 
    4798 > select #8-14@CA
    4799 
    4800 448 atoms, 448 residues, 4 models selected 
    4801 
    4802 > show sel atoms
    4803 
    4804 > style sel ball
    4805 
    4806 Changed 448 atom styles 
    4807 
    4808 > hide #!9 models
    4809 
    4810 > hide #!11 models
    4811 
    4812 > hide #!7 models
    4813 
    4814 > hide #!8 models
    4815 
    4816 > open /Users/drornoy/Downloads/00001.61b39032939a.allbb.pdb
    4817 
    4818 Summary of feedback from opening
    4819 /Users/drornoy/Downloads/00001.61b39032939a.allbb.pdb 
    4820 --- 
    4821 warning | Ignored bad PDB record found on line 1 
    4822 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4823 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4824 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 10], ori = [1, 0, 0],
    4825 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4826 [0.115, 0.930, 6.500] 
    4827  
    4828 Chain information for 00001.61b39032939a.allbb.pdb #12 
    4829 --- 
    4830 Chain | Description 
    4831 A B C D | No description available 
    4832  
    4833 
    4834 > select #8-14
    4835 
    4836 2800 atoms, 2780 bonds, 432 pseudobonds, 560 residues, 9 models selected 
    4837 
    4838 > hide sel & #12#!10 atoms
    4839 
    4840 > hide sel & #10,12 cartoons
    4841 
    4842 > select #8-14@CA
    4843 
    4844 560 atoms, 324 pseudobonds, 560 residues, 8 models selected 
    4845 
    4846 > style sel & #10,12 ball
    4847 
    4848 Changed 224 atom styles 
    4849 
    4850 > show sel & #10,12 atoms
    4851 
    4852 > align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4853 
    4854 RMSD between 56 atom pairs is 0.088 angstroms 
    4855 [Repeated 4 time(s)]
    4856 
    4857 > hide #!12 models
    4858 
    4859 > show #!12 models
    4860 
    4861 > hide #!12 models
    4862 
    4863 > show #!12 models
    4864 
    4865 > hide #!12 models
    4866 
    4867 > show #!12 models
    4868 
    4869 > hide #!12 models
    4870 
    4871 > show #!12 models
    4872 
    4873 > hide #!12 models
    4874 
    4875 > show #!12 models
    4876 
    4877 > hide #!12 models
    4878 
    4879 > show #!12 models
    4880 
    4881 > hide #!12 models
    4882 
    4883 > show #!12 models
    4884 
    4885 > hide #!12 models
    4886 
    4887 > close #11-12
    4888 
    4889 > open /Users/drornoy/Downloads/00001.3650e325fd8a.allbb.pdb
    4890 
    4891 Summary of feedback from opening
    4892 /Users/drornoy/Downloads/00001.3650e325fd8a.allbb.pdb 
    4893 --- 
    4894 warning | Ignored bad PDB record found on line 1 
    4895 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4896 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4897 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 18], ori = [1, 0, 0],
    4898 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4899 [0.115, 0.930, 6.500] 
    4900  
    4901 Chain information for 00001.3650e325fd8a.allbb.pdb #11 
    4902 --- 
    4903 Chain | Description 
    4904 A B C D | No description available 
    4905  
    4906 
    4907 > open /Users/drornoy/Downloads/00003.3650e325fd8a.allbb.pdb
    4908 
    4909 Summary of feedback from opening
    4910 /Users/drornoy/Downloads/00003.3650e325fd8a.allbb.pdb 
    4911 --- 
    4912 warning | Ignored bad PDB record found on line 1 
    4913 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4914 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4915 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 30], ori = [1, 0, 0],
    4916 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4917 [0.115, 0.930, 6.500] 
    4918  
    4919 Chain information for 00003.3650e325fd8a.allbb.pdb #12 
    4920 --- 
    4921 Chain | Description 
    4922 A B C D | No description available 
    4923  
    4924 
    4925 > open /Users/drornoy/Downloads/00002.3650e325fd8a.allbb.pdb
    4926 
    4927 Summary of feedback from opening
    4928 /Users/drornoy/Downloads/00002.3650e325fd8a.allbb.pdb 
    4929 --- 
    4930 warning | Ignored bad PDB record found on line 1 
    4931 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4932 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    4933 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 24], ori = [1, 0, 0],
    4934 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    4935 [0.115, 0.930, 6.500] 
    4936  
    4937 Chain information for 00002.3650e325fd8a.allbb.pdb #13 
    4938 --- 
    4939 Chain | Description 
    4940 A B C D | No description available 
    4941  
    4942 
    4943 > align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4944 
    4945 RMSD between 56 atom pairs is 0.088 angstroms 
    4946 [Repeated 5 time(s)]
    4947 
    4948 > hide sel & #!10 cartoons
    4949 
    4950 > select #8-14 &~@CA
    4951 
    4952 2688 atoms, 1992 bonds, 672 residues, 6 models selected 
    4953 
    4954 > hide sel & #11-13#!10 cartoons
    4955 
    4956 > hide sel & #11-13#!10 atoms
    4957 
    4958 > select #8-14@CA
    4959 
    4960 672 atoms, 324 pseudobonds, 672 residues, 9 models selected 
    4961 
    4962 > style sel & #11-13#!10 ball
    4963 
    4964 Changed 448 atom styles 
    4965 
    4966 > align #8-14/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    4967 
    4968 RMSD between 56 atom pairs is 0.088 angstroms 
    4969 [Repeated 5 time(s)]
    4970 
    4971 > select #8-14@CA
    4972 
    4973 672 atoms, 324 pseudobonds, 672 residues, 9 models selected 
    4974 
    4975 > show sel & #11-13#!10 atoms
    4976 
    4977 > hide #!13 models
    4978 
    4979 > hide #!11 models
    4980 
    4981 > hide #!10 models
    4982 
    4983 > close #8-11
    4984 
    4985 > close #13
    4986 
    4987 > close #12
    4988 
    4989 > close #7
    4990 
    4991 > open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB antiparallel 1.pdb"
    4992 > "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB antiparallel 2.pdb"
    4993 
    4994 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
    4995 4HB antiparallel 1.pdb 
    4996 --- 
    4997 warning | Ignored bad PDB record found on line 1 
    4998 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    4999 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5000 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    5001 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    5002 [0.115, 0.930, 1.325] 
    5003  
    5004 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
    5005 4HB antiparallel 2.pdb 
    5006 --- 
    5007 warning | Ignored bad PDB record found on line 1 
    5008 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    5009 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5010 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 30], ori = [1, 0, 0],
    5011 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    5012 [0.115, 0.930, 6.500] 
    5013  
    5014 Chain information for CCCP LH2 4HB antiparallel 1.pdb #7 
    5015 --- 
    5016 Chain | Description 
    5017 A B C D | No description available 
    5018  
    5019 Chain information for CCCP LH2 4HB antiparallel 2.pdb #8 
    5020 --- 
    5021 Chain | Description 
    5022 A B C D | No description available 
    5023  
    5024 
    5025 > select #8-14
    5026 
    5027 560 atoms, 556 bonds, 112 residues, 1 model selected 
    5028 
    5029 > select #7-8
    5030 
    5031 1120 atoms, 1112 bonds, 224 residues, 2 models selected 
    5032 
    5033 > hide sel atoms
    5034 
    5035 > hide sel cartoons
    5036 
    5037 > select #7-8@CA
    5038 
    5039 224 atoms, 224 residues, 2 models selected 
    5040 
    5041 > show sel atoms
    5042 
    5043 > style sel ball
    5044 
    5045 Changed 224 atom styles 
    5046 
    5047 > align #7-8/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    5048 
    5049 RMSD between 56 atom pairs is 0.088 angstroms 
    5050 [Repeated 1 time(s)]
    5051 
    5052 > hide #!7 models
    5053 
    5054 > show #!7 models
    5055 
    5056 > hide #!7 models
    5057 
    5058 > save "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB antiparallel 2.pdb"
    5059 > models #8
    5060 
    5061 > close #7-8
    5062 
    5063 > open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB antiparallel 2.pdb"
    5064 
    5065 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
    5066 4HB antiparallel 2.pdb 
    5067 --- 
    5068 warning | Ignored bad PDB record found on line 1 
    5069 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    5070 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5071 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 30], ori = [1, 0, 0],
    5072 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    5073 [0.115, 0.930, 6.500] 
    5074  
    5075 Chain information for CCCP LH2 4HB antiparallel 2.pdb #7 
    5076 --- 
    5077 Chain | Description 
    5078 A B C D | No description available 
    5079  
    5080 
    5081 > select #7-8@CA
    5082 
    5083 112 atoms, 112 residues, 1 model selected 
    5084 
    5085 > select #7-8
    5086 
    5087 560 atoms, 556 bonds, 112 residues, 1 model selected 
    5088 
    5089 > hide sel atoms
    5090 
    5091 > hide sel cartoons
    5092 
    5093 > select #7-8@CA
    5094 
    5095 112 atoms, 112 residues, 1 model selected 
    5096 
    5097 > show sel atoms
    5098 
    5099 > style sel ball
    5100 
    5101 Changed 112 atom styles 
    5102 
    5103 > show #!1 models
    5104 
    5105 > hide #!3 models
    5106 
    5107 > select #1/J-K:22
    5108 
    5109 40 atoms, 40 bonds, 4 residues, 2 models selected 
    5110 
    5111 > select #1/J-K:22 &@C,N,O
    5112 
    5113 12 atoms, 4 bonds, 4 residues, 2 models selected 
    5114 
    5115 > hide sel atoms
    5116 
    5117 > hide #!1.1 models
    5118 
    5119 > show #!1.1 models
    5120 
    5121 > hide #!1.2 models
    5122 
    5123 > show #!1.2 models
    5124 
    5125 > hide #!1 models
    5126 
    5127 > show #!1 models
    5128 
    5129 > hide #!7 models
    5130 
    5131 > show #!7 models
    5132 
    5133 > show #!3 models
    5134 
    5135 > hide #!3 models
    5136 
    5137 > select #7/D:10/A:21
    5138 
    5139 10 atoms, 8 bonds, 2 residues, 1 model selected 
    5140 
    5141 > ui tool show Rotamers
    5142 
    5143 > swapaa interactive sel HIS rotLib Dunbrack
    5144 
    5145 CCCP LH2 4HB antiparallel 2.pdb #7/A GLY 21: phi -66.4, psi -41.3 trans 
    5146 Changed 288 bond radii 
    5147 CCCP LH2 4HB antiparallel 2.pdb #!7/D GLY 10: phi -66.5, psi -41.3 trans 
    5148 Changed 288 bond radii 
    5149 
    5150 > ui tool show Rotamers
    5151 
    5152 > swapaa interactive sel HIS rotLib Dunbrack
    5153 
    5154 CCCP LH2 4HB antiparallel 2.pdb #7/A GLY 21: phi -66.4, psi -41.3 trans 
    5155 Changed 288 bond radii 
    5156 CCCP LH2 4HB antiparallel 2.pdb #!7/D GLY 10: phi -66.5, psi -41.3 trans 
    5157 Changed 288 bond radii 
    5158 
    5159 > select #7/D:11/A:21
    5160 
    5161 10 atoms, 8 bonds, 2 residues, 1 model selected 
    5162 
    5163 > open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB antiparallel 1.pdb"
    5164 
    5165 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
    5166 4HB antiparallel 1.pdb 
    5167 --- 
    5168 warning | Ignored bad PDB record found on line 1 
    5169 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    5170 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5171 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 0, 0],
    5172 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    5173 [0.115, 0.930, 1.325] 
    5174  
    5175 Chain information for CCCP LH2 4HB antiparallel 1.pdb #8 
    5176 --- 
    5177 Chain | Description 
    5178 A B C D | No description available 
    5179  
    5180 
    5181 > select #8
    5182 
    5183 560 atoms, 556 bonds, 112 residues, 1 model selected 
    5184 
    5185 > hide sel cartoons
    5186 
    5187 > hide sel atoms
    5188 
    5189 > select #8@CA
    5190 
    5191 112 atoms, 112 residues, 1 model selected 
    5192 
    5193 > show sel atoms
    5194 
    5195 > style sel ball
    5196 
    5197 Changed 112 atom styles 
    5198 
    5199 > align #7-8/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    5200 
    5201 RMSD between 56 atom pairs is 0.088 angstroms 
    5202 [Repeated 1 time(s)]
    5203 
    5204 > select up
    5205 
    5206 560 atoms, 556 bonds, 112 residues, 1 model selected 
    5207 
    5208 > select #8/D:7
    5209 
    5210 5 atoms, 4 bonds, 1 residue, 1 model selected 
    5211 
    5212 > swapaa interactive sel HIS rotLib Dunbrack
    5213 
    5214 CCCP LH2 4HB antiparallel 1.pdb #8/D GLY 7: phi -66.3, psi -41.4 trans 
    5215 Changed 288 bond radii 
    5216 
    5217 > select #8/D:6
    5218 
    5219 5 atoms, 4 bonds, 1 residue, 1 model selected 
    5220 
    5221 > swapaa interactive sel HIS rotLib Dunbrack
    5222 
    5223 CCCP LH2 4HB antiparallel 1.pdb #8/D GLY 6: phi -66.5, psi -41.4 trans 
    5224 Changed 288 bond radii 
    5225 
    5226 > open /Users/drornoy/Downloads/00001.1fceb8710533.allbb.pdb
    5227 
    5228 Summary of feedback from opening
    5229 /Users/drornoy/Downloads/00001.1fceb8710533.allbb.pdb 
    5230 --- 
    5231 warning | Ignored bad PDB record found on line 1 
    5232 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    5233 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5234 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 1, 1],
    5235 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    5236 [0.172, -0.465, 4.575] 
    5237  
    5238 Chain information for 00001.1fceb8710533.allbb.pdb #9 
    5239 --- 
    5240 Chain | Description 
    5241 A B C D | No description available 
    5242  
    5243 
    5244 > hide #!8 models
    5245 
    5246 > hide #!7 models
    5247 
    5248 > show #!3 models
    5249 
    5250 > align #9/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    5251 
    5252 RMSD between 56 atom pairs is 0.078 angstroms 
    5253 
    5254 > hide #!3 models
    5255 
    5256 > show #!3 models
    5257 
    5258 > open /Users/drornoy/Downloads/00001.058ccef474a9.allbb.pdb
    5259 
    5260 Summary of feedback from opening
    5261 /Users/drornoy/Downloads/00001.058ccef474a9.allbb.pdb 
    5262 --- 
    5263 warning | Ignored bad PDB record found on line 1 
    5264 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    5265 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5266 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 1, 1],
    5267 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    5268 [0.229, -1.861, 2.650] 
    5269  
    5270 Chain information for 00001.058ccef474a9.allbb.pdb #10 
    5271 --- 
    5272 Chain | Description 
    5273 A B C D | No description available 
    5274  
    5275 
    5276 > close #9-10
    5277 
    5278 > hide #!1 models
    5279 
    5280 > open /Users/drornoy/Downloads/00001.058ccef474a9.allbb.pdb
    5281 
    5282 Summary of feedback from opening
    5283 /Users/drornoy/Downloads/00001.058ccef474a9.allbb.pdb 
    5284 --- 
    5285 warning | Ignored bad PDB record found on line 1 
    5286 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    5287 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5288 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [1, 1, 1],
    5289 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    5290 [0.229, -1.861, 2.650] 
    5291  
    5292 Chain information for 00001.058ccef474a9.allbb.pdb #9 
    5293 --- 
    5294 Chain | Description 
    5295 A B C D | No description available 
    5296  
    5297 
    5298 > align #9/A@CA/B@CA toAtoms #3/A@CA/B@CA each structure
    5299 
    5300 RMSD between 56 atom pairs is 0.075 angstroms 
    5301 
    5302 > select #9
    5303 
    5304 560 atoms, 556 bonds, 112 residues, 1 model selected 
    5305 
    5306 > hide sel atoms
    5307 
    5308 > hide sel cartoons
    5309 
    5310 > select #9@CA
    5311 
    5312 112 atoms, 112 residues, 1 model selected 
    5313 
    5314 > show sel atoms
    5315 
    5316 > style sel ball
    5317 
    5318 Changed 112 atom styles 
    5319 
    5320 > close #9
    5321 
    5322 > close #8
    5323 
    5324 > show #!1 models
    5325 
    5326 > open /Users/drornoy/Downloads/00001.d355b43f3593.allbb.pdb
    5327 
    5328 Summary of feedback from opening
    5329 /Users/drornoy/Downloads/00001.d355b43f3593.allbb.pdb 
    5330 --- 
    5331 warning | Ignored bad PDB record found on line 1 
    5332 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    5333 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5334 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 0, 1],
    5335 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    5336 [0.229, -1.861, 2.650] 
    5337  
    5338 Chain information for 00001.d355b43f3593.allbb.pdb #8 
    5339 --- 
    5340 Chain | Description 
    5341 A B C D | No description available 
    5342  
    5343 
    5344 > align #8/A@CA/D@CA toAtoms #3/A@CA/D@CA each structure
    5345 
    5346 RMSD between 56 atom pairs is 0.075 angstroms 
    5347 
    5348 > select #8
    5349 
    5350 560 atoms, 556 bonds, 112 residues, 1 model selected 
    5351 
    5352 > hide sel atoms
    5353 
    5354 > hide sel cartoons
    5355 
    5356 > select #8@CA
    5357 
    5358 112 atoms, 112 residues, 1 model selected 
    5359 
    5360 > show sel atoms
    5361 
    5362 > style sel ball
    5363 
    5364 Changed 112 atom styles 
    5365 
    5366 > hide #!1 models
    5367 
    5368 > show #!1 models
    5369 
    5370 > open /Users/drornoy/Downloads/00001.ff8667eb2cd6.allbb.pdb
    5371 
    5372 Summary of feedback from opening
    5373 /Users/drornoy/Downloads/00001.ff8667eb2cd6.allbb.pdb 
    5374 --- 
    5375 warning | Ignored bad PDB record found on line 1 
    5376 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    5377 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5378 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 0, 1],
    5379 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> = [0,
    5380 0, 2.650] 
    5381  
    5382 Chain information for 00001.ff8667eb2cd6.allbb.pdb #9 
    5383 --- 
    5384 Chain | Description 
    5385 A B C D | No description available 
    5386  
    5387 
    5388 > align #9/A@CA/D@CA toAtoms #3/A@CA/D@CA each structure
    5389 
    5390 RMSD between 56 atom pairs is 0.075 angstroms 
    5391 
    5392 > select #9
    5393 
    5394 560 atoms, 556 bonds, 112 residues, 1 model selected 
    5395 
    5396 > hide sel atoms
    5397 
    5398 > hide sel cartoons
    5399 
    5400 > select #9@CA
    5401 
    5402 112 atoms, 112 residues, 1 model selected 
    5403 
    5404 > show sel atoms
    5405 
    5406 > style sel ball
    5407 
    5408 Changed 112 atom styles 
    5409 
    5410 > hide #!1 models
    5411 
    5412 > select #8/C:1@CA
    5413 
    5414 1 atom, 1 residue, 1 model selected 
    5415 
    5416 > select #9/C:1@CA
    5417 
    5418 1 atom, 1 residue, 1 model selected 
    5419 
    5420 > select add #3/C:28@CA
    5421 
    5422 2 atoms, 2 residues, 2 models selected 
    5423 
    5424 > ui tool show Distances
    5425 
    5426 > distance #9/C:1@CA #3/C:28@CA
    5427 
    5428 Distance between 00001.ff8667eb2cd6.allbb.pdb #9/C GLY 1 CA and CCCP sim LH2
    5429 parallel 4HB.pdb #3/C GLY 28 CA: 2.409Å 
    5430 
    5431 > hide #9.1 models
    5432 
    5433 > show #9.1 models
    5434 
    5435 > hide #!8 models
    5436 
    5437 > select #9/B:3@CA
    5438 
    5439 1 atom, 1 residue, 1 model selected 
    5440 
    5441 > select add #3/B:26@CA
    5442 
    5443 2 atoms, 2 residues, 2 models selected 
    5444 
    5445 > distance #9/B:3@CA #3/B:26@CA
    5446 
    5447 Distance between 00001.ff8667eb2cd6.allbb.pdb #9/B GLY 3 CA and CCCP sim LH2
    5448 parallel 4HB.pdb #3/B GLY 26 CA: 4.446Å 
    5449 
    5450 > distance style color gold
    5451 
    5452 [Repeated 2 time(s)]
    5453 
    5454 > ~distance #3/D:28@CA #4/D:1@CA
    5455 
    5456 > ~distance #3/C:28@CA #4/C:1@CA
    5457 
    5458 > ~distance #9/B:3@CA #3/B:26@CA
    5459 
    5460 > ~distance #9/C:1@CA #3/C:28@CA
    5461 
    5462 > distance #9/B:3@CA #3/B:26@CA
    5463 
    5464 Distance between 00001.ff8667eb2cd6.allbb.pdb #9/B GLY 3 CA and CCCP sim LH2
    5465 parallel 4HB.pdb #3/B GLY 26 CA: 4.446Å 
    5466 
    5467 > select #9/C:1@CA
    5468 
    5469 1 atom, 1 residue, 1 model selected 
    5470 
    5471 > select add #3/C:28@CA
    5472 
    5473 2 atoms, 2 residues, 2 models selected 
    5474 
    5475 > distance #9/C:1@CA #3/C:28@CA
    5476 
    5477 Distance between 00001.ff8667eb2cd6.allbb.pdb #9/C GLY 1 CA and CCCP sim LH2
    5478 parallel 4HB.pdb #3/C GLY 28 CA: 2.409Å 
    5479 
    5480 > open /Users/drornoy/Downloads/00001.698aef127d95.allbb.pdb
    5481 
    5482 Summary of feedback from opening
    5483 /Users/drornoy/Downloads/00001.698aef127d95.allbb.pdb 
    5484 --- 
    5485 warning | Ignored bad PDB record found on line 1 
    5486 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    5487 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5488 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 0, 1],
    5489 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    5490 [4.450, 2.410, 2.650] 
    5491  
    5492 Chain information for 00001.698aef127d95.allbb.pdb #10 
    5493 --- 
    5494 Chain | Description 
    5495 A B C D | No description available 
    5496  
    5497 
    5498 > select #10
    5499 
    5500 560 atoms, 556 bonds, 112 residues, 1 model selected 
    5501 
    5502 > hide sel atoms
    5503 
    5504 > hide sel cartoons
    5505 
    5506 > select #10@CA
    5507 
    5508 112 atoms, 112 residues, 1 model selected 
    5509 
    5510 > show sel atoms
    5511 
    5512 > style sel ball
    5513 
    5514 Changed 112 atom styles 
    5515 
    5516 > align #10/A@CA/D@CA toAtoms #3/A@CA/D@CA each structure
    5517 
    5518 RMSD between 56 atom pairs is 0.075 angstroms 
    5519 
    5520 > hide #!9 models
    5521 
    5522 > save "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB p_ap_ap_p.pdb" models
    5523 > #10
    5524 
    5525 > close #7-10
    5526 
    5527 > open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB p_ap_ap_p.pdb"
    5528 
    5529 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
    5530 4HB p_ap_ap_p.pdb 
    5531 --- 
    5532 warning | Ignored bad PDB record found on line 1 
    5533 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    5534 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    5535 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 0, 1],
    5536 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    5537 [4.450, 2.410, 2.650] 
    5538  
    5539 Chain information for CCCP LH2 4HB p_ap_ap_p.pdb #7 
    5540 --- 
    5541 Chain | Description 
    5542 A B C D | No description available 
    5543  
    5544 
    5545 > show #!1 models
    5546 
    5547 > hide #!1 models
    5548 
    5549 > hide #!3 models
    5550 
    5551 > select #7
    5552 
    5553 560 atoms, 556 bonds, 112 residues, 1 model selected 
    5554 
    5555 > hide sel cartoons
    5556 
    5557 > select #7@CA
    5558 
    5559 112 atoms, 112 residues, 1 model selected 
    5560 
    5561 > show sel atoms
    5562 
    5563 > style sel ball
    5564 
    5565 Changed 112 atom styles 
    5566 
    5567 > show #!1 models
    5568 
    5569 > select #7/A:21/D:21
    5570 
    5571 10 atoms, 8 bonds, 2 residues, 1 model selected 
    5572 
    5573 > ui tool show Rotamers
    5574 
    5575 > swapaa interactive sel HIS rotLib Dunbrack
    5576 
    5577 CCCP LH2 4HB p_ap_ap_p.pdb #7/A GLY 21: phi -66.3, psi -41.4 trans 
    5578 Changed 288 bond radii 
    5579 CCCP LH2 4HB p_ap_ap_p.pdb #!7/D GLY 21: phi -66.3, psi -41.4 trans 
    5580 Changed 288 bond radii 
    5581 
    5582 > swapaa #!7/A:21 HIS criteria 4 rotLib Dunbrack
    5583 
    5584 Using Dunbrack library 
    5585 CCCP LH2 4HB p_ap_ap_p.pdb #!7/A GLY 21: phi -66.3, psi -41.4 trans 
    5586 Applying HIS rotamer (chi angles: -70.4 82.5) to CCCP LH2 4HB p_ap_ap_p.pdb
    5587 #!7/A HIS 21 
    5588 
    5589 > swapaa #!7/D:21 HIS criteria 4 rotLib Dunbrack
    5590 
    5591 Using Dunbrack library 
    5592 CCCP LH2 4HB p_ap_ap_p.pdb #!7/D GLY 21: phi -66.3, psi -41.4 trans 
    5593 Applying HIS rotamer (chi angles: -70.4 82.5) to CCCP LH2 4HB p_ap_ap_p.pdb
    5594 #!7/D HIS 21 
    5595 
    5596 > select #7/A:21/D:21 &~@CA
    5597 
    5598 20 atoms, 16 bonds, 2 residues, 1 model selected 
    5599 
    5600 > style sel stick
    5601 
    5602 Changed 20 atom styles 
    5603 
    5604 > save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
    5605 > with CCCP.cxs"
    5606 
    5607 > select #1/A-B:11-38/J-K:20-47
    5608 
    5609 1604 atoms, 1628 bonds, 216 pseudobonds, 224 residues, 4 models selected 
    5610 
    5611 > ui tool show H-Bonds
    5612 
    5613 > hbonds sel dashes 6 interModel false intraRes false reveal true
    5614 > retainCurrent true
    5615 
    5616 354 hydrogen bonds found 
    5617 
    5618 > ui tool show H-Bonds
    5619 
    5620 > select #1/A-B:11-38/J-K:20-47 &~backbone
    5621 
    5622 708 atoms, 524 bonds, 4 pseudobonds, 208 residues, 4 models selected 
    5623 
    5624 > hbonds sel interModel false intraRes false reveal true
    5625 
    5626 116 hydrogen bonds found 
    5627 
    5628 > hide #!7 models
    5629 
    5630 > show #!7 models
    5631 
    5632 > select #7/A:22
    5633 
    5634 5 atoms, 4 bonds, 1 residue, 1 model selected 
    5635 
    5636 > select #7/A:20
    5637 
    5638 5 atoms, 4 bonds, 1 residue, 1 model selected 
    5639 
    5640 > select #7/A:17
    5641 
    5642 5 atoms, 4 bonds, 1 residue, 1 model selected 
    5643 
    5644 > ui tool show Rotamers
    5645 
    5646 > swapaa interactive sel SER rotLib Dunbrack
    5647 
    5648 CCCP LH2 4HB p_ap_ap_p.pdb #7/A GLY 17: phi -66.4, psi -41.3 trans 
    5649 Changed 9 bond radii 
    5650 
    5651 > swapaa #!7/A:17 SER criteria 3 rotLib Dunbrack
    5652 
    5653 Using Dunbrack library 
    5654 CCCP LH2 4HB p_ap_ap_p.pdb #!7/A GLY 17: phi -66.4, psi -41.3 trans 
    5655 Applying SER rotamer (chi angles: -179.8) to CCCP LH2 4HB p_ap_ap_p.pdb #!7/A
    5656 SER 17 
    5657 
    5658 > select #7/A:17 &~backbone
    5659 
    5660 2 atoms, 1 bond, 1 residue, 1 model selected 
    5661 
    5662 > style sel stick
    5663 
    5664 Changed 2 atom styles 
    5665 
    5666 > hide #!1 models
    5667 
    5668 > show #!1 models
    5669 
    5670 > hide #!1 models
    5671 
    5672 > hbonds sel dashes 6 interModel false intraRes false reveal true
    5673 > retainCurrent true
    5674 
    5675 0 hydrogen bonds found 
    5676 
    5677 > show #!1 models
    5678 
    5679 > hide #!7 models
    5680 
    5681 > select #1/B
    5682 
    5683 1180 atoms, 1186 bonds, 40 pseudobonds, 134 residues, 6 models selected 
    5684 
    5685 > show #!7 models
    5686 
    5687 > color sel byhetero
    5688 
    5689 > hide #!7 models
    5690 
    5691 > show #!7 models
    5692 
    5693 > select #7/B:12
    5694 
    5695 5 atoms, 4 bonds, 1 residue, 1 model selected 
    5696 
    5697 > ui tool show H-Bonds
    5698 
    5699 > ui tool show Rotamers
    5700 
    5701 > swapaa interactive sel SER rotLib Dunbrack
    5702 
    5703 CCCP LH2 4HB p_ap_ap_p.pdb #7/B GLY 12: phi -66.4, psi -41.3 trans 
    5704 Changed 9 bond radii 
    5705 
    5706 > swapaa #!7/B:12 SER criteria 1 rotLib Dunbrack
    5707 
    5708 Using Dunbrack library 
    5709 CCCP LH2 4HB p_ap_ap_p.pdb #!7/B GLY 12: phi -66.4, psi -41.3 trans 
    5710 Applying SER rotamer (chi angles: -65.9) to CCCP LH2 4HB p_ap_ap_p.pdb #!7/B
    5711 SER 12 
    5712 
    5713 > select #7/B:12 &~backbone
    5714 
    5715 2 atoms, 1 bond, 1 residue, 1 model selected 
    5716 
    5717 > style sel stick
    5718 
    5719 Changed 2 atom styles 
    5720 
    5721 > color sel byhetero
    5722 
    5723 > hide #!7 models
    5724 
    5725 > select #1/A-B:11-38/J-K:20-47 &backbone
    5726 
    5727 896 atoms, 888 bonds, 224 residues, 2 models selected 
    5728 
    5729 > select #1/A-B:11-38/J-K:20-47 &@C,N,O
    5730 
    5731 672 atoms, 440 bonds, 224 residues, 2 models selected 
    5732 
    5733 > hide sel atoms
    5734 
    5735 > select #1/B:101
    5736 
    5737 132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 4 models selected 
    5738 
    5739 > hide sel atoms
    5740 
    5741 > select #1/A-B:102
    5742 
    5743 264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    5744 
    5745 > hide sel atoms
    5746 
    5747 > show #!7 models
    5748 
    5749 > select #1/J:101
    5750 
    5751 132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 4 models selected 
    5752 
    5753 > hide sel atoms
    5754 
    5755 > save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
    5756 > with CCCP.cxs"
    5757 
    5758 > show #!2 models
    5759 
    5760 > hide #!1 models
    5761 
    5762 > hide #!7 models
    5763 
    5764 > show #!7 models
    5765 
    5766 > show #!1 models
    5767 
    5768 > close #6#2-5
    5769 
    5770 > save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
    5771 > p_ap_ap_p.cxs"
    5772 
    5773 > combine #7
    5774 
    5775 > close #7
    5776 
    5777 > rename #2 "CCCP LH2 4HB p_ap_ap_p.pdb"
    5778 
    5779 > save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
    5780 > p_ap_ap_p.cxs"
    5781 
    5782 > select #1/A-B:102
    5783 
    5784 264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    5785 
    5786 > show sel atoms
    5787 
    5788 > hide sel atoms
    5789 
    5790 > select #1/A-B:11-38/J-K:20-47/A:101/B:102
    5791 
    5792 1868 atoms, 1908 bonds, 278 pseudobonds, 228 residues, 8 models selected 
    5793 
    5794 > select #1 &~/A-B:11-38/J-K:20-47/A:101/B:102
    5795 
    5796 17132 atoms, 17066 bonds, 280 pseudobonds, 2140 residues, 5 models selected 
    5797 
    5798 > hide sel atoms
    5799 
    5800 > select up
    5801 
    5802 17956 atoms, 17910 bonds, 280 pseudobonds, 2252 residues, 5 models selected 
    5803 
    5804 > select down
    5805 
    5806 17132 atoms, 17066 bonds, 280 pseudobonds, 2140 residues, 5 models selected 
    5807 
    5808 > select #1/K:102
    5809 
    5810 2 atoms, 2 residues, 2 models selected 
    5811 
    5812 > show sel atoms
    5813 
    5814 > hide sel atoms
    5815 
    5816 > select #1/K:101
    5817 
    5818 132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 4 models selected 
    5819 
    5820 > show sel atoms
    5821 
    5822 > select #1 &~/A-B:11-38/J-K:20-47/A:101/K:101
    5823 
    5824 17132 atoms, 17066 bonds, 282 pseudobonds, 2140 residues, 5 models selected 
    5825 
    5826 > select #1/A-B:11-38/J-K:20-47/A:101/K:101
    5827 
    5828 1868 atoms, 1908 bonds, 276 pseudobonds, 228 residues, 8 models selected 
    5829 
    5830 > save "/Users/drornoy/Desktop/LH2 helices/LH2 sphaeroides 7pbw 4hB design
    5831 > p_ap_ap_p.cxs"
    5832 
    5833 > show sel atoms
    5834 
    5835 > style sel sphere
    5836 
    5837 Changed 1868 atom styles 
    5838 
    5839 > color (#!1.1-2 & sel) forest green
    5840 
    5841 > color sel bychain
    5842 
    5843 > color sel byhetero
    5844 
    5845 > select #1/A:101/K:101
    5846 
    5847 264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    5848 
    5849 > color (#!1.1-2 & sel) forest green
    5850 
    5851 > color sel byhetero
    5852 
    5853 > select #1/A:101
    5854 
    5855 132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 4 models selected 
    5856 
    5857 > select clear
    5858 
    5859 > save "/Users/drornoy/Desktop/LH2 helices/LH2 4hB design p_ap_ap_p
    5860 > packing.cxs"
    5861 
    5862 > open "/Users/drornoy/Desktop/LH2 helices/ccbuilder_parallel_pentamer.pdb"
    5863 
    5864 Chain information for ccbuilder_parallel_pentamer.pdb #3 
    5865 --- 
    5866 Chain | Description 
    5867 A B C D E | No description available 
    5868  
    5869 
    5870 > select #1/A-B:11-38/J-K:20-47/A:101/K:101
    5871 
    5872 1868 atoms, 1908 bonds, 60 pseudobonds, 228 residues, 6 models selected 
    5873 
    5874 > hide sel atoms
    5875 
    5876 > select #1/A-B:11-38/J-K:20-47 &@CA
    5877 
    5878 224 atoms, 224 residues, 2 models selected 
    5879 
    5880 > show sel atoms
    5881 
    5882 > style sel ball
    5883 
    5884 Changed 224 atom styles 
    5885 
    5886 > select #3@CA
    5887 
    5888 140 atoms, 140 residues, 1 model selected 
    5889 
    5890 > select #3/A@CA
    5891 
    5892 28 atoms, 28 residues, 1 model selected 
    5893 
    5894 > align #3/A@CA #2/A@CA
    5895 
    5896 Missing required "to_atoms" argument 
    5897 
    5898 > align #3/A@CA toAtoms #2/A@CA
    5899 
    5900 RMSD between 28 atom pairs is 1.361 angstroms 
    5901 
    5902 > select up
    5903 
    5904 173 atoms, 172 bonds, 28 residues, 1 model selected 
    5905 
    5906 > select down
    5907 
    5908 28 atoms, 28 residues, 1 model selected 
    5909 
    5910 > select #3
    5911 
    5912 865 atoms, 860 bonds, 140 residues, 1 model selected 
    5913 
    5914 > hide sel atoms
    5915 
    5916 > select #3@CA
    5917 
    5918 140 atoms, 140 residues, 1 model selected 
    5919 
    5920 > show sel atoms
    5921 
    5922 > style sel ball
    5923 
    5924 Changed 140 atom styles 
    5925 
    5926 > select #3:1@CA
    5927 
    5928 5 atoms, 5 residues, 1 model selected 
    5929 
    5930 > show sel atoms
    5931 
    5932 > select #3:1
    5933 
    5934 55 atoms, 50 bonds, 5 residues, 1 model selected 
    5935 
    5936 > select #3:1 &~@C,N,O
    5937 
    5938 40 atoms, 20 bonds, 5 residues, 1 model selected 
    5939 
    5940 > show sel atoms
    5941 
    5942 > style sel stick
    5943 
    5944 Changed 40 atom styles 
    5945 
    5946 > color sel byhetero
    5947 
    5948 > select #3:1 &H
    5949 
    5950 15 atoms, 5 residues, 1 model selected 
    5951 
    5952 > hide sel atoms
    5953 
    5954 > hide #!1 models
    5955 
    5956 > show #!1 models
    5957 
    5958 > select #1/A:101/K:101
    5959 
    5960 264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    5961 
    5962 > show sel atoms
    5963 
    5964 > style sel stick
    5965 
    5966 Changed 264 atom styles 
    5967 
    5968 > hide sel atoms
    5969 
    5970 > select #1/A:31/D:101
    5971 
    5972 152 atoms, 160 bonds, 8 pseudobonds, 4 residues, 4 models selected 
    5973 
    5974 > select #1/A:31/D:101 &~backbone
    5975 
    5976 144 atoms, 152 bonds, 8 pseudobonds, 4 residues, 4 models selected 
    5977 
    5978 > show sel atoms
    5979 
    5980 > style sel stick
    5981 
    5982 Changed 144 atom styles 
    5983 
    5984 > select #1/A:31/D:101 &@CA
    5985 
    5986 2 atoms, 2 residues, 2 models selected 
    5987 
    5988 > hide #!1 models
    5989 
    5990 > hide #!3 models
    5991 
    5992 > show #!3 models
    5993 
    5994 > align #3/B@CA toAtoms #2/A@CA
    5995 
    5996 RMSD between 28 atom pairs is 1.359 angstroms 
    5997 
    5998 > align #3/A@CA toAtoms #2/A@CA
    5999 
    6000 RMSD between 28 atom pairs is 1.361 angstroms 
    6001 
    6002 > select #1/A:11-38/K:20-47 &@CA
    6003 
    6004 112 atoms, 108 pseudobonds, 112 residues, 4 models selected 
    6005 
    6006 > show #!1 models
    6007 
    6008 > hide #!2 models
    6009 
    6010 > hide #!1 models
    6011 
    6012 > show #!1 models
    6013 
    6014 > help help:user
    6015 
    6016 > align #3/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
    6017 
    6018 Pairing dropped 0 atoms and 746 reference atoms 
    6019 RMSD between 56 atom pairs is 3.686 angstroms 
    6020 
    6021 > align #3/B@CA toAtoms #1/A:11-38 matchAtomNames true
    6022 
    6023 Pairing dropped 0 atoms and 362 reference atoms 
    6024 RMSD between 28 atom pairs is 1.699 angstroms 
    6025 
    6026 > align #3/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
    6027 
    6028 Pairing dropped 0 atoms and 746 reference atoms 
    6029 RMSD between 56 atom pairs is 3.686 angstroms 
    6030 
    6031 > show #!2 models
    6032 
    6033 > hide #!1 models
    6034 
    6035 > align #3/B@CA/E@CA toAtoms #2/B/D matchAtomNames true
    6036 
    6037 Pairing dropped 0 atoms and 232 reference atoms 
    6038 RMSD between 56 atom pairs is 16.834 angstroms 
    6039 
    6040 > align #3/B@CA/E@CA toAtoms #2/B@CA/D@CA
    6041 
    6042 RMSD between 56 atom pairs is 16.834 angstroms 
    6043 
    6044 > align #3/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
    6045 
    6046 Pairing dropped 0 atoms and 746 reference atoms 
    6047 RMSD between 56 atom pairs is 3.686 angstroms 
    6048 
    6049 > open /Users/drornoy/Downloads/ccbuilder_model(3).pdb
    6050 
    6051 Chain information for ccbuilder_model(3).pdb #4 
    6052 --- 
    6053 Chain | Description 
    6054 A B C D E | No description available 
    6055  
    6056 
    6057 > align #4/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
    6058 
    6059 Pairing dropped 0 atoms and 746 reference atoms 
    6060 RMSD between 56 atom pairs is 4.352 angstroms 
    6061 
    6062 > hide #!3 models
    6063 
    6064 > select #3
    6065 
    6066 865 atoms, 860 bonds, 135 pseudobonds, 140 residues, 2 models selected 
    6067 
    6068 > hide #4#!2 atoms
    6069 
    6070 > select #3@CA
    6071 
    6072 140 atoms, 135 pseudobonds, 140 residues, 2 models selected 
    6073 
    6074 > show #4#!2 atoms
    6075 
    6076 > show #!3 models
    6077 
    6078 > hide #!3 models
    6079 
    6080 > show #!3 models
    6081 
    6082 > hide #!3 models
    6083 
    6084 > hide #4 models
    6085 
    6086 > hide #!2 models
    6087 
    6088 > show #4 models
    6089 
    6090 > select #4
    6091 
    6092 865 atoms, 860 bonds, 140 residues, 1 model selected 
    6093 
    6094 > hide sel atoms
    6095 
    6096 > select #4@CA
    6097 
    6098 140 atoms, 140 residues, 1 model selected 
    6099 
    6100 > show sel atoms
    6101 
    6102 > style sel ball
    6103 
    6104 Changed 140 atom styles 
    6105 
    6106 > show #!1 models
    6107 
    6108 > show #!2 models
    6109 
    6110 > hide #!4 models
    6111 
    6112 > hide #!2 models
    6113 
    6114 > show #!4 models
    6115 
    6116 > close #4
    6117 
    6118 > select #1/A:11/K:20&@CA
    6119 
    6120 4 atoms, 4 residues, 2 models selected 
    6121 
    6122 > select #1/A-B:11/J-K:20&@CA
    6123 
    6124 8 atoms, 8 residues, 2 models selected 
    6125 
    6126 > color sel magenta
    6127 
    6128 > show #!3 models
    6129 
    6130 > hide #!3 models
    6131 
    6132 > show #!3 models
    6133 
    6134 > select #1K:HIS
    6135 
    6136 Expected an objects specifier or a keyword 
    6137 
    6138 > select #1/K:HIS
    6139 
    6140 40 atoms, 40 bonds, 4 residues, 2 models selected 
    6141 
    6142 > select #1/K:HIS &~backbone
    6143 
    6144 24 atoms, 24 bonds, 4 residues, 2 models selected 
    6145 
    6146 > show sel atoms
    6147 
    6148 > style sel stick
    6149 
    6150 Changed 24 atom styles 
    6151 
    6152 > select #1/K:22 &~backbone
    6153 
    6154 12 atoms, 12 bonds, 2 residues, 2 models selected 
    6155 
    6156 > hide sel atoms
    6157 
    6158 > open /Users/drornoy/Downloads/ccbuilder_model(4).pdb
    6159 
    6160 Chain information for ccbuilder_model(4).pdb #4 
    6161 --- 
    6162 Chain | Description 
    6163 A B C D E | No description available 
    6164  
    6165 
    6166 > select #4
    6167 
    6168 850 atoms, 845 bonds, 140 residues, 1 model selected 
    6169 
    6170 > hide sel atoms
    6171 
    6172 > select #4@CA
    6173 
    6174 140 atoms, 140 residues, 1 model selected 
    6175 
    6176 > show sel atoms
    6177 
    6178 > style sel ball
    6179 
    6180 Changed 140 atom styles 
    6181 
    6182 > align #4/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
    6183 
    6184 Pairing dropped 0 atoms and 746 reference atoms 
    6185 RMSD between 56 atom pairs is 2.656 angstroms 
    6186 
    6187 > hide #!3 models
    6188 
    6189 > close #4
    6190 
    6191 > close #3
    6192 
    6193 > open /Users/drornoy/Downloads/ccbuilder_gfgff.pdb
    6194 
    6195 Chain information for ccbuilder_gfgff.pdb #3 
    6196 --- 
    6197 Chain | Description 
    6198 A B C D E | No description available 
    6199  
    6200 
    6201 > align #4/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
    6202 
    6203 Pairing dropped 0 atoms and 802 reference atoms 
    6204 No atoms paired for alignment 
    6205 
    6206 > align #3/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
    6207 
    6208 Pairing dropped 0 atoms and 746 reference atoms 
    6209 RMSD between 56 atom pairs is 2.656 angstroms 
    6210 
    6211 > select #3
    6212 
    6213 850 atoms, 845 bonds, 140 residues, 1 model selected 
    6214 
    6215 > hide sel atoms
    6216 
    6217 > style sel stick
    6218 
    6219 Changed 850 atom styles 
    6220 
    6221 > select #3@CA
    6222 
    6223 140 atoms, 140 residues, 1 model selected 
    6224 
    6225 > show sel atoms
    6226 
    6227 > style sel ball
    6228 
    6229 Changed 140 atom styles 
    6230 
    6231 > show #!2 models
    6232 
    6233 > select #2 &~baqckbone
    6234 
    6235 Expected a keyword 
    6236 
    6237 > select #2 &~backbone
    6238 
    6239 16 atoms, 14 bonds, 4 residues, 1 model selected 
    6240 
    6241 > select #2 &~backbone &~:HIS
    6242 
    6243 4 atoms, 4 bonds, 2 residues, 1 model selected 
    6244 
    6245 > select #2 &backbone
    6246 
    6247 560 atoms, 556 bonds, 112 residues, 1 model selected 
    6248 
    6249 > select #2 &backbone &~@CA
    6250 
    6251 448 atoms, 332 bonds, 112 residues, 1 model selected 
    6252 
    6253 > hide sel atoms
    6254 
    6255 > open /Users/drornoy/Downloads/ccbuilder_gggff.pdb
    6256 
    6257 Chain information for ccbuilder_gggff.pdb #4 
    6258 --- 
    6259 Chain | Description 
    6260 A B C D E | No description available 
    6261  
    6262 
    6263 > select #4
    6264 
    6265 850 atoms, 845 bonds, 140 residues, 1 model selected 
    6266 
    6267 > style sel stick
    6268 
    6269 Changed 850 atom styles 
    6270 
    6271 > hide sel atoms
    6272 
    6273 > select #4@CA
    6274 
    6275 140 atoms, 140 residues, 1 model selected 
    6276 
    6277 > show sel atoms
    6278 
    6279 > style sel ball
    6280 
    6281 Changed 140 atom styles 
    6282 
    6283 > align #4/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
    6284 
    6285 Pairing dropped 0 atoms and 746 reference atoms 
    6286 RMSD between 56 atom pairs is 3.689 angstroms 
    6287 
    6288 > align #4/B@CA toAtoms #1/A:11-38 matchAtomNames true
    6289 
    6290 Pairing dropped 0 atoms and 362 reference atoms 
    6291 RMSD between 28 atom pairs is 1.698 angstroms 
    6292 
    6293 > align #4/A@CA toAtoms #1/B:11-38 matchAtomNames true
    6294 
    6295 Pairing dropped 0 atoms and 362 reference atoms 
    6296 RMSD between 28 atom pairs is 1.710 angstroms 
    6297 
    6298 > hide #!3 models
    6299 
    6300 > align #4/A:8-28@CA toAtoms #1/B:18-38 matchAtomNames true
    6301 
    6302 Pairing dropped 0 atoms and 273 reference atoms 
    6303 RMSD between 21 atom pairs is 1.137 angstroms 
    6304 
    6305 > align #4/B@CA/E@CA toAtoms #1/A:11-38/K:20-47 matchAtomNames true
    6306 
    6307 Pairing dropped 0 atoms and 746 reference atoms 
    6308 RMSD between 56 atom pairs is 3.689 angstroms 
    6309 
    6310 > align #4/B@CA toAtoms #1/A:11-38 matchAtomNames true
    6311 
    6312 Pairing dropped 0 atoms and 362 reference atoms 
    6313 RMSD between 28 atom pairs is 1.698 angstroms 
    6314 
    6315 > align #4/A@CA toAtoms #1/B:11-38 matchAtomNames true
    6316 
    6317 Pairing dropped 0 atoms and 362 reference atoms 
    6318 RMSD between 28 atom pairs is 1.710 angstroms 
    6319 
    6320 > align #4/A@CA/E@CA toAtoms #1/B:11-38/K:20-47 matchAtomNames true
    6321 
    6322 Pairing dropped 0 atoms and 746 reference atoms 
    6323 RMSD between 56 atom pairs is 2.730 angstroms 
    6324 
    6325 > align #4/C@CA/E@CA toAtoms #1/J-K:20-47 matchAtomNames true
    6326 
    6327 Pairing dropped 0 atoms and 768 reference atoms 
    6328 RMSD between 56 atom pairs is 2.657 angstroms 
    6329 
    6330 > hide #!2 models
    6331 
    6332 > show #!2 models
    6333 
    6334 > hide #!1 models
    6335 
    6336 > align #4/E@CA toAtoms #2/D matchAtomNames true
    6337 
    6338 Pairing dropped 0 atoms and 118 reference atoms 
    6339 RMSD between 28 atom pairs is 1.361 angstroms 
    6340 
    6341 > close #3-4
    6342 
    6343 > open /Users/drornoy/Downloads/00001.92fe2b4c8c5f.allbb.pdb
    6344 
    6345 Summary of feedback from opening
    6346 /Users/drornoy/Downloads/00001.92fe2b4c8c5f.allbb.pdb 
    6347 --- 
    6348 warning | Ignored bad PDB record found on line 1 
    6349 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    6350 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    6351 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 1, 1],
    6352 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    6353 [4.450, -1.860, 2.650] 
    6354  
    6355 Chain information for 00001.92fe2b4c8c5f.allbb.pdb #3 
    6356 --- 
    6357 Chain | Description 
    6358 A B C D | No description available 
    6359  
    6360 
    6361 > align #3/A@CA/C-D@CA toAtoms #2/A@CA/C-D@CA each structure
    6362 
    6363 RMSD between 84 atom pairs is 14.016 angstroms 
    6364 
    6365 > select #3
    6366 
    6367 560 atoms, 556 bonds, 112 residues, 1 model selected 
    6368 
    6369 > hide sel cartoons
    6370 
    6371 > hide sel atoms
    6372 
    6373 > select #3@CA
    6374 
    6375 112 atoms, 112 residues, 1 model selected 
    6376 
    6377 > show sel atoms
    6378 
    6379 > style sel ball
    6380 
    6381 Changed 112 atom styles 
    6382 
    6383 > hide #!2 models
    6384 
    6385 > show #!1 models
    6386 
    6387 > hide #!3 models
    6388 
    6389 > show #!3 models
    6390 
    6391 > rename #3 "CCCP LH2 4HB p_ap_p_p.pdb"
    6392 
    6393 > save "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB p_ap_p_p.pdb" models
    6394 > #3
    6395 
    6396 > close #3
    6397 
    6398 > open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 4HB p_ap_p_p.pdb"
    6399 
    6400 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
    6401 4HB p_ap_p_p.pdb 
    6402 --- 
    6403 warning | Ignored bad PDB record found on line 1 
    6404 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    6405 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    6406 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 1, 1],
    6407 &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440], Z<SUB>aa'</SUB> =
    6408 [4.450, -1.860, 2.650] 
    6409  
    6410 Chain information for CCCP LH2 4HB p_ap_p_p.pdb #3 
    6411 --- 
    6412 Chain | Description 
    6413 A B C D | No description available 
    6414  
    6415 
    6416 > select #3
    6417 
    6418 560 atoms, 556 bonds, 112 residues, 1 model selected 
    6419 
    6420 > hide sel atoms
    6421 
    6422 > hide sel cartoons
    6423 
    6424 > select #3@CA
    6425 
    6426 112 atoms, 112 residues, 1 model selected 
    6427 
    6428 > show sel atoms
    6429 
    6430 > style sel ball
    6431 
    6432 Changed 112 atom styles 
    6433 
    6434 > hide #!1 models
    6435 
    6436 > hide #!3 models
    6437 
    6438 > show #!3 models
    6439 
    6440 > show #!2 models
    6441 
    6442 > select #3/A:21/D:21
    6443 
    6444 10 atoms, 8 bonds, 2 residues, 1 model selected 
    6445 
    6446 > ui tool show Rotamers
    6447 
    6448 > swapaa interactive sel HIS rotLib Dunbrack
    6449 
    6450 CCCP LH2 4HB p_ap_p_p.pdb #3/A GLY 21: phi -66.3, psi -41.4 trans 
    6451 Changed 288 bond radii 
    6452 CCCP LH2 4HB p_ap_p_p.pdb #!3/D GLY 21: phi -66.3, psi -41.4 trans 
    6453 Changed 288 bond radii 
    6454 
    6455 > swapaa #!3/A:21 HIS criteria 4 rotLib Dunbrack
    6456 
    6457 Using Dunbrack library 
    6458 CCCP LH2 4HB p_ap_p_p.pdb #!3/A GLY 21: phi -66.3, psi -41.4 trans 
    6459 Applying HIS rotamer (chi angles: -70.4 82.5) to CCCP LH2 4HB p_ap_p_p.pdb
    6460 #!3/A HIS 21 
    6461 
    6462 > swapaa #!3/D:21 HIS criteria 4 rotLib Dunbrack
    6463 
    6464 Using Dunbrack library 
    6465 CCCP LH2 4HB p_ap_p_p.pdb #!3/D GLY 21: phi -66.3, psi -41.4 trans 
    6466 Applying HIS rotamer (chi angles: -70.4 82.5) to CCCP LH2 4HB p_ap_p_p.pdb
    6467 #!3/D HIS 21 
    6468 
    6469 > hide #!2 models
    6470 
    6471 > show #!1 models
    6472 
    6473 > show #!2 models
    6474 
    6475 > hide #!2 models
    6476 
    6477 > hide #!3 models
    6478 
    6479 > select #3/A-B:27
    6480 
    6481 10 atoms, 8 bonds, 2 residues, 1 model selected 
    6482 
    6483 > show #!3 models
    6484 
    6485 > select #1/A-B:27
    6486 
    6487 24 atoms, 20 bonds, 4 residues, 2 models selected 
    6488 
    6489 > select #3/A:17/B:12
    6490 
    6491 10 atoms, 8 bonds, 2 residues, 1 model selected 
    6492 
    6493 > hide #!1 models
    6494 
    6495 > show #!2 models
    6496 
    6497 > swapaa interactive sel SER rotLib Dunbrack
    6498 
    6499 CCCP LH2 4HB p_ap_p_p.pdb #3/A GLY 17: phi -66.4, psi -41.3 trans 
    6500 Changed 9 bond radii 
    6501 CCCP LH2 4HB p_ap_p_p.pdb #!3/B GLY 12: phi -66.5, psi -41.3 trans 
    6502 Changed 9 bond radii 
    6503 
    6504 > swapaa #!3/A:17 SER criteria 3 rotLib Dunbrack
    6505 
    6506 Using Dunbrack library 
    6507 CCCP LH2 4HB p_ap_p_p.pdb #!3/A GLY 17: phi -66.4, psi -41.3 trans 
    6508 Applying SER rotamer (chi angles: -179.8) to CCCP LH2 4HB p_ap_p_p.pdb #!3/A
    6509 SER 17 
    6510 
    6511 > swapaa #!3/B:12 SER criteria 1 rotLib Dunbrack
    6512 
    6513 Using Dunbrack library 
    6514 CCCP LH2 4HB p_ap_p_p.pdb #!3/B GLY 12: phi -66.5, psi -41.3 trans 
    6515 Applying SER rotamer (chi angles: -65.9) to CCCP LH2 4HB p_ap_p_p.pdb #!3/B
    6516 SER 12 
    6517 
    6518 > select #3 &~@CA
    6519 
    6520 464 atoms, 346 bonds, 112 residues, 1 model selected 
    6521 
    6522 > style sel stick
    6523 
    6524 Changed 464 atom styles 
    6525 
    6526 > select clear
    6527 
    6528 > show #!1 models
    6529 
    6530 > hide #!2 models
    6531 
    6532 > view
    6533 
    6534 > select #1/D
    6535 
    6536 1214 atoms, 1216 bonds, 18 pseudobonds, 138 residues, 4 models selected 
    6537 
    6538 > hide sel atoms
    6539 
    6540 > select #2-3:1@CA
    6541 
    6542 8 atoms, 8 residues, 2 models selected 
    6543 
    6544 > show #!2 models
    6545 
    6546 > color sel magenta
    6547 
    6548 > select clear
    6549 
    6550 > select #1/A:101/K:101
    6551 
    6552 264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    6553 
    6554 > show sel atoms
    6555 
    6556 > hide #!2 models
    6557 
    6558 > save "/Users/drornoy/Desktop/LH2 helices/LH2 4hB design p_ap_p_p.cxs"
    6559 
    6560 > hide #!1 models
    6561 
    6562 > color #!3 bychain
    6563 
    6564 > open /Users/drornoy/Downloads/00001.3eeab1dc8ba6.allbb.pdb
    6565 
    6566 Summary of feedback from opening
    6567 /Users/drornoy/Downloads/00001.3eeab1dc8ba6.allbb.pdb 
    6568 --- 
    6569 warning | Ignored bad PDB record found on line 1 
    6570 REMARK N = [5], L = [28], R<SUB>0</SUB> = 8.600, R<SUB>1</SUB> = 2.278,
    6571 &omega;<SUB>0</SUB> = 0.640, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    6572 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190, -9], ori = [0, 1, 1,
    6573 0], &Delta;&phi;<SUB>0</SUB> = [67.587, 32.977, 178.720, 199.500],
    6574 Z<SUB>aa'</SUB> = [4.450, -1.860, 2.650, 0] 
    6575  
    6576 Chain information for 00001.3eeab1dc8ba6.allbb.pdb #4 
    6577 --- 
    6578 Chain | Description 
    6579 A B C D E | No description available 
    6580  
    6581 
    6582 > align #4/A@CA/C-D@CA toAtoms #2/A@CA/C-D@CA each structure
    6583 
    6584 RMSD between 84 atom pairs is 16.059 angstroms 
    6585 
    6586 > align #4/A@CA toAtoms #3/A@CA each structure
    6587 
    6588 RMSD between 28 atom pairs is 0.148 angstroms 
    6589 
    6590 > close #4
    6591 
    6592 > open /Users/drornoy/Downloads/00001.3eeab1dc8ba6.allbb.pdb
    6593 
    6594 Summary of feedback from opening
    6595 /Users/drornoy/Downloads/00001.3eeab1dc8ba6.allbb.pdb 
    6596 --- 
    6597 warning | Ignored bad PDB record found on line 1 
    6598 REMARK N = [5], L = [28], R<SUB>0</SUB> = 8.600, R<SUB>1</SUB> = 2.278,
    6599 &omega;<SUB>0</SUB> = 0.640, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    6600 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190, -9], ori = [0, 1, 1,
    6601 0], &Delta;&phi;<SUB>0</SUB> = [67.587, 32.977, 178.720, 199.500],
    6602 Z<SUB>aa'</SUB> = [4.450, -1.860, 2.650, 0] 
    6603  
    6604 Chain information for 00001.3eeab1dc8ba6.allbb.pdb #4 
    6605 --- 
    6606 Chain | Description 
    6607 A B C D E | No description available 
    6608  
    6609 
    6610 > align #4/A@CA toAtoms #3/A@CA each structure
    6611 
    6612 RMSD between 28 atom pairs is 0.148 angstroms 
    6613 
    6614 > close #4
    6615 
    6616 > open /Users/drornoy/Downloads/00001.ccce58be689e.allbb.pdb
    6617 
    6618 Summary of feedback from opening
    6619 /Users/drornoy/Downloads/00001.ccce58be689e.allbb.pdb 
    6620 --- 
    6621 warning | Ignored bad PDB record found on line 1 
    6622 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    6623 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    6624 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 1, 1],
    6625 &Delta;&phi;<SUB>0</SUB> = [63.173, 252, 141.440], Z<SUB>aa'</SUB> = [4.450,
    6626 -1.860, 2.650] 
    6627  
    6628 Chain information for 00001.ccce58be689e.allbb.pdb #4 
    6629 --- 
    6630 Chain | Description 
    6631 A B C D | No description available 
    6632  
    6633 
    6634 > align #4/A@CA toAtoms #3/A@CA each structure
    6635 
    6636 RMSD between 28 atom pairs is 0.000 angstroms 
    6637 
    6638 > close #4
    6639 
    6640 > open /Users/drornoy/Downloads/00001.f8a7059e5a79.allbb.pdb
    6641 
    6642 Summary of feedback from opening
    6643 /Users/drornoy/Downloads/00001.f8a7059e5a79.allbb.pdb 
    6644 --- 
    6645 warning | Ignored bad PDB record found on line 1 
    6646 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    6647 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    6648 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 1, 1],
    6649 &Delta;&phi;<SUB>0</SUB> = [63.173, 258.040, 141.440], Z<SUB>aa'</SUB> =
    6650 [4.450, -1.860, 2.650] 
    6651  
    6652 Chain information for 00001.f8a7059e5a79.allbb.pdb #4 
    6653 --- 
    6654 Chain | Description 
    6655 A B C D | No description available 
    6656  
    6657 
    6658 > align #4/A@CA toAtoms #3/A@CA each structure
    6659 
    6660 RMSD between 28 atom pairs is 0.000 angstroms 
    6661 
    6662 > open /Users/drornoy/Downloads/00001.070ba0498f7b.allbb.pdb
    6663 
    6664 Summary of feedback from opening
    6665 /Users/drornoy/Downloads/00001.070ba0498f7b.allbb.pdb 
    6666 --- 
    6667 warning | Ignored bad PDB record found on line 1 
    6668 REMARK N = [4], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    6669 &omega;<SUB>0</SUB> = 0.490, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    6670 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190], ori = [0, 1, 1],
    6671 &Delta;&phi;<SUB>0</SUB> = [63.173, -141, 141.440], Z<SUB>aa'</SUB> = [4.450,
    6672 -1.860, 2.650] 
    6673  
    6674 Chain information for 00001.070ba0498f7b.allbb.pdb #5 
    6675 --- 
    6676 Chain | Description 
    6677 A B C D | No description available 
    6678  
    6679 
    6680 > align #5/A@CA toAtoms #3/A@CA each structure
    6681 
    6682 RMSD between 28 atom pairs is 0.000 angstroms 
    6683 
    6684 > close #4-5
    6685 
    6686 > open /Users/drornoy/Downloads/00001.1f40c7c7f82b.allbb.pdb
    6687 
    6688 Summary of feedback from opening
    6689 /Users/drornoy/Downloads/00001.1f40c7c7f82b.allbb.pdb 
    6690 --- 
    6691 warning | Ignored bad PDB record found on line 1 
    6692 REMARK N = [5], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    6693 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    6694 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190, -9], ori = [0, 1, 1,
    6695 0], &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440, -141],
    6696 Z<SUB>aa'</SUB> = [4.450, -1.860, 2.650, 0] 
    6697  
    6698 Chain information for 00001.1f40c7c7f82b.allbb.pdb #4 
    6699 --- 
    6700 Chain | Description 
    6701 A B C D E | No description available 
    6702  
    6703 
    6704 > align #4/A@CA toAtoms #3/A@CA each structure
    6705 
    6706 RMSD between 28 atom pairs is 0.074 angstroms 
    6707 
    6708 > select up
    6709 
    6710 2152 atoms, 2140 bonds, 16 pseudobonds, 274 residues, 4 models selected 
    6711 
    6712 > select up
    6713 
    6714 19000 atoms, 18990 bonds, 306 pseudobonds, 2368 residues, 4 models selected 
    6715 
    6716 > select #4 &~@CA
    6717 
    6718 560 atoms, 415 bonds, 140 residues, 1 model selected 
    6719 
    6720 > hide sel atoms
    6721 
    6722 > select #4
    6723 
    6724 700 atoms, 695 bonds, 135 pseudobonds, 140 residues, 2 models selected 
    6725 
    6726 > style sel stick
    6727 
    6728 Changed 700 atom styles 
    6729 
    6730 > select #4@CA
    6731 
    6732 140 atoms, 135 pseudobonds, 140 residues, 2 models selected 
    6733 
    6734 > style sel ball
    6735 
    6736 Changed 140 atom styles 
    6737 
    6738 > hide #!3 models
    6739 
    6740 > show #!1 models
    6741 
    6742 > hide #!1 models
    6743 
    6744 > show #!3 models
    6745 
    6746 > ui tool show "Side View"
    6747 
    6748 > select clear
    6749 
    6750 > select #3/D:4@CA
    6751 
    6752 1 atom, 1 residue, 1 model selected 
    6753 
    6754 > select add #4/E:22@CA
    6755 
    6756 2 atoms, 2 residues, 2 models selected 
    6757 
    6758 > select #4/D:4@CA/E:22@CA/C:7@CA
    6759 
    6760 3 atoms, 3 residues, 1 model selected 
    6761 
    6762 > ui tool show Axes/Planes/Centroids
    6763 
    6764 > define plane sel
    6765 
    6766 Plane 'plane' placed at [ -5.76433333 3.614 -15.43966667] with normal
    6767 [-0.10035948 0.0033457 0.99494562] and radius 13.0 
    6768 
    6769 > select #4/D:4@CA/E:22@CA
    6770 
    6771 2 atoms, 2 residues, 1 model selected 
    6772 
    6773 > distance #4/D:4@CA #4/E:22@CA
    6774 
    6775 Distance between 00001.1f40c7c7f82b.allbb.pdb #4/D GLY 4 CA and /E GLY 22 CA:
    6776 11.481Å 
    6777 
    6778 > select #4/C:7@CA/E:22@CA
    6779 
    6780 2 atoms, 2 residues, 1 model selected 
    6781 
    6782 > distance #4/C:7@CA #4/E:22@CA
    6783 
    6784 Distance between 00001.1f40c7c7f82b.allbb.pdb #4/C GLY 7 CA and /E GLY 22 CA:
    6785 15.117Å 
    6786 
    6787 > close #4.2
    6788 
    6789 > ~distance #4/C:7@CA #4/E:22@CA
    6790 
    6791 > ~distance #4/D:4@CA #4/E:22@CA
    6792 
    6793 > rename #4 "CCCP LH2 5HB p_ap_p_p_ap.pdb"
    6794 
    6795 > save "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 5HB p_ap_p_p_ap.pdb"
    6796 > models #4
    6797 
    6798 > hide #!4 models
    6799 
    6800 > show #!4 models
    6801 
    6802 > hide #!4 models
    6803 
    6804 > show #!4 models
    6805 
    6806 > hide #!4 models
    6807 
    6808 > show #!4 models
    6809 
    6810 > combine #4
    6811 
    6812 > select #5/A-D
    6813 
    6814 560 atoms, 556 bonds, 108 pseudobonds, 112 residues, 2 models selected 
    6815 
    6816 > delete atoms (#!5 & sel)
    6817 
    6818 > delete bonds (#!5 & sel)
    6819 
    6820 > combine #3#5
    6821 
    6822 > hide #!5 models
    6823 
    6824 > hide #!4 models
    6825 
    6826 > hide #!3 models
    6827 
    6828 > close #4-5
    6829 
    6830 > rename #6 "CCCP LH2 5HB p_ap_p_p_ap.pdb"
    6831 
    6832 > combine #6 modelId #4
    6833 
    6834 > close #6
    6835 
    6836 > rename #4 "CCCP LH2 5HB p_ap_p_p_ap.pdb"
    6837 
    6838 > save "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 5HB p_ap_p_p_ap.pdb"
    6839 > models #4
    6840 
    6841 > close #4
    6842 
    6843 > open "/Users/drornoy/Desktop/LH2 helices/CCCP LH2 5HB p_ap_p_p_ap.pdb"
    6844 
    6845 Summary of feedback from opening /Users/drornoy/Desktop/LH2 helices/CCCP LH2
    6846 5HB p_ap_p_p_ap.pdb 
    6847 --- 
    6848 warning | Ignored bad PDB record found on line 1 
    6849 REMARK N = [5], L = [28], R<SUB>0</SUB> = 11.365, R<SUB>1</SUB> = 2.278,
    6850 &omega;<SUB>0</SUB> = 0.487, &omega;<SUB>1</SUB> = 97.581, &alpha; = 3.742,
    6851 &phi;<SUB>1</SUB> = [15.855, 118.637, 115.010, 12.190, -9], ori = [0, 1, 1,
    6852 0], &Delta;&phi;<SUB>0</SUB> = [63.173, -78.045, 141.440, -141],
    6853 Z<SUB>aa'</SUB> = [4.450, -1.860, 2.650, 0] 
    6854  
    6855 Chain information for CCCP LH2 5HB p_ap_p_p_ap.pdb #4 
    6856 --- 
    6857 Chain | Description 
    6858 A | No description available 
    6859 B | No description available 
    6860 C E | No description available 
    6861 D | No description available 
    6862  
    6863 
    6864 > show #!3 models
    6865 
    6866 > hide #!3 models
    6867 
    6868 > select #4
    6869 
    6870 716 atoms, 713 bonds, 140 residues, 1 model selected 
    6871 
    6872 > hide sel atoms
    6873 
    6874 > show sel atoms
    6875 
    6876 > style sel stick
    6877 
    6878 Changed 716 atom styles 
    6879 
    6880 > hide sel atoms
    6881 
    6882 > select #4@CA
    6883 
    6884 140 atoms, 140 residues, 1 model selected 
    6885 
    6886 > style sel stick
    6887 
    6888 Changed 140 atom styles 
    6889 
    6890 > style sel ball
    6891 
    6892 Changed 140 atom styles 
    6893 
    6894 > show sel atoms
    6895 
    6896 > color sel bychain
    6897 
    6898 > show #!3 models
    6899 
    6900 > hide #!3 models
    6901 
    6902 > show #!3 models
    6903 
    6904 > hide #!3 models
    6905 
    6906 > show #!3 models
    6907 
    6908 > hide #!3 models
    6909 
    6910 > show #!3 models
    6911 
    6912 > hide #!3 models
    6913 
    6914 > show #!3 models
    6915 
    6916 > hide #!3 models
    6917 
    6918 > show #!3 models
    6919 
    6920 > hide #!3 models
    6921 
    6922 > show #!3 models
    6923 
    6924 > select #4:
    6925 
    6926 Expected an objects specifier or a keyword 
    6927 
    6928 > select #4:HIS,SER
    6929 
    6930 36 atoms, 34 bonds, 4 residues, 1 model selected 
    6931 
    6932 > select #4:HIS,SER &~backbone
    6933 
    6934 16 atoms, 14 bonds, 4 residues, 1 model selected 
    6935 
    6936 > show sel atoms
    6937 
    6938 > select clear
    6939 
    6940 > show #!1 models
    6941 
    6942 > save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap.cxs"
    6943 
    6944 > select #1/A-B:11-38/J-K:20-47/A:101/K:101
    6945 
    6946 1868 atoms, 1908 bonds, 276 pseudobonds, 228 residues, 8 models selected 
    6947 
    6948 > color sel byhetero
    6949 
    6950 > style sel sphere
    6951 
    6952 Changed 1868 atom styles 
    6953 
    6954 > show sel atoms
    6955 
    6956 > color sel byhetero
    6957 
    6958 > select #1/A:101/K:101 &@C[1][0123456789],C[0123456789],C20
    6959 
    6960 80 atoms, 76 bonds, 4 residues, 2 models selected 
    6961 
    6962 > hide sel atoms
    6963 
    6964 > select #4/E
    6965 
    6966 140 atoms, 139 bonds, 27 pseudobonds, 28 residues, 2 models selected 
    6967 
    6968 > show sel atoms
    6969 
    6970 > style sel sphere
    6971 
    6972 Changed 140 atom styles 
    6973 
    6974 > select #1/A-B:11-38/J-K:20-47/A:101/K:101 &backbone &~CA
    6975 
    6976 Expected a keyword 
    6977 
    6978 > select #1/A-B:11-38/J-K:20-47/A:101/K:101 &backbone &~@CA
    6979 
    6980 672 atoms, 440 bonds, 224 residues, 2 models selected 
    6981 
    6982 > color sel light gray
    6983 
    6984 > select #1
    6985 
    6986 19000 atoms, 18990 bonds, 422 pseudobonds, 2368 residues, 7 models selected 
    6987 
    6988 > color sel byhetero
    6989 
    6990 > select #4
    6991 
    6992 716 atoms, 713 bonds, 108 pseudobonds, 140 residues, 2 models selected 
    6993 
    6994 > color sel byhetero
    6995 
    6996 > hide #!1 models
    6997 
    6998 > show #!1 models
    6999 
    7000 > save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap
    7001 > packing.cxs"
    7002 
    7003 > select #1/A:101/K:101 &~@C[1][0123456789],C[0123456789],C20
    7004 
    7005 184 atoms, 200 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    7006 
    7007 > ui tool show Contacts
    7008 
    7009 > contacts sel restrict #1/A-B/:11-38/J-K:20-47 resSeparation 5
    7010 > ignoreHiddenModels true select true makePseudobonds false reveal true log
    7011 > true
    7012 
    7013 Invalid "restrict" argument: Expected one of 'any', 'both', or 'cross' or an
    7014 atoms specifier 
    7015 
    7016 > contacts sel restrict #1/A-B/11-38/J-K:20-47 resSeparation 5
    7017 > ignoreHiddenModels true select true makePseudobonds false reveal true log
    7018 > true
    7019    
    7020    
    7021     Allowed overlap: -0.4
    7022     H-bond overlap reduction: 0.4
    7023     Ignore contacts between atoms separated by 4 bonds or less
    7024     Ignore contacts between atoms in residues less than 5 apart in sequence
    7025     Detect intra-residue contacts: False
    7026     Detect intra-molecule contacts: True
    7027    
    7028     304 contacts
    7029                     atom1                                   atom2                   overlap  distance
    7030     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1    0.497    3.143
    7031     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1    0.497    3.143
    7032     LH2_Sphaeroides.pdb #1.2/K BCL 101 ND   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2    0.350    2.930
    7033     LH2_Sphaeroides.pdb #1.1/K BCL 101 ND   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2    0.350    2.930
    7034     LH2_Sphaeroides.pdb #1.2/K BCL 101 ND   LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1    0.329    3.071
    7035     LH2_Sphaeroides.pdb #1.1/K BCL 101 ND   LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1    0.329    3.071
    7036     LH2_Sphaeroides.pdb #1.2/A BCL 101 MG   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2    0.309    1.901
    7037     LH2_Sphaeroides.pdb #1.1/A BCL 101 MG   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2    0.309    1.901
    7038     LH2_Sphaeroides.pdb #1.2/K BCL 101 MG   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2    0.309    1.901
    7039     LH2_Sphaeroides.pdb #1.1/K BCL 101 MG   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2    0.309    1.901
    7040     LH2_Sphaeroides.pdb #1.2/A BCL 101 NA   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2    0.244    3.036
    7041     LH2_Sphaeroides.pdb #1.1/A BCL 101 NA   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2    0.244    3.036
    7042     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2    0.206    3.314
    7043     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2    0.206    3.314
    7044     LH2_Sphaeroides.pdb #1.2/A BCL 101 ND   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2    0.163    3.117
    7045     LH2_Sphaeroides.pdb #1.1/A BCL 101 ND   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2    0.163    3.117
    7046     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/K BCL 101 CHB   0.150    3.490
    7047     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/K BCL 101 CHB   0.150    3.490
    7048     LH2_Sphaeroides.pdb #1.2/K BCL 101 NA   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2    0.133    3.147
    7049     LH2_Sphaeroides.pdb #1.1/K BCL 101 NA   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2    0.133    3.147
    7050     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B ALA 23 O      0.124    3.176
    7051     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B ALA 23 O      0.124    3.176
    7052     LH2_Sphaeroides.pdb #1.2/A BCL 101 NA   LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1    0.121    3.279
    7053     LH2_Sphaeroides.pdb #1.1/A BCL 101 NA   LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1    0.121    3.279
    7054     LH2_Sphaeroides.pdb #1.2/A BCL 101 C3D  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB     0.102    3.388
    7055     LH2_Sphaeroides.pdb #1.1/A BCL 101 C3D  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB     0.102    3.388
    7056     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J MET 35 CG     0.098    3.662
    7057     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J MET 35 CG     0.098    3.662
    7058     LH2_Sphaeroides.pdb #1.2/K BCL 101 CHD  LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD   0.094    3.546
    7059     LH2_Sphaeroides.pdb #1.1/K BCL 101 CHD  LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD   0.094    3.546
    7060     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1    0.093    3.547
    7061     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1    0.093    3.547
    7062     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 ND1    0.089    3.431
    7063     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 ND1    0.089    3.431
    7064     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B BCL 101 C1D   0.082    3.408
    7065     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B BCL 101 C1D   0.082    3.408
    7066     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/A TYR 45 CD1    0.071    3.569
    7067     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/A TYR 45 CD1    0.071    3.569
    7068     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1    0.056    3.704
    7069     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1    0.056    3.704
    7070     LH2_Sphaeroides.pdb #1.2/K BCL 101 C1D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2    0.055    3.435
    7071     LH2_Sphaeroides.pdb #1.1/K BCL 101 C1D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2    0.055    3.435
    7072     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1    0.049    3.251
    7073     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1    0.049    3.251
    7074     LH2_Sphaeroides.pdb #1.2/K BCL 101 NA   LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1    0.044    3.356
    7075     LH2_Sphaeroides.pdb #1.1/K BCL 101 NA   LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1    0.044    3.356
    7076     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ     0.042    3.598
    7077     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ     0.042    3.598
    7078     LH2_Sphaeroides.pdb #1.2/A BCL 101 NC   LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2    0.039    3.361
    7079     LH2_Sphaeroides.pdb #1.1/A BCL 101 NC   LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2    0.039    3.361
    7080     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B BCL 101 ND    0.037    3.483
    7081     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B BCL 101 ND    0.037    3.483
    7082     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/K BCL 101 C4A   0.021    3.469
    7083     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/K BCL 101 C4A   0.021    3.469
    7084     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAA  LH2_Sphaeroides.pdb #1.2/A SER 27 OG     0.014    3.326
    7085     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAA  LH2_Sphaeroides.pdb #1.1/A SER 27 OG     0.014    3.326
    7086     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMA  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C13   0.013    3.747
    7087     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMA  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C13   0.013    3.747
    7088     LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1    0.007    3.363
    7089     LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1    0.007    3.363
    7090     LH2_Sphaeroides.pdb #1.2/A BCL 101 CHB  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C8    -0.003    3.643
    7091     LH2_Sphaeroides.pdb #1.1/A BCL 101 CHB  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C8    -0.003    3.643
    7092     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAD  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB     -0.003    3.493
    7093     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAD  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB     -0.003    3.493
    7094     LH2_Sphaeroides.pdb #1.2/K BCL 101 CHD  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2    -0.009    3.649
    7095     LH2_Sphaeroides.pdb #1.1/K BCL 101 CHD  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2    -0.009    3.649
    7096     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/B SER 27 CB     -0.010    3.310
    7097     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/B SER 27 CB     -0.010    3.310
    7098     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBA  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C16   -0.010    3.650
    7099     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBA  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C16   -0.010    3.650
    7100     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMA  LH2_Sphaeroides.pdb #1.2/J MET 35 CE     -0.027    3.787
    7101     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA  LH2_Sphaeroides.pdb #1.1/J MET 35 CE     -0.027    3.787
    7102     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2    -0.034    3.794
    7103     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2    -0.034    3.794
    7104     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBA  LH2_Sphaeroides.pdb #1.2/B BCL 102 C4    -0.040    3.800
    7105     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBA  LH2_Sphaeroides.pdb #1.1/B BCL 102 C4    -0.040    3.800
    7106     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2    -0.041    3.681
    7107     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2    -0.041    3.681
    7108     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1    -0.046    3.226
    7109     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1    -0.046    3.226
    7110     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB     -0.048    3.348
    7111     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB     -0.048    3.348
    7112     LH2_Sphaeroides.pdb #1.2/A BCL 101 NB   LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2    -0.050    3.450
    7113     LH2_Sphaeroides.pdb #1.1/A BCL 101 NB   LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2    -0.050    3.450
    7114     LH2_Sphaeroides.pdb #1.2/A BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1    -0.050    3.810
    7115     LH2_Sphaeroides.pdb #1.1/A BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1    -0.050    3.810
    7116     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ     -0.051    3.691
    7117     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ     -0.051    3.691
    7118     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 44 CE2    -0.056    3.236
    7119     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 44 CE2    -0.056    3.236
    7120     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B BCL 101 C2D   -0.058    3.548
    7121     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B BCL 101 C2D   -0.058    3.548
    7122     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 OH     -0.070    2.550
    7123     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 OH     -0.070    2.550
    7124     LH2_Sphaeroides.pdb #1.2/K BCL 101 O2A  LH2_Sphaeroides.pdb #1.2/B BCL 102 C4    -0.070    3.410
    7125     LH2_Sphaeroides.pdb #1.1/K BCL 101 O2A  LH2_Sphaeroides.pdb #1.1/B BCL 102 C4    -0.070    3.410
    7126     LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ     -0.072    3.292
    7127     LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ     -0.072    3.292
    7128     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2    -0.075    3.565
    7129     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2    -0.075    3.565
    7130     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J MET 35 CB     -0.080    3.840
    7131     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J MET 35 CB     -0.080    3.840
    7132     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/J ALA 36 CB     -0.083    3.383
    7133     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/J ALA 36 CB     -0.083    3.383
    7134     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2    -0.085    3.725
    7135     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2    -0.085    3.725
    7136     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CE2    -0.085    3.725
    7137     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CE2    -0.085    3.725
    7138     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 44 OH     -0.086    2.566
    7139     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 44 OH     -0.086    2.566
    7140     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBA  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C15   -0.086    3.726
    7141     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBA  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C15   -0.086    3.726
    7142     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/B BCL 101 CBD   -0.089    3.389
    7143     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/B BCL 101 CBD   -0.089    3.389
    7144     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J MET 35 SD     -0.094    3.744
    7145     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J MET 35 SD     -0.094    3.744
    7146     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B SER 27 CB     -0.098    3.858
    7147     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B SER 27 CB     -0.098    3.858
    7148     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 ND1    -0.104    3.624
    7149     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 ND1    -0.104    3.624
    7150     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/K BCL 101 NA    -0.104    3.624
    7151     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/K BCL 101 NA    -0.104    3.624
    7152     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/K PHE 32 CD1    -0.106    3.286
    7153     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/K PHE 32 CD1    -0.106    3.286
    7154     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C9    -0.108    3.748
    7155     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C9    -0.108    3.748
    7156     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/K BCL 101 C1B   -0.109    3.599
    7157     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/K BCL 101 C1B   -0.109    3.599
    7158     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/K GLY 33 CA     -0.110    3.410
    7159     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/K GLY 33 CA     -0.110    3.410
    7160     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/K BCL 101 NC    -0.114    3.634
    7161     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/K BCL 101 NC    -0.114    3.634
    7162     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA     -0.115    3.415
    7163     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA     -0.115    3.415
    7164     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1    -0.117    3.757
    7165     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1    -0.117    3.757
    7166     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1    -0.120    3.880
    7167     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1    -0.120    3.880
    7168     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B BCL 101 C4D   -0.122    3.612
    7169     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B BCL 101 C4D   -0.122    3.612
    7170     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 43 CB     -0.123    3.883
    7171     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 43 CB     -0.123    3.883
    7172     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMA  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C12   -0.126    3.616
    7173     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMA  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C12   -0.126    3.616
    7174     LH2_Sphaeroides.pdb #1.2/K BCL 101 C1D  LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD   -0.139    3.629
    7175     LH2_Sphaeroides.pdb #1.1/K BCL 101 C1D  LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD   -0.139    3.629
    7176     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMA  LH2_Sphaeroides.pdb #1.2/B BCL 102 C6    -0.141    3.901
    7177     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA  LH2_Sphaeroides.pdb #1.1/B BCL 102 C6    -0.141    3.901
    7178     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J ALA 36 N      -0.141    3.661
    7179     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J ALA 36 N      -0.141    3.661
    7180     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 OH     -0.145    3.485
    7181     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 OH     -0.145    3.485
    7182     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/A SER 27 CB     -0.146    3.446
    7183     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/A SER 27 CB     -0.146    3.446
    7184     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1    -0.148    3.328
    7185     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1    -0.148    3.328
    7186     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/K BCL 101 CMA   -0.150    3.910
    7187     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/K BCL 101 CMA   -0.150    3.910
    7188     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 CA     -0.157    3.917
    7189     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 CA     -0.157    3.917
    7190     LH2_Sphaeroides.pdb #1.2/A BCL 101 NB   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2    -0.157    3.037
    7191     LH2_Sphaeroides.pdb #1.1/A BCL 101 NB   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2    -0.157    3.037
    7192     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2    -0.159    3.919
    7193     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2    -0.159    3.919
    7194     LH2_Sphaeroides.pdb #1.2/K BCL 101 CAD  LH2_Sphaeroides.pdb #1.2/B BCL 101 CBD   -0.160    3.650
    7195     LH2_Sphaeroides.pdb #1.1/K BCL 101 CAD  LH2_Sphaeroides.pdb #1.1/B BCL 101 CBD   -0.160    3.650
    7196     LH2_Sphaeroides.pdb #1.2/K BCL 101 O2A  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C18   -0.161    3.501
    7197     LH2_Sphaeroides.pdb #1.1/K BCL 101 O2A  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C18   -0.161    3.501
    7198     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A VAL 34 CB     -0.171    3.931
    7199     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A VAL 34 CB     -0.171    3.931
    7200     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B BCL 101 C3D   -0.178    3.668
    7201     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B BCL 101 C3D   -0.178    3.668
    7202     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAB  LH2_Sphaeroides.pdb #1.2/A TYR 45 OH     -0.178    3.248
    7203     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAB  LH2_Sphaeroides.pdb #1.1/A TYR 45 OH     -0.178    3.248
    7204     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA     -0.185    3.945
    7205     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA     -0.185    3.945
    7206     LH2_Sphaeroides.pdb #1.2/K BCL 101 CHA  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1    -0.187    3.557
    7207     LH2_Sphaeroides.pdb #1.1/K BCL 101 CHA  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1    -0.187    3.557
    7208     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1    -0.188    3.948
    7209     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1    -0.188    3.948
    7210     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CE1    -0.192    3.832
    7211     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CE1    -0.192    3.832
    7212     LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1    -0.193    3.413
    7213     LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1    -0.193    3.413
    7214     LH2_Sphaeroides.pdb #1.2/A BCL 101 CHC  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2    -0.197    3.717
    7215     LH2_Sphaeroides.pdb #1.1/A BCL 101 CHC  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2    -0.197    3.717
    7216     LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.2/A SER 27 CB     -0.198    3.688
    7217     LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.1/A SER 27 CB     -0.198    3.688
    7218     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/A TRP 40 CH2    -0.200    3.840
    7219     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/A TRP 40 CH2    -0.200    3.840
    7220     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/K BCL 101 CBB   -0.207    3.967
    7221     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/K BCL 101 CBB   -0.207    3.967
    7222     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/K BCL 101 C1C   -0.208    3.698
    7223     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/K BCL 101 C1C   -0.208    3.698
    7224     LH2_Sphaeroides.pdb #1.2/K BCL 101 NC   LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2    -0.221    3.621
    7225     LH2_Sphaeroides.pdb #1.1/K BCL 101 NC   LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2    -0.221    3.621
    7226     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J ALA 36 CB     -0.225    3.985
    7227     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J ALA 36 CB     -0.225    3.985
    7228     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1    -0.227    3.867
    7229     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1    -0.227    3.867
    7230     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 O      -0.239    3.539
    7231     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 O      -0.239    3.539
    7232     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/K BCL 101 CHC   -0.246    3.886
    7233     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/K BCL 101 CHC   -0.246    3.886
    7234     LH2_Sphaeroides.pdb #1.2/K BCL 101 C1A  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1    -0.258    3.628
    7235     LH2_Sphaeroides.pdb #1.1/K BCL 101 C1A  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1    -0.258    3.628
    7236     LH2_Sphaeroides.pdb #1.2/K BCL 101 NC   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2    -0.259    3.139
    7237     LH2_Sphaeroides.pdb #1.1/K BCL 101 NC   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2    -0.259    3.139
    7238     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C3    -0.259    4.019
    7239     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C3    -0.259    4.019
    7240     LH2_Sphaeroides.pdb #1.2/A BCL 101 C2D  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB     -0.259    3.749
    7241     LH2_Sphaeroides.pdb #1.1/A BCL 101 C2D  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB     -0.259    3.749
    7242     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CD2    -0.262    3.902
    7243     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2    -0.262    3.902
    7244     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/B SER 27 OG     -0.269    2.749
    7245     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/B SER 27 OG     -0.269    2.749
    7246     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 39 C      -0.270    3.760
    7247     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 39 C      -0.270    3.760
    7248     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMA  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C11   -0.281    3.921
    7249     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMA  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C11   -0.281    3.921
    7250     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 CG     -0.292    3.782
    7251     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 CG     -0.292    3.782
    7252     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 44 CZ     -0.293    3.323
    7253     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 44 CZ     -0.293    3.323
    7254     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1    -0.296    4.056
    7255     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1    -0.296    4.056
    7256     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C10   -0.301    3.941
    7257     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C10   -0.301    3.941
    7258     LH2_Sphaeroides.pdb #1.2/A BCL 101 C4B  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2    -0.304    3.674
    7259     LH2_Sphaeroides.pdb #1.1/A BCL 101 C4B  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2    -0.304    3.674
    7260     LH2_Sphaeroides.pdb #1.2/K BCL 101 NB   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2    -0.305    3.185
    7261     LH2_Sphaeroides.pdb #1.1/K BCL 101 NB   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2    -0.305    3.185
    7262     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 39 O      -0.311    3.611
    7263     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 39 O      -0.311    3.611
    7264     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 CZ     -0.315    3.345
    7265     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 CZ     -0.315    3.345
    7266     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1C  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2    -0.317    3.687
    7267     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1C  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2    -0.317    3.687
    7268     LH2_Sphaeroides.pdb #1.2/A BCL 101 CHC  LH2_Sphaeroides.pdb #1.2/K BCL 101 CBB   -0.318    3.958
    7269     LH2_Sphaeroides.pdb #1.1/A BCL 101 CHC  LH2_Sphaeroides.pdb #1.1/K BCL 101 CBB   -0.318    3.958
    7270     LH2_Sphaeroides.pdb #1.2/K BCL 101 NB   LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2    -0.321    3.721
    7271     LH2_Sphaeroides.pdb #1.1/K BCL 101 NB   LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2    -0.321    3.721
    7272     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/K ALA 36 CB     -0.323    3.623
    7273     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/K ALA 36 CB     -0.323    3.623
    7274     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C14   -0.333    3.513
    7275     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C14   -0.333    3.513
    7276     LH2_Sphaeroides.pdb #1.2/A BCL 101 NC   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2    -0.333    3.213
    7277     LH2_Sphaeroides.pdb #1.1/A BCL 101 NC   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2    -0.333    3.213
    7278     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A LEU 41 CD2    -0.335    4.095
    7279     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A LEU 41 CD2    -0.335    4.095
    7280     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B BCL 101 CHD   -0.336    3.976
    7281     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B BCL 101 CHD   -0.336    3.976
    7282     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1B  LH2_Sphaeroides.pdb #1.2/K BCL 101 CMB   -0.337    3.827
    7283     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1B  LH2_Sphaeroides.pdb #1.1/K BCL 101 CMB   -0.337    3.827
    7284     LH2_Sphaeroides.pdb #1.2/A BCL 101 CGD  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA     -0.338    3.828
    7285     LH2_Sphaeroides.pdb #1.1/A BCL 101 CGD  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA     -0.338    3.828
    7286     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B SER 27 N      -0.339    3.859
    7287     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B SER 27 N      -0.339    3.859
    7288     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMA  LH2_Sphaeroides.pdb #1.2/K BCL 101 CMA   -0.339    4.099
    7289     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA  LH2_Sphaeroides.pdb #1.1/K BCL 101 CMA   -0.339    4.099
    7290     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 N      -0.340    3.860
    7291     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 N      -0.340    3.860
    7292     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB     -0.346    4.106
    7293     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB     -0.346    4.106
    7294     LH2_Sphaeroides.pdb #1.2/A BCL 101 ND   LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1    -0.350    3.750
    7295     LH2_Sphaeroides.pdb #1.1/A BCL 101 ND   LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1    -0.350    3.750
    7296     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/B TRP 40 CZ2    -0.351    3.991
    7297     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/B TRP 40 CZ2    -0.351    3.991
    7298     LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.2/A SER 27 OG     -0.352    3.422
    7299     LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.1/A SER 27 OG     -0.352    3.422
    7300     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1A  LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1    -0.359    3.729
    7301     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1A  LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1    -0.359    3.729
    7302     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/B BCL 102 C11   -0.361    4.121
    7303     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/B BCL 102 C11   -0.361    4.121
    7304     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CD1    -0.362    4.002
    7305     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CD1    -0.362    4.002
    7306     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2D  LH2_Sphaeroides.pdb #1.2/B BCL 101 C2D   -0.362    3.582
    7307     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2D  LH2_Sphaeroides.pdb #1.1/B BCL 101 C2D   -0.362    3.582
    7308     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/J MET 35 CG     -0.363    3.663
    7309     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/J MET 35 CG     -0.363    3.663
    7310     LH2_Sphaeroides.pdb #1.2/K BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/K ALA 43 CB     -0.365    4.125
    7311     LH2_Sphaeroides.pdb #1.1/K BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/K ALA 43 CB     -0.365    4.125
    7312     LH2_Sphaeroides.pdb #1.2/K BCL 101 C3D  LH2_Sphaeroides.pdb #1.2/B BCL 101 CAD   -0.366    3.586
    7313     LH2_Sphaeroides.pdb #1.1/K BCL 101 C3D  LH2_Sphaeroides.pdb #1.1/B BCL 101 CAD   -0.366    3.586
    7314     LH2_Sphaeroides.pdb #1.2/A BCL 101 O2D  LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ     -0.367    3.587
    7315     LH2_Sphaeroides.pdb #1.1/A BCL 101 O2D  LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ     -0.367    3.587
    7316     LH2_Sphaeroides.pdb #1.2/K BCL 101 CAD  LH2_Sphaeroides.pdb #1.2/B BCL 101 CAD   -0.370    3.590
    7317     LH2_Sphaeroides.pdb #1.1/K BCL 101 CAD  LH2_Sphaeroides.pdb #1.1/B BCL 101 CAD   -0.370    3.590
    7318     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2D  LH2_Sphaeroides.pdb #1.2/B BCL 101 C3D   -0.371    3.591
    7319     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2D  LH2_Sphaeroides.pdb #1.1/B BCL 101 C3D   -0.371    3.591
    7320     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA     -0.373    3.673
    7321     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA     -0.373    3.673
    7322     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C16   -0.376    4.016
    7323     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C16   -0.376    4.016
    7324     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBA  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C14   -0.377    4.017
    7325     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBA  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C14   -0.377    4.017
    7326     LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1    -0.377    3.867
    7327     LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1    -0.377    3.867
    7328     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1B  LH2_Sphaeroides.pdb #1.2/A 7OT 103 C8    -0.378    3.868
    7329     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1B  LH2_Sphaeroides.pdb #1.1/A 7OT 103 C8    -0.378    3.868
    7330     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/K BCL 101 C4B   -0.379    3.869
    7331     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/K BCL 101 C4B   -0.379    3.869
    7332     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B SER 27 CA     -0.387    4.147
    7333     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B SER 27 CA     -0.387    4.147
    7334    
    7335 
    7336  
    7337 304 contacts 
    7338 
    7339 > select #1/A-B:11-38/J-K:20-47/A:101/K:101 &backbone &~@CA
    7340 
    7341 672 atoms, 440 bonds, 224 residues, 2 models selected 
    7342 
    7343 > select #1:102
    7344 
    7345 1206 atoms, 1260 bonds, 72 pseudobonds, 36 residues, 4 models selected 
    7346 
    7347 > hide sel atoms
    7348 
    7349 > select #1/A:103
    7350 
    7351 84 atoms, 82 bonds, 2 residues, 2 models selected 
    7352 
    7353 > color sel orange
    7354 
    7355 > color sel byhetero
    7356 
    7357 > select #1/B:101
    7358 
    7359 132 atoms, 140 bonds, 8 pseudobonds, 2 residues, 4 models selected 
    7360 
    7361 > hide sel atoms
    7362 
    7363 > ui tool show Contacts
    7364 
    7365 [Repeated 1 time(s)]
    7366 
    7367 > contacts sel restrict "#1/A-B//J-K ₪פרםאקןמ" resSeparation 5
    7368 > ignoreHiddenModels true select true makePseudobonds false reveal true log
    7369 > true
    7370 
    7371 Invalid "restrict" argument: mangled atom specifier 
    7372 
    7373 > contacts sel restrict "#1/A-B/J-K ₪פרםאקןמ" resSeparation 5
    7374 > ignoreHiddenModels true select true makePseudobonds false reveal true log
    7375 > true
    7376 
    7377 Invalid "restrict" argument: mangled atom specifier 
    7378 
    7379 > contacts sel restrict "#1/A-B/J-K &protein" resSeparation 5
    7380 > ignoreHiddenModels true select true makePseudobonds false reveal true log
    7381 > true
    7382    
    7383    
    7384     Allowed overlap: -0.4
    7385     H-bond overlap reduction: 0.4
    7386     Ignore contacts between atoms separated by 4 bonds or less
    7387     Ignore contacts between atoms in residues less than 5 apart in sequence
    7388     Detect intra-residue contacts: False
    7389     Detect intra-molecule contacts: True
    7390    
    7391     152 contacts
    7392                     atom1                                   atom2                  overlap  distance
    7393     LH2_Sphaeroides.pdb #1.2/B BCL 101 MG   LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2   0.311    1.899
    7394     LH2_Sphaeroides.pdb #1.1/B BCL 101 MG   LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2   0.311    1.899
    7395     LH2_Sphaeroides.pdb #1.2/B BCL 101 C4   LH2_Sphaeroides.pdb #1.2/B VAL 28 CG2   0.302    3.458
    7396     LH2_Sphaeroides.pdb #1.1/B BCL 101 C4   LH2_Sphaeroides.pdb #1.1/B VAL 28 CG2   0.302    3.458
    7397     LH2_Sphaeroides.pdb #1.2/B BCL 101 NA   LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2   0.257    3.023
    7398     LH2_Sphaeroides.pdb #1.1/B BCL 101 NA   LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2   0.257    3.023
    7399     LH2_Sphaeroides.pdb #1.2/B BCL 101 ND   LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2   0.174    3.106
    7400     LH2_Sphaeroides.pdb #1.1/B BCL 101 ND   LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2   0.174    3.106
    7401     LH2_Sphaeroides.pdb #1.2/B BCL 101 C1   LH2_Sphaeroides.pdb #1.2/B SER 27 CB    0.136    3.624
    7402     LH2_Sphaeroides.pdb #1.1/B BCL 101 C1   LH2_Sphaeroides.pdb #1.1/B SER 27 CB    0.136    3.624
    7403     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K MET 35 CG    0.135    3.625
    7404     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K MET 35 CG    0.135    3.625
    7405     LH2_Sphaeroides.pdb #1.2/B BCL 101 NA   LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1   0.126    3.274
    7406     LH2_Sphaeroides.pdb #1.1/B BCL 101 NA   LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1   0.126    3.274
    7407     LH2_Sphaeroides.pdb #1.2/B BCL 101 C3D  LH2_Sphaeroides.pdb #1.2/K ALA 39 CB    0.065    3.425
    7408     LH2_Sphaeroides.pdb #1.1/B BCL 101 C3D  LH2_Sphaeroides.pdb #1.1/K ALA 39 CB    0.065    3.425
    7409     LH2_Sphaeroides.pdb #1.2/B BCL 101 C14  LH2_Sphaeroides.pdb #1.2/B VAL 24 CG2   0.055    3.705
    7410     LH2_Sphaeroides.pdb #1.1/B BCL 101 C14  LH2_Sphaeroides.pdb #1.1/B VAL 24 CG2   0.055    3.705
    7411     LH2_Sphaeroides.pdb #1.2/B BCL 101 NC   LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2   0.045    3.355
    7412     LH2_Sphaeroides.pdb #1.1/B BCL 101 NC   LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2   0.045    3.355
    7413     LH2_Sphaeroides.pdb #1.2/B BCL 101 CAA  LH2_Sphaeroides.pdb #1.2/B SER 27 OG    0.033    3.307
    7414     LH2_Sphaeroides.pdb #1.1/B BCL 101 CAA  LH2_Sphaeroides.pdb #1.1/B SER 27 OG    0.033    3.307
    7415     LH2_Sphaeroides.pdb #1.2/B BCL 101 C2   LH2_Sphaeroides.pdb #1.2/B VAL 24 CG1   0.012    3.628
    7416     LH2_Sphaeroides.pdb #1.1/B BCL 101 C2   LH2_Sphaeroides.pdb #1.1/B VAL 24 CG1   0.012    3.628
    7417     LH2_Sphaeroides.pdb #1.2/B BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2   0.005    3.635
    7418     LH2_Sphaeroides.pdb #1.1/B BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2   0.005    3.635
    7419     LH2_Sphaeroides.pdb #1.2/B BCL 101 CMA  LH2_Sphaeroides.pdb #1.2/K MET 35 CE    0.003    3.757
    7420     LH2_Sphaeroides.pdb #1.1/B BCL 101 CMA  LH2_Sphaeroides.pdb #1.1/K MET 35 CE    0.003    3.757
    7421     LH2_Sphaeroides.pdb #1.2/B BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   -0.012    3.192
    7422     LH2_Sphaeroides.pdb #1.1/B BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   -0.012    3.192
    7423     LH2_Sphaeroides.pdb #1.2/B BCL 101 CAD  LH2_Sphaeroides.pdb #1.2/K ALA 39 CB    -0.035    3.525
    7424     LH2_Sphaeroides.pdb #1.1/B BCL 101 CAD  LH2_Sphaeroides.pdb #1.1/K ALA 39 CB    -0.035    3.525
    7425     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ    -0.041    3.681
    7426     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ    -0.041    3.681
    7427     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K MET 35 CB    -0.044    3.804
    7428     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K MET 35 CB    -0.044    3.804
    7429     LH2_Sphaeroides.pdb #1.2/B BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/K ALA 39 CB    -0.044    3.344
    7430     LH2_Sphaeroides.pdb #1.1/B BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/K ALA 39 CB    -0.044    3.344
    7431     LH2_Sphaeroides.pdb #1.2/B BCL 101 NB   LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2   -0.045    3.445
    7432     LH2_Sphaeroides.pdb #1.1/B BCL 101 NB   LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2   -0.045    3.445
    7433     LH2_Sphaeroides.pdb #1.2/B BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/B TYR 45 OH    -0.049    2.529
    7434     LH2_Sphaeroides.pdb #1.1/B BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/B TYR 45 OH    -0.049    2.529
    7435     LH2_Sphaeroides.pdb #1.2/B BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/K ALA 36 CB    -0.051    3.351
    7436     LH2_Sphaeroides.pdb #1.1/B BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/K ALA 36 CB    -0.051    3.351
    7437     LH2_Sphaeroides.pdb #1.2/B BCL 101 C3   LH2_Sphaeroides.pdb #1.2/B VAL 24 CG1   -0.061    3.551
    7438     LH2_Sphaeroides.pdb #1.1/B BCL 101 C3   LH2_Sphaeroides.pdb #1.1/B VAL 24 CG1   -0.061    3.551
    7439     LH2_Sphaeroides.pdb #1.2/B BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/B LEU 41 CD1   -0.066    3.826
    7440     LH2_Sphaeroides.pdb #1.1/B BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/B LEU 41 CD1   -0.066    3.826
    7441     LH2_Sphaeroides.pdb #1.2/B BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/B LEU 41 CD1   -0.067    3.827
    7442     LH2_Sphaeroides.pdb #1.1/B BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/B LEU 41 CD1   -0.067    3.827
    7443     LH2_Sphaeroides.pdb #1.2/B BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/K ALA 36 CA    -0.079    3.379
    7444     LH2_Sphaeroides.pdb #1.1/B BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/K ALA 36 CA    -0.079    3.379
    7445     LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/K HIS 40 ND1   -0.081    3.601
    7446     LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/K HIS 40 ND1   -0.081    3.601
    7447     LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   -0.084    3.724
    7448     LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   -0.084    3.724
    7449     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K MET 35 SD    -0.089    3.739
    7450     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K MET 35 SD    -0.089    3.739
    7451     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CE2   -0.091    3.731
    7452     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CE2   -0.091    3.731
    7453     LH2_Sphaeroides.pdb #1.2/B BCL 101 C4   LH2_Sphaeroides.pdb #1.2/B VAL 24 CG1   -0.113    3.873
    7454     LH2_Sphaeroides.pdb #1.1/B BCL 101 C4   LH2_Sphaeroides.pdb #1.1/B VAL 24 CG1   -0.113    3.873
    7455     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K ALA 36 N     -0.125    3.645
    7456     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K ALA 36 N     -0.125    3.645
    7457     LH2_Sphaeroides.pdb #1.2/B BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/B VAL 34 CG1   -0.139    3.899
    7458     LH2_Sphaeroides.pdb #1.1/B BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/B VAL 34 CG1   -0.139    3.899
    7459     LH2_Sphaeroides.pdb #1.2/B BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/B SER 27 CB    -0.139    3.439
    7460     LH2_Sphaeroides.pdb #1.1/B BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/B SER 27 CB    -0.139    3.439
    7461     LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/K ALA 43 CB    -0.141    3.901
    7462     LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/K ALA 43 CB    -0.141    3.901
    7463     LH2_Sphaeroides.pdb #1.2/B BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/B TYR 45 CE1   -0.147    3.327
    7464     LH2_Sphaeroides.pdb #1.1/B BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/B TYR 45 CE1   -0.147    3.327
    7465     LH2_Sphaeroides.pdb #1.2/B BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/B TYR 45 OH    -0.153    3.493
    7466     LH2_Sphaeroides.pdb #1.1/B BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/B TYR 45 OH    -0.153    3.493
    7467     LH2_Sphaeroides.pdb #1.2/B BCL 101 NB   LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2   -0.160    3.040
    7468     LH2_Sphaeroides.pdb #1.1/B BCL 101 NB   LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2   -0.160    3.040
    7469     LH2_Sphaeroides.pdb #1.2/B BCL 101 CAB  LH2_Sphaeroides.pdb #1.2/B TYR 45 OH    -0.166    3.236
    7470     LH2_Sphaeroides.pdb #1.1/B BCL 101 CAB  LH2_Sphaeroides.pdb #1.1/B TYR 45 OH    -0.166    3.236
    7471     LH2_Sphaeroides.pdb #1.2/B BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/B VAL 34 CB    -0.166    3.926
    7472     LH2_Sphaeroides.pdb #1.1/B BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/B VAL 34 CB    -0.166    3.926
    7473     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1   -0.172    3.812
    7474     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1   -0.172    3.812
    7475     LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/K HIS 40 CA    -0.177    3.937
    7476     LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/K HIS 40 CA    -0.177    3.937
    7477     LH2_Sphaeroides.pdb #1.2/B BCL 101 CHC  LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2   -0.192    3.712
    7478     LH2_Sphaeroides.pdb #1.1/B BCL 101 CHC  LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2   -0.192    3.712
    7479     LH2_Sphaeroides.pdb #1.2/B BCL 101 CGA  LH2_Sphaeroides.pdb #1.2/B SER 27 CB    -0.194    3.684
    7480     LH2_Sphaeroides.pdb #1.1/B BCL 101 CGA  LH2_Sphaeroides.pdb #1.1/B SER 27 CB    -0.194    3.684
    7481     LH2_Sphaeroides.pdb #1.2/B BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/B TRP 40 CH2   -0.197    3.837
    7482     LH2_Sphaeroides.pdb #1.1/B BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/B TRP 40 CH2   -0.197    3.837
    7483     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K ALA 36 CA    -0.197    3.957
    7484     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K ALA 36 CA    -0.197    3.957
    7485     LH2_Sphaeroides.pdb #1.2/B BCL 101 C14  LH2_Sphaeroides.pdb #1.2/B SER 21 CA    -0.201    3.961
    7486     LH2_Sphaeroides.pdb #1.1/B BCL 101 C14  LH2_Sphaeroides.pdb #1.1/B SER 21 CA    -0.201    3.961
    7487     LH2_Sphaeroides.pdb #1.2/B BCL 101 C17  LH2_Sphaeroides.pdb #1.2/B LEU 20 CD1   -0.237    3.997
    7488     LH2_Sphaeroides.pdb #1.1/B BCL 101 C17  LH2_Sphaeroides.pdb #1.1/B LEU 20 CD1   -0.237    3.997
    7489     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 O     -0.247    3.547
    7490     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 O     -0.247    3.547
    7491     LH2_Sphaeroides.pdb #1.2/B BCL 101 C2   LH2_Sphaeroides.pdb #1.2/B VAL 24 CG2   -0.249    3.889
    7492     LH2_Sphaeroides.pdb #1.1/B BCL 101 C2   LH2_Sphaeroides.pdb #1.1/B VAL 24 CG2   -0.249    3.889
    7493     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K ALA 36 CB    -0.253    4.013
    7494     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K ALA 36 CB    -0.253    4.013
    7495     LH2_Sphaeroides.pdb #1.2/B BCL 101 C1   LH2_Sphaeroides.pdb #1.2/B VAL 24 CA    -0.257    4.017
    7496     LH2_Sphaeroides.pdb #1.1/B BCL 101 C1   LH2_Sphaeroides.pdb #1.1/B VAL 24 CA    -0.257    4.017
    7497     LH2_Sphaeroides.pdb #1.2/B BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/B VAL 34 CG1   -0.269    4.029
    7498     LH2_Sphaeroides.pdb #1.1/B BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/B VAL 34 CG1   -0.269    4.029
    7499     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CD2   -0.271    3.911
    7500     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CD2   -0.271    3.911
    7501     LH2_Sphaeroides.pdb #1.2/B BCL 101 C5   LH2_Sphaeroides.pdb #1.2/B VAL 24 CG1   -0.284    4.044
    7502     LH2_Sphaeroides.pdb #1.1/B BCL 101 C5   LH2_Sphaeroides.pdb #1.1/B VAL 24 CG1   -0.284    4.044
    7503     LH2_Sphaeroides.pdb #1.2/B BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/B LEU 41 CD2   -0.287    4.047
    7504     LH2_Sphaeroides.pdb #1.1/B BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/B LEU 41 CD2   -0.287    4.047
    7505     LH2_Sphaeroides.pdb #1.2/B BCL 101 C1   LH2_Sphaeroides.pdb #1.2/B VAL 24 CG1   -0.287    4.047
    7506     LH2_Sphaeroides.pdb #1.1/B BCL 101 C1   LH2_Sphaeroides.pdb #1.1/B VAL 24 CG1   -0.287    4.047
    7507     LH2_Sphaeroides.pdb #1.2/B BCL 101 C2D  LH2_Sphaeroides.pdb #1.2/K ALA 39 CB    -0.289    3.779
    7508     LH2_Sphaeroides.pdb #1.1/B BCL 101 C2D  LH2_Sphaeroides.pdb #1.1/K ALA 39 CB    -0.289    3.779
    7509     LH2_Sphaeroides.pdb #1.2/B BCL 101 C4B  LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2   -0.294    3.664
    7510     LH2_Sphaeroides.pdb #1.1/B BCL 101 C4B  LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2   -0.294    3.664
    7511     LH2_Sphaeroides.pdb #1.2/B BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/B TYR 45 CZ    -0.303    3.333
    7512     LH2_Sphaeroides.pdb #1.1/B BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/B TYR 45 CZ    -0.303    3.333
    7513     LH2_Sphaeroides.pdb #1.2/B BCL 101 C1   LH2_Sphaeroides.pdb #1.2/B SER 27 OG    -0.305    3.645
    7514     LH2_Sphaeroides.pdb #1.1/B BCL 101 C1   LH2_Sphaeroides.pdb #1.1/B SER 27 OG    -0.305    3.645
    7515     LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/K ALA 39 C     -0.312    3.802
    7516     LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/K ALA 39 C     -0.312    3.802
    7517     LH2_Sphaeroides.pdb #1.2/B BCL 101 C1C  LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2   -0.313    3.683
    7518     LH2_Sphaeroides.pdb #1.1/B BCL 101 C1C  LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2   -0.313    3.683
    7519     LH2_Sphaeroides.pdb #1.2/B BCL 101 CGD  LH2_Sphaeroides.pdb #1.2/K ALA 36 CA    -0.322    3.812
    7520     LH2_Sphaeroides.pdb #1.1/B BCL 101 CGD  LH2_Sphaeroides.pdb #1.1/K ALA 36 CA    -0.322    3.812
    7521     LH2_Sphaeroides.pdb #1.2/B BCL 101 C14  LH2_Sphaeroides.pdb #1.2/B VAL 24 CB    -0.333    4.093
    7522     LH2_Sphaeroides.pdb #1.1/B BCL 101 C14  LH2_Sphaeroides.pdb #1.1/B VAL 24 CB    -0.333    4.093
    7523     LH2_Sphaeroides.pdb #1.2/B BCL 101 ND   LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1   -0.335    3.735
    7524     LH2_Sphaeroides.pdb #1.1/B BCL 101 ND   LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1   -0.335    3.735
    7525     LH2_Sphaeroides.pdb #1.2/B BCL 101 NC   LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2   -0.335    3.215
    7526     LH2_Sphaeroides.pdb #1.1/B BCL 101 NC   LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2   -0.335    3.215
    7527     LH2_Sphaeroides.pdb #1.2/B BCL 101 CGA  LH2_Sphaeroides.pdb #1.2/B SER 27 OG    -0.346    3.416
    7528     LH2_Sphaeroides.pdb #1.1/B BCL 101 CGA  LH2_Sphaeroides.pdb #1.1/B SER 27 OG    -0.346    3.416
    7529     LH2_Sphaeroides.pdb #1.2/B BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CD1   -0.347    3.987
    7530     LH2_Sphaeroides.pdb #1.1/B BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CD1   -0.347    3.987
    7531     LH2_Sphaeroides.pdb #1.2/B BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/K ALA 36 CA    -0.350    3.650
    7532     LH2_Sphaeroides.pdb #1.1/B BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/K ALA 36 CA    -0.350    3.650
    7533     LH2_Sphaeroides.pdb #1.2/B BCL 101 O2D  LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ    -0.350    3.570
    7534     LH2_Sphaeroides.pdb #1.1/B BCL 101 O2D  LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ    -0.350    3.570
    7535     LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/K ALA 39 O     -0.351    3.651
    7536     LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/K ALA 39 O     -0.351    3.651
    7537     LH2_Sphaeroides.pdb #1.2/B BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/K MET 35 CG    -0.352    3.652
    7538     LH2_Sphaeroides.pdb #1.1/B BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/K MET 35 CG    -0.352    3.652
    7539     LH2_Sphaeroides.pdb #1.2/B BCL 101 C1A  LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1   -0.365    3.735
    7540     LH2_Sphaeroides.pdb #1.1/B BCL 101 C1A  LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1   -0.365    3.735
    7541     LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/K ALA 39 CB    -0.374    4.134
    7542     LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/K ALA 39 CB    -0.374    4.134
    7543     LH2_Sphaeroides.pdb #1.2/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/K HIS 40 N     -0.377    3.897
    7544     LH2_Sphaeroides.pdb #1.1/B BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/K HIS 40 N     -0.377    3.897
    7545    
    7546 
    7547  
    7548 152 contacts 
    7549 
    7550 > hide sel atoms
    7551 
    7552 > select #1 &~/A-B:11-38/J-K:20-47/A:101/K:101
    7553 
    7554 17132 atoms, 17066 bonds, 288 pseudobonds, 2140 residues, 7 models selected 
    7555 
    7556 > hide sel atoms
    7557 
    7558 > select #1/A:101/K:101
    7559 
    7560 264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    7561 
    7562 > contacts sel restrict "#1/A-B/J-K &protein" resSeparation 5
    7563 > ignoreHiddenModels true select true makePseudobonds false reveal true log
    7564 > true
    7565    
    7566    
    7567     Allowed overlap: -0.4
    7568     H-bond overlap reduction: 0.4
    7569     Ignore contacts between atoms separated by 4 bonds or less
    7570     Ignore contacts between atoms in residues less than 5 apart in sequence
    7571     Detect intra-residue contacts: False
    7572     Detect intra-molecule contacts: True
    7573    
    7574     342 contacts
    7575                     atom1                                   atom2                  overlap  distance
    7576     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1   0.497    3.143
    7577     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1   0.497    3.143
    7578     LH2_Sphaeroides.pdb #1.2/K BCL 101 ND   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2   0.350    2.930
    7579     LH2_Sphaeroides.pdb #1.1/K BCL 101 ND   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2   0.350    2.930
    7580     LH2_Sphaeroides.pdb #1.2/K BCL 101 ND   LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   0.329    3.071
    7581     LH2_Sphaeroides.pdb #1.1/K BCL 101 ND   LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   0.329    3.071
    7582     LH2_Sphaeroides.pdb #1.2/A BCL 101 MG   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2   0.309    1.901
    7583     LH2_Sphaeroides.pdb #1.1/A BCL 101 MG   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2   0.309    1.901
    7584     LH2_Sphaeroides.pdb #1.2/K BCL 101 MG   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2   0.309    1.901
    7585     LH2_Sphaeroides.pdb #1.1/K BCL 101 MG   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2   0.309    1.901
    7586     LH2_Sphaeroides.pdb #1.2/A BCL 101 C4   LH2_Sphaeroides.pdb #1.2/A VAL 28 CG2   0.296    3.464
    7587     LH2_Sphaeroides.pdb #1.1/A BCL 101 C4   LH2_Sphaeroides.pdb #1.1/A VAL 28 CG2   0.296    3.464
    7588     LH2_Sphaeroides.pdb #1.2/A BCL 101 NA   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2   0.244    3.036
    7589     LH2_Sphaeroides.pdb #1.1/A BCL 101 NA   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2   0.244    3.036
    7590     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2   0.206    3.314
    7591     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2   0.206    3.314
    7592     LH2_Sphaeroides.pdb #1.2/A BCL 101 C19  LH2_Sphaeroides.pdb #1.2/B VAL 10 CG1   0.175    3.585
    7593     LH2_Sphaeroides.pdb #1.1/A BCL 101 C19  LH2_Sphaeroides.pdb #1.1/B VAL 10 CG1   0.175    3.585
    7594     LH2_Sphaeroides.pdb #1.2/A BCL 101 ND   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2   0.163    3.117
    7595     LH2_Sphaeroides.pdb #1.1/A BCL 101 ND   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2   0.163    3.117
    7596     LH2_Sphaeroides.pdb #1.2/K BCL 101 C14  LH2_Sphaeroides.pdb #1.2/J VAL 31 CG1   0.161    3.599
    7597     LH2_Sphaeroides.pdb #1.1/K BCL 101 C14  LH2_Sphaeroides.pdb #1.1/J VAL 31 CG1   0.161    3.599
    7598     LH2_Sphaeroides.pdb #1.2/A BCL 101 C5   LH2_Sphaeroides.pdb #1.2/B ALA 26 CB    0.157    3.603
    7599     LH2_Sphaeroides.pdb #1.1/A BCL 101 C5   LH2_Sphaeroides.pdb #1.1/B ALA 26 CB    0.157    3.603
    7600     LH2_Sphaeroides.pdb #1.2/A BCL 101 C4   LH2_Sphaeroides.pdb #1.2/B ALA 26 CB    0.152    3.608
    7601     LH2_Sphaeroides.pdb #1.1/A BCL 101 C4   LH2_Sphaeroides.pdb #1.1/B ALA 26 CB    0.152    3.608
    7602     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1   LH2_Sphaeroides.pdb #1.2/A SER 27 CB    0.136    3.624
    7603     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1   LH2_Sphaeroides.pdb #1.1/A SER 27 CB    0.136    3.624
    7604     LH2_Sphaeroides.pdb #1.2/K BCL 101 NA   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2   0.133    3.147
    7605     LH2_Sphaeroides.pdb #1.1/K BCL 101 NA   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2   0.133    3.147
    7606     LH2_Sphaeroides.pdb #1.2/A BCL 101 C9   LH2_Sphaeroides.pdb #1.2/B PHE 19 CZ    0.127    3.513
    7607     LH2_Sphaeroides.pdb #1.1/A BCL 101 C9   LH2_Sphaeroides.pdb #1.1/B PHE 19 CZ    0.127    3.513
    7608     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B ALA 23 O     0.124    3.176
    7609     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B ALA 23 O     0.124    3.176
    7610     LH2_Sphaeroides.pdb #1.2/A BCL 101 NA   LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1   0.121    3.279
    7611     LH2_Sphaeroides.pdb #1.1/A BCL 101 NA   LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1   0.121    3.279
    7612     LH2_Sphaeroides.pdb #1.2/A BCL 101 C14  LH2_Sphaeroides.pdb #1.2/B ALA 22 CB    0.118    3.642
    7613     LH2_Sphaeroides.pdb #1.1/A BCL 101 C14  LH2_Sphaeroides.pdb #1.1/B ALA 22 CB    0.118    3.642
    7614     LH2_Sphaeroides.pdb #1.2/A BCL 101 C3D  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB    0.102    3.388
    7615     LH2_Sphaeroides.pdb #1.1/A BCL 101 C3D  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB    0.102    3.388
    7616     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J MET 35 CG    0.098    3.662
    7617     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J MET 35 CG    0.098    3.662
    7618     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1   0.093    3.547
    7619     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1   0.093    3.547
    7620     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 ND1   0.089    3.431
    7621     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 ND1   0.089    3.431
    7622     LH2_Sphaeroides.pdb #1.2/A BCL 101 C9   LH2_Sphaeroides.pdb #1.2/B PHE 19 CE2   0.081    3.559
    7623     LH2_Sphaeroides.pdb #1.1/A BCL 101 C9   LH2_Sphaeroides.pdb #1.1/B PHE 19 CE2   0.081    3.559
    7624     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/A TYR 45 CD1   0.071    3.569
    7625     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/A TYR 45 CD1   0.071    3.569
    7626     LH2_Sphaeroides.pdb #1.2/A BCL 101 C11  LH2_Sphaeroides.pdb #1.2/B ALA 22 CB    0.068    3.692
    7627     LH2_Sphaeroides.pdb #1.1/A BCL 101 C11  LH2_Sphaeroides.pdb #1.1/B ALA 22 CB    0.068    3.692
    7628     LH2_Sphaeroides.pdb #1.2/K BCL 101 C1   LH2_Sphaeroides.pdb #1.2/K GLY 33 CA    0.064    3.696
    7629     LH2_Sphaeroides.pdb #1.1/K BCL 101 C1   LH2_Sphaeroides.pdb #1.1/K GLY 33 CA    0.064    3.696
    7630     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1   0.056    3.704
    7631     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1   0.056    3.704
    7632     LH2_Sphaeroides.pdb #1.2/K BCL 101 C1D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2   0.055    3.435
    7633     LH2_Sphaeroides.pdb #1.1/K BCL 101 C1D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2   0.055    3.435
    7634     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1   0.049    3.251
    7635     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1   0.049    3.251
    7636     LH2_Sphaeroides.pdb #1.2/A BCL 101 C14  LH2_Sphaeroides.pdb #1.2/A VAL 24 CG2   0.049    3.711
    7637     LH2_Sphaeroides.pdb #1.1/A BCL 101 C14  LH2_Sphaeroides.pdb #1.1/A VAL 24 CG2   0.049    3.711
    7638     LH2_Sphaeroides.pdb #1.2/K BCL 101 NA   LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   0.044    3.356
    7639     LH2_Sphaeroides.pdb #1.1/K BCL 101 NA   LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   0.044    3.356
    7640     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ    0.042    3.598
    7641     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ    0.042    3.598
    7642     LH2_Sphaeroides.pdb #1.2/A BCL 101 NC   LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   0.039    3.361
    7643     LH2_Sphaeroides.pdb #1.1/A BCL 101 NC   LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   0.039    3.361
    7644     LH2_Sphaeroides.pdb #1.2/K BCL 101 C20  LH2_Sphaeroides.pdb #1.2/A VAL 24 CG2   0.026    3.734
    7645     LH2_Sphaeroides.pdb #1.1/K BCL 101 C20  LH2_Sphaeroides.pdb #1.1/A VAL 24 CG2   0.026    3.734
    7646     LH2_Sphaeroides.pdb #1.2/A BCL 101 C2   LH2_Sphaeroides.pdb #1.2/A VAL 24 CG1   0.019    3.621
    7647     LH2_Sphaeroides.pdb #1.1/A BCL 101 C2   LH2_Sphaeroides.pdb #1.1/A VAL 24 CG1   0.019    3.621
    7648     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2   LH2_Sphaeroides.pdb #1.2/K THR 29 CG2   0.019    3.621
    7649     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2   LH2_Sphaeroides.pdb #1.1/K THR 29 CG2   0.019    3.621
    7650     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAA  LH2_Sphaeroides.pdb #1.2/A SER 27 OG    0.014    3.326
    7651     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAA  LH2_Sphaeroides.pdb #1.1/A SER 27 OG    0.014    3.326
    7652     LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   0.007    3.363
    7653     LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   0.007    3.363
    7654     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAD  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB    -0.003    3.493
    7655     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAD  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB    -0.003    3.493
    7656     LH2_Sphaeroides.pdb #1.2/K BCL 101 CHD  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2   -0.009    3.649
    7657     LH2_Sphaeroides.pdb #1.1/K BCL 101 CHD  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2   -0.009    3.649
    7658     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/B SER 27 CB    -0.010    3.310
    7659     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/B SER 27 CB    -0.010    3.310
    7660     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CB    -0.025    3.785
    7661     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CB    -0.025    3.785
    7662     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/K TRP 49 NE1   -0.025    3.545
    7663     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/K TRP 49 NE1   -0.025    3.545
    7664     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMA  LH2_Sphaeroides.pdb #1.2/J MET 35 CE    -0.027    3.787
    7665     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA  LH2_Sphaeroides.pdb #1.1/J MET 35 CE    -0.027    3.787
    7666     LH2_Sphaeroides.pdb #1.2/A BCL 101 C20  LH2_Sphaeroides.pdb #1.2/B TRP 7 CH2    -0.027    3.667
    7667     LH2_Sphaeroides.pdb #1.1/A BCL 101 C20  LH2_Sphaeroides.pdb #1.1/B TRP 7 CH2    -0.027    3.667
    7668     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2   -0.034    3.794
    7669     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2   -0.034    3.794
    7670     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   -0.041    3.681
    7671     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   -0.041    3.681
    7672     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1   -0.046    3.226
    7673     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1   -0.046    3.226
    7674     LH2_Sphaeroides.pdb #1.2/K BCL 101 CHC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CZ2   -0.046    3.566
    7675     LH2_Sphaeroides.pdb #1.1/K BCL 101 CHC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CZ2   -0.046    3.566
    7676     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB    -0.048    3.348
    7677     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB    -0.048    3.348
    7678     LH2_Sphaeroides.pdb #1.2/A BCL 101 NB   LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   -0.050    3.450
    7679     LH2_Sphaeroides.pdb #1.1/A BCL 101 NB   LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   -0.050    3.450
    7680     LH2_Sphaeroides.pdb #1.2/A BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1   -0.050    3.810
    7681     LH2_Sphaeroides.pdb #1.1/A BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1   -0.050    3.810
    7682     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ    -0.051    3.691
    7683     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ    -0.051    3.691
    7684     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 44 CE2   -0.056    3.236
    7685     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 44 CE2   -0.056    3.236
    7686     LH2_Sphaeroides.pdb #1.2/K BCL 101 C1   LH2_Sphaeroides.pdb #1.2/K THR 29 CG2   -0.056    3.816
    7687     LH2_Sphaeroides.pdb #1.1/K BCL 101 C1   LH2_Sphaeroides.pdb #1.1/K THR 29 CG2   -0.056    3.816
    7688     LH2_Sphaeroides.pdb #1.2/A BCL 101 C3   LH2_Sphaeroides.pdb #1.2/A VAL 24 CG1   -0.059    3.549
    7689     LH2_Sphaeroides.pdb #1.1/A BCL 101 C3   LH2_Sphaeroides.pdb #1.1/A VAL 24 CG1   -0.059    3.549
    7690     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/K TRP 49 CE2   -0.067    3.557
    7691     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/K TRP 49 CE2   -0.067    3.557
    7692     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 OH    -0.070    2.550
    7693     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 OH    -0.070    2.550
    7694     LH2_Sphaeroides.pdb #1.2/A BCL 101 C13  LH2_Sphaeroides.pdb #1.2/B ALA 22 CB    -0.072    3.832
    7695     LH2_Sphaeroides.pdb #1.1/A BCL 101 C13  LH2_Sphaeroides.pdb #1.1/B ALA 22 CB    -0.072    3.832
    7696     LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ    -0.072    3.292
    7697     LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ    -0.072    3.292
    7698     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2   -0.075    3.565
    7699     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2   -0.075    3.565
    7700     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J MET 35 CB    -0.080    3.840
    7701     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J MET 35 CB    -0.080    3.840
    7702     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/J ALA 36 CB    -0.083    3.383
    7703     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/J ALA 36 CB    -0.083    3.383
    7704     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2   -0.085    3.725
    7705     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2   -0.085    3.725
    7706     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CE2   -0.085    3.725
    7707     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CE2   -0.085    3.725
    7708     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 44 OH    -0.086    2.566
    7709     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 44 OH    -0.086    2.566
    7710     LH2_Sphaeroides.pdb #1.2/K BCL 101 C4   LH2_Sphaeroides.pdb #1.2/K GLY 33 CA    -0.089    3.849
    7711     LH2_Sphaeroides.pdb #1.1/K BCL 101 C4   LH2_Sphaeroides.pdb #1.1/K GLY 33 CA    -0.089    3.849
    7712     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/K TRP 49 CZ2   -0.090    3.730
    7713     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/K TRP 49 CZ2   -0.090    3.730
    7714     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J MET 35 SD    -0.094    3.744
    7715     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J MET 35 SD    -0.094    3.744
    7716     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B SER 27 CB    -0.098    3.858
    7717     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B SER 27 CB    -0.098    3.858
    7718     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 ND1   -0.104    3.624
    7719     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 ND1   -0.104    3.624
    7720     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/K PHE 32 CD1   -0.106    3.286
    7721     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/K PHE 32 CD1   -0.106    3.286
    7722     LH2_Sphaeroides.pdb #1.2/A BCL 101 C18  LH2_Sphaeroides.pdb #1.2/B GLY 15 CA    -0.106    3.866
    7723     LH2_Sphaeroides.pdb #1.1/A BCL 101 C18  LH2_Sphaeroides.pdb #1.1/B GLY 15 CA    -0.106    3.866
    7724     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/K GLY 33 CA    -0.110    3.410
    7725     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/K GLY 33 CA    -0.110    3.410
    7726     LH2_Sphaeroides.pdb #1.2/A BCL 101 C4   LH2_Sphaeroides.pdb #1.2/A VAL 24 CG1   -0.115    3.875
    7727     LH2_Sphaeroides.pdb #1.1/A BCL 101 C4   LH2_Sphaeroides.pdb #1.1/A VAL 24 CG1   -0.115    3.875
    7728     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA    -0.115    3.415
    7729     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA    -0.115    3.415
    7730     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1   -0.117    3.757
    7731     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1   -0.117    3.757
    7732     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1   -0.120    3.880
    7733     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1   -0.120    3.880
    7734     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 43 CB    -0.123    3.883
    7735     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 43 CB    -0.123    3.883
    7736     LH2_Sphaeroides.pdb #1.2/A BCL 101 C19  LH2_Sphaeroides.pdb #1.2/B ILE 6 CD1    -0.126    3.886
    7737     LH2_Sphaeroides.pdb #1.1/A BCL 101 C19  LH2_Sphaeroides.pdb #1.1/B ILE 6 CD1    -0.126    3.886
    7738     LH2_Sphaeroides.pdb #1.2/A BCL 101 C19  LH2_Sphaeroides.pdb #1.2/B GLY 15 CA    -0.131    3.891
    7739     LH2_Sphaeroides.pdb #1.1/A BCL 101 C19  LH2_Sphaeroides.pdb #1.1/B GLY 15 CA    -0.131    3.891
    7740     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J ALA 36 N     -0.141    3.661
    7741     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J ALA 36 N     -0.141    3.661
    7742     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 OH    -0.145    3.485
    7743     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 OH    -0.145    3.485
    7744     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/A SER 27 CB    -0.146    3.446
    7745     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/A SER 27 CB    -0.146    3.446
    7746     LH2_Sphaeroides.pdb #1.2/A BCL 101 C9   LH2_Sphaeroides.pdb #1.2/B ALA 23 CB    -0.146    3.906
    7747     LH2_Sphaeroides.pdb #1.1/A BCL 101 C9   LH2_Sphaeroides.pdb #1.1/B ALA 23 CB    -0.146    3.906
    7748     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1   -0.148    3.328
    7749     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1   -0.148    3.328
    7750     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 CA    -0.157    3.917
    7751     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 CA    -0.157    3.917
    7752     LH2_Sphaeroides.pdb #1.2/A BCL 101 NB   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2   -0.157    3.037
    7753     LH2_Sphaeroides.pdb #1.1/A BCL 101 NB   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2   -0.157    3.037
    7754     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2   -0.159    3.919
    7755     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2   -0.159    3.919
    7756     LH2_Sphaeroides.pdb #1.2/A BCL 101 C20  LH2_Sphaeroides.pdb #1.2/B ILE 6 CD1    -0.167    3.927
    7757     LH2_Sphaeroides.pdb #1.1/A BCL 101 C20  LH2_Sphaeroides.pdb #1.1/B ILE 6 CD1    -0.167    3.927
    7758     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A VAL 34 CB    -0.171    3.931
    7759     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A VAL 34 CB    -0.171    3.931
    7760     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAB  LH2_Sphaeroides.pdb #1.2/A TYR 45 OH    -0.178    3.248
    7761     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAB  LH2_Sphaeroides.pdb #1.1/A TYR 45 OH    -0.178    3.248
    7762     LH2_Sphaeroides.pdb #1.2/A BCL 101 C14  LH2_Sphaeroides.pdb #1.2/A SER 21 CA    -0.179    3.939
    7763     LH2_Sphaeroides.pdb #1.1/A BCL 101 C14  LH2_Sphaeroides.pdb #1.1/A SER 21 CA    -0.179    3.939
    7764     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA    -0.185    3.945
    7765     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA    -0.185    3.945
    7766     LH2_Sphaeroides.pdb #1.2/K BCL 101 CHA  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   -0.187    3.557
    7767     LH2_Sphaeroides.pdb #1.1/K BCL 101 CHA  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   -0.187    3.557
    7768     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1   -0.188    3.948
    7769     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1   -0.188    3.948
    7770     LH2_Sphaeroides.pdb #1.2/K BCL 101 C4   LH2_Sphaeroides.pdb #1.2/K THR 29 O     -0.189    3.489
    7771     LH2_Sphaeroides.pdb #1.1/K BCL 101 C4   LH2_Sphaeroides.pdb #1.1/K THR 29 O     -0.189    3.489
    7772     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CE1   -0.192    3.832
    7773     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CE1   -0.192    3.832
    7774     LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1   -0.193    3.413
    7775     LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1   -0.193    3.413
    7776     LH2_Sphaeroides.pdb #1.2/A BCL 101 CHC  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   -0.197    3.717
    7777     LH2_Sphaeroides.pdb #1.1/A BCL 101 CHC  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   -0.197    3.717
    7778     LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.2/A SER 27 CB    -0.198    3.688
    7779     LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.1/A SER 27 CB    -0.198    3.688
    7780     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/A TRP 40 CH2   -0.200    3.840
    7781     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/A TRP 40 CH2   -0.200    3.840
    7782     LH2_Sphaeroides.pdb #1.2/A BCL 101 C15  LH2_Sphaeroides.pdb #1.2/B LEU 18 CD2   -0.202    3.962
    7783     LH2_Sphaeroides.pdb #1.1/A BCL 101 C15  LH2_Sphaeroides.pdb #1.1/B LEU 18 CD2   -0.202    3.962
    7784     LH2_Sphaeroides.pdb #1.2/A BCL 101 C16  LH2_Sphaeroides.pdb #1.2/B LEU 18 CD2   -0.204    3.964
    7785     LH2_Sphaeroides.pdb #1.1/A BCL 101 C16  LH2_Sphaeroides.pdb #1.1/B LEU 18 CD2   -0.204    3.964
    7786     LH2_Sphaeroides.pdb #1.2/K BCL 101 C4   LH2_Sphaeroides.pdb #1.2/K ARG 30 CA    -0.218    3.978
    7787     LH2_Sphaeroides.pdb #1.1/K BCL 101 C4   LH2_Sphaeroides.pdb #1.1/K ARG 30 CA    -0.218    3.978
    7788     LH2_Sphaeroides.pdb #1.2/K BCL 101 NC   LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2   -0.221    3.621
    7789     LH2_Sphaeroides.pdb #1.1/K BCL 101 NC   LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2   -0.221    3.621
    7790     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J ALA 36 CB    -0.225    3.985
    7791     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J ALA 36 CB    -0.225    3.985
    7792     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1   -0.227    3.867
    7793     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1   -0.227    3.867
    7794     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CD1   -0.227    3.867
    7795     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CD1   -0.227    3.867
    7796     LH2_Sphaeroides.pdb #1.2/A BCL 101 C17  LH2_Sphaeroides.pdb #1.2/A LEU 20 CD1   -0.231    3.991
    7797     LH2_Sphaeroides.pdb #1.1/A BCL 101 C17  LH2_Sphaeroides.pdb #1.1/A LEU 20 CD1   -0.231    3.991
    7798     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 O     -0.239    3.539
    7799     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 O     -0.239    3.539
    7800     LH2_Sphaeroides.pdb #1.2/A BCL 101 C2   LH2_Sphaeroides.pdb #1.2/A VAL 24 CG2   -0.242    3.882
    7801     LH2_Sphaeroides.pdb #1.1/A BCL 101 C2   LH2_Sphaeroides.pdb #1.1/A VAL 24 CG2   -0.242    3.882
    7802     LH2_Sphaeroides.pdb #1.2/A BCL 101 C9   LH2_Sphaeroides.pdb #1.2/B PHE 19 CE1   -0.247    3.887
    7803     LH2_Sphaeroides.pdb #1.1/A BCL 101 C9   LH2_Sphaeroides.pdb #1.1/B PHE 19 CE1   -0.247    3.887
    7804     LH2_Sphaeroides.pdb #1.2/A BCL 101 C16  LH2_Sphaeroides.pdb #1.2/B PHE 19 CA    -0.251    4.011
    7805     LH2_Sphaeroides.pdb #1.1/A BCL 101 C16  LH2_Sphaeroides.pdb #1.1/B PHE 19 CA    -0.251    4.011
    7806     LH2_Sphaeroides.pdb #1.2/K BCL 101 C3   LH2_Sphaeroides.pdb #1.2/K THR 29 CG2   -0.253    3.743
    7807     LH2_Sphaeroides.pdb #1.1/K BCL 101 C3   LH2_Sphaeroides.pdb #1.1/K THR 29 CG2   -0.253    3.743
    7808     LH2_Sphaeroides.pdb #1.2/K BCL 101 C1A  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   -0.258    3.628
    7809     LH2_Sphaeroides.pdb #1.1/K BCL 101 C1A  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   -0.258    3.628
    7810     LH2_Sphaeroides.pdb #1.2/K BCL 101 NC   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2   -0.259    3.139
    7811     LH2_Sphaeroides.pdb #1.1/K BCL 101 NC   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2   -0.259    3.139
    7812     LH2_Sphaeroides.pdb #1.2/A BCL 101 C2D  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB    -0.259    3.749
    7813     LH2_Sphaeroides.pdb #1.1/A BCL 101 C2D  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB    -0.259    3.749
    7814     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1   LH2_Sphaeroides.pdb #1.2/A VAL 24 CA    -0.261    4.021
    7815     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1   LH2_Sphaeroides.pdb #1.1/A VAL 24 CA    -0.261    4.021
    7816     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CD2   -0.262    3.902
    7817     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2   -0.262    3.902
    7818     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/B SER 27 OG    -0.269    2.749
    7819     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/B SER 27 OG    -0.269    2.749
    7820     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 39 C     -0.270    3.760
    7821     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 39 C     -0.270    3.760
    7822     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1   LH2_Sphaeroides.pdb #1.2/A VAL 24 CG1   -0.276    4.036
    7823     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1   LH2_Sphaeroides.pdb #1.1/A VAL 24 CG1   -0.276    4.036
    7824     LH2_Sphaeroides.pdb #1.2/A BCL 101 C5   LH2_Sphaeroides.pdb #1.2/A VAL 24 CG1   -0.283    4.043
    7825     LH2_Sphaeroides.pdb #1.1/A BCL 101 C5   LH2_Sphaeroides.pdb #1.1/A VAL 24 CG1   -0.283    4.043
    7826     LH2_Sphaeroides.pdb #1.2/A BCL 101 C16  LH2_Sphaeroides.pdb #1.2/B LEU 18 CG    -0.286    4.046
    7827     LH2_Sphaeroides.pdb #1.1/A BCL 101 C16  LH2_Sphaeroides.pdb #1.1/B LEU 18 CG    -0.286    4.046
    7828     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CE2   -0.290    3.780
    7829     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CE2   -0.290    3.780
    7830     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 CG    -0.292    3.782
    7831     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 CG    -0.292    3.782
    7832     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 44 CZ    -0.293    3.323
    7833     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 44 CZ    -0.293    3.323
    7834     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1   -0.296    4.056
    7835     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1   -0.296    4.056
    7836     LH2_Sphaeroides.pdb #1.2/A BCL 101 C15  LH2_Sphaeroides.pdb #1.2/B LEU 18 CG    -0.300    4.060
    7837     LH2_Sphaeroides.pdb #1.1/A BCL 101 C15  LH2_Sphaeroides.pdb #1.1/B LEU 18 CG    -0.300    4.060
    7838     LH2_Sphaeroides.pdb #1.2/K BCL 101 C4   LH2_Sphaeroides.pdb #1.2/K THR 29 CG2   -0.300    4.060
    7839     LH2_Sphaeroides.pdb #1.1/K BCL 101 C4   LH2_Sphaeroides.pdb #1.1/K THR 29 CG2   -0.300    4.060
    7840     LH2_Sphaeroides.pdb #1.2/A BCL 101 C4B  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   -0.304    3.674
    7841     LH2_Sphaeroides.pdb #1.1/A BCL 101 C4B  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   -0.304    3.674
    7842     LH2_Sphaeroides.pdb #1.2/K BCL 101 NB   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2   -0.305    3.185
    7843     LH2_Sphaeroides.pdb #1.1/K BCL 101 NB   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2   -0.305    3.185
    7844     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1   LH2_Sphaeroides.pdb #1.2/A SER 27 OG    -0.310    3.650
    7845     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1   LH2_Sphaeroides.pdb #1.1/A SER 27 OG    -0.310    3.650
    7846     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 39 O     -0.311    3.611
    7847     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 39 O     -0.311    3.611
    7848     LH2_Sphaeroides.pdb #1.2/A BCL 101 C14  LH2_Sphaeroides.pdb #1.2/A VAL 24 CB    -0.312    4.072
    7849     LH2_Sphaeroides.pdb #1.1/A BCL 101 C14  LH2_Sphaeroides.pdb #1.1/A VAL 24 CB    -0.312    4.072
    7850     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 CZ    -0.315    3.345
    7851     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 CZ    -0.315    3.345
    7852     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1C  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   -0.317    3.687
    7853     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1C  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   -0.317    3.687
    7854     LH2_Sphaeroides.pdb #1.2/K BCL 101 NB   LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2   -0.321    3.721
    7855     LH2_Sphaeroides.pdb #1.1/K BCL 101 NB   LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2   -0.321    3.721
    7856     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/K ALA 36 CB    -0.323    3.623
    7857     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/K ALA 36 CB    -0.323    3.623
    7858     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CE3   -0.326    3.966
    7859     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CE3   -0.326    3.966
    7860     LH2_Sphaeroides.pdb #1.2/A BCL 101 C9   LH2_Sphaeroides.pdb #1.2/B PHE 19 CD2   -0.331    3.971
    7861     LH2_Sphaeroides.pdb #1.1/A BCL 101 C9   LH2_Sphaeroides.pdb #1.1/B PHE 19 CD2   -0.331    3.971
    7862     LH2_Sphaeroides.pdb #1.2/A BCL 101 NC   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2   -0.333    3.213
    7863     LH2_Sphaeroides.pdb #1.1/A BCL 101 NC   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2   -0.333    3.213
    7864     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A LEU 41 CD2   -0.335    4.095
    7865     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A LEU 41 CD2   -0.335    4.095
    7866     LH2_Sphaeroides.pdb #1.2/A BCL 101 CGD  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA    -0.338    3.828
    7867     LH2_Sphaeroides.pdb #1.1/A BCL 101 CGD  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA    -0.338    3.828
    7868     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B SER 27 N     -0.339    3.859
    7869     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B SER 27 N     -0.339    3.859
    7870     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 N     -0.340    3.860
    7871     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 N     -0.340    3.860
    7872     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB    -0.346    4.106
    7873     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB    -0.346    4.106
    7874     LH2_Sphaeroides.pdb #1.2/K BCL 101 C17  LH2_Sphaeroides.pdb #1.2/J PHE 32 CD2   -0.348    3.988
    7875     LH2_Sphaeroides.pdb #1.1/K BCL 101 C17  LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2   -0.348    3.988
    7876     LH2_Sphaeroides.pdb #1.2/A BCL 101 ND   LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1   -0.350    3.750
    7877     LH2_Sphaeroides.pdb #1.1/A BCL 101 ND   LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1   -0.350    3.750
    7878     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/B TRP 40 CZ2   -0.351    3.991
    7879     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/B TRP 40 CZ2   -0.351    3.991
    7880     LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.2/A SER 27 OG    -0.352    3.422
    7881     LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.1/A SER 27 OG    -0.352    3.422
    7882     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CG    -0.352    3.842
    7883     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CG    -0.352    3.842
    7884     LH2_Sphaeroides.pdb #1.2/A BCL 101 C15  LH2_Sphaeroides.pdb #1.2/A LEU 20 CB    -0.358    4.118
    7885     LH2_Sphaeroides.pdb #1.1/A BCL 101 C15  LH2_Sphaeroides.pdb #1.1/A LEU 20 CB    -0.358    4.118
    7886     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1A  LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1   -0.359    3.729
    7887     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1A  LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1   -0.359    3.729
    7888     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CD1   -0.362    4.002
    7889     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CD1   -0.362    4.002
    7890     LH2_Sphaeroides.pdb #1.2/A BCL 101 C10  LH2_Sphaeroides.pdb #1.2/B PHE 19 CE2   -0.362    4.002
    7891     LH2_Sphaeroides.pdb #1.1/A BCL 101 C10  LH2_Sphaeroides.pdb #1.1/B PHE 19 CE2   -0.362    4.002
    7892     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/J MET 35 CG    -0.363    3.663
    7893     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/J MET 35 CG    -0.363    3.663
    7894     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/K TRP 49 NE1   -0.365    3.885
    7895     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/K TRP 49 NE1   -0.365    3.885
    7896     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/K TRP 49 CD2   -0.365    3.855
    7897     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/K TRP 49 CD2   -0.365    3.855
    7898     LH2_Sphaeroides.pdb #1.2/K BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/K ALA 43 CB    -0.365    4.125
    7899     LH2_Sphaeroides.pdb #1.1/K BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/K ALA 43 CB    -0.365    4.125
    7900     LH2_Sphaeroides.pdb #1.2/A BCL 101 O2D  LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ    -0.367    3.587
    7901     LH2_Sphaeroides.pdb #1.1/A BCL 101 O2D  LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ    -0.367    3.587
    7902     LH2_Sphaeroides.pdb #1.2/A BCL 101 C20  LH2_Sphaeroides.pdb #1.2/B TRP 7 CZ2    -0.372    4.012
    7903     LH2_Sphaeroides.pdb #1.1/A BCL 101 C20  LH2_Sphaeroides.pdb #1.1/B TRP 7 CZ2    -0.372    4.012
    7904     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA    -0.373    3.673
    7905     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA    -0.373    3.673
    7906     LH2_Sphaeroides.pdb #1.2/A BCL 101 C18  LH2_Sphaeroides.pdb #1.2/B GLY 15 O     -0.376    3.676
    7907     LH2_Sphaeroides.pdb #1.1/A BCL 101 C18  LH2_Sphaeroides.pdb #1.1/B GLY 15 O     -0.376    3.676
    7908     LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1   -0.377    3.867
    7909     LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1   -0.377    3.867
    7910     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B SER 27 CA    -0.387    4.147
    7911     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B SER 27 CA    -0.387    4.147
    7912     LH2_Sphaeroides.pdb #1.2/A BCL 101 C7   LH2_Sphaeroides.pdb #1.2/B ALA 23 CA    -0.390    4.150
    7913     LH2_Sphaeroides.pdb #1.1/A BCL 101 C7   LH2_Sphaeroides.pdb #1.1/B ALA 23 CA    -0.390    4.150
    7914     LH2_Sphaeroides.pdb #1.2/A BCL 101 C16  LH2_Sphaeroides.pdb #1.2/B PHE 19 CB    -0.391    4.151
    7915     LH2_Sphaeroides.pdb #1.1/A BCL 101 C16  LH2_Sphaeroides.pdb #1.1/B PHE 19 CB    -0.391    4.151
    7916     LH2_Sphaeroides.pdb #1.2/K BCL 101 C15  LH2_Sphaeroides.pdb #1.2/J PHE 32 CD2   -0.394    4.034
    7917     LH2_Sphaeroides.pdb #1.1/K BCL 101 C15  LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2   -0.394    4.034
    7918    
    7919 
    7920  
    7921 342 contacts 
    7922 
    7923 > select #1/A:1
    7924 
    7925 22 atoms, 20 bonds, 2 residues, 2 models selected 
    7926 
    7927 > select #1/A:11
    7928 
    7929 18 atoms, 16 bonds, 2 residues, 2 models selected 
    7930 
    7931 > select #1/A:11@N/B:38/C
    7932 
    7933 1196 atoms, 1198 bonds, 18 pseudobonds, 138 residues, 4 models selected 
    7934 
    7935 > select #1/A:11@N/B:38@C
    7936 
    7937 4 atoms, 4 residues, 2 models selected 
    7938 
    7939 > color sel yellow
    7940 
    7941 > color sel cyan
    7942 
    7943 > select #1/A:39-45/B:40
    7944 
    7945 158 atoms, 168 bonds, 4 pseudobonds, 16 residues, 4 models selected 
    7946 
    7947 > show sel atoms
    7948 
    7949 > select #1/A:39-45/B:39-40
    7950 
    7951 172 atoms, 182 bonds, 18 residues, 2 models selected 
    7952 
    7953 > show sel atoms
    7954 
    7955 > select #1/A:39-45/B:39-40/K:48-49
    7956 
    7957 214 atoms, 228 bonds, 22 residues, 2 models selected 
    7958 
    7959 > show sel atoms
    7960 
    7961 > style sel sphere
    7962 
    7963 Changed 214 atom styles 
    7964 
    7965 > style sel stick
    7966 
    7967 Changed 214 atom styles 
    7968 
    7969 > select #1/A:39-45/B:39-40/K:48-49/A:101/K:101
    7970 
    7971 478 atoms, 508 bonds, 16 pseudobonds, 26 residues, 4 models selected 
    7972 
    7973 > ui tool show H-Bonds
    7974 
    7975 > hbonds sel dashes 6 restrict both interModel false intraRes false reveal
    7976 > true retainCurrent true
    7977 
    7978 12 hydrogen bonds found 
    7979 
    7980 > select add #1
    7981 
    7982 19000 atoms, 18990 bonds, 438 pseudobonds, 2368 residues, 9 models selected 
    7983 
    7984 > select subtract #1
    7985 
    7986 Nothing selected 
    7987 
    7988 > save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap
    7989 > packing.cxs"
    7990 
    7991 ——— End of log from Wed Aug 16 15:24:32 2023 ———
    7992 
    7993 opened ChimeraX session 
    7994 
    7995 > select #1/A-B:11-38/J-K:20-47 &@CA
    7996 
    7997 224 atoms, 2 pseudobonds, 224 residues, 4 models selected 
    7998 
    7999 > select #1/A-B:11-38/J-K:20-47 &~@CA
    8000 
    8001 1380 atoms, 972 bonds, 42 pseudobonds, 224 residues, 4 models selected 
    8002 
    8003 > hide sel atoms
    8004 
    8005 > style sel ball
    8006 
    8007 Changed 1380 atom styles 
    8008 
    8009 > select #1/A-B:11-38/J-K:20-47 &@CA
    8010 
    8011 224 atoms, 208 pseudobonds, 224 residues, 4 models selected 
    8012 
    8013 > style sel ball
    8014 
    8015 Changed 224 atom styles 
    8016 
    8017 > select #4/A
    8018 
    8019 148 atoms, 148 bonds, 27 pseudobonds, 28 residues, 2 models selected 
    8020 
    8021 > color sel violet
    8022 
    8023 > hide #!3 models
    8024 
    8025 > color sel byhetero
    8026 
    8027 > select #4/B
    8028 
    8029 142 atoms, 141 bonds, 27 pseudobonds, 28 residues, 2 models selected 
    8030 
    8031 > color sel rosy brown
    8032 
    8033 > color sel peru
    8034 
    8035 > color sel byhetero
    8036 
    8037 > select #4/C
    8038 
    8039 140 atoms, 139 bonds, 27 pseudobonds, 28 residues, 2 models selected 
    8040 
    8041 > color sel slate blue
    8042 
    8043 > color sel medium slate blue
    8044 
    8045 > color sel byhetero
    8046 
    8047 > select #1/A:101/K:101
    8048 
    8049 264 atoms, 280 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    8050 
    8051 > select #1/A:101/K:101 &~@C[1][0123456789],C[0123456789],C20
    8052 
    8053 184 atoms, 200 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    8054 
    8055 > select #1/A:101/K:101 &@C[1][0123456789],C[0123456789],C20
    8056 
    8057 80 atoms, 76 bonds, 4 residues, 2 models selected 
    8058 
    8059 > hide sel atoms
    8060 
    8061 > select #1/A:101/K:101 &~@C[1][0123456789],C[0123456789],C20
    8062 
    8063 184 atoms, 200 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    8064 
    8065 > ui tool show Contacts
    8066 
    8067 > contacts sel restrict "#1 &protein" resSeparation 5 ignoreHiddenModels true
    8068 > select true makePseudobonds false reveal true log true
    8069    
    8070    
    8071     Allowed overlap: -0.4
    8072     H-bond overlap reduction: 0.4
    8073     Ignore contacts between atoms separated by 4 bonds or less
    8074     Ignore contacts between atoms in residues less than 5 apart in sequence
    8075     Detect intra-residue contacts: False
    8076     Detect intra-molecule contacts: True
    8077    
    8078     236 contacts
    8079                     atom1                                   atom2                  overlap  distance
    8080     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 CE1   0.497    3.143
    8081     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 CE1   0.497    3.143
    8082     LH2_Sphaeroides.pdb #1.2/K BCL 101 ND   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2   0.350    2.930
    8083     LH2_Sphaeroides.pdb #1.1/K BCL 101 ND   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2   0.350    2.930
    8084     LH2_Sphaeroides.pdb #1.2/K BCL 101 ND   LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   0.329    3.071
    8085     LH2_Sphaeroides.pdb #1.1/K BCL 101 ND   LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   0.329    3.071
    8086     LH2_Sphaeroides.pdb #1.2/A BCL 101 MG   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2   0.309    1.901
    8087     LH2_Sphaeroides.pdb #1.1/A BCL 101 MG   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2   0.309    1.901
    8088     LH2_Sphaeroides.pdb #1.2/K BCL 101 MG   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2   0.309    1.901
    8089     LH2_Sphaeroides.pdb #1.1/K BCL 101 MG   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2   0.309    1.901
    8090     LH2_Sphaeroides.pdb #1.2/A BCL 101 NA   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2   0.244    3.036
    8091     LH2_Sphaeroides.pdb #1.1/A BCL 101 NA   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2   0.244    3.036
    8092     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 NE2   0.206    3.314
    8093     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 NE2   0.206    3.314
    8094     LH2_Sphaeroides.pdb #1.2/A BCL 101 ND   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2   0.163    3.117
    8095     LH2_Sphaeroides.pdb #1.1/A BCL 101 ND   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2   0.163    3.117
    8096     LH2_Sphaeroides.pdb #1.2/K BCL 101 NA   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2   0.133    3.147
    8097     LH2_Sphaeroides.pdb #1.1/K BCL 101 NA   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2   0.133    3.147
    8098     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B ALA 23 O     0.124    3.176
    8099     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B ALA 23 O     0.124    3.176
    8100     LH2_Sphaeroides.pdb #1.2/A BCL 101 NA   LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1   0.121    3.279
    8101     LH2_Sphaeroides.pdb #1.1/A BCL 101 NA   LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1   0.121    3.279
    8102     LH2_Sphaeroides.pdb #1.2/A BCL 101 C3D  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB    0.102    3.388
    8103     LH2_Sphaeroides.pdb #1.1/A BCL 101 C3D  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB    0.102    3.388
    8104     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J MET 35 CG    0.098    3.662
    8105     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J MET 35 CG    0.098    3.662
    8106     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1   0.093    3.547
    8107     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1   0.093    3.547
    8108     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 ND1   0.089    3.431
    8109     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 ND1   0.089    3.431
    8110     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/A TYR 45 CD1   0.071    3.569
    8111     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/A TYR 45 CD1   0.071    3.569
    8112     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1   0.055    3.705
    8113     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1   0.055    3.705
    8114     LH2_Sphaeroides.pdb #1.2/K BCL 101 C1D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2   0.055    3.435
    8115     LH2_Sphaeroides.pdb #1.1/K BCL 101 C1D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2   0.055    3.435
    8116     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1   0.049    3.251
    8117     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1   0.049    3.251
    8118     LH2_Sphaeroides.pdb #1.2/K BCL 101 NA   LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   0.044    3.356
    8119     LH2_Sphaeroides.pdb #1.1/K BCL 101 NA   LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   0.044    3.356
    8120     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ    0.042    3.598
    8121     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ    0.042    3.598
    8122     LH2_Sphaeroides.pdb #1.2/A BCL 101 NC   LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   0.039    3.361
    8123     LH2_Sphaeroides.pdb #1.1/A BCL 101 NC   LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   0.039    3.361
    8124     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAA  LH2_Sphaeroides.pdb #1.2/A SER 27 OG    0.014    3.326
    8125     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAA  LH2_Sphaeroides.pdb #1.1/A SER 27 OG    0.014    3.326
    8126     LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   0.007    3.363
    8127     LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   0.007    3.363
    8128     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAD  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB    -0.003    3.493
    8129     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAD  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB    -0.003    3.493
    8130     LH2_Sphaeroides.pdb #1.2/K BCL 101 CHD  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2   -0.009    3.649
    8131     LH2_Sphaeroides.pdb #1.1/K BCL 101 CHD  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2   -0.009    3.649
    8132     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/B SER 27 CB    -0.010    3.310
    8133     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/B SER 27 CB    -0.010    3.310
    8134     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CB    -0.025    3.785
    8135     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CB    -0.025    3.785
    8136     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/K TRP 49 NE1   -0.025    3.545
    8137     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/K TRP 49 NE1   -0.025    3.545
    8138     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMA  LH2_Sphaeroides.pdb #1.2/J MET 35 CE    -0.027    3.787
    8139     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA  LH2_Sphaeroides.pdb #1.1/J MET 35 CE    -0.027    3.787
    8140     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2   -0.034    3.794
    8141     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2   -0.034    3.794
    8142     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   -0.041    3.681
    8143     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   -0.041    3.681
    8144     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1   -0.046    3.226
    8145     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1   -0.046    3.226
    8146     LH2_Sphaeroides.pdb #1.2/K BCL 101 CHC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CZ2   -0.046    3.566
    8147     LH2_Sphaeroides.pdb #1.1/K BCL 101 CHC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CZ2   -0.046    3.566
    8148     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB    -0.048    3.348
    8149     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB    -0.048    3.348
    8150     LH2_Sphaeroides.pdb #1.2/A BCL 101 NB   LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   -0.050    3.450
    8151     LH2_Sphaeroides.pdb #1.1/A BCL 101 NB   LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   -0.050    3.450
    8152     LH2_Sphaeroides.pdb #1.2/A BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/A LEU 41 CD1   -0.050    3.810
    8153     LH2_Sphaeroides.pdb #1.1/A BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/A LEU 41 CD1   -0.050    3.810
    8154     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ    -0.051    3.691
    8155     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ    -0.051    3.691
    8156     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 44 CE2   -0.056    3.236
    8157     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 44 CE2   -0.056    3.236
    8158     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/K TRP 49 CE2   -0.067    3.557
    8159     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/K TRP 49 CE2   -0.067    3.557
    8160     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 OH    -0.070    2.550
    8161     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 OH    -0.070    2.550
    8162     LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.2/K PHE 32 CZ    -0.072    3.292
    8163     LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.1/K PHE 32 CZ    -0.072    3.292
    8164     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2   -0.075    3.565
    8165     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2   -0.075    3.565
    8166     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J MET 35 CB    -0.080    3.840
    8167     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J MET 35 CB    -0.080    3.840
    8168     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/J ALA 36 CB    -0.083    3.383
    8169     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/J ALA 36 CB    -0.083    3.383
    8170     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 CD2   -0.085    3.725
    8171     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 CD2   -0.085    3.725
    8172     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CE2   -0.085    3.725
    8173     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CE2   -0.085    3.725
    8174     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 44 OH    -0.086    2.566
    8175     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 44 OH    -0.086    2.566
    8176     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/K TRP 49 CZ2   -0.090    3.730
    8177     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/K TRP 49 CZ2   -0.090    3.730
    8178     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J MET 35 SD    -0.094    3.744
    8179     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J MET 35 SD    -0.094    3.744
    8180     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B SER 27 CB    -0.098    3.858
    8181     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B SER 27 CB    -0.098    3.858
    8182     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 ND1   -0.104    3.624
    8183     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 ND1   -0.104    3.624
    8184     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/K PHE 32 CD1   -0.106    3.286
    8185     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/K PHE 32 CD1   -0.106    3.286
    8186     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/K GLY 33 CA    -0.110    3.410
    8187     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/K GLY 33 CA    -0.110    3.410
    8188     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA    -0.115    3.415
    8189     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA    -0.115    3.415
    8190     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 CE1   -0.117    3.757
    8191     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1   -0.117    3.757
    8192     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1   -0.120    3.880
    8193     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1   -0.120    3.880
    8194     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 43 CB    -0.123    3.883
    8195     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 43 CB    -0.123    3.883
    8196     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J ALA 36 N     -0.141    3.661
    8197     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J ALA 36 N     -0.141    3.661
    8198     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 OH    -0.145    3.485
    8199     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 OH    -0.145    3.485
    8200     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/A SER 27 CB    -0.146    3.446
    8201     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/A SER 27 CB    -0.146    3.446
    8202     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 CE1   -0.148    3.328
    8203     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 CE1   -0.148    3.328
    8204     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 CA    -0.157    3.917
    8205     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 CA    -0.157    3.917
    8206     LH2_Sphaeroides.pdb #1.2/A BCL 101 NB   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2   -0.157    3.037
    8207     LH2_Sphaeroides.pdb #1.1/A BCL 101 NB   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2   -0.157    3.037
    8208     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B ILE 30 CG2   -0.159    3.919
    8209     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B ILE 30 CG2   -0.159    3.919
    8210     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A VAL 34 CB    -0.171    3.931
    8211     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A VAL 34 CB    -0.171    3.931
    8212     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAB  LH2_Sphaeroides.pdb #1.2/A TYR 45 OH    -0.178    3.248
    8213     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAB  LH2_Sphaeroides.pdb #1.1/A TYR 45 OH    -0.178    3.248
    8214     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA    -0.185    3.945
    8215     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA    -0.185    3.945
    8216     LH2_Sphaeroides.pdb #1.2/K BCL 101 CHA  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   -0.187    3.557
    8217     LH2_Sphaeroides.pdb #1.1/K BCL 101 CHA  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   -0.187    3.557
    8218     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1   -0.188    3.948
    8219     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMB  LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1   -0.188    3.948
    8220     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CE1   -0.192    3.832
    8221     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CE1   -0.192    3.832
    8222     LH2_Sphaeroides.pdb #1.2/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1   -0.193    3.413
    8223     LH2_Sphaeroides.pdb #1.1/K BCL 101 O2D  LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1   -0.193    3.413
    8224     LH2_Sphaeroides.pdb #1.2/A BCL 101 CHC  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   -0.197    3.717
    8225     LH2_Sphaeroides.pdb #1.1/A BCL 101 CHC  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   -0.197    3.717
    8226     LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.2/A SER 27 CB    -0.198    3.688
    8227     LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.1/A SER 27 CB    -0.198    3.688
    8228     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/A TRP 40 CH2   -0.200    3.840
    8229     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/A TRP 40 CH2   -0.200    3.840
    8230     LH2_Sphaeroides.pdb #1.2/K BCL 101 NC   LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2   -0.221    3.621
    8231     LH2_Sphaeroides.pdb #1.1/K BCL 101 NC   LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2   -0.221    3.621
    8232     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J ALA 36 CB    -0.225    3.985
    8233     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J ALA 36 CB    -0.225    3.985
    8234     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/K PHE 32 CE1   -0.227    3.867
    8235     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/K PHE 32 CE1   -0.227    3.867
    8236     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CD1   -0.227    3.867
    8237     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CD1   -0.227    3.867
    8238     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 O     -0.239    3.539
    8239     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 O     -0.239    3.539
    8240     LH2_Sphaeroides.pdb #1.2/K BCL 101 C1A  LH2_Sphaeroides.pdb #1.2/K HIS 40 CE1   -0.258    3.628
    8241     LH2_Sphaeroides.pdb #1.1/K BCL 101 C1A  LH2_Sphaeroides.pdb #1.1/K HIS 40 CE1   -0.258    3.628
    8242     LH2_Sphaeroides.pdb #1.2/K BCL 101 NC   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2   -0.259    3.139
    8243     LH2_Sphaeroides.pdb #1.1/K BCL 101 NC   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2   -0.259    3.139
    8244     LH2_Sphaeroides.pdb #1.2/A BCL 101 C2D  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB    -0.259    3.749
    8245     LH2_Sphaeroides.pdb #1.1/A BCL 101 C2D  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB    -0.259    3.749
    8246     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CD2   -0.262    3.902
    8247     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2   -0.262    3.902
    8248     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.2/B SER 27 OG    -0.269    2.749
    8249     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBD  LH2_Sphaeroides.pdb #1.1/B SER 27 OG    -0.269    2.749
    8250     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 39 C     -0.270    3.760
    8251     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 39 C     -0.270    3.760
    8252     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CE2   -0.290    3.780
    8253     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CE2   -0.290    3.780
    8254     LH2_Sphaeroides.pdb #1.2/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/B HIS 31 CG    -0.292    3.782
    8255     LH2_Sphaeroides.pdb #1.1/K BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/B HIS 31 CG    -0.292    3.782
    8256     LH2_Sphaeroides.pdb #1.2/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 44 CZ    -0.293    3.323
    8257     LH2_Sphaeroides.pdb #1.1/K BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 44 CZ    -0.293    3.323
    8258     LH2_Sphaeroides.pdb #1.2/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/A VAL 34 CG1   -0.296    4.056
    8259     LH2_Sphaeroides.pdb #1.1/A BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/A VAL 34 CG1   -0.296    4.056
    8260     LH2_Sphaeroides.pdb #1.2/A BCL 101 C4B  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   -0.304    3.674
    8261     LH2_Sphaeroides.pdb #1.1/A BCL 101 C4B  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   -0.304    3.674
    8262     LH2_Sphaeroides.pdb #1.2/K BCL 101 NB   LH2_Sphaeroides.pdb #1.2/K HIS 40 NE2   -0.305    3.185
    8263     LH2_Sphaeroides.pdb #1.1/K BCL 101 NB   LH2_Sphaeroides.pdb #1.1/K HIS 40 NE2   -0.305    3.185
    8264     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 39 O     -0.311    3.611
    8265     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 39 O     -0.311    3.611
    8266     LH2_Sphaeroides.pdb #1.2/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.2/A TYR 45 CZ    -0.315    3.345
    8267     LH2_Sphaeroides.pdb #1.1/A BCL 101 OBB  LH2_Sphaeroides.pdb #1.1/A TYR 45 CZ    -0.315    3.345
    8268     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1C  LH2_Sphaeroides.pdb #1.2/A HIS 31 CD2   -0.317    3.687
    8269     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1C  LH2_Sphaeroides.pdb #1.1/A HIS 31 CD2   -0.317    3.687
    8270     LH2_Sphaeroides.pdb #1.2/K BCL 101 NB   LH2_Sphaeroides.pdb #1.2/K HIS 40 CD2   -0.321    3.721
    8271     LH2_Sphaeroides.pdb #1.1/K BCL 101 NB   LH2_Sphaeroides.pdb #1.1/K HIS 40 CD2   -0.321    3.721
    8272     LH2_Sphaeroides.pdb #1.2/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.2/K ALA 36 CB    -0.323    3.623
    8273     LH2_Sphaeroides.pdb #1.1/K BCL 101 O1A  LH2_Sphaeroides.pdb #1.1/K ALA 36 CB    -0.323    3.623
    8274     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CE3   -0.326    3.966
    8275     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CE3   -0.326    3.966
    8276     LH2_Sphaeroides.pdb #1.2/A BCL 101 NC   LH2_Sphaeroides.pdb #1.2/A HIS 31 NE2   -0.333    3.213
    8277     LH2_Sphaeroides.pdb #1.1/A BCL 101 NC   LH2_Sphaeroides.pdb #1.1/A HIS 31 NE2   -0.333    3.213
    8278     LH2_Sphaeroides.pdb #1.2/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/A LEU 41 CD2   -0.335    4.095
    8279     LH2_Sphaeroides.pdb #1.1/A BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/A LEU 41 CD2   -0.335    4.095
    8280     LH2_Sphaeroides.pdb #1.2/A BCL 101 CGD  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA    -0.338    3.828
    8281     LH2_Sphaeroides.pdb #1.1/A BCL 101 CGD  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA    -0.338    3.828
    8282     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B SER 27 N     -0.339    3.859
    8283     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B SER 27 N     -0.339    3.859
    8284     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J HIS 40 N     -0.340    3.860
    8285     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J HIS 40 N     -0.340    3.860
    8286     LH2_Sphaeroides.pdb #1.2/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.2/J ALA 39 CB    -0.346    4.106
    8287     LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD  LH2_Sphaeroides.pdb #1.1/J ALA 39 CB    -0.346    4.106
    8288     LH2_Sphaeroides.pdb #1.2/A BCL 101 ND   LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1   -0.350    3.750
    8289     LH2_Sphaeroides.pdb #1.1/A BCL 101 ND   LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1   -0.350    3.750
    8290     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/B TRP 40 CZ2   -0.351    3.991
    8291     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/B TRP 40 CZ2   -0.351    3.991
    8292     LH2_Sphaeroides.pdb #1.2/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.2/A SER 27 OG    -0.352    3.422
    8293     LH2_Sphaeroides.pdb #1.1/A BCL 101 CGA  LH2_Sphaeroides.pdb #1.1/A SER 27 OG    -0.352    3.422
    8294     LH2_Sphaeroides.pdb #1.2/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.2/K TRP 49 CG    -0.352    3.842
    8295     LH2_Sphaeroides.pdb #1.1/K BCL 101 CBC  LH2_Sphaeroides.pdb #1.1/K TRP 49 CG    -0.352    3.842
    8296     LH2_Sphaeroides.pdb #1.2/A BCL 101 C1A  LH2_Sphaeroides.pdb #1.2/A HIS 31 CE1   -0.359    3.729
    8297     LH2_Sphaeroides.pdb #1.1/A BCL 101 C1A  LH2_Sphaeroides.pdb #1.1/A HIS 31 CE1   -0.359    3.729
    8298     LH2_Sphaeroides.pdb #1.2/A BCL 101 CED  LH2_Sphaeroides.pdb #1.2/J PHE 32 CD1   -0.362    4.002
    8299     LH2_Sphaeroides.pdb #1.1/A BCL 101 CED  LH2_Sphaeroides.pdb #1.1/J PHE 32 CD1   -0.362    4.002
    8300     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/J MET 35 CG    -0.363    3.663
    8301     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/J MET 35 CG    -0.363    3.663
    8302     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/K TRP 49 NE1   -0.365    3.885
    8303     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/K TRP 49 NE1   -0.365    3.885
    8304     LH2_Sphaeroides.pdb #1.2/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.2/K TRP 49 CD2   -0.365    3.855
    8305     LH2_Sphaeroides.pdb #1.1/K BCL 101 C2C  LH2_Sphaeroides.pdb #1.1/K TRP 49 CD2   -0.365    3.855
    8306     LH2_Sphaeroides.pdb #1.2/K BCL 101 CAC  LH2_Sphaeroides.pdb #1.2/K ALA 43 CB    -0.365    4.125
    8307     LH2_Sphaeroides.pdb #1.1/K BCL 101 CAC  LH2_Sphaeroides.pdb #1.1/K ALA 43 CB    -0.365    4.125
    8308     LH2_Sphaeroides.pdb #1.2/A BCL 101 O2D  LH2_Sphaeroides.pdb #1.2/J PHE 32 CZ    -0.367    3.587
    8309     LH2_Sphaeroides.pdb #1.1/A BCL 101 O2D  LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ    -0.367    3.587
    8310     LH2_Sphaeroides.pdb #1.2/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.2/J ALA 36 CA    -0.373    3.673
    8311     LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D  LH2_Sphaeroides.pdb #1.1/J ALA 36 CA    -0.373    3.673
    8312     LH2_Sphaeroides.pdb #1.2/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.2/B ILE 30 CD1   -0.377    3.867
    8313     LH2_Sphaeroides.pdb #1.1/K BCL 101 C4D  LH2_Sphaeroides.pdb #1.1/B ILE 30 CD1   -0.377    3.867
    8314     LH2_Sphaeroides.pdb #1.2/K BCL 101 CED  LH2_Sphaeroides.pdb #1.2/B SER 27 CA    -0.387    4.147
    8315     LH2_Sphaeroides.pdb #1.1/K BCL 101 CED  LH2_Sphaeroides.pdb #1.1/B SER 27 CA    -0.387    4.147
    8316    
    8317 
    8318  
    8319 236 contacts 
    8320 
    8321 > select #1/A-B:11-38/J-K:20-47 &backbone &~@CA
    8322 
    8323 672 atoms, 440 bonds, 224 residues, 2 models selected 
    8324 
    8325 > hide sel atoms
    8326 
    8327 > select #1/A-B/J-K
    8328 
    8329 4258 atoms, 4250 bonds, 402 pseudobonds, 532 residues, 8 models selected 
    8330 
    8331 > select #1/A-B/J-K &protein
    8332 
    8333 2900 atoms, 2976 bonds, 282 pseudobonds, 388 residues, 6 models selected 
    8334 
    8335 > color sel bychain
    8336 
    8337 > color sel byhetero
    8338 
    8339 > select clear
    8340 
    8341 > hide #!4 models
    8342 
    8343 > show #!4 models
    8344 
    8345 > select #1/B:7-9
    8346 
    8347 58 atoms, 60 bonds, 6 residues, 2 models selected 
    8348 
    8349 > select #1/B:6-10
    8350 
    8351 88 atoms, 90 bonds, 2 pseudobonds, 10 residues, 4 models selected 
    8352 
    8353 > hide sel atoms
    8354 
    8355 > select #1/B:21
    8356 
    8357 12 atoms, 10 bonds, 2 residues, 2 models selected 
    8358 
    8359 > select #1/B:21@CA
    8360 
    8361 2 atoms, 2 residues, 2 models selected 
    8362 
    8363 > show sel atoms
    8364 
    8365 > hide #!4 models
    8366 
    8367 > select #1/B:23-25@CA
    8368 
    8369 6 atoms, 6 residues, 2 models selected 
    8370 
    8371 > show sel atoms
    8372 
    8373 > show #!4 models
    8374 
    8375 > save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap Chl prot
    8376 > interactions.cxs"
    8377 
    8378 > select #1/A:101/K:101 &~@C[1][0123456789],C[0123456789],C20 :<12
    8379 > &#1/A-B:11-38/J-K:20-47
    8380 
    8381 Nothing selected 
    8382 
    8383 > select #1/A:101/K:101 :<12 &#1/A-B:11-38/J-K:20-47
    8384 
    8385 1530 atoms, 1550 bonds, 248 pseudobonds, 216 residues, 6 models selected 
    8386 
    8387 > select #1/A:101/K:101&~@C[1][0123456789],C[0123456789],C20 :<12
    8388 > &#1/A-B:11-38/J-K:20-47
    8389 
    8390 Nothing selected 
    8391 
    8392 > select #1/A:101/K:101&~@C[1][0123456789],C[0123456789],C20
    8393 
    8394 184 atoms, 200 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    8395 
    8396 > name frozen ChlideX2 sel
    8397 
    8398 > select ChlideX2 :<12 &#1/A-B:11-38/J-K:20-47
    8399 
    8400 1218 atoms, 1232 bonds, 202 pseudobonds, 174 residues, 6 models selected 
    8401 
    8402 > select ChlideX2 :<10 &#1/A-B:11-38/J-K:20-47
    8403 
    8404 1126 atoms, 1134 bonds, 180 pseudobonds, 162 residues, 6 models selected 
    8405 
    8406 > select ChlideX2 :<9 &#1/A-B:11-38/J-K:20-47
    8407 
    8408 1070 atoms, 1076 bonds, 166 pseudobonds, 154 residues, 6 models selected 
    8409 
    8410 > select ChlideX2
    8411 
    8412 184 atoms, 200 bonds, 16 pseudobonds, 4 residues, 4 models selected 
    8413 
    8414 > show sel atoms
    8415 
    8416 > select ChlideX2 :<6 &#1/A-B:11-38/J-K:20-47
    8417 
    8418 498 atoms, 472 bonds, 50 pseudobonds, 72 residues, 6 models selected 
    8419 
    8420 > save "/Users/drornoy/Desktop/LH2 helices/LH2 5hB design p_ap_p_p_ap Chl prot
    8421 > interactions.cxs"
    8422 
    8423 ——— End of log from Wed Aug 16 16:38:24 2023 ———
    8424 
    8425 opened ChimeraX session 
    8426 
    8427 > select #4/E
    8428 
    8429 140 atoms, 139 bonds, 28 residues, 1 model selected 
    8430 
    8431 > style sel ball
    8432 
    8433 Changed 140 atom styles 
    8434 
    8435 > select #4/E@N,O,C,H
    8436 
    8437 112 atoms, 83 bonds, 28 residues, 1 model selected 
    8438 
    8439 > hide sel atoms
    8440 
    8441 > select #1.1/A:101
    8442 
    8443 66 atoms, 70 bonds, 4 pseudobonds, 1 residue, 2 models selected 
    8444 
    8445 > select #1.1/A:101/J:20-47
    8446 
    8447 272 atoms, 279 bonds, 34 pseudobonds, 29 residues, 4 models selected 
    8448 
    8449 > ui tool show Clashes
    8450 
    8451 > clashes sel restrict #1.1/A:101 ignoreHiddenModels true select true color
    8452 > #fffb00 reveal true
    8453 
    8454 No clashes 
    8455 
    8456 > select #1.1/J:20-47
    8457 
    8458 206 atoms, 209 bonds, 30 pseudobonds, 28 residues, 3 models selected 
    8459 
    8460 > ui tool show Contacts
    8461 
    8462 > contacts sel restrict #1.1/A:101 resSeparation 5 interModel false
    8463 > ignoreHiddenModels true select true color #00fa92 reveal true log true
    8464    
    8465    
    8466     Allowed overlap: -0.4
    8467     H-bond overlap reduction: 0.4
    8468     Ignore contacts between atoms separated by 4 bonds or less
    8469     Ignore contacts between atoms in residues less than 5 apart in sequence
    8470     Detect intra-residue contacts: False
    8471     Detect intra-molecule contacts: True
    8472    
    8473     32 contacts
    8474                     atom1                                  atom2                   overlap  distance
    8475     LH2_Sphaeroides.pdb #1.1/J ALA 39 CB   LH2_Sphaeroides.pdb #1.1/A BCL 101 C3D   0.102    3.388
    8476     LH2_Sphaeroides.pdb #1.1/J MET 35 CG   LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   0.098    3.662
    8477     LH2_Sphaeroides.pdb #1.1/J ALA 39 CB   LH2_Sphaeroides.pdb #1.1/A BCL 101 CAD   -0.003    3.493
    8478     LH2_Sphaeroides.pdb #1.1/J MET 35 CE   LH2_Sphaeroides.pdb #1.1/A BCL 101 CMA   -0.027    3.787
    8479     LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1  LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD   -0.046    3.226
    8480     LH2_Sphaeroides.pdb #1.1/J ALA 39 CB   LH2_Sphaeroides.pdb #1.1/A BCL 101 O1D   -0.048    3.348
    8481     LH2_Sphaeroides.pdb #1.1/J PHE 32 CZ   LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   -0.051    3.691
    8482     LH2_Sphaeroides.pdb #1.1/J MET 35 CB   LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   -0.080    3.840
    8483     LH2_Sphaeroides.pdb #1.1/J ALA 36 CB   LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD   -0.083    3.383
    8484     LH2_Sphaeroides.pdb #1.1/J PHE 32 CE2  LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   -0.085    3.725
    8485     LH2_Sphaeroides.pdb #1.1/J MET 35 SD   LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   -0.094    3.744
    8486     LH2_Sphaeroides.pdb #1.1/J HIS 40 ND1  LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD   -0.104    3.624
    8487     LH2_Sphaeroides.pdb #1.1/J ALA 36 CA   LH2_Sphaeroides.pdb #1.1/A BCL 101 OBD   -0.115    3.415
    8488     LH2_Sphaeroides.pdb #1.1/J HIS 40 CE1  LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD   -0.117    3.757
    8489     LH2_Sphaeroides.pdb #1.1/J ALA 43 CB   LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD   -0.123    3.883
    8490     LH2_Sphaeroides.pdb #1.1/J ALA 36 N    LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   -0.141    3.661
    8491     LH2_Sphaeroides.pdb #1.1/J HIS 40 CA   LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD   -0.157    3.917
    8492     LH2_Sphaeroides.pdb #1.1/J ALA 36 CA   LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   -0.185    3.945
    8493     LH2_Sphaeroides.pdb #1.1/J PHE 32 CE1  LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   -0.192    3.832
    8494     LH2_Sphaeroides.pdb #1.1/J ALA 36 CB   LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   -0.225    3.985
    8495     LH2_Sphaeroides.pdb #1.1/J PHE 32 O    LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   -0.239    3.539
    8496     LH2_Sphaeroides.pdb #1.1/J ALA 39 CB   LH2_Sphaeroides.pdb #1.1/A BCL 101 C2D   -0.259    3.749
    8497     LH2_Sphaeroides.pdb #1.1/J PHE 32 CD2  LH2_Sphaeroides.pdb #1.1/A BCL 101 CED   -0.262    3.902
     102********** Deleted several thousands lines to stay within Trac limits ***********
     103
     104BCL 101 CED   -0.262    3.902
    8498105    LH2_Sphaeroides.pdb #1.1/J ALA 39 C    LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD   -0.270    3.760
    8499106    LH2_Sphaeroides.pdb #1.1/J ALA 39 O    LH2_Sphaeroides.pdb #1.1/A BCL 101 CMD   -0.311    3.611