Changes between Initial Version and Version 1 of Ticket #15510


Ignore:
Timestamp:
Jun 27, 2024, 2:38:30 PM (18 months ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #15510

    • Property Cc Tom Goddard added
    • Property Component Unassigned → Core
    • Property Owner set to Eric Pettersen
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → accepted
    • Property Summary ChimeraX bug report submission → Crash in garbage collection

  • Ticket #15510 – Description

    initial v1  
    15701570 
    15711571
    1572 > fitmap sel inMap #1
    1573 
    1574 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1575 using 1474 atoms 
    1576 average map value = 0.5776, steps = 40 
    1577 shifted from previous position = 0.0122 
    1578 rotated from previous position = 0.009 degrees 
    1579 atoms outside contour = 715, contour level = 0.55699 
    1580  
    1581 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1582 coordinates: 
    1583 Matrix rotation and translation 
    1584 -0.57503739 -0.81812000 -0.00341706 399.61793080 
    1585 0.81812237 -0.57501477 -0.00581478 127.31409135 
    1586 0.00279232 -0.00613929 0.99997726 -14.10061531 
    1587 Axis -0.00019833 -0.00379488 0.99999278 
    1588 Axis point 166.75618342 167.41773811 0.00000000 
    1589 Rotation angle (degrees) 125.10225507 
    1590 Shift along axis -14.66291014 
    1591  
    1592 
    1593 > fitmap sel inMap #1
    1594 
    1595 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1596 using 1474 atoms 
    1597 average map value = 0.5776, steps = 40 
    1598 shifted from previous position = 0.00191 
    1599 rotated from previous position = 0.00364 degrees 
    1600 atoms outside contour = 715, contour level = 0.55699 
    1601  
    1602 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1603 coordinates: 
    1604 Matrix rotation and translation 
    1605 -0.57499000 -0.81815338 -0.00339978 399.61316034 
    1606 0.81815559 -0.57496731 -0.00583391 127.30450179 
    1607 0.00281827 -0.00613599 0.99997720 -14.10539607 
    1608 Axis -0.00018461 -0.00380002 0.99999276 
    1609 Axis point 166.75406346 167.41906314 0.00000000 
    1610 Rotation angle (degrees) 125.09893543 
    1611 Shift along axis -14.66282592 
    1612  
    1613 
    1614 > fitmap sel inMap #1
    1615 
    1616 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1617 using 1474 atoms 
    1618 average map value = 0.5776, steps = 44 
    1619 shifted from previous position = 0.0153 
    1620 rotated from previous position = 0.0174 degrees 
    1621 atoms outside contour = 715, contour level = 0.55699 
    1622  
    1623 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1624 coordinates: 
    1625 Matrix rotation and translation 
    1626 -0.57475571 -0.81831762 -0.00348675 399.61349484 
    1627 0.81832050 -0.57473311 -0.00578027 127.22681023 
    1628 0.00272615 -0.00617552 0.99997722 -14.08981879 
    1629 Axis -0.00024150 -0.00379610 0.99999277 
    1630 Axis point 166.76244334 167.41646547 0.00000000 
    1631 Rotation angle (degrees) 125.08253251 
    1632 Shift along axis -14.66918932 
    1633  
    1634 
    1635 > fitmap sel inMap #1
    1636 
    1637 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1638 using 1474 atoms 
    1639 average map value = 0.5776, steps = 40 
    1640 shifted from previous position = 0.00737 
    1641 rotated from previous position = 0.0045 degrees 
    1642 atoms outside contour = 713, contour level = 0.55699 
    1643  
    1644 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1645 coordinates: 
    1646 Matrix rotation and translation 
    1647 -0.57478449 -0.81829749 -0.00346685 399.61882281 
    1648 0.81830007 -0.57476153 -0.00584786 127.24636322 
    1649 0.00279267 -0.00619818 0.99997689 -14.09818156 
    1650 Axis -0.00021406 -0.00382469 0.99999266 
    1651 Axis point 166.76174533 167.42306484 0.00000000 
    1652 Rotation angle (degrees) 125.08454618 
    1653 Shift along axis -14.67029727 
    1654  
    1655 
    1656 > fitmap sel inMap #1
    1657 
    1658 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1659 using 1474 atoms 
    1660 average map value = 0.5776, steps = 40 
    1661 shifted from previous position = 0.00561 
    1662 rotated from previous position = 0.00765 degrees 
    1663 atoms outside contour = 714, contour level = 0.55699 
    1664  
    1665 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1666 coordinates: 
    1667 Matrix rotation and translation 
    1668 -0.57483959 -0.81825896 -0.00342300 399.61162645 
    1669 0.81826097 -0.57481609 -0.00595487 127.28016154 
    1670 0.00290503 -0.00622401 0.99997641 -14.10906109 
    1671 Axis -0.00016445 -0.00386673 0.99999251 
    1672 Axis point 166.75258497 167.42944242 0.00000000 
    1673 Rotation angle (degrees) 125.08840251 
    1674 Shift along axis -14.66683181 
    1675  
    1676 
    1677 > fitmap sel inMap #1
    1678 
    1679 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1680 using 1474 atoms 
    1681 average map value = 0.5776, steps = 40 
    1682 shifted from previous position = 0.00963 
    1683 rotated from previous position = 0.0152 degrees 
    1684 atoms outside contour = 715, contour level = 0.55699 
    1685  
    1686 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1687 coordinates: 
    1688 Matrix rotation and translation 
    1689 -0.57493989 -0.81818836 -0.00345568 399.61970531 
    1690 0.81819121 -0.57491773 -0.00572237 127.27524902 
    1691 0.00269525 -0.00611743 0.99997766 -14.09023353 
    1692 Axis -0.00024142 -0.00375884 0.99999291 
    1693 Axis point 166.76191357 167.41398799 0.00000000 
    1694 Rotation angle (degrees) 125.09542915 
    1695 Shift along axis -14.66501621 
    1696  
    1697 
    1698 > fitmap sel inMap #1
    1699 
    1700 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1701 using 1474 atoms 
    1702 average map value = 0.5776, steps = 44 
    1703 shifted from previous position = 0.0166 
    1704 rotated from previous position = 0.0127 degrees 
    1705 atoms outside contour = 713, contour level = 0.55699 
    1706  
    1707 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1708 coordinates: 
    1709 Matrix rotation and translation 
    1710 -0.57478903 -0.81829431 -0.00346457 399.61578016 
    1711 0.81829688 -0.57476610 -0.00584397 127.24393344 
    1712 0.00279077 -0.00619409 0.99997692 -14.09791639 
    1713 Axis -0.00021393 -0.00382215 0.99999267 
    1714 Axis point 166.76107043 167.42037282 0.00000000 
    1715 Rotation angle (degrees) 125.08486433 
    1716 Shift along axis -14.66964885 
    1717  
    1718 
    1719 > fitmap sel inMap #1
    1720 
    1721 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1722 using 1474 atoms 
    1723 average map value = 0.5776, steps = 44 
    1724 shifted from previous position = 0.0198 
    1725 rotated from previous position = 0.00914 degrees 
    1726 atoms outside contour = 713, contour level = 0.55699 
    1727  
    1728 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1729 coordinates: 
    1730 Matrix rotation and translation 
    1731 -0.57486404 -0.81824145 -0.00350458 399.62176780 
    1732 0.81824461 -0.57484176 -0.00572017 127.26033493 
    1733 0.00266590 -0.00615592 0.99997750 -14.08056009 
    1734 Axis -0.00026627 -0.00377054 0.99999286 
    1735 Axis point 166.76294658 167.41867174 0.00000000 
    1736 Rotation angle (degrees) 125.09011881 
    1737 Shift along axis -14.66670779 
    1738  
    1739 
    1740 > fitmap sel inMap #1
    1741 
    1742 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1743 using 1474 atoms 
    1744 average map value = 0.5776, steps = 40 
    1745 shifted from previous position = 0.00202 
    1746 rotated from previous position = 0.00261 degrees 
    1747 atoms outside contour = 714, contour level = 0.55699 
    1748  
    1749 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1750 coordinates: 
    1751 Matrix rotation and translation 
    1752 -0.57488557 -0.81822641 -0.00348223 399.62061921 
    1753 0.81822936 -0.57486317 -0.00575014 127.27169673 
    1754 0.00270311 -0.00615494 0.99997741 -14.08641002 
    1755 Axis -0.00024736 -0.00377969 0.99999283 
    1756 Axis point 166.76064871 167.42071723 0.00000000 
    1757 Rotation angle (degrees) 125.09162566 
    1758 Shift along axis -14.66620648 
    1759  
    1760 
    1761 > fitmap sel inMap #1
    1762 
    1763 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1764 using 1474 atoms 
    1765 average map value = 0.5775, steps = 28 
    1766 shifted from previous position = 0.0221 
    1767 rotated from previous position = 0.0104 degrees 
    1768 atoms outside contour = 715, contour level = 0.55699 
    1769  
    1770 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1771 coordinates: 
    1772 Matrix rotation and translation 
    1773 -0.57494193 -0.81818712 -0.00340830 399.61668562 
    1774 0.81818919 -0.57491880 -0.00590156 127.28745615 
    1775 0.00286908 -0.00618168 0.99997678 -14.10969856 
    1776 Axis -0.00017119 -0.00383612 0.99999263 
    1777 Axis point 166.75811104 167.41871209 0.00000000 
    1778 Rotation angle (degrees) 125.09556902 
    1779 Shift along axis -14.66629285 
    1780  
    1781 
    1782 > fitmap sel inMap #1
    1783 
    1784 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1785 using 1474 atoms 
    1786 average map value = 0.5776, steps = 40 
    1787 shifted from previous position = 0.021 
    1788 rotated from previous position = 0.0102 degrees 
    1789 atoms outside contour = 714, contour level = 0.55699 
    1790  
    1791 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1792 coordinates: 
    1793 Matrix rotation and translation 
    1794 -0.57492880 -0.81819610 -0.00346614 399.62019252 
    1795 0.81819899 -0.57490655 -0.00573368 127.27787198 
    1796 0.00269857 -0.00613245 0.99997756 -14.08835605 
    1797 Axis -0.00024369 -0.00376722 0.99999287 
    1798 Axis point 166.76094380 167.41708421 0.00000000 
    1799 Rotation angle (degrees) 125.09465281 
    1800 Shift along axis -14.66512126 
    1801  
    1802 
    1803 > fitmap sel inMap #1
    1804 
    1805 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1806 using 1474 atoms 
    1807 average map value = 0.5776, steps = 40 
    1808 shifted from previous position = 0.0151 
    1809 rotated from previous position = 0.0127 degrees 
    1810 atoms outside contour = 714, contour level = 0.55699 
    1811  
    1812 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1813 coordinates: 
    1814 Matrix rotation and translation 
    1815 -0.57481342 -0.81827725 -0.00344692 399.61380832 
    1816 0.81827955 -0.57479016 -0.00590405 127.26383497 
    1817 0.00284990 -0.00621428 0.99997663 -14.10252330 
    1818 Axis -0.00018956 -0.00384757 0.99999258 
    1819 Axis point 166.75637991 167.42594757 0.00000000 
    1820 Rotation angle (degrees) 125.08657051 
    1821 Shift along axis -14.66782481 
    1822  
    1823 
    1824 > fitmap sel inMap #1
    1825 
    1826 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1827 using 1474 atoms 
    1828 average map value = 0.5776, steps = 44 
    1829 shifted from previous position = 0.0183 
    1830 rotated from previous position = 0.0209 degrees 
    1831 atoms outside contour = 714, contour level = 0.55699 
    1832  
    1833 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1834 coordinates: 
    1835 Matrix rotation and translation 
    1836 -0.57506424 -0.81810096 -0.00345695 399.62046704 
    1837 0.81810387 -0.57504217 -0.00570746 127.30576874 
    1838 0.00268139 -0.00611030 0.99997774 -14.08724745 
    1839 Axis -0.00024620 -0.00375154 0.99999293 
    1840 Axis point 166.76044468 167.41019981 0.00000000 
    1841 Rotation angle (degrees) 125.10413759 
    1842 Shift along axis -14.66312866 
    1843  
    1844 
    1845 > fitmap sel inMap #1
    1846 
    1847 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1848 using 1474 atoms 
    1849 average map value = 0.5775, steps = 28 
    1850 shifted from previous position = 0.0226 
    1851 rotated from previous position = 0.0139 degrees 
    1852 atoms outside contour = 715, contour level = 0.55699 
    1853  
    1854 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1855 coordinates: 
    1856 Matrix rotation and translation 
    1857 -0.57493434 -0.81819243 -0.00341466 399.61628589 
    1858 0.81819459 -0.57491129 -0.00588506 127.28413506 
    1859 0.00285199 -0.00617738 0.99997685 -14.10761823 
    1860 Axis -0.00017863 -0.00382953 0.99999265 
    1861 Axis point 166.75832231 167.41814488 0.00000000 
    1862 Rotation angle (degrees) 125.09503721 
    1863 Shift along axis -14.66633834 
    1864  
    1865 
    1866 > fitmap sel inMap #1
    1867 
    1868 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1869 using 1474 atoms 
    1870 average map value = 0.5776, steps = 40 
    1871 shifted from previous position = 0.02 
    1872 rotated from previous position = 0.00915 degrees 
    1873 atoms outside contour = 715, contour level = 0.55699 
    1874  
    1875 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1876 coordinates: 
    1877 Matrix rotation and translation 
    1878 -0.57504574 -0.81811410 -0.00342401 399.61887511 
    1879 0.81811655 -0.57502318 -0.00580260 127.31562868 
    1880 0.00277830 -0.00613800 0.99997730 -14.09814597 
    1881 Axis -0.00020498 -0.00379058 0.99999279 
    1882 Axis point 166.75660582 167.41746514 0.00000000 
    1883 Rotation angle (degrees) 125.10283994 
    1884 Shift along axis -14.66255912 
    1885  
    1886 
    1887 > fitmap sel inMap #1
    1888 
    1889 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1890 using 1474 atoms 
    1891 average map value = 0.5776, steps = 40 
    1892 shifted from previous position = 0.00734 
    1893 rotated from previous position = 0.00375 degrees 
    1894 atoms outside contour = 714, contour level = 0.55699 
    1895  
    1896 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1897 coordinates: 
    1898 Matrix rotation and translation 
    1899 -0.57501398 -0.81813662 -0.00337622 399.61170246 
    1900 0.81813871 -0.57499141 -0.00582457 127.30570195 
    1901 0.00282399 -0.00611143 0.99997734 -14.11162766 
    1902 Axis -0.00017531 -0.00378920 0.99999281 
    1903 Axis point 166.75423291 167.41566264 0.00000000 
    1904 Rotation angle (degrees) 125.10061434 
    1905 Shift along axis -14.66396908 
    1906  
    1907 
    1908 > fitmap sel inMap #1
    1909 
    1910 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1911 using 1474 atoms 
    1912 average map value = 0.5775, steps = 44 
    1913 shifted from previous position = 0.0124 
    1914 rotated from previous position = 0.00939 degrees 
    1915 atoms outside contour = 714, contour level = 0.55699 
    1916  
    1917 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1918 coordinates: 
    1919 Matrix rotation and translation 
    1920 -0.57494695 -0.81818397 -0.00331686 399.60211134 
    1921 0.81818532 -0.57492377 -0.00595304 127.29886734 
    1922 0.00296374 -0.00613649 0.99997678 -14.12952541 
    1923 Axis -0.00011211 -0.00383810 0.99999263 
    1924 Axis point 166.74852595 167.42003123 0.00000000 
    1925 Rotation angle (degrees) 125.09591848 
    1926 Shift along axis -14.66280519 
    1927  
    1928 
    1929 > fitmap sel inMap #1
    1930 
    1931 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1932 using 1474 atoms 
    1933 average map value = 0.5776, steps = 40 
    1934 shifted from previous position = 0.0182 
    1935 rotated from previous position = 0.018 degrees 
    1936 atoms outside contour = 714, contour level = 0.55699 
    1937  
    1938 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1939 coordinates: 
    1940 Matrix rotation and translation 
    1941 -0.57486493 -0.81824075 -0.00352007 399.62536905 
    1942 0.81824397 -0.57484252 -0.00573471 127.26241238 
    1943 0.00266889 -0.00617696 0.99997736 -14.07859152 
    1944 Axis -0.00027024 -0.00378183 0.99999281 
    1945 Axis point 166.76426651 167.42042115 0.00000000 
    1946 Rotation angle (degrees) 125.09018131 
    1947 Shift along axis -14.66777157 
    1948  
    1949 
    1950 > fitmap sel inMap #1
    1951 
    1952 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1953 using 1474 atoms 
    1954 average map value = 0.5776, steps = 28 
    1955 shifted from previous position = 0.0139 
    1956 rotated from previous position = 0.0219 degrees 
    1957 atoms outside contour = 713, contour level = 0.55699 
    1958  
    1959 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1960 coordinates: 
    1961 Matrix rotation and translation 
    1962 -0.57499490 -0.81815059 -0.00323765 399.59081109 
    1963 0.81815151 -0.57497205 -0.00593689 127.31151568 
    1964 0.00299571 -0.00606257 0.99997714 -14.14355657 
    1965 Axis -0.00007681 -0.00380939 0.99999274 
    1966 Axis point 166.74209703 167.41628625 0.00000000 
    1967 Rotation angle (degrees) 125.09927553 
    1968 Shift along axis -14.65912505 
    1969  
    1970 
    1971 > fitmap sel inMap #1
    1972 
    1973 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1974 using 1474 atoms 
    1975 average map value = 0.5776, steps = 28 
    1976 shifted from previous position = 0.0214 
    1977 rotated from previous position = 0.0245 degrees 
    1978 atoms outside contour = 715, contour level = 0.55699 
    1979  
    1980 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    1981 coordinates: 
    1982 Matrix rotation and translation 
    1983 -0.57486023 -0.81824398 -0.00353754 399.62606066 
    1984 0.81824745 -0.57483811 -0.00568017 127.25980362 
    1985 0.00261425 -0.00615989 0.99997761 -14.07206316 
    1986 Axis -0.00029314 -0.00375911 0.99999289 
    1987 Axis point 166.76481485 167.42009809 0.00000000 
    1988 Rotation angle (degrees) 125.08985399 
    1989 Shift along axis -14.66749163 
    1990  
    1991 
    1992 > fitmap sel inMap #1
    1993 
    1994 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    1995 using 1474 atoms 
    1996 average map value = 0.5776, steps = 40 
    1997 shifted from previous position = 0.0215 
    1998 rotated from previous position = 0.0164 degrees 
    1999 atoms outside contour = 714, contour level = 0.55699 
    2000  
    2001 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2002 coordinates: 
    2003 Matrix rotation and translation 
    2004 -0.57484795 -0.81825311 -0.00341955 399.61143972 
    2005 0.81825513 -0.57482454 -0.00594100 127.27786797 
    2006 0.00289560 -0.00621324 0.99997651 -14.10922221 
    2007 Axis -0.00016635 -0.00385889 0.99999254 
    2008 Axis point 166.75345748 167.42699646 0.00000000 
    2009 Rotation angle (degrees) 125.08898748 
    2010 Shift along axis -14.66674452 
    2011  
    2012 
    2013 > fitmap sel inMap #1
    2014 
    2015 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    2016 using 1474 atoms 
    2017 average map value = 0.5776, steps = 40 
    2018 shifted from previous position = 0.0112 
    2019 rotated from previous position = 0.00992 degrees 
    2020 atoms outside contour = 715, contour level = 0.55699 
    2021  
    2022 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2023 coordinates: 
    2024 Matrix rotation and translation 
    2025 -0.57487445 -0.81823436 -0.00345014 399.61475013 
    2026 0.81823704 -0.57485199 -0.00577378 127.26789686 
    2027 0.00274098 -0.00614223 0.99997738 -14.09387375 
    2028 Axis -0.00022515 -0.00378319 0.99999282 
    2029 Axis point 166.75831936 167.41906589 0.00000000 
    2030 Rotation angle (degrees) 125.09084597 
    2031 Shift along axis -14.66522359 
    2032  
    2033 
    2034 > fitmap sel inMap #1
    2035 
    2036 Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
    2037 using 1474 atoms 
    2038 average map value = 0.5776, steps = 28 
    2039 shifted from previous position = 0.0109 
    2040 rotated from previous position = 0.0169 degrees 
    2041 atoms outside contour = 714, contour level = 0.55699 
    2042  
    2043 Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2044 coordinates: 
    2045 Matrix rotation and translation 
    2046 -0.57496638 -0.81817044 -0.00328784 399.59705110 
    2047 0.81817149 -0.57494303 -0.00599344 127.31403343 
    2048 0.00301334 -0.00613604 0.99997664 -14.13679526 
    2049 Axis -0.00008715 -0.00385074 0.99999258 
    2050 Axis point 166.74323671 167.42328598 0.00000000 
    2051 Rotation angle (degrees) 125.09727814 
    2052 Shift along axis -14.66176694 
    2053  
    2054 
    2055 > open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
    2056 
    2057 Chain information for mono6.cif-coot-1.pdb #6 
    2058 --- 
    2059 Chain | Description 
    2060 Aa | No description available 
    2061  
    2062 
    2063 > select subtract #5
    2064 
    2065 Nothing selected 
    2066 
    2067 > select add #6
    2068 
    2069 1474 atoms, 1510 bonds, 178 residues, 1 model selected 
    2070 
    2071 > view matrix models #6,1,0,0,48.817,0,1,0,54.737,0,0,1,-12.842
    2072 
    2073 > view matrix models #6,1,0,0,51.25,0,1,0,78.485,0,0,1,-19.356
    2074 
    2075 > view matrix models #6,1,0,0,49.273,0,1,0,80.397,0,0,1,-20.936
    2076 
    2077 > ui mousemode right "translate selected models"
    2078 
    2079 > ui mousemode right "rotate selected models"
    2080 
    2081 > view matrix models
    2082 > #6,-0.9822,-0.16667,0.08663,331.16,0.17541,-0.97881,0.10562,293.51,0.067191,0.11893,0.99063,-44.019
    2083 
    2084 > ui mousemode right "translate selected models"
    2085 
    2086 > view matrix models
    2087 > #6,-0.9822,-0.16667,0.08663,345.27,0.17541,-0.97881,0.10562,283.6,0.067191,0.11893,0.99063,-42.745
    2088 
    2089 > fitmap sel inMap #1
    2090 
    2091 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2092 using 1474 atoms 
    2093 average map value = 0.578, steps = 100 
    2094 shifted from previous position = 1.55 
    2095 rotated from previous position = 8.72 degrees 
    2096 atoms outside contour = 715, contour level = 0.55699 
    2097  
    2098 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2099 coordinates: 
    2100 Matrix rotation and translation 
    2101 -0.97396366 -0.22670208 0.00098283 366.71674840 
    2102 0.22669059 -0.97394351 -0.00674013 292.56368361 
    2103 0.00248523 -0.00634184 0.99997680 -18.87501288 
    2104 Axis 0.00087846 -0.00331365 0.99999412 
    2105 Axis point 166.57071776 167.30925032 0.00000000 
    2106 Rotation angle (degrees) 166.89727290 
    2107 Shift along axis -19.52221010 
    2108  
    2109 
    2110 > fitmap sel inMap #1
    2111 
    2112 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2113 using 1474 atoms 
    2114 average map value = 0.5779, steps = 44 
    2115 shifted from previous position = 0.0173 
    2116 rotated from previous position = 0.0184 degrees 
    2117 atoms outside contour = 716, contour level = 0.55699 
    2118  
    2119 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2120 coordinates: 
    2121 Matrix rotation and translation 
    2122 -0.97394812 -0.22676744 0.00125815 366.69171679 
    2123 0.22675379 -0.97392774 -0.00689076 292.56519513 
    2124 0.00278794 -0.00642595 0.99997547 -18.91072952 
    2125 Axis 0.00102488 -0.00337313 0.99999379 
    2126 Axis point 166.55468041 167.31425625 0.00000000 
    2127 Rotation angle (degrees) 166.89348682 
    2128 Shift along axis -19.52165942 
    2129  
    2130 
    2131 > fitmap sel inMap #1
    2132 
    2133 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2134 using 1474 atoms 
    2135 average map value = 0.5779, steps = 40 
    2136 shifted from previous position = 0.0111 
    2137 rotated from previous position = 0.00511 degrees 
    2138 atoms outside contour = 716, contour level = 0.55699 
    2139  
    2140 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2141 coordinates: 
    2142 Matrix rotation and translation 
    2143 -0.97396602 -0.22669048 0.00127471 366.68317068 
    2144 0.22667683 -0.97394592 -0.00685277 292.58368623 
    2145 0.00279496 -0.00638541 0.99997571 -18.91634419 
    2146 Axis 0.00103084 -0.00335321 0.99999385 
    2147 Axis point 166.55523860 167.31585422 0.00000000 
    2148 Rotation angle (degrees) 166.89801502 
    2149 Shift along axis -19.51933051 
    2150  
    2151 
    2152 > fitmap sel inMap #1
    2153 
    2154 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2155 using 1474 atoms 
    2156 average map value = 0.578, steps = 40 
    2157 shifted from previous position = 0.0166 
    2158 rotated from previous position = 0.0102 degrees 
    2159 atoms outside contour = 717, contour level = 0.55699 
    2160  
    2161 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2162 coordinates: 
    2163 Matrix rotation and translation 
    2164 -0.97394873 -0.22676557 0.00111679 366.70668845 
    2165 0.22675302 -0.97392841 -0.00682063 292.55117728 
    2166 0.00263436 -0.00638971 0.99997612 -18.89144393 
    2167 Axis 0.00095017 -0.00334619 0.99999395 
    2168 Axis point 166.56233174 167.30817757 0.00000000 
    2169 Rotation angle (degrees) 166.89356673 
    2170 Shift along axis -19.52182781 
    2171  
    2172 
    2173 > fitmap sel inMap #1
    2174 
    2175 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2176 using 1474 atoms 
    2177 average map value = 0.578, steps = 40 
    2178 shifted from previous position = 0.015 
    2179 rotated from previous position = 0.0084 degrees 
    2180 atoms outside contour = 716, contour level = 0.55699 
    2181  
    2182 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2183 coordinates: 
    2184 Matrix rotation and translation 
    2185 -0.97395827 -0.22672444 0.00114948 366.69002223 
    2186 0.22671131 -0.97393716 -0.00695707 292.59308439 
    2187 0.00269686 -0.00651530 0.99997514 -18.88249602 
    2188 Axis 0.00097428 -0.00341254 0.99999370 
    2189 Axis point 166.55503254 167.32364957 0.00000000 
    2190 Rotation angle (degrees) 166.89600018 
    2191 Shift along axis -19.52360619 
    2192  
    2193 
    2194 > fitmap sel inMap #1
    2195 
    2196 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2197 using 1474 atoms 
    2198 average map value = 0.578, steps = 40 
    2199 shifted from previous position = 0.00417 
    2200 rotated from previous position = 0.0133 degrees 
    2201 atoms outside contour = 715, contour level = 0.55699 
    2202  
    2203 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2204 coordinates: 
    2205 Matrix rotation and translation 
    2206 -0.97396518 -0.22669528 0.00104267 366.70802372 
    2207 0.22668337 -0.97394509 -0.00675411 292.56402558 
    2208 0.00254663 -0.00634191 0.99997665 -18.88400422 
    2209 Axis 0.00090916 -0.00331720 0.99999408 
    2210 Axis point 166.56716537 167.30823928 0.00000000 
    2211 Rotation angle (degrees) 166.89768476 
    2212 Shift along axis -19.52098893 
    2213  
    2214 
    2215 > fitmap sel inMap #1
    2216 
    2217 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2218 using 1474 atoms 
    2219 average map value = 0.578, steps = 40 
    2220 shifted from previous position = 0.0104 
    2221 rotated from previous position = 0.0135 degrees 
    2222 atoms outside contour = 716, contour level = 0.55699 
    2223  
    2224 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2225 coordinates: 
    2226 Matrix rotation and translation 
    2227 -0.97392321 -0.22687511 0.00112942 366.71861926 
    2228 0.22686234 -0.97390259 -0.00687170 292.54420051 
    2229 0.00265896 -0.00643629 0.99997575 -18.88980428 
    2230 Axis 0.00095961 -0.00337097 0.99999386 
    2231 Axis point 166.56048730 167.31559529 0.00000000 
    2232 Rotation angle (degrees) 166.88712791 
    2233 Shift along axis -19.52393788 
    2234  
    2235 
    2236 > fitmap sel inMap #1
    2237 
    2238 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2239 using 1474 atoms 
    2240 average map value = 0.578, steps = 48 
    2241 shifted from previous position = 0.0185 
    2242 rotated from previous position = 0.0111 degrees 
    2243 atoms outside contour = 714, contour level = 0.55699 
    2244  
    2245 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2246 coordinates: 
    2247 Matrix rotation and translation 
    2248 -0.97395059 -0.22675755 0.00112825 366.69326289 
    2249 0.22674438 -0.97392899 -0.00702230 292.59993317 
    2250 0.00269119 -0.00658355 0.99997471 -18.87185839 
    2251 Axis 0.00096747 -0.00344637 0.99999359 
    2252 Axis point 166.55370690 167.33011239 0.00000000 
    2253 Rotation angle (degrees) 166.89405190 
    2254 Shift along axis -19.52538081 
    2255  
    2256 
    2257 > fitmap sel inMap #1
    2258 
    2259 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2260 using 1474 atoms 
    2261 average map value = 0.578, steps = 40 
    2262 shifted from previous position = 0.00911 
    2263 rotated from previous position = 0.0153 degrees 
    2264 atoms outside contour = 716, contour level = 0.55699 
    2265  
    2266 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2267 coordinates: 
    2268 Matrix rotation and translation 
    2269 -0.97398433 -0.22661234 0.00117221 366.68057243 
    2270 0.22659948 -0.97396425 -0.00680575 292.58730181 
    2271 0.00268395 -0.00636307 0.99997615 -18.90145073 
    2272 Axis 0.00097675 -0.00333561 0.99999396 
    2273 Axis point 166.55911185 167.31022403 0.00000000 
    2274 Rotation angle (degrees) 166.90259026 
    2275 Shift along axis -19.51913911 
    2276  
    2277 
    2278 > fitmap sel inMap #1
    2279 
    2280 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2281 using 1474 atoms 
    2282 average map value = 0.578, steps = 44 
    2283 shifted from previous position = 0.00412 
    2284 rotated from previous position = 0.0124 degrees 
    2285 atoms outside contour = 716, contour level = 0.55699 
    2286  
    2287 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2288 coordinates: 
    2289 Matrix rotation and translation 
    2290 -0.97396106 -0.22671319 0.00099136 366.71522526 
    2291 0.22670162 -0.97394088 -0.00674866 292.56173154 
    2292 0.00249554 -0.00634819 0.99997674 -18.87524062 
    2293 Axis 0.00088323 -0.00331742 0.99999411 
    2294 Axis point 166.56927493 167.30921266 0.00000000 
    2295 Rotation angle (degrees) 166.89662146 
    2296 Shift along axis -19.52178681 
    2297  
    2298 
    2299 > fitmap sel inMap #1
    2300 
    2301 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2302 using 1474 atoms 
    2303 average map value = 0.5779, steps = 40 
    2304 shifted from previous position = 0.0156 
    2305 rotated from previous position = 0.0165 degrees 
    2306 atoms outside contour = 716, contour level = 0.55699 
    2307  
    2308 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2309 coordinates: 
    2310 Matrix rotation and translation 
    2311 -0.97394114 -0.22679760 0.00122704 366.69724593 
    2312 0.22678415 -0.97392067 -0.00689141 292.55988457 
    2313 0.00275800 -0.00643355 0.99997550 -18.90477815 
    2314 Axis 0.00100942 -0.00337523 0.99999379 
    2315 Axis point 166.55530182 167.31477683 0.00000000 
    2316 Rotation angle (degrees) 166.89170695 
    2317 Shift along axis -19.52196890 
    2318  
    2319 
    2320 > fitmap sel inMap #1
    2321 
    2322 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2323 using 1474 atoms 
    2324 average map value = 0.5779, steps = 40 
    2325 shifted from previous position = 0.00675 
    2326 rotated from previous position = 0.0122 degrees 
    2327 atoms outside contour = 716, contour level = 0.55699 
    2328  
    2329 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2330 coordinates: 
    2331 Matrix rotation and translation 
    2332 -0.97389530 -0.22699452 0.00119856 366.72605771 
    2333 0.22698142 -0.97387514 -0.00682936 292.51514610 
    2334 0.00271748 -0.00637903 0.99997596 -18.90950650 
    2335 Axis 0.00099196 -0.00334579 0.99999391 
    2336 Axis point 166.55709451 167.31310947 0.00000000 
    2337 Rotation angle (degrees) 166.88011303 
    2338 Shift along axis -19.52430648 
    2339  
    2340 
    2341 > fitmap sel inMap #1
    2342 
    2343 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2344 using 1474 atoms 
    2345 average map value = 0.5779, steps = 40 
    2346 shifted from previous position = 0.00594 
    2347 rotated from previous position = 0.0106 degrees 
    2348 atoms outside contour = 716, contour level = 0.55699 
    2349  
    2350 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2351 coordinates: 
    2352 Matrix rotation and translation 
    2353 -0.97393362 -0.22683045 0.00112083 366.72068957 
    2354 0.22681782 -0.97391319 -0.00683992 292.55091351 
    2355 0.00264309 -0.00640740 0.99997598 -18.89360194 
    2356 Axis 0.00095341 -0.00335558 0.99999392 
    2357 Axis point 166.56445639 167.31494793 0.00000000 
    2358 Rotation angle (degrees) 166.88975147 
    2359 Shift along axis -19.52552979 
    2360  
    2361 
    2362 > fitmap sel inMap #1
    2363 
    2364 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2365 using 1474 atoms 
    2366 average map value = 0.578, steps = 44 
    2367 shifted from previous position = 0.0176 
    2368 rotated from previous position = 0.0128 degrees 
    2369 atoms outside contour = 716, contour level = 0.55699 
    2370  
    2371 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2372 coordinates: 
    2373 Matrix rotation and translation 
    2374 -0.97398264 -0.22661979 0.00113436 366.68342685 
    2375 0.22660721 -0.97396257 -0.00678844 292.58704759 
    2376 0.00264322 -0.00635476 0.99997632 -18.89544580 
    2377 Axis 0.00095685 -0.00332912 0.99999400 
    2378 Axis point 166.55977922 167.31103191 0.00000000 
    2379 Rotation angle (degrees) 166.90214426 
    2380 Shift along axis -19.51853071 
    2381  
    2382 
    2383 > fitmap sel inMap #1
    2384 
    2385 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2386 using 1474 atoms 
    2387 average map value = 0.578, steps = 36 
    2388 shifted from previous position = 0.0136 
    2389 rotated from previous position = 0.00587 degrees 
    2390 atoms outside contour = 715, contour level = 0.55699 
    2391  
    2392 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2393 coordinates: 
    2394 Matrix rotation and translation 
    2395 -0.97396576 -0.22669215 0.00116775 366.69485910 
    2396 0.22667919 -0.97394539 -0.00685064 292.57515404 
    2397 0.00269031 -0.00640759 0.99997585 -18.89678844 
    2398 Axis 0.00097724 -0.00335829 0.99999388 
    2399 Axis point 166.56091036 167.31237441 0.00000000 
    2400 Rotation angle (degrees) 166.89789714 
    2401 Shift along axis -19.52087629 
    2402  
    2403 
    2404 > fitmap sel inMap #1
    2405 
    2406 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2407 using 1474 atoms 
    2408 average map value = 0.5779, steps = 48 
    2409 shifted from previous position = 0.00472 
    2410 rotated from previous position = 0.00498 degrees 
    2411 atoms outside contour = 716, contour level = 0.55699 
    2412  
    2413 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2414 coordinates: 
    2415 Matrix rotation and translation 
    2416 -0.97396714 -0.22668579 0.00125157 366.68453532 
    2417 0.22667224 -0.97394685 -0.00687256 292.57767125 
    2418 0.00277688 -0.00640995 0.99997560 -18.91108190 
    2419 Axis 0.00102040 -0.00336444 0.99999382 
    2420 Axis point 166.55652981 167.31237483 0.00000000 
    2421 Rotation angle (degrees) 166.89828759 
    2422 Shift along axis -19.52116036 
    2423  
    2424 
    2425 > fitmap sel inMap #1
    2426 
    2427 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2428 using 1474 atoms 
    2429 average map value = 0.578, steps = 40 
    2430 shifted from previous position = 0.0119 
    2431 rotated from previous position = 0.0128 degrees 
    2432 atoms outside contour = 716, contour level = 0.55699 
    2433  
    2434 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2435 coordinates: 
    2436 Matrix rotation and translation 
    2437 -0.97395743 -0.22672848 0.00106220 366.70942983 
    2438 0.22671643 -0.97393734 -0.00676173 292.55937191 
    2439 0.00256759 -0.00634482 0.99997658 -18.88715340 
    2440 Axis 0.00091943 -0.00331988 0.99999407 
    2441 Axis point 166.56571600 167.30913497 0.00000000 
    2442 Rotation angle (degrees) 166.89573540 
    2443 Shift along axis -19.52114263 
    2444  
    2445 
    2446 > fitmap sel inMap #1
    2447 
    2448 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2449 using 1474 atoms 
    2450 average map value = 0.578, steps = 40 
    2451 shifted from previous position = 0.00231 
    2452 rotated from previous position = 0.00639 degrees 
    2453 atoms outside contour = 716, contour level = 0.55699 
    2454  
    2455 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2456 coordinates: 
    2457 Matrix rotation and translation 
    2458 -0.97394337 -0.22678849 0.00114101 366.70386274 
    2459 0.22677580 -0.97392317 -0.00681103 292.55495210 
    2460 0.00265592 -0.00637480 0.99997616 -18.89658351 
    2461 Axis 0.00096177 -0.00333999 0.99999396 
    2462 Axis point 166.55906905 167.31214461 0.00000000 
    2463 Rotation angle (degrees) 166.89222259 
    2464 Shift along axis -19.52091570 
    2465  
    2466 
    2467 > fitmap sel inMap #1
    2468 
    2469 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2470 using 1474 atoms 
    2471 average map value = 0.578, steps = 44 
    2472 shifted from previous position = 0.00448 
    2473 rotated from previous position = 0.00959 degrees 
    2474 atoms outside contour = 715, contour level = 0.55699 
    2475  
    2476 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2477 coordinates: 
    2478 Matrix rotation and translation 
    2479 -0.97397919 -0.22663431 0.00119561 366.67966111 
    2480 0.22662127 -0.97395913 -0.00681355 292.58692613 
    2481 0.00270866 -0.00636531 0.99997607 -18.90507025 
    2482 Axis 0.00098894 -0.00333816 0.99999394 
    2483 Axis point 166.55713217 167.31205509 0.00000000 
    2484 Rotation angle (degrees) 166.90130272 
    2485 Shift along axis -19.51903499 
    2486  
    2487 
    2488 > fitmap sel inMap #1
    2489 
    2490 Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
    2491 using 1474 atoms 
    2492 average map value = 0.5779, steps = 48 
    2493 shifted from previous position = 0.0184 
    2494 rotated from previous position = 0.0177 degrees 
    2495 atoms outside contour = 716, contour level = 0.55699 
    2496  
    2497 Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2498 coordinates: 
    2499 Matrix rotation and translation 
    2500 -0.97391049 -0.22692958 0.00115674 366.72711312 
    2501 0.22691689 -0.97389058 -0.00677190 292.51645227 
    2502 0.00266328 -0.00633274 0.99997640 -18.90703337 
    2503 Axis 0.00096763 -0.00331948 0.99999402 
    2504 Axis point 166.56221421 167.30786868 0.00000000 
    2505 Rotation angle (degrees) 166.88392311 
    2506 Shift along axis -19.52306555 
    2507  
    2508 
    2509 > open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
    2510 
    2511 Chain information for mono6.cif-coot-1.pdb #7 
    2512 --- 
    2513 Chain | Description 
    2514 Aa | No description available 
    2515  
    2516 
    2517 > select subtract #6
    2518 
    2519 Nothing selected 
    2520 
    2521 > select add #7
    2522 
    2523 1474 atoms, 1510 bonds, 178 residues, 1 model selected 
    2524 
    2525 > view matrix models #7,1,0,0,-12.051,0,1,0,27.609,0,0,1,4.6841
    2526 
    2527 > ui mousemode right "rotate selected models"
    2528 
    2529 > view matrix models
    2530 > #7,0.77906,0.59727,0.19061,-91.538,-0.61061,0.7918,0.014572,136.81,-0.14222,-0.12774,0.98156,44.141
    2531 
    2532 > ui mousemode right "translate selected models"
    2533 
    2534 > view matrix models
    2535 > #7,0.77906,0.59727,0.19061,-94.67,-0.61061,0.7918,0.014572,139.04,-0.14222,-0.12774,0.98156,43.486
    2536 
    2537 > fitmap sel inMap #1
    2538 
    2539 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2540 using 1474 atoms 
    2541 average map value = 0.5782, steps = 96 
    2542 shifted from previous position = 2.43 
    2543 rotated from previous position = 11.8 degrees 
    2544 atoms outside contour = 716, contour level = 0.55699 
    2545  
    2546 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2547 coordinates: 
    2548 Matrix rotation and translation 
    2549 0.74194729 0.67045441 0.00225931 -69.05619052 
    2550 -0.67045222 0.74192220 0.00672803 153.63770833 
    2551 0.00283461 -0.00650661 0.99997481 5.32095375 
    2552 Axis -0.00986944 -0.00042902 -0.99995120 
    2553 Axis point 165.02808220 166.58637667 0.00000000 
    2554 Rotation angle (degrees) 42.10458803 
    2555 Shift along axis -4.70506141 
    2556  
    2557 
    2558 > fitmap sel inMap #1
    2559 
    2560 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2561 using 1474 atoms 
    2562 average map value = 0.5782, steps = 44 
    2563 shifted from previous position = 0.0173 
    2564 rotated from previous position = 0.0114 degrees 
    2565 atoms outside contour = 718, contour level = 0.55699 
    2566  
    2567 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2568 coordinates: 
    2569 Matrix rotation and translation 
    2570 0.74181630 0.67059946 0.00222361 -69.05811078 
    2571 -0.67059704 0.74179132 0.00672630 153.69081665 
    2572 0.00286120 -0.00648082 0.99997491 5.31016587 
    2573 Axis -0.00984679 -0.00047537 -0.99995141 
    2574 Axis point 165.03779394 166.58899264 0.00000000 
    2575 Rotation angle (degrees) 42.11577217 
    2576 Shift along axis -4.70296726 
    2577  
    2578 
    2579 > fitmap sel inMap #1
    2580 
    2581 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2582 using 1474 atoms 
    2583 average map value = 0.5782, steps = 40 
    2584 shifted from previous position = 0.0144 
    2585 rotated from previous position = 0.0147 degrees 
    2586 atoms outside contour = 714, contour level = 0.55699 
    2587  
    2588 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2589 coordinates: 
    2590 Matrix rotation and translation 
    2591 0.74184112 0.67057154 0.00236093 -69.07502986 
    2592 -0.67057059 0.74181714 0.00651281 153.70443531 
    2593 0.00261593 -0.00641464 0.99997600 5.33961590 
    2594 Axis -0.00963869 -0.00019012 -0.99995353 
    2595 Axis point 165.06023227 166.62222900 0.00000000 
    2596 Rotation angle (degrees) 42.11356199 
    2597 Shift along axis -4.70279812 
    2598  
    2599 
    2600 > fitmap sel inMap #1
    2601 
    2602 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2603 using 1474 atoms 
    2604 average map value = 0.5782, steps = 44 
    2605 shifted from previous position = 0.0103 
    2606 rotated from previous position = 0.0168 degrees 
    2607 atoms outside contour = 718, contour level = 0.55699 
    2608  
    2609 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2610 coordinates: 
    2611 Matrix rotation and translation 
    2612 0.74193263 0.67047089 0.00218183 -69.04688884 
    2613 -0.67046828 0.74190793 0.00670142 153.65794759 
    2614 0.00287439 -0.00643486 0.99997517 5.30408423 
    2615 Axis -0.00979586 -0.00051645 -0.99995189 
    2616 Axis point 165.05228611 166.58084248 0.00000000 
    2617 Rotation angle (degrees) 42.10580933 
    2618 Shift along axis -4.70681148 
    2619  
    2620 
    2621 > fitmap sel inMap #1
    2622 
    2623 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2624 using 1474 atoms 
    2625 average map value = 0.5782, steps = 40 
    2626 shifted from previous position = 0.00889 
    2627 rotated from previous position = 0.00747 degrees 
    2628 atoms outside contour = 718, contour level = 0.55699 
    2629  
    2630 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2631 coordinates: 
    2632 Matrix rotation and translation 
    2633 0.74186352 0.67054713 0.00224852 -69.06581999 
    2634 -0.67054508 0.74183892 0.00665678 153.68614061 
    2635 0.00279565 -0.00644616 0.99997532 5.31500814 
    2636 Axis -0.00976988 -0.00040795 -0.99995219 
    2637 Axis point 165.04943816 166.60580545 0.00000000 
    2638 Rotation angle (degrees) 42.11170355 
    2639 Shift along axis -4.70268573 
    2640  
    2641 
    2642 > fitmap sel inMap #1
    2643 
    2644 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2645 using 1474 atoms 
    2646 average map value = 0.5782, steps = 40 
    2647 shifted from previous position = 0.00151 
    2648 rotated from previous position = 0.0071 degrees 
    2649 atoms outside contour = 718, contour level = 0.55699 
    2650  
    2651 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2652 coordinates: 
    2653 Matrix rotation and translation 
    2654 0.74191059 0.67049538 0.00214939 -69.04888257 
    2655 -0.67049276 0.74188643 0.00663215 153.67702831 
    2656 0.00285222 -0.00636161 0.99997570 5.29579750 
    2657 Axis -0.00968924 -0.00052409 -0.99995292 
    2658 Axis point 165.06659634 166.58791974 0.00000000 
    2659 Rotation angle (degrees) 42.10764698 
    2660 Shift along axis -4.70705807 
    2661  
    2662 
    2663 > fitmap sel inMap #1
    2664 
    2665 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2666 using 1474 atoms 
    2667 average map value = 0.5782, steps = 40 
    2668 shifted from previous position = 0.00171 
    2669 rotated from previous position = 0.00272 degrees 
    2670 atoms outside contour = 718, contour level = 0.55699 
    2671  
    2672 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2673 coordinates: 
    2674 Matrix rotation and translation 
    2675 0.74190256 0.67050426 0.00215362 -69.04839319 
    2676 -0.67050153 0.74187809 0.00667787 153.67334779 
    2677 0.00287982 -0.00639833 0.99997538 5.29638092 
    2678 Axis -0.00975058 -0.00054151 -0.99995232 
    2679 Axis point 165.05820678 166.58414948 0.00000000 
    2680 Rotation angle (degrees) 42.10835974 
    2681 Shift along axis -4.70608173 
    2682  
    2683 
    2684 > fitmap sel inMap #1
    2685 
    2686 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2687 using 1474 atoms 
    2688 average map value = 0.5782, steps = 28 
    2689 shifted from previous position = 0.024 
    2690 rotated from previous position = 0.0135 degrees 
    2691 atoms outside contour = 714, contour level = 0.55699 
    2692  
    2693 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2694 coordinates: 
    2695 Matrix rotation and translation 
    2696 0.74185244 0.67055909 0.00233544 -69.06795668 
    2697 -0.67055789 0.74182831 0.00654770 153.68690477 
    2698 0.00265812 -0.00642347 0.99997584 5.33553674 
    2699 Axis -0.00967146 -0.00024060 -0.99995320 
    2700 Axis point 165.04564549 166.60661988 0.00000000 
    2701 Rotation angle (degrees) 42.11260804 
    2702 Shift along axis -4.70427582 
    2703  
    2704 
    2705 > fitmap sel inMap #1
    2706 
    2707 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2708 using 1474 atoms 
    2709 average map value = 0.5782, steps = 40 
    2710 shifted from previous position = 0.0236 
    2711 rotated from previous position = 0.00804 degrees 
    2712 atoms outside contour = 717, contour level = 0.55699 
    2713  
    2714 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2715 coordinates: 
    2716 Matrix rotation and translation 
    2717 0.74177533 0.67064450 0.00230460 -69.06917014 
    2718 -0.67064290 0.74175080 0.00662158 153.71978658 
    2719 0.00273129 -0.00645729 0.99997542 5.32525926 
    2720 Axis -0.00975051 -0.00031811 -0.99995241 
    2721 Axis point 165.05286252 166.60946664 0.00000000 
    2722 Rotation angle (degrees) 42.11923073 
    2723 Shift along axis -4.70044534 
    2724  
    2725 
    2726 > fitmap sel inMap #1
    2727 
    2728 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2729 using 1474 atoms 
    2730 average map value = 0.5782, steps = 48 
    2731 shifted from previous position = 0.0216 
    2732 rotated from previous position = 0.0211 degrees 
    2733 atoms outside contour = 714, contour level = 0.55699 
    2734  
    2735 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2736 coordinates: 
    2737 Matrix rotation and translation 
    2738 0.74201519 0.67037912 0.00229981 -69.06156554 
    2739 -0.67037772 0.74199122 0.00653814 153.64407373 
    2740 0.00267660 -0.00639314 0.99997598 5.33024374 
    2741 Axis -0.00964431 -0.00028101 -0.99995345 
    2742 Axis point 165.06533240 166.60917252 0.00000000 
    2743 Rotation angle (degrees) 42.09868767 
    2744 Shift along axis -4.70712072 
    2745  
    2746 
    2747 > fitmap sel inMap #1
    2748 
    2749 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2750 using 1474 atoms 
    2751 average map value = 0.5782, steps = 40 
    2752 shifted from previous position = 0.00373 
    2753 rotated from previous position = 0.00751 degrees 
    2754 atoms outside contour = 714, contour level = 0.55699 
    2755  
    2756 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2757 coordinates: 
    2758 Matrix rotation and translation 
    2759 0.74195376 0.67044704 0.00232059 -69.06786868 
    2760 -0.67044553 0.74192914 0.00662938 153.64899774 
    2761 0.00272294 -0.00647452 0.99997533 5.33321151 
    2762 Axis -0.00977206 -0.00030005 -0.99995221 
    2763 Axis point 165.04078649 166.60822615 0.00000000 
    2764 Rotation angle (degrees) 42.10399328 
    2765 Shift along axis -4.70412357 
    2766  
    2767 
    2768 > fitmap sel inMap #1
    2769 
    2770 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2771 using 1474 atoms 
    2772 average map value = 0.5782, steps = 44 
    2773 shifted from previous position = 0.0131 
    2774 rotated from previous position = 0.00848 degrees 
    2775 atoms outside contour = 717, contour level = 0.55699 
    2776  
    2777 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2778 coordinates: 
    2779 Matrix rotation and translation 
    2780 0.74187023 0.67053964 0.00226880 -69.06663515 
    2781 -0.67053762 0.74184536 0.00668967 153.67382958 
    2782 0.00280259 -0.00648418 0.99997505 5.31929472 
    2783 Axis -0.00982286 -0.00039802 -0.99995168 
    2784 Axis point 165.03590227 166.60237836 0.00000000 
    2785 Rotation angle (degrees) 42.11115312 
    2786 Shift along axis -4.70177037 
    2787  
    2788 
    2789 > fitmap sel inMap #1
    2790 
    2791 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2792 using 1474 atoms 
    2793 average map value = 0.5782, steps = 40 
    2794 shifted from previous position = 0.00518 
    2795 rotated from previous position = 0.00507 degrees 
    2796 atoms outside contour = 718, contour level = 0.55699 
    2797  
    2798 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2799 coordinates: 
    2800 Matrix rotation and translation 
    2801 0.74181332 0.67060267 0.00224688 -69.06176439 
    2802 -0.67060048 0.74178845 0.00670073 153.69361136 
    2803 0.00282682 -0.00647744 0.99997503 5.31477747 
    2804 Axis -0.00982516 -0.00043238 -0.99995164 
    2805 Axis point 165.03857754 166.59451704 0.00000000 
    2806 Rotation angle (degrees) 42.11601671 
    2807 Shift along axis -4.70243232 
    2808  
    2809 
    2810 > fitmap sel inMap #1
    2811 
    2812 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2813 using 1474 atoms 
    2814 average map value = 0.5782, steps = 36 
    2815 shifted from previous position = 0.0167 
    2816 rotated from previous position = 0.0155 degrees 
    2817 atoms outside contour = 714, contour level = 0.55699 
    2818  
    2819 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2820 coordinates: 
    2821 Matrix rotation and translation 
    2822 0.74192276 0.67048127 0.00234097 -69.07002610 
    2823 -0.67048021 0.74189887 0.00650816 153.67789751 
    2824 0.00262684 -0.00639812 0.99997608 5.33661101 
    2825 Axis -0.00962420 -0.00021317 -0.99995366 
    2826 Axis point 165.06443261 166.61863593 0.00000000 
    2827 Rotation angle (degrees) 42.10657894 
    2828 Shift along axis -4.70438043 
    2829  
    2830 
    2831 > fitmap sel inMap #1
    2832 
    2833 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2834 using 1474 atoms 
    2835 average map value = 0.5782, steps = 40 
    2836 shifted from previous position = 0.0185 
    2837 rotated from previous position = 0.0168 degrees 
    2838 atoms outside contour = 719, contour level = 0.55699 
    2839  
    2840 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2841 coordinates: 
    2842 Matrix rotation and translation 
    2843 0.74182770 0.67058690 0.00220481 -69.05421042 
    2844 -0.67058437 0.74180279 0.00672494 153.68796433 
    2845 0.00287412 -0.00646726 0.99997496 5.30693538 
    2846 Axis -0.00983585 -0.00049902 -0.99995150 
    2847 Axis point 165.04100858 166.58466675 0.00000000 
    2848 Rotation angle (degrees) 42.11479262 
    2849 Shift along axis -4.70416519 
    2850  
    2851 
    2852 > fitmap sel inMap #1
    2853 
    2854 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2855 using 1474 atoms 
    2856 average map value = 0.5782, steps = 36 
    2857 shifted from previous position = 0.0149 
    2858 rotated from previous position = 0.0137 degrees 
    2859 atoms outside contour = 714, contour level = 0.55699 
    2860  
    2861 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2862 coordinates: 
    2863 Matrix rotation and translation 
    2864 0.74183628 0.67057693 0.00234848 -69.07290634 
    2865 -0.67057584 0.74181219 0.00653530 153.70168295 
    2866 0.00264029 -0.00642295 0.99997589 5.33707228 
    2867 Axis -0.00966158 -0.00021758 -0.99995330 
    2868 Axis point 165.05535177 166.61719577 0.00000000 
    2869 Rotation angle (degrees) 42.11398474 
    2870 Shift along axis -4.70291165 
    2871  
    2872 
    2873 > fitmap sel inMap #1
    2874 
    2875 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2876 using 1474 atoms 
    2877 average map value = 0.5782, steps = 44 
    2878 shifted from previous position = 0.0171 
    2879 rotated from previous position = 0.0138 degrees 
    2880 atoms outside contour = 718, contour level = 0.55699 
    2881  
    2882 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2883 coordinates: 
    2884 Matrix rotation and translation 
    2885 0.74183818 0.67057534 0.00219751 -69.05749950 
    2886 -0.67057277 0.74181329 0.00672313 153.68554025 
    2887 0.00287822 -0.00646106 0.99997499 5.30435066 
    2888 Axis -0.00983005 -0.00050753 -0.99995156 
    2889 Axis point 165.04084296 166.58974840 0.00000000 
    2890 Rotation angle (degrees) 42.11389536 
    2891 Shift along axis -4.70325528 
    2892  
    2893 
    2894 > fitmap sel inMap #1
    2895 
    2896 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2897 using 1474 atoms 
    2898 average map value = 0.5782, steps = 28 
    2899 shifted from previous position = 0.0223 
    2900 rotated from previous position = 0.0144 degrees 
    2901 atoms outside contour = 714, contour level = 0.55699 
    2902  
    2903 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2904 coordinates: 
    2905 Matrix rotation and translation 
    2906 0.74185455 0.67055674 0.00234102 -69.07018953 
    2907 -0.67055565 0.74183060 0.00651730 153.69418895 
    2908 0.00263358 -0.00640467 0.99997602 5.33622719 
    2909 Axis -0.00963482 -0.00021814 -0.99995356 
    2910 Axis point 165.05516789 166.61342044 0.00000000 
    2911 Rotation angle (degrees) 42.11241207 
    2912 Shift along axis -4.70402788 
    2913  
    2914 
    2915 > fitmap sel inMap #1
    2916 
    2917 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2918 using 1474 atoms 
    2919 average map value = 0.5782, steps = 40 
    2920 shifted from previous position = 0.00523 
    2921 rotated from previous position = 0.00364 degrees 
    2922 atoms outside contour = 714, contour level = 0.55699 
    2923  
    2924 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2925 coordinates: 
    2926 Matrix rotation and translation 
    2927 0.74189558 0.67051140 0.00232388 -69.06872187 
    2928 -0.67051021 0.74187168 0.00651613 153.68756906 
    2929 0.00264512 -0.00639247 0.99997607 5.33271955 
    2930 Axis -0.00962550 -0.00023954 -0.99995365 
    2931 Axis point 165.06543454 166.61628980 0.00000000 
    2932 Rotation angle (degrees) 42.10890201 
    2933 Shift along axis -4.70446542 
    2934  
    2935 
    2936 > fitmap sel inMap #1
    2937 
    2938 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2939 using 1474 atoms 
    2940 average map value = 0.5782, steps = 40 
    2941 shifted from previous position = 0.0139 
    2942 rotated from previous position = 0.0144 degrees 
    2943 atoms outside contour = 718, contour level = 0.55699 
    2944  
    2945 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2946 coordinates: 
    2947 Matrix rotation and translation 
    2948 0.74184288 0.67057012 0.00220249 -69.05459197 
    2949 -0.67056759 0.74181800 0.00672064 153.68277975 
    2950 0.00287281 -0.00646257 0.99997499 5.30640670 
    2951 Axis -0.00982939 -0.00049980 -0.99995157 
    2952 Axis point 165.04083702 166.58555847 0.00000000 
    2953 Rotation angle (degrees) 42.11349316 
    2954 Shift along axis -4.70419493 
    2955  
    2956 
    2957 > fitmap sel inMap #1
    2958 
    2959 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2960 using 1474 atoms 
    2961 average map value = 0.5782, steps = 40 
    2962 shifted from previous position = 0.017 
    2963 rotated from previous position = 0.0151 degrees 
    2964 atoms outside contour = 714, contour level = 0.55699 
    2965  
    2966 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2967 coordinates: 
    2968 Matrix rotation and translation 
    2969 0.74195086 0.67045029 0.00230868 -69.06511298 
    2970 -0.67044893 0.74192685 0.00654087 153.66491083 
    2971 0.00267246 -0.00640085 0.99997594 5.33066704 
    2972 Axis -0.00965107 -0.00027128 -0.99995339 
    2973 Axis point 165.06209551 166.61139559 0.00000000 
    2974 Rotation angle (degrees) 42.10418867 
    2975 Shift along axis -4.70555233 
    2976  
    2977 
    2978 > fitmap sel inMap #1
    2979 
    2980 Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
    2981 using 1474 atoms 
    2982 average map value = 0.5782, steps = 36 
    2983 shifted from previous position = 0.00155 
    2984 rotated from previous position = 0.00996 degrees 
    2985 atoms outside contour = 715, contour level = 0.55699 
    2986  
    2987 Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    2988 coordinates: 
    2989 Matrix rotation and translation 
    2990 0.74187361 0.67053530 0.00243829 -69.08657903 
    2991 -0.67053483 0.74184936 0.00652488 153.68939987 
    2992 0.00256632 -0.00647559 0.99997574 5.35493599 
    2993 Axis -0.00969365 -0.00009547 -0.99995301 
    2994 Axis point 165.04969682 166.63674040 0.00000000 
    2995 Rotation angle (degrees) 42.11080842 
    2996 Shift along axis -4.69965545 
    2997  
    2998 
    2999 > open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
    3000 
    3001 Chain information for mono6.cif-coot-1.pdb #8 
    3002 --- 
    3003 Chain | Description 
    3004 Aa | No description available 
    3005  
    3006 
    3007 > select add #8
    3008 
    3009 2948 atoms, 3020 bonds, 356 residues, 2 models selected 
    3010 
    3011 > select subtract #7
    3012 
    3013 1474 atoms, 1510 bonds, 178 residues, 1 model selected 
    3014 
    3015 > view matrix models #8,1,0,0,-29.374,0,1,0,31.949,0,0,1,6.4455
    3016 
    3017 > view matrix models #8,1,0,0,-25.568,0,1,0,46.866,0,0,1,8.8253
    3018 
    3019 > ui mousemode right "rotate selected models"
    3020 
    3021 > view matrix models
    3022 > #8,0.99985,-0.0032699,-0.016774,-22.223,0.0026658,0.99935,-0.035908,52.793,0.016881,0.035858,0.99921,1.982
    3023 
    3024 > view matrix models
    3025 > #8,-0.066514,0.99604,-0.05901,4.0545,-0.9927,-0.072024,-0.096766,340.05,-0.10063,0.052142,0.99356,17.18
    3026 
    3027 > ui mousemode right "translate selected models"
    3028 
    3029 > view matrix models
    3030 > #8,-0.066514,0.99604,-0.05901,9.6913,-0.9927,-0.072024,-0.096766,352.4,-0.10063,0.052142,0.99356,19.046
    3031 
    3032 > view matrix models
    3033 > #8,-0.066514,0.99604,-0.05901,13.967,-0.9927,-0.072024,-0.096766,344.4,-0.10063,0.052142,0.99356,22.074
    3034 
    3035 > view matrix models
    3036 > #8,-0.066514,0.99604,-0.05901,13.919,-0.9927,-0.072024,-0.096766,346.03,-0.10063,0.052142,0.99356,20.927
    3037 
    3038 > fitmap sel inMap #1
    3039 
    3040 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3041 using 1474 atoms 
    3042 average map value = 0.578, steps = 112 
    3043 shifted from previous position = 8.05 
    3044 rotated from previous position = 12.2 degrees 
    3045 atoms outside contour = 719, contour level = 0.55699 
    3046  
    3047 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3048 coordinates: 
    3049 Matrix rotation and translation 
    3050 0.10598985 0.99434869 0.00606776 -17.74282046 
    3051 -0.99436363 0.10597113 0.00332902 314.24533809 
    3052 0.00266720 -0.00638641 0.99997604 10.17200336 
    3053 Axis -0.00488522 0.00170991 -0.99998661 
    3054 Axis point 165.87185825 167.02449439 0.00000000 
    3055 Rotation angle (degrees) 83.91703032 
    3056 Shift along axis -9.54785787 
    3057  
    3058 
    3059 > fitmap sel inMap #1
    3060 
    3061 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3062 using 1474 atoms 
    3063 average map value = 0.578, steps = 40 
    3064 shifted from previous position = 0.0059 
    3065 rotated from previous position = 0.00784 degrees 
    3066 atoms outside contour = 719, contour level = 0.55699 
    3067  
    3068 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3069 coordinates: 
    3070 Matrix rotation and translation 
    3071 0.10594552 0.99435347 0.00605937 -17.73474491 
    3072 -0.99436800 0.10592600 0.00345781 314.23681815 
    3073 0.00279644 -0.00639158 0.99997566 10.15232120 
    3074 Axis -0.00495256 0.00164070 -0.99998639 
    3075 Axis point 165.86259464 167.01528818 0.00000000 
    3076 Rotation angle (degrees) 83.91961899 
    3077 Shift along axis -9.54878372 
    3078  
    3079 
    3080 > fitmap sel inMap #1
    3081 
    3082 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3083 using 1474 atoms 
    3084 average map value = 0.578, steps = 36 
    3085 shifted from previous position = 0.0195 
    3086 rotated from previous position = 0.0126 degrees 
    3087 atoms outside contour = 713, contour level = 0.55699 
    3088  
    3089 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3090 coordinates: 
    3091 Matrix rotation and translation 
    3092 0.10604837 0.99434283 0.00600576 -17.74634670 
    3093 -0.99435752 0.10603018 0.00327167 314.23338500 
    3094 0.00261637 -0.00631883 0.99997661 10.17130852 
    3095 Axis -0.00482243 0.00170430 -0.99998692 
    3096 Axis point 165.87412612 167.02071021 0.00000000 
    3097 Rotation angle (degrees) 83.91362694 
    3098 Shift along axis -9.55004608 
    3099  
    3100 
    3101 > fitmap sel inMap #1
    3102 
    3103 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3104 using 1474 atoms 
    3105 average map value = 0.578, steps = 40 
    3106 shifted from previous position = 0.00875 
    3107 rotated from previous position = 0.00248 degrees 
    3108 atoms outside contour = 717, contour level = 0.55699 
    3109  
    3110 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3111 coordinates: 
    3112 Matrix rotation and translation 
    3113 0.10606979 0.99434054 0.00600597 -17.74100936 
    3114 -0.99435534 0.10605184 0.00323417 314.23842078 
    3115 0.00257892 -0.00631512 0.99997673 10.17843154 
    3116 Axis -0.00480172 0.00172324 -0.99998699 
    3117 Axis point 165.88359196 167.02047178 0.00000000 
    3118 Rotation angle (degrees) 83.91238239 
    3119 Shift along axis -9.55160257 
    3120  
    3121 
    3122 > fitmap sel inMap #1
    3123 
    3124 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3125 using 1474 atoms 
    3126 average map value = 0.578, steps = 28 
    3127 shifted from previous position = 0.0145 
    3128 rotated from previous position = 0.0144 degrees 
    3129 atoms outside contour = 718, contour level = 0.55699 
    3130  
    3131 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3132 coordinates: 
    3133 Matrix rotation and translation 
    3134 0.10600977 0.99434659 0.00606481 -17.74133740 
    3135 -0.99436111 0.10599015 0.00347098 314.22349899 
    3136 0.00280854 -0.00639857 0.99997558 10.15279355 
    3137 Axis -0.00496273 0.00163735 -0.99998635 
    3138 Axis point 165.86317001 167.01297813 0.00000000 
    3139 Rotation angle (degrees) 83.91592197 
    3140 Shift along axis -9.55011421 
    3141  
    3142 
    3143 > fitmap sel inMap #1
    3144 
    3145 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3146 using 1474 atoms 
    3147 average map value = 0.578, steps = 40 
    3148 shifted from previous position = 0.0122 
    3149 rotated from previous position = 0.011 degrees 
    3150 atoms outside contour = 715, contour level = 0.55699 
    3151  
    3152 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3153 coordinates: 
    3154 Matrix rotation and translation 
    3155 0.10616990 0.99432990 0.00599986 -17.75697857 
    3156 -0.99434424 0.10615099 0.00338807 314.20253393 
    3157 0.00273196 -0.00632564 0.99997626 10.15611221 
    3158 Axis -0.00488445 0.00164323 -0.99998672 
    3159 Axis point 165.87247362 167.01242556 0.00000000 
    3160 Rotation angle (degrees) 83.90665499 
    3161 Shift along axis -9.55293713 
    3162  
    3163 
    3164 > fitmap sel inMap #1
    3165 
    3166 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3167 using 1474 atoms 
    3168 average map value = 0.578, steps = 40 
    3169 shifted from previous position = 0.00831 
    3170 rotated from previous position = 0.0146 degrees 
    3171 atoms outside contour = 719, contour level = 0.55699 
    3172  
    3173 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3174 coordinates: 
    3175 Matrix rotation and translation 
    3176 0.10592583 0.99435560 0.00605436 -17.73103870 
    3177 -0.99437040 0.10590704 0.00334518 314.25234699 
    3178 0.00268510 -0.00637462 0.99997607 10.16770376 
    3179 Axis -0.00488739 0.00169416 -0.99998662 
    3180 Axis point 165.87024015 167.02073574 0.00000000 
    3181 Rotation angle (degrees) 83.92072075 
    3182 Shift along axis -9.54851554 
    3183  
    3184 
    3185 > fitmap sel inMap #1
    3186 
    3187 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3188 using 1474 atoms 
    3189 average map value = 0.578, steps = 48 
    3190 shifted from previous position = 0.00943 
    3191 rotated from previous position = 0.0189 degrees 
    3192 atoms outside contour = 719, contour level = 0.55699 
    3193  
    3194 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3195 coordinates: 
    3196 Matrix rotation and translation 
    3197 0.10603544 0.99434376 0.00608016 -17.75121457 
    3198 -0.99435785 0.10601459 0.00365487 314.19652184 
    3199 0.00298961 -0.00643340 0.99997483 10.13084018 
    3200 Axis -0.00507272 0.00155403 -0.99998593 
    3201 Axis point 165.84671996 167.00538434 0.00000000 
    3202 Rotation angle (degrees) 83.91449997 
    3203 Shift along axis -9.55237886 
    3204  
    3205 
    3206 > fitmap sel inMap #1
    3207 
    3208 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3209 using 1474 atoms 
    3210 average map value = 0.578, steps = 28 
    3211 shifted from previous position = 0.0197 
    3212 rotated from previous position = 0.0238 degrees 
    3213 atoms outside contour = 715, contour level = 0.55699 
    3214  
    3215 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3216 coordinates: 
    3217 Matrix rotation and translation 
    3218 0.10630036 0.99431626 0.00595001 -17.76736101 
    3219 -0.99433036 0.10628173 0.00336510 314.18503354 
    3220 0.00271360 -0.00627399 0.99997663 10.15239188 
    3221 Axis -0.00484700 0.00162742 -0.99998693 
    3222 Axis point 165.88074715 167.01048177 0.00000000 
    3223 Rotation angle (degrees) 83.89911918 
    3224 Shift along axis -9.55482831 
    3225  
    3226 
    3227 > fitmap sel inMap #1
    3228 
    3229 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3230 using 1474 atoms 
    3231 average map value = 0.578, steps = 44 
    3232 shifted from previous position = 0.00214 
    3233 rotated from previous position = 0.00817 degrees 
    3234 atoms outside contour = 714, contour level = 0.55699 
    3235  
    3236 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3237 coordinates: 
    3238 Matrix rotation and translation 
    3239 0.10617150 0.99432991 0.00596852 -17.75427858 
    3240 -0.99434428 0.10615318 0.00330796 314.21090058 
    3241 0.00265562 -0.00628597 0.99997671 10.16290106 
    3242 Axis -0.00482422 0.00166586 -0.99998698 
    3243 Axis point 165.87921800 167.01492836 0.00000000 
    3244 Rotation angle (degrees) 83.90653281 
    3245 Shift along axis -9.55368686 
    3246  
    3247 
    3248 > fitmap sel inMap #1
    3249 
    3250 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3251 using 1474 atoms 
    3252 average map value = 0.578, steps = 28 
    3253 shifted from previous position = 0.00113 
    3254 rotated from previous position = 0.012 degrees 
    3255 atoms outside contour = 714, contour level = 0.55699 
    3256  
    3257 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3258 coordinates: 
    3259 Matrix rotation and translation 
    3260 0.10599339 0.99434869 0.00600638 -17.73722028 
    3261 -0.99436356 0.10597562 0.00320543 314.25194390 
    3262 0.00255078 -0.00631228 0.99997682 10.18126445 
    3263 Axis -0.00478581 0.00173759 -0.99998704 
    3264 Axis point 165.87966693 167.02434982 0.00000000 
    3265 Rotation angle (degrees) 83.91677672 
    3266 Shift along axis -9.55020607 
    3267  
    3268 
    3269 > fitmap sel inMap #1
    3270 
    3271 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3272 using 1474 atoms 
    3273 average map value = 0.578, steps = 40 
    3274 shifted from previous position = 0.0193 
    3275 rotated from previous position = 0.0112 degrees 
    3276 atoms outside contour = 720, contour level = 0.55699 
    3277  
    3278 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3279 coordinates: 
    3280 Matrix rotation and translation 
    3281 0.10590497 0.99435795 0.00603335 -17.72354813 
    3282 -0.99437253 0.10588604 0.00337597 314.25531371 
    3283 0.00271807 -0.00635693 0.99997609 10.15851612 
    3284 Axis -0.00489396 0.00166701 -0.99998664 
    3285 Axis point 165.87178032 167.01773171 0.00000000 
    3286 Rotation angle (degrees) 83.92192593 
    3287 Shift along axis -9.54777540 
    3288  
    3289 
    3290 > fitmap sel inMap #1
    3291 
    3292 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3293 using 1474 atoms 
    3294 average map value = 0.578, steps = 48 
    3295 shifted from previous position = 0.0209 
    3296 rotated from previous position = 0.014 degrees 
    3297 atoms outside contour = 713, contour level = 0.55699 
    3298  
    3299 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3300 coordinates: 
    3301 Matrix rotation and translation 
    3302 0.10601684 0.99434610 0.00602094 -17.74312205 
    3303 -0.99436118 0.10599932 0.00315980 314.25435857 
    3304 0.00250372 -0.00632199 0.99997688 10.18969845 
    3305 Axis -0.00476775 0.00176858 -0.99998707 
    3306 Axis point 165.88246067 167.02914175 0.00000000 
    3307 Rotation angle (degrees) 83.91541676 
    3308 Shift along axis -9.54918919 
    3309  
    3310 
    3311 > fitmap sel inMap #1
    3312 
    3313 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3314 using 1474 atoms 
    3315 average map value = 0.578, steps = 40 
    3316 shifted from previous position = 0.00461 
    3317 rotated from previous position = 0.0089 degrees 
    3318 atoms outside contour = 714, contour level = 0.55699 
    3319  
    3320 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3321 coordinates: 
    3322 Matrix rotation and translation 
    3323 0.10604251 0.99434352 0.00599428 -17.74091232 
    3324 -0.99435804 0.10602410 0.00331084 314.23092274 
    3325 0.00265658 -0.00631155 0.99997655 10.16529961 
    3326 Axis -0.00483847 0.00167831 -0.99998689 
    3327 Axis point 165.87421513 167.01635005 0.00000000 
    3328 Rotation angle (degrees) 83.91397293 
    3329 Shift along axis -9.55195041 
    3330  
    3331 
    3332 > fitmap sel inMap #1
    3333 
    3334 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3335 using 1474 atoms 
    3336 average map value = 0.578, steps = 28 
    3337 shifted from previous position = 0.0127 
    3338 rotated from previous position = 0.0171 degrees 
    3339 atoms outside contour = 717, contour level = 0.55699 
    3340  
    3341 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3342 coordinates: 
    3343 Matrix rotation and translation 
    3344 0.10597639 0.99435014 0.00606529 -17.73838050 
    3345 -0.99436432 0.10595599 0.00359265 314.20700839 
    3346 0.00292970 -0.00641185 0.99997515 10.13673692 
    3347 Axis -0.00503057 0.00157667 -0.99998610 
    3348 Axis point 165.84888877 167.00279557 0.00000000 
    3349 Rotation angle (degrees) 83.91788019 
    3350 Shift along axis -9.55196076 
    3351  
    3352 
    3353 > fitmap sel inMap #1
    3354 
    3355 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3356 using 1474 atoms 
    3357 average map value = 0.578, steps = 48 
    3358 shifted from previous position = 0.00711 
    3359 rotated from previous position = 0.00772 degrees 
    3360 atoms outside contour = 720, contour level = 0.55699 
    3361  
    3362 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3363 coordinates: 
    3364 Matrix rotation and translation 
    3365 0.10608150 0.99433935 0.00599738 -17.74161162 
    3366 -0.99435324 0.10606161 0.00354460 314.20657996 
    3367 0.00288844 -0.00633953 0.99997573 10.13258085 
    3368 Axis -0.00497010 0.00156329 -0.99998643 
    3369 Axis point 165.86589832 167.00504295 0.00000000 
    3370 Rotation angle (degrees) 83.91179235 
    3371 Shift along axis -9.55307016 
    3372  
    3373 
    3374 > fitmap sel inMap #1
    3375 
    3376 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3377 using 1474 atoms 
    3378 average map value = 0.578, steps = 40 
    3379 shifted from previous position = 0.00468 
    3380 rotated from previous position = 0.00609 degrees 
    3381 atoms outside contour = 718, contour level = 0.55699 
    3382  
    3383 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3384 coordinates: 
    3385 Matrix rotation and translation 
    3386 0.10603047 0.99434450 0.00604582 -17.74420908 
    3387 -0.99435892 0.10601094 0.00346485 314.22228587 
    3388 0.00280433 -0.00637909 0.99997572 10.15016802 
    3389 Axis -0.00494986 0.00162993 -0.99998642 
    3390 Axis point 165.86475671 167.01406773 0.00000000 
    3391 Rotation angle (degrees) 83.91472285 
    3392 Shift along axis -9.55003996 
    3393  
    3394 
    3395 > fitmap sel inMap #1
    3396 
    3397 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3398 using 1474 atoms 
    3399 average map value = 0.578, steps = 36 
    3400 shifted from previous position = 0.013 
    3401 rotated from previous position = 0.0104 degrees 
    3402 atoms outside contour = 714, contour level = 0.55699 
    3403  
    3404 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3405 coordinates: 
    3406 Matrix rotation and translation 
    3407 0.10603165 0.99434467 0.00599607 -17.73959204 
    3408 -0.99435926 0.10601336 0.00328982 314.23753551 
    3409 0.00263555 -0.00631107 0.99997661 10.16803460 
    3410 Axis -0.00482765 0.00168978 -0.99998692 
    3411 Axis point 165.87675273 167.01881544 0.00000000 
    3412 Rotation angle (degrees) 83.91459332 
    3413 Shift along axis -9.55126884 
    3414  
    3415 
    3416 > fitmap sel inMap #1
    3417 
    3418 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3419 using 1474 atoms 
    3420 average map value = 0.578, steps = 40 
    3421 shifted from previous position = 0.0104 
    3422 rotated from previous position = 0.00536 degrees 
    3423 atoms outside contour = 719, contour level = 0.55699 
    3424  
    3425 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3426 coordinates: 
    3427 Matrix rotation and translation 
    3428 0.10600019 0.99434769 0.00605082 -17.74096877 
    3429 -0.99436244 0.10598132 0.00335866 314.24084920 
    3430 0.00269840 -0.00637273 0.99997605 10.16502698 
    3431 Axis -0.00489325 0.00168570 -0.99998661 
    3432 Axis point 165.87195034 167.02123790 0.00000000 
    3433 Rotation angle (degrees) 83.91643871 
    3434 Shift along axis -9.54836279 
    3435  
    3436 
    3437 > fitmap sel inMap #1
    3438 
    3439 Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
    3440 using 1474 atoms 
    3441 average map value = 0.578, steps = 44 
    3442 shifted from previous position = 0.0135 
    3443 rotated from previous position = 0.00701 degrees 
    3444 atoms outside contour = 714, contour level = 0.55699 
    3445  
    3446 Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3447 coordinates: 
    3448 Matrix rotation and translation 
    3449 0.10601612 0.99434626 0.00600665 -17.73965497 
    3450 -0.99436103 0.10599808 0.00324581 314.24376975 
    3451 0.00259077 -0.00631689 0.99997669 10.17584323 
    3452 Axis -0.00480844 0.00171762 -0.99998696 
    3453 Axis point 165.87769099 167.02185797 0.00000000 
    3454 Rotation angle (degrees) 83.91547860 
    3455 Shift along axis -9.55065920 
    3456  
    3457 
    3458 > open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
    3459 
    3460 Chain information for mono6.cif-coot-1.pdb #9 
    3461 --- 
    3462 Chain | Description 
    3463 Aa | No description available 
    3464  
    3465 
    3466 > select add #9
    3467 
    3468 2948 atoms, 3020 bonds, 356 residues, 2 models selected 
    3469 
    3470 > select subtract #8
    3471 
    3472 1474 atoms, 1510 bonds, 178 residues, 1 model selected 
    3473 
    3474 > view matrix models #9,1,0,0,5.788,0,1,0,64.589,0,0,1,17.348
    3475 
    3476 > view matrix models #9,1,0,0,6.1042,0,1,0,68.069,0,0,1,17.208
    3477 
    3478 > ui mousemode right "rotate selected models"
    3479 
    3480 > view matrix models
    3481 > #9,-0.61464,0.7881,0.033533,122.73,-0.77506,-0.59547,-0.21141,418.52,-0.14665,-0.15593,0.97682,61.742
    3482 
    3483 > ui mousemode right "translate selected models"
    3484 
    3485 > view matrix models
    3486 > #9,-0.61464,0.7881,0.033533,130.47,-0.77506,-0.59547,-0.21141,422.55,-0.14665,-0.15593,0.97682,60.264
    3487 
    3488 > view matrix models
    3489 > #9,-0.61464,0.7881,0.033533,132.24,-0.77506,-0.59547,-0.21141,425.7,-0.14665,-0.15593,0.97682,59.723
    3490 
    3491 > fitmap sel inMap #1
    3492 
    3493 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3494 using 1474 atoms 
    3495 average map value = 0.5775, steps = 112 
    3496 shifted from previous position = 3.91 
    3497 rotated from previous position = 12.4 degrees 
    3498 atoms outside contour = 709, contour level = 0.55699 
    3499  
    3500 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3501 coordinates: 
    3502 Matrix rotation and translation 
    3503 -0.58361154 0.81200559 0.00666934 127.48424334 
    3504 -0.81202868 -0.58361549 -0.00153955 399.68108731 
    3505 0.00264221 -0.00631419 0.99997657 15.01417365 
    3506 Axis -0.00293997 0.00247969 -0.99999260 
    3507 Axis point 166.20063718 167.18521978 0.00000000 
    3508 Rotation angle (degrees) 125.70592832 
    3509 Shift along axis -14.39777734 
    3510  
    3511 
    3512 > fitmap sel inMap #1
    3513 
    3514 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3515 using 1474 atoms 
    3516 average map value = 0.5775, steps = 28 
    3517 shifted from previous position = 0.0119 
    3518 rotated from previous position = 0.0174 degrees 
    3519 atoms outside contour = 710, contour level = 0.55699 
    3520  
    3521 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3522 coordinates: 
    3523 Matrix rotation and translation 
    3524 -0.58376324 0.81189491 0.00686494 127.49802840 
    3525 -0.81191887 -0.58376860 -0.00140383 399.67117712 
    3526 0.00286778 -0.00639328 0.99997545 14.99152038 
    3527 Axis -0.00307265 0.00246157 -0.99999225 
    3528 Axis point 166.18022514 167.18462641 0.00000000 
    3529 Rotation angle (degrees) 125.71672185 
    3530 Shift along axis -14.39934172 
    3531  
    3532 
    3533 > fitmap sel inMap #1
    3534 
    3535 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3536 using 1474 atoms 
    3537 average map value = 0.5775, steps = 40 
    3538 shifted from previous position = 0.00418 
    3539 rotated from previous position = 0.0096 degrees 
    3540 atoms outside contour = 710, contour level = 0.55699 
    3541  
    3542 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3543 coordinates: 
    3544 Matrix rotation and translation 
    3545 -0.58364897 0.81197714 0.00685570 127.47447180 
    3546 -0.81200077 -0.58365488 -0.00131247 399.65549698 
    3547 0.00293566 -0.00633286 0.99997563 14.97061880 
    3548 Axis -0.00309139 0.00241383 -0.99999231 
    3549 Axis point 166.18186765 167.17686012 0.00000000 
    3550 Rotation angle (degrees) 125.70867152 
    3551 Shift along axis -14.39987626 
    3552  
    3553 
    3554 > fitmap sel inMap #1
    3555 
    3556 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3557 using 1474 atoms 
    3558 average map value = 0.5775, steps = 36 
    3559 shifted from previous position = 0.00176 
    3560 rotated from previous position = 0.00172 degrees 
    3561 atoms outside contour = 711, contour level = 0.55699 
    3562  
    3563 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3564 coordinates: 
    3565 Matrix rotation and translation 
    3566 -0.58363052 0.81199057 0.00683629 127.47455292 
    3567 -0.81201408 -0.58363637 -0.00131225 399.65608055 
    3568 0.00292437 -0.00631704 0.99997577 14.97004115 
    3569 Axis -0.00308173 0.00240879 -0.99999235 
    3570 Axis point 166.18499100 167.17613950 0.00000000 
    3571 Rotation angle (degrees) 125.70736264 
    3572 Shift along axis -14.40008054 
    3573  
    3574 
    3575 > fitmap sel inMap #1
    3576 
    3577 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3578 using 1474 atoms 
    3579 average map value = 0.5775, steps = 28 
    3580 shifted from previous position = 0.0199 
    3581 rotated from previous position = 0.0167 degrees 
    3582 atoms outside contour = 709, contour level = 0.55699 
    3583  
    3584 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3585 coordinates: 
    3586 Matrix rotation and translation 
    3587 -0.58344577 0.81212457 0.00668650 127.44062178 
    3588 -0.81214743 -0.58345056 -0.00141331 399.65436472 
    3589 0.00275346 -0.00625502 0.99997664 14.99192445 
    3590 Axis -0.00298083 0.00242140 -0.99999263 
    3591 Axis point 166.19719010 167.17454176 0.00000000 
    3592 Rotation angle (degrees) 125.69425958 
    3593 Shift along axis -14.40396783 
    3594  
    3595 
    3596 > fitmap sel inMap #1
    3597 
    3598 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3599 using 1474 atoms 
    3600 average map value = 0.5775, steps = 40 
    3601 shifted from previous position = 0.0201 
    3602 rotated from previous position = 0.0145 degrees 
    3603 atoms outside contour = 711, contour level = 0.55699 
    3604  
    3605 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3606 coordinates: 
    3607 Matrix rotation and translation 
    3608 -0.58360328 0.81201033 0.00681426 127.47267660 
    3609 -0.81203371 -0.58360904 -0.00131531 399.65523094 
    3610 0.00290882 -0.00630103 0.99997591 14.97061645 
    3611 Axis -0.00306992 0.00240474 -0.99999240 
    3612 Axis point 166.18815499 167.17476905 0.00000000 
    3613 Rotation angle (degrees) 125.70543228 
    3614 Shift along axis -14.40076471 
    3615  
    3616 
    3617 > fitmap sel inMap #1
    3618 
    3619 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3620 using 1474 atoms 
    3621 average map value = 0.5775, steps = 28 
    3622 shifted from previous position = 0.0132 
    3623 rotated from previous position = 0.0126 degrees 
    3624 atoms outside contour = 710, contour level = 0.55699 
    3625  
    3626 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3627 coordinates: 
    3628 Matrix rotation and translation 
    3629 -0.58348064 0.81209966 0.00667002 127.45611927 
    3630 -0.81212232 -0.58348559 -0.00137984 399.65467195 
    3631 0.00277130 -0.00622198 0.99997680 14.98286930 
    3632 Axis -0.00298119 0.00240035 -0.99999268 
    3633 Axis point 166.19952698 167.17228215 0.00000000 
    3634 Rotation angle (degrees) 125.69671936 
    3635 Shift along axis -14.40342004 
    3636  
    3637 
    3638 > fitmap sel inMap #1
    3639 
    3640 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3641 using 1474 atoms 
    3642 average map value = 0.5775, steps = 28 
    3643 shifted from previous position = 0.013 
    3644 rotated from previous position = 0.0115 degrees 
    3645 atoms outside contour = 711, contour level = 0.55699 
    3646  
    3647 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3648 coordinates: 
    3649 Matrix rotation and translation 
    3650 -0.58358008 0.81202693 0.00682349 127.46514201 
    3651 -0.81205044 -0.58358571 -0.00134014 399.65892020 
    3652 0.00289386 -0.00632309 0.99997582 14.97556659 
    3653 Axis -0.00306815 0.00241959 -0.99999237 
    3654 Axis point 166.18900423 167.17750385 0.00000000 
    3655 Rotation angle (degrees) 125.70379424 
    3656 Shift along axis -14.39952591 
    3657  
    3658 
    3659 > fitmap sel inMap #1
    3660 
    3661 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3662 using 1474 atoms 
    3663 average map value = 0.5775, steps = 28 
    3664 shifted from previous position = 0.0169 
    3665 rotated from previous position = 0.00476 degrees 
    3666 atoms outside contour = 711, contour level = 0.55699 
    3667  
    3668 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3669 coordinates: 
    3670 Matrix rotation and translation 
    3671 -0.58354405 0.81205340 0.00675348 127.45555444 
    3672 -0.81207647 -0.58354948 -0.00134031 399.64702435 
    3673 0.00285259 -0.00626647 0.99997629 14.97819130 
    3674 Axis -0.00303309 0.00240182 -0.99999252 
    3675 Axis point 166.18699286 167.17196213 0.00000000 
    3676 Rotation angle (degrees) 125.70122832 
    3677 Shift along axis -14.40478335 
    3678  
    3679 
    3680 > fitmap sel inMap #1
    3681 
    3682 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3683 using 1474 atoms 
    3684 average map value = 0.5775, steps = 44 
    3685 shifted from previous position = 0.0164 
    3686 rotated from previous position = 0.0109 degrees 
    3687 atoms outside contour = 710, contour level = 0.55699 
    3688  
    3689 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3690 coordinates: 
    3691 Matrix rotation and translation 
    3692 -0.58368351 0.81195254 0.00682870 127.48825507 
    3693 -0.81197619 -0.58368893 -0.00137625 399.66694515 
    3694 0.00286839 -0.00634803 0.99997573 14.98211792 
    3695 Axis -0.00306155 0.00243870 -0.99999234 
    3696 Axis point 166.18666531 167.18083683 0.00000000 
    3697 Rotation angle (degrees) 125.71108777 
    3698 Shift along axis -14.39764617 
    3699  
    3700 
    3701 > fitmap sel inMap #1
    3702 
    3703 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3704 using 1474 atoms 
    3705 average map value = 0.5775, steps = 28 
    3706 shifted from previous position = 0.0225 
    3707 rotated from previous position = 0.00838 degrees 
    3708 atoms outside contour = 709, contour level = 0.55699 
    3709  
    3710 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3711 coordinates: 
    3712 Matrix rotation and translation 
    3713 -0.58363721 0.81198683 0.00670776 127.47962418 
    3714 -0.81200987 -0.58364193 -0.00143440 399.66076051 
    3715 0.00275022 -0.00628394 0.99997647 14.99527668 
    3716 Axis -0.00298615 0.00243690 -0.99999257 
    3717 Axis point 166.18858893 167.17736238 0.00000000 
    3718 Rotation angle (degrees) 125.70777010 
    3719 Shift along axis -14.40190593 
    3720  
    3721 
    3722 > fitmap sel inMap #1
    3723 
    3724 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3725 using 1474 atoms 
    3726 average map value = 0.5775, steps = 28 
    3727 shifted from previous position = 0.0232 
    3728 rotated from previous position = 0.0135 degrees 
    3729 atoms outside contour = 709, contour level = 0.55699 
    3730  
    3731 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3732 coordinates: 
    3733 Matrix rotation and translation 
    3734 -0.58381225 0.81186023 0.00679902 127.52427874 
    3735 -0.81188378 -0.58381739 -0.00140875 399.67533682 
    3736 0.00282567 -0.00634246 0.99997589 14.98729522 
    3737 Axis -0.00303845 0.00244701 -0.99999239 
    3738 Axis point 166.18704347 167.18215265 0.00000000 
    3739 Rotation angle (degrees) 125.72015721 
    3740 Shift along axis -14.39664866 
    3741  
    3742 
    3743 > fitmap sel inMap #1
    3744 
    3745 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3746 using 1474 atoms 
    3747 average map value = 0.5775, steps = 40 
    3748 shifted from previous position = 0.00219 
    3749 rotated from previous position = 0.015 degrees 
    3750 atoms outside contour = 710, contour level = 0.55699 
    3751  
    3752 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3753 coordinates: 
    3754 Matrix rotation and translation 
    3755 -0.58360234 0.81201115 0.00679617 127.47326584 
    3756 -0.81203456 -0.58360775 -0.00136465 399.66214778 
    3757 0.00285818 -0.00631514 0.99997597 14.98007386 
    3758 Axis -0.00304822 0.00242478 -0.99999241 
    3759 Axis point 166.19062008 167.17810060 0.00000000 
    3760 Rotation angle (degrees) 125.70535157 
    3761 Shift along axis -14.39943340 
    3762  
    3763 
    3764 > fitmap sel inMap #1
    3765 
    3766 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3767 using 1474 atoms 
    3768 average map value = 0.5775, steps = 28 
    3769 shifted from previous position = 0.015 
    3770 rotated from previous position = 0.00726 degrees 
    3771 atoms outside contour = 710, contour level = 0.55699 
    3772  
    3773 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3774 coordinates: 
    3775 Matrix rotation and translation 
    3776 -0.58350816 0.81207923 0.00674914 127.44774596 
    3777 -0.81210229 -0.58351354 -0.00134564 399.64691852 
    3778 0.00284545 -0.00626618 0.99997632 14.97920818 
    3779 Axis -0.00302953 0.00240346 -0.99999252 
    3780 Axis point 166.18867501 167.17213221 0.00000000 
    3781 Rotation angle (degrees) 125.69869353 
    3782 Shift along axis -14.40466677 
    3783  
    3784 
    3785 > fitmap sel inMap #1
    3786 
    3787 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3788 using 1474 atoms 
    3789 average map value = 0.5775, steps = 44 
    3790 shifted from previous position = 0.0164 
    3791 rotated from previous position = 0.0103 degrees 
    3792 atoms outside contour = 710, contour level = 0.55699 
    3793  
    3794 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3795 coordinates: 
    3796 Matrix rotation and translation 
    3797 -0.58363264 0.81198900 0.00684108 127.47436928 
    3798 -0.81201262 -0.58363834 -0.00133914 399.65966431 
    3799 0.00290535 -0.00633661 0.99997570 14.97552048 
    3800 Axis -0.00307723 0.00242346 -0.99999233 
    3801 Axis point 166.18557568 167.17817986 0.00000000 
    3802 Rotation angle (degrees) 125.70750942 
    3803 Shift along axis -14.39911646 
    3804  
    3805 
    3806 > fitmap sel inMap #1
    3807 
    3808 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3809 using 1474 atoms 
    3810 average map value = 0.5775, steps = 28 
    3811 shifted from previous position = 0.00969 
    3812 rotated from previous position = 0.0138 degrees 
    3813 atoms outside contour = 709, contour level = 0.55699 
    3814  
    3815 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3816 coordinates: 
    3817 Matrix rotation and translation 
    3818 -0.58362403 0.81199696 0.00662772 127.49890163 
    3819 -0.81201955 -0.58362843 -0.00145024 399.67103350 
    3820 0.00269053 -0.00622823 0.99997698 14.99465598 
    3821 Axis -0.00294206 0.00242433 -0.99999273 
    3822 Axis point 166.20324290 167.17662927 0.00000000 
    3823 Rotation angle (degrees) 125.70681047 
    3824 Shift along axis -14.40072085 
    3825  
    3826 
    3827 > fitmap sel inMap #1
    3828 
    3829 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3830 using 1474 atoms 
    3831 average map value = 0.5775, steps = 44 
    3832 shifted from previous position = 0.005 
    3833 rotated from previous position = 0.0085 degrees 
    3834 atoms outside contour = 709, contour level = 0.55699 
    3835  
    3836 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3837 coordinates: 
    3838 Matrix rotation and translation 
    3839 -0.58351562 0.81207448 0.00667521 127.46128348 
    3840 -0.81209724 -0.58352043 -0.00140490 399.65887021 
    3841 0.00275424 -0.00624070 0.99997673 14.98808845 
    3842 Axis -0.00297737 0.00241412 -0.99999265 
    3843 Axis point 166.19782795 167.17488249 0.00000000 
    3844 Rotation angle (degrees) 125.69918503 
    3845 Shift along axis -14.40265364 
    3846  
    3847 
    3848 > fitmap sel inMap #1
    3849 
    3850 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3851 using 1474 atoms 
    3852 average map value = 0.5775, steps = 40 
    3853 shifted from previous position = 0.0123 
    3854 rotated from previous position = 0.0127 degrees 
    3855 atoms outside contour = 710, contour level = 0.55699 
    3856  
    3857 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3858 coordinates: 
    3859 Matrix rotation and translation 
    3860 -0.58363944 0.81198421 0.00682903 127.47608142 
    3861 -0.81200781 -0.58364498 -0.00135767 399.66127840 
    3862 0.00288332 -0.00633762 0.99997576 14.97928353 
    3863 Axis -0.00306646 0.00242962 -0.99999235 
    3864 Axis point 166.18590108 167.17889107 0.00000000 
    3865 Rotation angle (degrees) 125.70798170 
    3866 Shift along axis -14.39904557 
    3867  
    3868 
    3869 > fitmap sel inMap #1
    3870 
    3871 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3872 using 1474 atoms 
    3873 average map value = 0.5775, steps = 40 
    3874 shifted from previous position = 0.0114 
    3875 rotated from previous position = 0.0122 degrees 
    3876 atoms outside contour = 710, contour level = 0.55699 
    3877  
    3878 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3879 coordinates: 
    3880 Matrix rotation and translation 
    3881 -0.58354900 0.81205057 0.00666570 127.47202099 
    3882 -0.81207336 -0.58355360 -0.00143437 399.66420100 
    3883 0.00272501 -0.00625006 0.99997675 14.99353376 
    3884 Axis -0.00296508 0.00242633 -0.99999266 
    3885 Axis point 166.19952183 167.17649488 0.00000000 
    3886 Rotation angle (degrees) 125.70153199 
    3887 Shift along axis -14.40167216 
    3888  
    3889 
    3890 > fitmap sel inMap #1
    3891 
    3892 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3893 using 1474 atoms 
    3894 average map value = 0.5775, steps = 40 
    3895 shifted from previous position = 0.00351 
    3896 rotated from previous position = 0.00232 degrees 
    3897 atoms outside contour = 710, contour level = 0.55699 
    3898  
    3899 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3900 coordinates: 
    3901 Matrix rotation and translation 
    3902 -0.58352087 0.81207093 0.00664821 127.46736915 
    3903 -0.81209364 -0.58352535 -0.00144559 399.66207195 
    3904 0.00270548 -0.00624250 0.99997685 14.99645588 
    3905 Axis -0.00295344 0.00242753 -0.99999269 
    3906 Axis point 166.20112392 167.17519515 0.00000000 
    3907 Rotation angle (degrees) 125.69953933 
    3908 Shift along axis -14.40262290 
    3909  
    3910 
    3911 > fitmap sel inMap #1
    3912 
    3913 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3914 using 1474 atoms 
    3915 average map value = 0.5775, steps = 40 
    3916 shifted from previous position = 0.00272 
    3917 rotated from previous position = 0.00999 degrees 
    3918 atoms outside contour = 710, contour level = 0.55699 
    3919  
    3920 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3921 coordinates: 
    3922 Matrix rotation and translation 
    3923 -0.58365601 0.81197346 0.00669038 127.49183738 
    3924 -0.81199651 -0.58366042 -0.00147554 399.67222474 
    3925 0.00270681 -0.00629378 0.99997653 15.00178586 
    3926 Axis -0.00296692 0.00245297 -0.99999259 
    3927 Axis point 166.19493161 167.18094224 0.00000000 
    3928 Rotation angle (degrees) 125.70908382 
    3929 Shift along axis -14.39955076 
    3930  
    3931 
    3932 > fitmap sel inMap #1
    3933 
    3934 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3935 using 1474 atoms 
    3936 average map value = 0.5775, steps = 40 
    3937 shifted from previous position = 0.0173 
    3938 rotated from previous position = 0.0121 degrees 
    3939 atoms outside contour = 709, contour level = 0.55699 
    3940  
    3941 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3942 coordinates: 
    3943 Matrix rotation and translation 
    3944 -0.58377797 0.81188491 0.00679506 127.51743440 
    3945 -0.81190833 -0.58378333 -0.00137278 399.66932836 
    3946 0.00285231 -0.00631836 0.99997597 14.97989601 
    3947 Axis -0.00304568 0.00242810 -0.99999241 
    3948 Axis point 166.18728323 167.17908473 0.00000000 
    3949 Rotation angle (degrees) 125.71774325 
    3950 Shift along axis -14.39772393 
    3951  
    3952 
    3953 > fitmap sel inMap #1
    3954 
    3955 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3956 using 1474 atoms 
    3957 average map value = 0.5775, steps = 40 
    3958 shifted from previous position = 0.00554 
    3959 rotated from previous position = 0.0125 degrees 
    3960 atoms outside contour = 710, contour level = 0.55699 
    3961  
    3962 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3963 coordinates: 
    3964 Matrix rotation and translation 
    3965 -0.58360346 0.81201064 0.00676187 127.47716197 
    3966 -0.81203390 -0.58360861 -0.00138937 399.66454472 
    3967 0.00281810 -0.00630171 0.99997617 14.98467334 
    3968 Axis -0.00302473 0.00242834 -0.99999248 
    3969 Axis point 166.19322064 167.17829186 0.00000000 
    3970 Rotation angle (degrees) 125.70541416 
    3971 Shift along axis -14.39962147 
    3972  
    3973 
    3974 > fitmap sel inMap #1
    3975 
    3976 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3977 using 1474 atoms 
    3978 average map value = 0.5775, steps = 44 
    3979 shifted from previous position = 0.0156 
    3980 rotated from previous position = 0.00779 degrees 
    3981 atoms outside contour = 708, contour level = 0.55699 
    3982  
    3983 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    3984 coordinates: 
    3985 Matrix rotation and translation 
    3986 -0.58349563 0.81208827 0.00674419 127.44036324 
    3987 -0.81211136 -0.58350088 -0.00136530 399.65214306 
    3988 0.00282649 -0.00627368 0.99997632 14.98347356 
    3989 Axis -0.00302201 0.00241206 -0.99999252 
    3990 Axis point 166.18836330 167.17605497 0.00000000 
    3991 Rotation angle (degrees) 125.69780433 
    3992 Shift along axis -14.40450231 
    3993  
    3994 
    3995 > fitmap sel inMap #1
    3996 
    3997 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    3998 using 1474 atoms 
    3999 average map value = 0.5775, steps = 40 
    4000 shifted from previous position = 0.00841 
    4001 rotated from previous position = 0.0047 degrees 
    4002 atoms outside contour = 709, contour level = 0.55699 
    4003  
    4004 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4005 coordinates: 
    4006 Matrix rotation and translation 
    4007 -0.58355886 0.81204276 0.00675410 127.46208897 
    4008 -0.81206584 -0.58356428 -0.00134235 399.65021478 
    4009 0.00285141 -0.00626812 0.99997629 14.97737403 
    4010 Axis -0.00303288 0.00240296 -0.99999251 
    4011 Axis point 166.18878410 167.17262096 0.00000000 
    4012 Rotation angle (degrees) 125.70227277 
    4013 Shift along axis -14.40349650 
    4014  
    4015 
    4016 > fitmap sel inMap #1
    4017 
    4018 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4019 using 1474 atoms 
    4020 average map value = 0.5775, steps = 56 
    4021 shifted from previous position = 0.00776 
    4022 rotated from previous position = 0.00929 degrees 
    4023 atoms outside contour = 708, contour level = 0.55699 
    4024  
    4025 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4026 coordinates: 
    4027 Matrix rotation and translation 
    4028 -0.58359885 0.81201396 0.00676004 127.46869410 
    4029 -0.81203663 -0.58360525 -0.00118840 399.63373892 
    4030 0.00298019 -0.00618295 0.99997644 14.94532213 
    4031 Axis -0.00307534 0.00232740 -0.99999256 
    4032 Axis point 166.18103227 167.16424959 0.00000000 
    4033 Rotation angle (degrees) 125.70512385 
    4034 Shift along axis -14.40711324 
    4035  
    4036 
    4037 > fitmap sel inMap #1
    4038 
    4039 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4040 using 1474 atoms 
    4041 average map value = 0.5775, steps = 44 
    4042 shifted from previous position = 0.0106 
    4043 rotated from previous position = 0.00902 degrees 
    4044 atoms outside contour = 711, contour level = 0.55699 
    4045  
    4046 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4047 coordinates: 
    4048 Matrix rotation and translation 
    4049 -0.58359869 0.81201357 0.00682139 127.46919524 
    4050 -0.81203705 -0.58360436 -0.00133343 399.65925625 
    4051 0.00289823 -0.00631741 0.99997584 14.97389398 
    4052 Axis -0.00306883 0.00241564 -0.99999237 
    4053 Axis point 166.18820593 167.17752627 0.00000000 
    4054 Rotation angle (degrees) 125.70510781 
    4055 Shift along axis -14.39952690 
    4056  
    4057 
    4058 > fitmap sel inMap #1
    4059 
    4060 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4061 using 1474 atoms 
    4062 average map value = 0.5775, steps = 24 
    4063 shifted from previous position = 0.00408 
    4064 rotated from previous position = 0.00302 degrees 
    4065 atoms outside contour = 710, contour level = 0.55699 
    4066  
    4067 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4068 coordinates: 
    4069 Matrix rotation and translation 
    4070 -0.58359302 0.81201742 0.00684791 127.46733807 
    4071 -0.81204094 -0.58359905 -0.00128833 399.65359817 
    4072 0.00295029 -0.00631264 0.99997572 14.96533841 
    4073 Axis -0.00309365 0.00239991 -0.99999233 
    4074 Axis point 166.18644420 167.17486740 0.00000000 
    4075 Rotation angle (degrees) 125.70472475 
    4076 Shift along axis -14.40043160 
    4077  
    4078 
    4079 > fitmap sel inMap #1
    4080 
    4081 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4082 using 1474 atoms 
    4083 average map value = 0.5775, steps = 28 
    4084 shifted from previous position = 0.0243 
    4085 rotated from previous position = 0.00963 degrees 
    4086 atoms outside contour = 710, contour level = 0.55699 
    4087  
    4088 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4089 coordinates: 
    4090 Matrix rotation and translation 
    4091 -0.58350769 0.81207959 0.00674664 127.44588549 
    4092 -0.81210270 -0.58351291 -0.00137052 399.64855462 
    4093 0.00282378 -0.00627867 0.99997630 14.98528322 
    4094 Axis -0.00302190 0.00241526 -0.99999252 
    4095 Axis point 166.18834136 167.17346800 0.00000000 
    4096 Rotation angle (degrees) 125.69865506 
    4097 Shift along axis -14.40504306 
    4098  
    4099 
    4100 > fitmap sel inMap #1
    4101 
    4102 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4103 using 1474 atoms 
    4104 average map value = 0.5775, steps = 44 
    4105 shifted from previous position = 0.0241 
    4106 rotated from previous position = 0.0201 degrees 
    4107 atoms outside contour = 710, contour level = 0.55699 
    4108  
    4109 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4110 coordinates: 
    4111 Matrix rotation and translation 
    4112 -0.58376780 0.81189159 0.00687085 127.50524011 
    4113 -0.81191530 -0.58377378 -0.00130818 399.66027060 
    4114 0.00294892 -0.00634222 0.99997554 14.96848867 
    4115 Axis -0.00310012 0.00241525 -0.99999228 
    4116 Axis point 166.17994060 167.17729032 0.00000000 
    4117 Rotation angle (degrees) 125.71706245 
    4118 Shift along axis -14.39837622 
    4119  
    4120 
    4121 > fitmap sel inMap #1
    4122 
    4123 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4124 using 1474 atoms 
    4125 average map value = 0.5775, steps = 40 
    4126 shifted from previous position = 0.0182 
    4127 rotated from previous position = 0.0177 degrees 
    4128 atoms outside contour = 709, contour level = 0.55699 
    4129  
    4130 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4131 coordinates: 
    4132 Matrix rotation and translation 
    4133 -0.58356364 0.81203968 0.00671005 127.46863742 
    4134 -0.81206260 -0.58356869 -0.00138209 399.65595136 
    4135 0.00279346 -0.00625552 0.99997653 14.98436640 
    4136 Axis -0.00300067 0.00241152 -0.99999259 
    4137 Axis point 166.19308742 167.17398779 0.00000000 
    4138 Rotation angle (degrees) 125.70258875 
    4139 Shift along axis -14.40296695 
    4140  
    4141 
    4142 > fitmap sel inMap #1
    4143 
    4144 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4145 using 1474 atoms 
    4146 average map value = 0.5775, steps = 40 
    4147 shifted from previous position = 0.00599 
    4148 rotated from previous position = 0.0119 degrees 
    4149 atoms outside contour = 710, contour level = 0.55699 
    4150  
    4151 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4152 coordinates: 
    4153 Matrix rotation and translation 
    4154 -0.58365463 0.81197454 0.00667965 127.49017572 
    4155 -0.81199773 -0.58365851 -0.00155561 399.68240302 
    4156 0.00263552 -0.00633180 0.99997648 15.01699210 
    4157 Axis -0.00294103 0.00249025 -0.99999257 
    4158 Axis point 166.19727108 167.18657733 0.00000000 
    4159 Rotation angle (degrees) 125.70896951 
    4160 Shift along axis -14.39652337 
    4161  
    4162 
    4163 > fitmap sel inMap #1
    4164 
    4165 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4166 using 1474 atoms 
    4167 average map value = 0.5775, steps = 40 
    4168 shifted from previous position = 0.00549 
    4169 rotated from previous position = 0.00901 degrees 
    4170 atoms outside contour = 709, contour level = 0.55699 
    4171  
    4172 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4173 coordinates: 
    4174 Matrix rotation and translation 
    4175 -0.58364607 0.81198035 0.00672109 127.48636016 
    4176 -0.81200340 -0.58365101 -0.00140418 399.66071150 
    4177 0.00278261 -0.00627709 0.99997642 14.98853751 
    4178 Axis -0.00300057 0.00242518 -0.99999256 
    4179 Axis point 166.19040712 167.17601307 0.00000000 
    4180 Rotation angle (degrees) 125.70840454 
    4181 Shift along axis -14.40170846 
    4182  
    4183 
    4184 > fitmap sel inMap #1
    4185 
    4186 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4187 using 1474 atoms 
    4188 average map value = 0.5775, steps = 28 
    4189 shifted from previous position = 0.00917 
    4190 rotated from previous position = 0.00483 degrees 
    4191 atoms outside contour = 710, contour level = 0.55699 
    4192  
    4193 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4194 coordinates: 
    4195 Matrix rotation and translation 
    4196 -0.58358530 0.81202372 0.00675885 127.47230039 
    4197 -0.81204697 -0.58359042 -0.00139306 399.66389074 
    4198 0.00281321 -0.00630147 0.99997619 14.98568635 
    4199 Axis -0.00302227 0.00242946 -0.99999248 
    4200 Axis point 166.19346860 167.17831128 0.00000000 
    4201 Rotation angle (degrees) 125.70413126 
    4202 Shift along axis -14.39986189 
    4203  
    4204 
    4205 > fitmap sel inMap #1
    4206 
    4207 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4208 using 1474 atoms 
    4209 average map value = 0.5775, steps = 36 
    4210 shifted from previous position = 0.00512 
    4211 rotated from previous position = 0.00592 degrees 
    4212 atoms outside contour = 709, contour level = 0.55699 
    4213  
    4214 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4215 coordinates: 
    4216 Matrix rotation and translation 
    4217 -0.58366649 0.81196554 0.00673768 127.49094209 
    4218 -0.81198861 -0.58367164 -0.00137759 399.66026094 
    4219 0.00281404 -0.00627497 0.99997635 14.98270655 
    4220 Axis -0.00301570 0.00241609 -0.99999253 
    4221 Axis point 166.18925070 167.17561188 0.00000000 
    4222 Rotation angle (degrees) 125.70985562 
    4223 Shift along axis -14.40145505 
    4224  
    4225 
    4226 > fitmap sel inMap #1
    4227 
    4228 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4229 using 1474 atoms 
    4230 average map value = 0.5775, steps = 40 
    4231 shifted from previous position = 0.00146 
    4232 rotated from previous position = 0.00174 degrees 
    4233 atoms outside contour = 708, contour level = 0.55699 
    4234  
    4235 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4236 coordinates: 
    4237 Matrix rotation and translation 
    4238 -0.58366910 0.81196380 0.00672086 127.49310255 
    4239 -0.81198684 -0.58367406 -0.00140266 399.66343186 
    4240 0.00278388 -0.00627594 0.99997643 14.98748908 
    4241 Axis -0.00300086 0.00242430 -0.99999256 
    4242 Axis point 166.19089097 167.17677913 0.00000000 
    4243 Rotation angle (degrees) 125.71003015 
    4244 Shift along axis -14.40106097 
    4245  
    4246 
    4247 > fitmap sel inMap #1
    4248 
    4249 Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
    4250 using 1474 atoms 
    4251 average map value = 0.5775, steps = 28 
    4252 shifted from previous position = 0.0146 
    4253 rotated from previous position = 0.0113 degrees 
    4254 atoms outside contour = 711, contour level = 0.55699 
    4255  
    4256 Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4257 coordinates: 
    4258 Matrix rotation and translation 
    4259 -0.58357657 0.81202924 0.00684873 127.46231815 
    4260 -0.81205280 -0.58358252 -0.00130226 399.65393894 
    4261 0.00293932 -0.00632150 0.99997570 14.96839966 
    4262 Axis -0.00309048 0.00240713 -0.99999233 
    4263 Axis point 166.18662926 167.17555386 0.00000000 
    4264 Rotation angle (degrees) 125.70356185 
    4265 Shift along axis -14.40018652 
    4266  
    4267 
    4268 > save /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/krog.pdb relModel #1
    4269 
    4270 > open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/krog.pdb
    4271 
    4272 Summary of feedback from opening /Users/nezakoritnik/Desktop/JGMV-
    4273 VLP/h/Coot6/krog.pdb 
    4274 --- 
    4275 warnings | Start residue of secondary structure not found: HELIX 1 1 LEUAa 104
    4276 GLNAa 109 1 6 
    4277 Start residue of secondary structure not found: HELIX 2 2 GLNAa 114 ILEAa 117
    4278 1 4 
    4279 Start residue of secondary structure not found: HELIX 3 3 HISAa 124 TYRAa 138
    4280 1 15 
    4281 Start residue of secondary structure not found: HELIX 4 4 ASPAa 142 ILEAa 157
    4282 1 16 
    4283 Start residue of secondary structure not found: HELIX 5 5 LYSAa 183 ILEAa 185
    4284 1 3 
    4285 107 messages similar to the above omitted 
    4286  
    4287 Chain information for krog.pdb 
    4288 --- 
    4289 Chain | Description 
    4290 10.1/Aa 10.2/Aa 10.3/Aa 10.4/Aa 10.5/Aa 10.6/Aa 10.7/Aa 10.8/Aa | No
    4291 description available 
    4292  
    4293 
    4294 > select subtract #9
    4295 
    4296 Nothing selected 
    4297 
    4298 > select add #10
    4299 
    4300 11792 atoms, 12080 bonds, 1424 residues, 9 models selected 
    4301 
    4302 > view matrix models #10,1,0,0,0.83623,0,1,0,-0.93842,0,0,1,40.156
    4303 
    4304 > ui mousemode right "rotate selected models"
    4305 
    4306 > view matrix models
    4307 > #10,0.89042,-0.45451,-0.024074,98.74,0.45495,0.89033,0.018142,-61.239,0.013188,-0.027107,0.99955,42.561
    4308 
    4309 > fitmap sel inMap #1
    4310 
    4311 Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
    4312 (#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
    4313 (#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms 
    4314 average map value = 0.5777, steps = 56 
    4315 shifted from previous position = 1.93 
    4316 rotated from previous position = 2.26 degrees 
    4317 atoms outside contour = 5708, contour level = 0.55699 
    4318  
    4319 Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4320 coordinates: 
    4321 Matrix rotation and translation 
    4322 0.99957937 0.02583960 0.01316807 -6.75159389 
    4323 -0.02547900 0.99931463 -0.02685328 9.74191849 
    4324 -0.01385292 0.02650648 0.99955265 -3.40509733 
    4325 Axis 0.67706946 0.34286305 -0.65116962 
    4326 Axis point 0.00000000 110.09960749 347.38205284 
    4327 Rotation angle (degrees) 2.25832113 
    4328 Shift along axis 0.98614183 
    4329  
    4330 Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4331 coordinates: 
    4332 Matrix rotation and translation 
    4333 0.99957937 0.02583960 0.01316807 -6.75159389 
    4334 -0.02547900 0.99931463 -0.02685328 9.74191849 
    4335 -0.01385292 0.02650648 0.99955265 -3.40509733 
    4336 Axis 0.67706946 0.34286305 -0.65116962 
    4337 Axis point 0.00000000 110.09960749 347.38205284 
    4338 Rotation angle (degrees) 2.25832113 
    4339 Shift along axis 0.98614183 
    4340  
    4341 Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4342 coordinates: 
    4343 Matrix rotation and translation 
    4344 0.99957937 0.02583960 0.01316807 -6.75159389 
    4345 -0.02547900 0.99931463 -0.02685328 9.74191849 
    4346 -0.01385292 0.02650648 0.99955265 -3.40509733 
    4347 Axis 0.67706946 0.34286305 -0.65116962 
    4348 Axis point 0.00000000 110.09960749 347.38205284 
    4349 Rotation angle (degrees) 2.25832113 
    4350 Shift along axis 0.98614183 
    4351  
    4352 Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4353 coordinates: 
    4354 Matrix rotation and translation 
    4355 0.99957937 0.02583960 0.01316807 -6.75159389 
    4356 -0.02547900 0.99931463 -0.02685328 9.74191849 
    4357 -0.01385292 0.02650648 0.99955265 -3.40509733 
    4358 Axis 0.67706946 0.34286305 -0.65116962 
    4359 Axis point 0.00000000 110.09960749 347.38205284 
    4360 Rotation angle (degrees) 2.25832113 
    4361 Shift along axis 0.98614183 
    4362  
    4363 Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4364 coordinates: 
    4365 Matrix rotation and translation 
    4366 0.99957937 0.02583960 0.01316807 -6.75159389 
    4367 -0.02547900 0.99931463 -0.02685328 9.74191849 
    4368 -0.01385292 0.02650648 0.99955265 -3.40509733 
    4369 Axis 0.67706946 0.34286305 -0.65116962 
    4370 Axis point 0.00000000 110.09960749 347.38205284 
    4371 Rotation angle (degrees) 2.25832113 
    4372 Shift along axis 0.98614183 
    4373  
    4374 Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4375 coordinates: 
    4376 Matrix rotation and translation 
    4377 0.99957937 0.02583960 0.01316807 -6.75159389 
    4378 -0.02547900 0.99931463 -0.02685328 9.74191849 
    4379 -0.01385292 0.02650648 0.99955265 -3.40509733 
    4380 Axis 0.67706946 0.34286305 -0.65116962 
    4381 Axis point 0.00000000 110.09960749 347.38205284 
    4382 Rotation angle (degrees) 2.25832113 
    4383 Shift along axis 0.98614183 
    4384  
    4385 Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4386 coordinates: 
    4387 Matrix rotation and translation 
    4388 0.99957937 0.02583960 0.01316807 -6.75159389 
    4389 -0.02547900 0.99931463 -0.02685328 9.74191849 
    4390 -0.01385292 0.02650648 0.99955265 -3.40509733 
    4391 Axis 0.67706946 0.34286305 -0.65116962 
    4392 Axis point 0.00000000 110.09960749 347.38205284 
    4393 Rotation angle (degrees) 2.25832113 
    4394 Shift along axis 0.98614183 
    4395  
    4396 Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4397 coordinates: 
    4398 Matrix rotation and translation 
    4399 0.99957937 0.02583960 0.01316807 -6.75159389 
    4400 -0.02547900 0.99931463 -0.02685328 9.74191849 
    4401 -0.01385292 0.02650648 0.99955265 -3.40509733 
    4402 Axis 0.67706946 0.34286305 -0.65116962 
    4403 Axis point 0.00000000 110.09960749 347.38205284 
    4404 Rotation angle (degrees) 2.25832113 
    4405 Shift along axis 0.98614183 
    4406  
    4407 
    4408 > fitmap sel inMap #1
    4409 
    4410 Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
    4411 (#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
    4412 (#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms 
    4413 average map value = 0.5777, steps = 40 
    4414 shifted from previous position = 0.01 
    4415 rotated from previous position = 0.00132 degrees 
    4416 atoms outside contour = 5702, contour level = 0.55699 
    4417  
    4418 Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4419 coordinates: 
    4420 Matrix rotation and translation 
    4421 0.99957892 0.02584770 0.01318648 -6.75702444 
    4422 -0.02548645 0.99931413 -0.02686460 9.75495254 
    4423 -0.01387182 0.02651721 0.99955210 -3.40320491 
    4424 Axis 0.67702406 0.34317157 -0.65105429 
    4425 Axis point 0.00000000 109.93918671 347.67991642 
    4426 Rotation angle (degrees) 2.25940634 
    4427 Shift along axis 0.98862540 
    4428  
    4429 Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4430 coordinates: 
    4431 Matrix rotation and translation 
    4432 0.99957892 0.02584770 0.01318648 -6.75702444 
    4433 -0.02548645 0.99931413 -0.02686460 9.75495254 
    4434 -0.01387182 0.02651721 0.99955210 -3.40320491 
    4435 Axis 0.67702406 0.34317157 -0.65105429 
    4436 Axis point 0.00000000 109.93918671 347.67991642 
    4437 Rotation angle (degrees) 2.25940634 
    4438 Shift along axis 0.98862540 
    4439  
    4440 Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4441 coordinates: 
    4442 Matrix rotation and translation 
    4443 0.99957892 0.02584770 0.01318648 -6.75702444 
    4444 -0.02548645 0.99931413 -0.02686460 9.75495254 
    4445 -0.01387182 0.02651721 0.99955210 -3.40320491 
    4446 Axis 0.67702406 0.34317157 -0.65105429 
    4447 Axis point 0.00000000 109.93918671 347.67991642 
    4448 Rotation angle (degrees) 2.25940634 
    4449 Shift along axis 0.98862540 
    4450  
    4451 Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4452 coordinates: 
    4453 Matrix rotation and translation 
    4454 0.99957892 0.02584770 0.01318648 -6.75702444 
    4455 -0.02548645 0.99931413 -0.02686460 9.75495254 
    4456 -0.01387182 0.02651721 0.99955210 -3.40320491 
    4457 Axis 0.67702406 0.34317157 -0.65105429 
    4458 Axis point 0.00000000 109.93918671 347.67991642 
    4459 Rotation angle (degrees) 2.25940634 
    4460 Shift along axis 0.98862540 
    4461  
    4462 Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4463 coordinates: 
    4464 Matrix rotation and translation 
    4465 0.99957892 0.02584770 0.01318648 -6.75702444 
    4466 -0.02548645 0.99931413 -0.02686460 9.75495254 
    4467 -0.01387182 0.02651721 0.99955210 -3.40320491 
    4468 Axis 0.67702406 0.34317157 -0.65105429 
    4469 Axis point 0.00000000 109.93918671 347.67991642 
    4470 Rotation angle (degrees) 2.25940634 
    4471 Shift along axis 0.98862540 
    4472  
    4473 Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4474 coordinates: 
    4475 Matrix rotation and translation 
    4476 0.99957892 0.02584770 0.01318648 -6.75702444 
    4477 -0.02548645 0.99931413 -0.02686460 9.75495254 
    4478 -0.01387182 0.02651721 0.99955210 -3.40320491 
    4479 Axis 0.67702406 0.34317157 -0.65105429 
    4480 Axis point 0.00000000 109.93918671 347.67991642 
    4481 Rotation angle (degrees) 2.25940634 
    4482 Shift along axis 0.98862540 
    4483  
    4484 Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4485 coordinates: 
    4486 Matrix rotation and translation 
    4487 0.99957892 0.02584770 0.01318648 -6.75702444 
    4488 -0.02548645 0.99931413 -0.02686460 9.75495254 
    4489 -0.01387182 0.02651721 0.99955210 -3.40320491 
    4490 Axis 0.67702406 0.34317157 -0.65105429 
    4491 Axis point 0.00000000 109.93918671 347.67991642 
    4492 Rotation angle (degrees) 2.25940634 
    4493 Shift along axis 0.98862540 
    4494  
    4495 Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4496 coordinates: 
    4497 Matrix rotation and translation 
    4498 0.99957892 0.02584770 0.01318648 -6.75702444 
    4499 -0.02548645 0.99931413 -0.02686460 9.75495254 
    4500 -0.01387182 0.02651721 0.99955210 -3.40320491 
    4501 Axis 0.67702406 0.34317157 -0.65105429 
    4502 Axis point 0.00000000 109.93918671 347.67991642 
    4503 Rotation angle (degrees) 2.25940634 
    4504 Shift along axis 0.98862540 
    4505  
    4506 
    4507 > fitmap sel inMap #1
    4508 
    4509 Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
    4510 (#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
    4511 (#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms 
    4512 average map value = 0.5777, steps = 44 
    4513 shifted from previous position = 0.0115 
    4514 rotated from previous position = 0.00167 degrees 
    4515 atoms outside contour = 5704, contour level = 0.55699 
    4516  
    4517 Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4518 coordinates: 
    4519 Matrix rotation and translation 
    4520 0.99957892 0.02585497 0.01317211 -6.75917410 
    4521 -0.02549444 0.99931458 -0.02684037 9.74137345 
    4522 -0.01385704 0.02649325 0.99955295 -3.40236848 
    4523 Axis 0.67669341 0.34294399 -0.65151781 
    4524 Axis point 0.00000000 110.10121572 347.55864648 
    4525 Rotation angle (degrees) 2.25846932 
    4526 Shift along axis 0.98356062 
    4527  
    4528 Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4529 coordinates: 
    4530 Matrix rotation and translation 
    4531 0.99957892 0.02585497 0.01317211 -6.75917410 
    4532 -0.02549444 0.99931458 -0.02684037 9.74137345 
    4533 -0.01385704 0.02649325 0.99955295 -3.40236848 
    4534 Axis 0.67669341 0.34294399 -0.65151781 
    4535 Axis point 0.00000000 110.10121572 347.55864648 
    4536 Rotation angle (degrees) 2.25846932 
    4537 Shift along axis 0.98356062 
    4538  
    4539 Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4540 coordinates: 
    4541 Matrix rotation and translation 
    4542 0.99957892 0.02585497 0.01317211 -6.75917410 
    4543 -0.02549444 0.99931458 -0.02684037 9.74137345 
    4544 -0.01385704 0.02649325 0.99955295 -3.40236848 
    4545 Axis 0.67669341 0.34294399 -0.65151781 
    4546 Axis point 0.00000000 110.10121572 347.55864648 
    4547 Rotation angle (degrees) 2.25846932 
    4548 Shift along axis 0.98356062 
    4549  
    4550 Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4551 coordinates: 
    4552 Matrix rotation and translation 
    4553 0.99957892 0.02585497 0.01317211 -6.75917410 
    4554 -0.02549444 0.99931458 -0.02684037 9.74137345 
    4555 -0.01385704 0.02649325 0.99955295 -3.40236848 
    4556 Axis 0.67669341 0.34294399 -0.65151781 
    4557 Axis point 0.00000000 110.10121572 347.55864648 
    4558 Rotation angle (degrees) 2.25846932 
    4559 Shift along axis 0.98356062 
    4560  
    4561 Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4562 coordinates: 
    4563 Matrix rotation and translation 
    4564 0.99957892 0.02585497 0.01317211 -6.75917410 
    4565 -0.02549444 0.99931458 -0.02684037 9.74137345 
    4566 -0.01385704 0.02649325 0.99955295 -3.40236848 
    4567 Axis 0.67669341 0.34294399 -0.65151781 
    4568 Axis point 0.00000000 110.10121572 347.55864648 
    4569 Rotation angle (degrees) 2.25846932 
    4570 Shift along axis 0.98356062 
    4571  
    4572 Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4573 coordinates: 
    4574 Matrix rotation and translation 
    4575 0.99957892 0.02585497 0.01317211 -6.75917410 
    4576 -0.02549444 0.99931458 -0.02684037 9.74137345 
    4577 -0.01385704 0.02649325 0.99955295 -3.40236848 
    4578 Axis 0.67669341 0.34294399 -0.65151781 
    4579 Axis point 0.00000000 110.10121572 347.55864648 
    4580 Rotation angle (degrees) 2.25846932 
    4581 Shift along axis 0.98356062 
    4582  
    4583 Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4584 coordinates: 
    4585 Matrix rotation and translation 
    4586 0.99957892 0.02585497 0.01317211 -6.75917410 
    4587 -0.02549444 0.99931458 -0.02684037 9.74137345 
    4588 -0.01385704 0.02649325 0.99955295 -3.40236848 
    4589 Axis 0.67669341 0.34294399 -0.65151781 
    4590 Axis point 0.00000000 110.10121572 347.55864648 
    4591 Rotation angle (degrees) 2.25846932 
    4592 Shift along axis 0.98356062 
    4593  
    4594 Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4595 coordinates: 
    4596 Matrix rotation and translation 
    4597 0.99957892 0.02585497 0.01317211 -6.75917410 
    4598 -0.02549444 0.99931458 -0.02684037 9.74137345 
    4599 -0.01385704 0.02649325 0.99955295 -3.40236848 
    4600 Axis 0.67669341 0.34294399 -0.65151781 
    4601 Axis point 0.00000000 110.10121572 347.55864648 
    4602 Rotation angle (degrees) 2.25846932 
    4603 Shift along axis 0.98356062 
    4604  
    4605 
    4606 > fitmap sel inMap #1
    4607 
    4608 Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
    4609 (#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
    4610 (#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms 
    4611 average map value = 0.5777, steps = 40 
    4612 shifted from previous position = 0.00235 
    4613 rotated from previous position = 0.008 degrees 
    4614 atoms outside contour = 5705, contour level = 0.55699 
    4615  
    4616 Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4617 coordinates: 
    4618 Matrix rotation and translation 
    4619 0.99958231 0.02572308 0.01317319 -6.73839152 
    4620 -0.02536194 0.99931677 -0.02688431 9.72434192 
    4621 -0.01385573 0.02653898 0.99955175 -3.40810448 
    4622 Axis 0.67878909 0.34342587 -0.64907938 
    4623 Axis point 0.00000000 110.35587349 346.41587355 
    4624 Rotation angle (degrees) 2.25528032 
    4625 Shift along axis 0.97777425 
    4626  
    4627 Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4628 coordinates: 
    4629 Matrix rotation and translation 
    4630 0.99958231 0.02572308 0.01317319 -6.73839152 
    4631 -0.02536194 0.99931677 -0.02688431 9.72434192 
    4632 -0.01385573 0.02653898 0.99955175 -3.40810448 
    4633 Axis 0.67878909 0.34342587 -0.64907938 
    4634 Axis point 0.00000000 110.35587349 346.41587355 
    4635 Rotation angle (degrees) 2.25528032 
    4636 Shift along axis 0.97777425 
    4637  
    4638 Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4639 coordinates: 
    4640 Matrix rotation and translation 
    4641 0.99958231 0.02572308 0.01317319 -6.73839152 
    4642 -0.02536194 0.99931677 -0.02688431 9.72434192 
    4643 -0.01385573 0.02653898 0.99955175 -3.40810448 
    4644 Axis 0.67878909 0.34342587 -0.64907938 
    4645 Axis point 0.00000000 110.35587349 346.41587355 
    4646 Rotation angle (degrees) 2.25528032 
    4647 Shift along axis 0.97777425 
    4648  
    4649 Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4650 coordinates: 
    4651 Matrix rotation and translation 
    4652 0.99958231 0.02572308 0.01317319 -6.73839152 
    4653 -0.02536194 0.99931677 -0.02688431 9.72434192 
    4654 -0.01385573 0.02653898 0.99955175 -3.40810448 
    4655 Axis 0.67878909 0.34342587 -0.64907938 
    4656 Axis point 0.00000000 110.35587349 346.41587355 
    4657 Rotation angle (degrees) 2.25528032 
    4658 Shift along axis 0.97777425 
    4659  
    4660 Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4661 coordinates: 
    4662 Matrix rotation and translation 
    4663 0.99958231 0.02572308 0.01317319 -6.73839152 
    4664 -0.02536194 0.99931677 -0.02688431 9.72434192 
    4665 -0.01385573 0.02653898 0.99955175 -3.40810448 
    4666 Axis 0.67878909 0.34342587 -0.64907938 
    4667 Axis point 0.00000000 110.35587349 346.41587355 
    4668 Rotation angle (degrees) 2.25528032 
    4669 Shift along axis 0.97777425 
    4670  
    4671 Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4672 coordinates: 
    4673 Matrix rotation and translation 
    4674 0.99958231 0.02572308 0.01317319 -6.73839152 
    4675 -0.02536194 0.99931677 -0.02688431 9.72434192 
    4676 -0.01385573 0.02653898 0.99955175 -3.40810448 
    4677 Axis 0.67878909 0.34342587 -0.64907938 
    4678 Axis point 0.00000000 110.35587349 346.41587355 
    4679 Rotation angle (degrees) 2.25528032 
    4680 Shift along axis 0.97777425 
    4681  
    4682 Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4683 coordinates: 
    4684 Matrix rotation and translation 
    4685 0.99958231 0.02572308 0.01317319 -6.73839152 
    4686 -0.02536194 0.99931677 -0.02688431 9.72434192 
    4687 -0.01385573 0.02653898 0.99955175 -3.40810448 
    4688 Axis 0.67878909 0.34342587 -0.64907938 
    4689 Axis point 0.00000000 110.35587349 346.41587355 
    4690 Rotation angle (degrees) 2.25528032 
    4691 Shift along axis 0.97777425 
    4692  
    4693 Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4694 coordinates: 
    4695 Matrix rotation and translation 
    4696 0.99958231 0.02572308 0.01317319 -6.73839152 
    4697 -0.02536194 0.99931677 -0.02688431 9.72434192 
    4698 -0.01385573 0.02653898 0.99955175 -3.40810448 
    4699 Axis 0.67878909 0.34342587 -0.64907938 
    4700 Axis point 0.00000000 110.35587349 346.41587355 
    4701 Rotation angle (degrees) 2.25528032 
    4702 Shift along axis 0.97777425 
    4703  
    4704 
    4705 > fitmap sel inMap #1
    4706 
    4707 Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
    4708 (#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
    4709 (#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms 
    4710 average map value = 0.5777, steps = 48 
    4711 shifted from previous position = 0.0205 
    4712 rotated from previous position = 0.00916 degrees 
    4713 atoms outside contour = 5700, contour level = 0.55699 
    4714  
    4715 Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4716 coordinates: 
    4717 Matrix rotation and translation 
    4718 0.99957800 0.02588165 0.01318983 -6.75843509 
    4719 -0.02552016 0.99931298 -0.02687527 9.76873048 
    4720 -0.01387635 0.02652733 0.99955177 -3.40513523 
    4721 Axis 0.67676560 0.34300684 -0.65140972 
    4722 Axis point 0.00000000 109.80953501 347.97773185 
    4723 Rotation angle (degrees) 2.26115062 
    4724 Shift along axis 0.99500322 
    4725  
    4726 Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4727 coordinates: 
    4728 Matrix rotation and translation 
    4729 0.99957800 0.02588165 0.01318983 -6.75843509 
    4730 -0.02552016 0.99931298 -0.02687527 9.76873048 
    4731 -0.01387635 0.02652733 0.99955177 -3.40513523 
    4732 Axis 0.67676560 0.34300684 -0.65140972 
    4733 Axis point 0.00000000 109.80953501 347.97773185 
    4734 Rotation angle (degrees) 2.26115062 
    4735 Shift along axis 0.99500322 
    4736  
    4737 Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4738 coordinates: 
    4739 Matrix rotation and translation 
    4740 0.99957800 0.02588165 0.01318983 -6.75843509 
    4741 -0.02552016 0.99931298 -0.02687527 9.76873048 
    4742 -0.01387635 0.02652733 0.99955177 -3.40513523 
    4743 Axis 0.67676560 0.34300684 -0.65140972 
    4744 Axis point 0.00000000 109.80953501 347.97773185 
    4745 Rotation angle (degrees) 2.26115062 
    4746 Shift along axis 0.99500322 
    4747  
    4748 Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4749 coordinates: 
    4750 Matrix rotation and translation 
    4751 0.99957800 0.02588165 0.01318983 -6.75843509 
    4752 -0.02552016 0.99931298 -0.02687527 9.76873048 
    4753 -0.01387635 0.02652733 0.99955177 -3.40513523 
    4754 Axis 0.67676560 0.34300684 -0.65140972 
    4755 Axis point 0.00000000 109.80953501 347.97773185 
    4756 Rotation angle (degrees) 2.26115062 
    4757 Shift along axis 0.99500322 
    4758  
    4759 Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4760 coordinates: 
    4761 Matrix rotation and translation 
    4762 0.99957800 0.02588165 0.01318983 -6.75843509 
    4763 -0.02552016 0.99931298 -0.02687527 9.76873048 
    4764 -0.01387635 0.02652733 0.99955177 -3.40513523 
    4765 Axis 0.67676560 0.34300684 -0.65140972 
    4766 Axis point 0.00000000 109.80953501 347.97773185 
    4767 Rotation angle (degrees) 2.26115062 
    4768 Shift along axis 0.99500322 
    4769  
    4770 Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4771 coordinates: 
    4772 Matrix rotation and translation 
    4773 0.99957800 0.02588165 0.01318983 -6.75843509 
    4774 -0.02552016 0.99931298 -0.02687527 9.76873048 
    4775 -0.01387635 0.02652733 0.99955177 -3.40513523 
    4776 Axis 0.67676560 0.34300684 -0.65140972 
    4777 Axis point 0.00000000 109.80953501 347.97773185 
    4778 Rotation angle (degrees) 2.26115062 
    4779 Shift along axis 0.99500322 
    4780  
    4781 Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4782 coordinates: 
    4783 Matrix rotation and translation 
    4784 0.99957800 0.02588165 0.01318983 -6.75843509 
    4785 -0.02552016 0.99931298 -0.02687527 9.76873048 
    4786 -0.01387635 0.02652733 0.99955177 -3.40513523 
    4787 Axis 0.67676560 0.34300684 -0.65140972 
    4788 Axis point 0.00000000 109.80953501 347.97773185 
    4789 Rotation angle (degrees) 2.26115062 
    4790 Shift along axis 0.99500322 
    4791  
    4792 Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4793 coordinates: 
    4794 Matrix rotation and translation 
    4795 0.99957800 0.02588165 0.01318983 -6.75843509 
    4796 -0.02552016 0.99931298 -0.02687527 9.76873048 
    4797 -0.01387635 0.02652733 0.99955177 -3.40513523 
    4798 Axis 0.67676560 0.34300684 -0.65140972 
    4799 Axis point 0.00000000 109.80953501 347.97773185 
    4800 Rotation angle (degrees) 2.26115062 
    4801 Shift along axis 0.99500322 
    4802  
    4803 
    4804 > fitmap sel inMap #1
    4805 
    4806 Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
    4807 (#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
    4808 (#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms 
    4809 average map value = 0.5777, steps = 40 
    4810 shifted from previous position = 0.00957 
    4811 rotated from previous position = 0.00315 degrees 
    4812 atoms outside contour = 5706, contour level = 0.55699 
    4813  
    4814 Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4815 coordinates: 
    4816 Matrix rotation and translation 
    4817 0.99957947 0.02583192 0.01317588 -6.75203037 
    4818 -0.02547108 0.99931476 -0.02685565 9.74842760 
    4819 -0.01386058 0.02650875 0.99955249 -3.40363305 
    4820 Axis 0.67714306 0.34306672 -0.65098579 
    4821 Axis point 0.00000000 110.00171074 347.56577202 
    4822 Rotation angle (degrees) 2.25827235 
    4823 Shift along axis 0.98798742 
    4824  
    4825 Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4826 coordinates: 
    4827 Matrix rotation and translation 
    4828 0.99957947 0.02583192 0.01317588 -6.75203037 
    4829 -0.02547108 0.99931476 -0.02685565 9.74842760 
    4830 -0.01386058 0.02650875 0.99955249 -3.40363305 
    4831 Axis 0.67714306 0.34306672 -0.65098579 
    4832 Axis point 0.00000000 110.00171074 347.56577202 
    4833 Rotation angle (degrees) 2.25827235 
    4834 Shift along axis 0.98798742 
    4835  
    4836 Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4837 coordinates: 
    4838 Matrix rotation and translation 
    4839 0.99957947 0.02583192 0.01317588 -6.75203037 
    4840 -0.02547108 0.99931476 -0.02685565 9.74842760 
    4841 -0.01386058 0.02650875 0.99955249 -3.40363305 
    4842 Axis 0.67714306 0.34306672 -0.65098579 
    4843 Axis point 0.00000000 110.00171074 347.56577202 
    4844 Rotation angle (degrees) 2.25827235 
    4845 Shift along axis 0.98798742 
    4846  
    4847 Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4848 coordinates: 
    4849 Matrix rotation and translation 
    4850 0.99957947 0.02583192 0.01317588 -6.75203037 
    4851 -0.02547108 0.99931476 -0.02685565 9.74842760 
    4852 -0.01386058 0.02650875 0.99955249 -3.40363305 
    4853 Axis 0.67714306 0.34306672 -0.65098579 
    4854 Axis point 0.00000000 110.00171074 347.56577202 
    4855 Rotation angle (degrees) 2.25827235 
    4856 Shift along axis 0.98798742 
    4857  
    4858 Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4859 coordinates: 
    4860 Matrix rotation and translation 
    4861 0.99957947 0.02583192 0.01317588 -6.75203037 
    4862 -0.02547108 0.99931476 -0.02685565 9.74842760 
    4863 -0.01386058 0.02650875 0.99955249 -3.40363305 
    4864 Axis 0.67714306 0.34306672 -0.65098579 
    4865 Axis point 0.00000000 110.00171074 347.56577202 
    4866 Rotation angle (degrees) 2.25827235 
    4867 Shift along axis 0.98798742 
    4868  
    4869 Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4870 coordinates: 
    4871 Matrix rotation and translation 
    4872 0.99957947 0.02583192 0.01317588 -6.75203037 
    4873 -0.02547108 0.99931476 -0.02685565 9.74842760 
    4874 -0.01386058 0.02650875 0.99955249 -3.40363305 
    4875 Axis 0.67714306 0.34306672 -0.65098579 
    4876 Axis point 0.00000000 110.00171074 347.56577202 
    4877 Rotation angle (degrees) 2.25827235 
    4878 Shift along axis 0.98798742 
    4879  
    4880 Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4881 coordinates: 
    4882 Matrix rotation and translation 
    4883 0.99957947 0.02583192 0.01317588 -6.75203037 
    4884 -0.02547108 0.99931476 -0.02685565 9.74842760 
    4885 -0.01386058 0.02650875 0.99955249 -3.40363305 
    4886 Axis 0.67714306 0.34306672 -0.65098579 
    4887 Axis point 0.00000000 110.00171074 347.56577202 
    4888 Rotation angle (degrees) 2.25827235 
    4889 Shift along axis 0.98798742 
    4890  
    4891 Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4892 coordinates: 
    4893 Matrix rotation and translation 
    4894 0.99957947 0.02583192 0.01317588 -6.75203037 
    4895 -0.02547108 0.99931476 -0.02685565 9.74842760 
    4896 -0.01386058 0.02650875 0.99955249 -3.40363305 
    4897 Axis 0.67714306 0.34306672 -0.65098579 
    4898 Axis point 0.00000000 110.00171074 347.56577202 
    4899 Rotation angle (degrees) 2.25827235 
    4900 Shift along axis 0.98798742 
    4901  
    4902 
    4903 > fitmap sel inMap #1
    4904 
    4905 Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
    4906 (#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
    4907 (#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms 
    4908 average map value = 0.5777, steps = 44 
    4909 shifted from previous position = 0.00873 
    4910 rotated from previous position = 0.00169 degrees 
    4911 atoms outside contour = 5704, contour level = 0.55699 
    4912  
    4913 Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4914 coordinates: 
    4915 Matrix rotation and translation 
    4916 0.99957882 0.02585844 0.01317303 -6.76036019 
    4917 -0.02549784 0.99931441 -0.02684354 9.74359087 
    4918 -0.01385814 0.02649635 0.99955285 -3.40246515 
    4919 Axis 0.67669211 0.34292866 -0.65152722 
    4920 Axis point 0.00000000 110.09577344 347.60124055 
    4921 Rotation angle (degrees) 2.25873973 
    4922 Shift along axis 0.98347284 
    4923  
    4924 Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4925 coordinates: 
    4926 Matrix rotation and translation 
    4927 0.99957882 0.02585844 0.01317303 -6.76036019 
    4928 -0.02549784 0.99931441 -0.02684354 9.74359087 
    4929 -0.01385814 0.02649635 0.99955285 -3.40246515 
    4930 Axis 0.67669211 0.34292866 -0.65152722 
    4931 Axis point 0.00000000 110.09577344 347.60124055 
    4932 Rotation angle (degrees) 2.25873973 
    4933 Shift along axis 0.98347284 
    4934  
    4935 Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4936 coordinates: 
    4937 Matrix rotation and translation 
    4938 0.99957882 0.02585844 0.01317303 -6.76036019 
    4939 -0.02549784 0.99931441 -0.02684354 9.74359087 
    4940 -0.01385814 0.02649635 0.99955285 -3.40246515 
    4941 Axis 0.67669211 0.34292866 -0.65152722 
    4942 Axis point 0.00000000 110.09577344 347.60124055 
    4943 Rotation angle (degrees) 2.25873973 
    4944 Shift along axis 0.98347284 
    4945  
    4946 Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4947 coordinates: 
    4948 Matrix rotation and translation 
    4949 0.99957882 0.02585844 0.01317303 -6.76036019 
    4950 -0.02549784 0.99931441 -0.02684354 9.74359087 
    4951 -0.01385814 0.02649635 0.99955285 -3.40246515 
    4952 Axis 0.67669211 0.34292866 -0.65152722 
    4953 Axis point 0.00000000 110.09577344 347.60124055 
    4954 Rotation angle (degrees) 2.25873973 
    4955 Shift along axis 0.98347284 
    4956  
    4957 Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4958 coordinates: 
    4959 Matrix rotation and translation 
    4960 0.99957882 0.02585844 0.01317303 -6.76036019 
    4961 -0.02549784 0.99931441 -0.02684354 9.74359087 
    4962 -0.01385814 0.02649635 0.99955285 -3.40246515 
    4963 Axis 0.67669211 0.34292866 -0.65152722 
    4964 Axis point 0.00000000 110.09577344 347.60124055 
    4965 Rotation angle (degrees) 2.25873973 
    4966 Shift along axis 0.98347284 
    4967  
    4968 Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4969 coordinates: 
    4970 Matrix rotation and translation 
    4971 0.99957882 0.02585844 0.01317303 -6.76036019 
    4972 -0.02549784 0.99931441 -0.02684354 9.74359087 
    4973 -0.01385814 0.02649635 0.99955285 -3.40246515 
    4974 Axis 0.67669211 0.34292866 -0.65152722 
    4975 Axis point 0.00000000 110.09577344 347.60124055 
    4976 Rotation angle (degrees) 2.25873973 
    4977 Shift along axis 0.98347284 
    4978  
    4979 Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4980 coordinates: 
    4981 Matrix rotation and translation 
    4982 0.99957882 0.02585844 0.01317303 -6.76036019 
    4983 -0.02549784 0.99931441 -0.02684354 9.74359087 
    4984 -0.01385814 0.02649635 0.99955285 -3.40246515 
    4985 Axis 0.67669211 0.34292866 -0.65152722 
    4986 Axis point 0.00000000 110.09577344 347.60124055 
    4987 Rotation angle (degrees) 2.25873973 
    4988 Shift along axis 0.98347284 
    4989  
    4990 Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    4991 coordinates: 
    4992 Matrix rotation and translation 
    4993 0.99957882 0.02585844 0.01317303 -6.76036019 
    4994 -0.02549784 0.99931441 -0.02684354 9.74359087 
    4995 -0.01385814 0.02649635 0.99955285 -3.40246515 
    4996 Axis 0.67669211 0.34292866 -0.65152722 
    4997 Axis point 0.00000000 110.09577344 347.60124055 
    4998 Rotation angle (degrees) 2.25873973 
    4999 Shift along axis 0.98347284 
    5000  
    5001 
    5002 > fitmap sel inMap #1
    5003 
    5004 Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
    5005 (#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
    5006 (#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms 
    5007 average map value = 0.5777, steps = 44 
    5008 shifted from previous position = 0.00789 
    5009 rotated from previous position = 0.0101 degrees 
    5010 atoms outside contour = 5706, contour level = 0.55699 
    5011  
    5012 Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
    5013 coordinates: 
    5014 Matrix rotation and translation 
    5015 0.99958348 0.02568616 0.01315666 -6.72969650 
    5016 -0.02532560 0.99931793 -0.02687529 9.71183367 
    5017 -0.01383801 0.02653090 0.99955221 -3.40908101 
    5018 Axis 0.67918376 0.34330003 -0.64873300 
    5019 Axis point 0.00000000 110.49679913 346.10846516 
    5020 Rotation angle (degrees) 2.25324724 
    5021 Shift along axis 0.97495555 
    5022  
    5023 Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
    5024 coordinates: 
    5025 Matrix rotation and translation 
    5026 0.99958348 0.02568616 0.01315666 -6.72969650 
    5027 -0.02532560 0.99931793 -0.02687529 9.71183367 
    5028 -0.01383801 0.02653090 0.99955221 -3.40908101 
    5029 Axis 0.67918376 0.34330003 -0.64873300 
    5030 Axis point 0.00000000 110.49679913 346.10846516 
    5031 Rotation angle (degrees) 2.25324724 
    5032 Shift along axis 0.97495555 
    5033  
    5034 Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
    5035 coordinates: 
    5036 Matrix rotation and translation 
    5037 0.99958348 0.02568616 0.01315666 -6.72969650 
    5038 -0.02532560 0.99931793 -0.02687529 9.71183367 
    5039 -0.01383801 0.02653090 0.99955221 -3.40908101 
    5040 Axis 0.67918376 0.34330003 -0.64873300 
    5041 Axis point 0.00000000 110.49679913 346.10846516 
    5042 Rotation angle (degrees) 2.25324724 
    5043 Shift along axis 0.97495555 
    5044  
    5045 Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
    5046 coordinates: 
    5047 Matrix rotation and translation 
    5048 0.99958348 0.02568616 0.01315666 -6.72969650 
    5049 -0.02532560 0.99931793 -0.02687529 9.71183367 
    5050 -0.01383801 0.02653090 0.99955221 -3.40908101 
    5051 Axis 0.67918376 0.34330003 -0.64873300 
    5052 Axis point 0.00000000 110.49679913 346.10846516 
    5053 Rotation angle (degrees) 2.25324724 
    5054 Shift along axis 0.97495555 
    5055  
    5056 Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
    5057 coordinates: 
    5058 Matrix rotation and translation 
    5059 0.99958348 0.02568616 0.01315666 -6.72969650 
    5060 -0.02532560 0.99931793 -0.02687529 9.71183367 
    5061 -0.01383801 0.02653090 0.99955221 -3.40908101 
    5062 Axis 0.67918376 0.34330003 -0.64873300 
    5063 Axis point 0.00000000 110.49679913 346.10846516 
    5064 Rotation angle (degrees) 2.25324724 
    5065 Shift along axis 0.97495555 
    5066  
    5067 Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
    5068 coordinates: 
    5069 Matrix rotation and translation 
    5070 0.99958348 0.02568616 0.01315666 -6.72969650 
    5071 -0.02532560 0.99931793 -0.02687529 9.71183367 
    5072 -0.01383801 0.02653090 0.99955221 -3.40908101 
    5073 Axis 0.67918376 0.34330003 -0.64873300 
    5074 Axis point 0.00000000 110.49679913 346.10846516 
    5075 Rotation angle (degrees) 2.25324724 
    5076 Shift along axis 0.97495555 
    5077  
    5078 Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
    5079 coordinates: 
    5080 Matrix rotation and translation 
    5081 0.99958348 0.02568616 0.01315666 -6.72969650 
    5082 -0.02532560 0.99931793 -0.02687529 9.71183367 
    5083 -0.01383801 0.02653090 0.99955221 -3.40908101 
    5084 Axis 0.67918376 0.34330003 -0.64873300 
    5085 Axis point 0.00000000 110.49679913 346.10846516 
    5086 Rotation angle (degrees) 2.25324724 
    5087 Shift along axis 0.97495555 
    5088  
    5089 Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
    5090 coordinates: 
    5091 Matrix rotation and translation 
    5092 0.99958348 0.02568616 0.01315666 -6.72969650 
    5093 -0.02532560 0.99931793 -0.02687529 9.71183367 
    5094 -0.01383801 0.02653090 0.99955221 -3.40908101 
    5095 Axis 0.67918376 0.34330003 -0.64873300 
    5096 Axis point 0.00000000 110.49679913 346.10846516 
    5097 Rotation angle (degrees) 2.25324724 
    5098 Shift along axis 0.97495555 
    5099  
     1572[deleted to fit within ticket limits 
    51001573
    51011574> fitmap sel inMap #1