MemoryError opening mmCIF files

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "E:\\\OneDrive - Van Andel
> Institute\\\Downloads\\\cryosparc_P6_J648_005_volume_map.mrc"

Opened cryosparc_P6_J648_005_volume_map.mrc as #1, grid size 360,360,360,
pixel 0.828, shown at level 0.0941, step 2, values float32  

> open "E:/OneDrive - Van Andel
> Institute/Downloads/cryosparc_P6_J648_005_volume_map.mrc" "E:/OneDrive - Van
> Andel Institute/Downloads/cryosparc_P6_J648_005_volume_map_sharp.mrc"
> "E:/OneDrive - Van Andel
> Institute/Downloads/cryosparc_P6_J652_007_volume_map.mrc" "E:/OneDrive - Van
> Andel Institute/Downloads/cryosparc_P6_J652_007_volume_map_sharp.mrc"
> "E:/OneDrive - Van Andel
> Institute/Downloads/cryosparc_P6_J653_007_volume_map.mrc" "E:/OneDrive - Van
> Andel Institute/Downloads/cryosparc_P6_J653_007_volume_map_sharp.mrc"

Opened cryosparc_P6_J648_005_volume_map.mrc as #2.1, grid size 360,360,360,
pixel 0.828, shown at level 0.0941, step 2, values float32  
Opened cryosparc_P6_J648_005_volume_map_sharp.mrc as #2.2, grid size
360,360,360, pixel 0.828, shown at level 0.102, step 2, values float32  
Opened cryosparc_P6_J652_007_volume_map.mrc as #2.3, grid size 360,360,360,
pixel 0.828, shown at level 0.0887, step 2, values float32  
Opened cryosparc_P6_J652_007_volume_map_sharp.mrc as #2.4, grid size
360,360,360, pixel 0.828, shown at level 0.105, step 2, values float32  
Opened cryosparc_P6_J653_007_volume_map.mrc as #2.5, grid size 360,360,360,
pixel 0.828, shown at level 0.0863, step 2, values float32  
Opened cryosparc_P6_J653_007_volume_map_sharp.mrc as #2.6, grid size
360,360,360, pixel 0.828, shown at level 0.108, step 2, values float32  

> hide #!1 models

> surface dust size 10

Missing or invalid "surfaces" argument: invalid surfaces specifier  

> surface dust #2 size 10

> volume #1-9 step 1

> close #1

> volume #1-9 step 1 level 0.15

> hide #!2.2 models

> hide #!2.4 models

> fitmap #2.1-6 inMap #2.1 eachModel true

Fit map cryosparc_P6_J648_005_volume_map.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 287423 points  
correlation = 1, correlation about mean = 1, overlap = 2.042e+04  
steps = 44, shift = 0.00742, angle = 0.00544 degrees  
  
Position of cryosparc_P6_J648_005_volume_map.mrc (#2.1) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
1.00000000 -0.00000000 0.00000000 0.00000000  
0.00000000 1.00000000 -0.00000000 0.00000000  
0.00000000 0.00000000 1.00000000 0.00000000  
Axis 0.84483833 0.21120958 0.49156761  
Axis point 0.00000000 -281.96541641 -98.83789514  
Rotation angle (degrees) 0.00000000  
Shift along axis 0.00000000  
  
Fit map cryosparc_P6_J648_005_volume_map_sharp.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 327001 points  
correlation = 0.9551, correlation about mean = 0.8114, overlap = 3.15e+04  
steps = 44, shift = 0.00426, angle = 0.0102 degrees  
  
Position of cryosparc_P6_J648_005_volume_map_sharp.mrc (#2.2) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
0.99999999 0.00000166 0.00012697 -0.01011384  
-0.00000166 1.00000000 0.00000183 0.00138096  
-0.00012697 -0.00000183 0.99999999 0.01435485  
Axis -0.01444755 0.99980990 -0.01309328  
Axis point 113.19398359 0.00000000 79.51291013  
Rotation angle (degrees) 0.00727598  
Shift along axis 0.00133886  
  
Fit map cryosparc_P6_J652_007_volume_map.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 275963 points  
correlation = 0.991, correlation about mean = 0.9204, overlap = 1.97e+04  
steps = 64, shift = 0.0408, angle = 0.272 degrees  
  
Position of cryosparc_P6_J652_007_volume_map.mrc (#2.3) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
0.99999222 -0.00035616 -0.00392812 0.64058932  
0.00036635 0.99999657 0.00259382 -0.39316257  
0.00392718 -0.00259524 0.99998892 -0.20441530  
Axis -0.54956340 -0.83194038 0.07651981  
Axis point 51.70412475 0.00000000 157.29563842  
Rotation angle (degrees) 0.27049838  
Shift along axis -0.04059845  
  
Fit map cryosparc_P6_J652_007_volume_map_sharp.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 327535 points  
correlation = 0.9236, correlation about mean = 0.7144, overlap = 3.248e+04  
steps = 44, shift = 0.0457, angle = 0.278 degrees  
  
Position of cryosparc_P6_J652_007_volume_map_sharp.mrc (#2.4) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
0.99999210 -0.00044680 -0.00395028 0.66021329  
0.00045760 0.99999616 0.00273421 -0.42356157  
0.00394905 -0.00273600 0.99998846 -0.18604658  
Axis -0.56680654 -0.81850383 0.09371142  
Axis point 46.51413201 0.00000000 160.58634622  
Rotation angle (degrees) 0.27648004  
Shift along axis -0.04496113  
  
Fit map cryosparc_P6_J653_007_volume_map.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 270146 points  
correlation = 0.9883, correlation about mean = 0.8969, overlap = 1.931e+04  
steps = 48, shift = 0.053, angle = 0.26 degrees  
  
Position of cryosparc_P6_J653_007_volume_map.mrc (#2.5) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
0.99999722 0.00004876 -0.00235625 0.29126321  
-0.00003977 0.99999273 0.00381272 -0.55390272  
0.00235642 -0.00381262 0.99998996 0.20367319  
Axis -0.85061161 -0.52570179 -0.00987562  
Axis point 0.00000000 53.16018165 139.66725235  
Rotation angle (degrees) 0.25681589  
Shift along axis 0.04142438  
  
Fit map cryosparc_P6_J653_007_volume_map_sharp.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 330243 points  
correlation = 0.9073, correlation about mean = 0.6856, overlap = 3.427e+04  
steps = 48, shift = 0.0496, angle = 0.261 degrees  
  
Position of cryosparc_P6_J653_007_volume_map_sharp.mrc (#2.6) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
0.99999765 -0.00004254 -0.00216883 0.28184263  
0.00005109 0.99999222 0.00394367 -0.58653648  
0.00216865 -0.00394377 0.99998987 0.25483026  
Axis -0.87619747 -0.48184004 0.01040050  
Axis point 0.00000000 64.14457584 144.17348017  
Rotation angle (degrees) 0.25788626  
Shift along axis 0.03831732  
  

> fitmap #2.1-6 inMap #2.1 eachModel true

Fit map cryosparc_P6_J648_005_volume_map.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 287423 points  
correlation = 1, correlation about mean = 1, overlap = 2.043e+04  
steps = 40, shift = 0.00291, angle = 0.00434 degrees  
  
Position of cryosparc_P6_J648_005_volume_map.mrc (#2.1) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
1.00000000 -0.00000000 0.00000000 0.00000000  
0.00000000 1.00000000 0.00000000 0.00000000  
0.00000000 0.00000000 1.00000000 0.00000000  
Axis 0.69737200 0.69737200 0.16536195  
Axis point 0.00000000 0.00000000 0.00000000  
Rotation angle (degrees) 0.00000000  
Shift along axis 0.00000000  
  
Fit map cryosparc_P6_J648_005_volume_map_sharp.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 327001 points  
correlation = 0.9551, correlation about mean = 0.8117, overlap = 3.151e+04  
steps = 44, shift = 0.0147, angle = 0.0043 degrees  
  
Position of cryosparc_P6_J648_005_volume_map_sharp.mrc (#2.2) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
1.00000000 0.00003731 0.00001426 -0.00897842  
-0.00003731 1.00000000 -0.00002393 0.00798069  
-0.00001426 0.00002393 1.00000000 0.00405655  
Axis 0.51396807 0.30632924 -0.80124854  
Axis point 258.41725237 165.99244953 0.00000000  
Rotation angle (degrees) 0.00266780  
Shift along axis -0.00542021  
  
Fit map cryosparc_P6_J652_007_volume_map.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 275963 points  
correlation = 0.991, correlation about mean = 0.9203, overlap = 1.97e+04  
steps = 28, shift = 0.013, angle = 0.0103 degrees  
  
Position of cryosparc_P6_J652_007_volume_map.mrc (#2.3) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
0.99999236 -0.00048149 -0.00387855 0.66211387  
0.00049103 0.99999686 0.00245834 -0.38970121  
0.00387735 -0.00246022 0.99998946 -0.22378510  
Axis -0.53257873 -0.83980421 0.10530330  
Axis point 56.83298698 0.00000000 163.88243744  
Rotation angle (degrees) 0.26457470  
Shift along axis -0.04892036  
  
Fit map cryosparc_P6_J652_007_volume_map_sharp.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 327535 points  
correlation = 0.9236, correlation about mean = 0.7144, overlap = 3.248e+04  
steps = 44, shift = 0.0051, angle = 0.00282 degrees  
  
Position of cryosparc_P6_J652_007_volume_map_sharp.mrc (#2.4) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
0.99999190 -0.00041571 -0.00400385 0.66014082  
0.00042658 0.99999623 0.00271405 -0.41676066  
0.00400271 -0.00271573 0.99998830 -0.19407633  
Axis -0.55915641 -0.82451224 0.08673915  
Axis point 48.03321186 0.00000000 158.86735414  
Rotation angle (degrees) 0.27819120  
Shift along axis -0.04233173  
  
Fit map cryosparc_P6_J653_007_volume_map.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 270146 points  
correlation = 0.9883, correlation about mean = 0.8971, overlap = 1.931e+04  
steps = 40, shift = 0.0196, angle = 0.0127 degrees  
  
Position of cryosparc_P6_J653_007_volume_map.mrc (#2.5) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
0.99999756 -0.00004113 -0.00220725 0.29657418  
0.00004939 0.99999299 0.00374270 -0.55524964  
0.00220708 -0.00374280 0.99999056 0.20224771  
Axis -0.86132918 -0.50794052 0.01041481  
Axis point 0.00000000 53.59196017 144.56154177  
Rotation angle (degrees) 0.24896952  
Shift along axis 0.02869216  
  
Fit map cryosparc_P6_J653_007_volume_map_sharp.mrc in map
cryosparc_P6_J648_005_volume_map.mrc using 330243 points  
correlation = 0.9073, correlation about mean = 0.6857, overlap = 3.427e+04  
steps = 40, shift = 0.0111, angle = 0.00809 degrees  
  
Position of cryosparc_P6_J653_007_volume_map_sharp.mrc (#2.6) relative to
cryosparc_P6_J648_005_volume_map.mrc (#2.1) coordinates:  
Matrix rotation and translation  
0.99999777 -0.00003584 -0.00211081 0.27932579  
0.00004423 0.99999210 0.00397502 -0.58702547  
0.00211065 -0.00397510 0.99998987 0.26203363  
Axis -0.88317460 -0.46896003 0.00889488  
Axis point 0.00000000 65.48223155 144.16005478  
Rotation angle (degrees) 0.25788199  
Shift along axis 0.03092879  
  

> hide #!2.6 models

> volume #2.1 level 0.1

> volume #2.3 level 0.1

> volume #2.5 level 0.1

> open 3SXU

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 119, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 154, in provider_open  
models, status = collated_open(session, database_name, ident,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 464, in collated_open  
return remember_data_format()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 97, in fetch  
return fetcher(session, ident, ignore_cache=ignore_cache, **kw)  
File "src\mmcif.pyx", line 418, in chimerax.mmcif.mmcif.fetch_mmcif  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\manager.py", line 198, in open_data  
return provider_open(self.session, [path], _return_status=True,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 194, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 465, in collated_open  
return remember_data_format()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 43, in open  
return mmcif.open_mmcif(session, data, file_name, **kw)  
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif  
MemoryError: not enough memory  
  
MemoryError: not enough memory  
  
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif  
  
See log for complete Python traceback.  
  

> open 3SXU

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 119, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 154, in provider_open  
models, status = collated_open(session, database_name, ident,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 464, in collated_open  
return remember_data_format()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 97, in fetch  
return fetcher(session, ident, ignore_cache=ignore_cache, **kw)  
File "src\mmcif.pyx", line 418, in chimerax.mmcif.mmcif.fetch_mmcif  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\manager.py", line 198, in open_data  
return provider_open(self.session, [path], _return_status=True,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 194, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 465, in collated_open  
return remember_data_format()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 43, in open  
return mmcif.open_mmcif(session, data, file_name, **kw)  
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif  
MemoryError: not enough memory  
  
MemoryError: not enough memory  
  
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 511.69
OpenGL renderer: NVIDIA GeForce GTX 1050/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: zh_CN.cp936
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows

Manufacturer: Dell Inc.
Model: Inspiron 14 7000 Gaming
OS: Microsoft Windows 10 家庭中文版 (Build 19045)
Memory: 17,039,503,360
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-7700HQ CPU @ 2.80GHz
OSLanguage: zh-CN

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    comtypes: 1.1.14
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pywin32: 305
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    WMI: 1.5.1
    zipp: 3.15.0