![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 18 months ago
Last modified 18 months ago
#15510 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.2-x86_64-i386-64bit
ChimeraX Version: 1.7 (2023-12-19 08:36:03 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x000000031a77e000 (most recent call first):
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x0000000204dc52c0 (most recent call first):
Garbage-collecting
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molc.py", line 333 in pointer
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molc.py", line 251 in set_cvec_pointer
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 133 in __init__
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molarray.py", line 1063 in __init__
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 2225 in process_changes
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 2231 in changes
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/changes.py", line 36 in check_for_changes
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 69 in draw_new_frame
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 150 in _redraw_timer_callback
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/Applications/ChimeraX-1.7.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.pdb._pdbio, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.mmcif.mmcif_write (total: 53)
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{
"uptime" : 4100,
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookAir10,1",
"coalitionID" : 896,
"osVersion" : {
"train" : "macOS 13.2",
"build" : "22D49",
"releaseType" : "User"
},
"captureTime" : "2024-06-27 22:47:46.9093 +0200",
"incident" : "13173A63-4FA2-4C58-8373-114B4635624F",
"pid" : 735,
"translated" : true,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2024-06-27 20:51:11.5975 +0200",
"procStartAbsTime" : 4635762842,
"procExitAbsTime" : 98653227157,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.7.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.7.0","CFBundleVersion":"1.7.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"D82AA68D-AACC-5141-AE12-1309469013C3","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "311D3808-133C-AE77-3A0C-264C8C389551",
"throttleTimeout" : 2147483647,
"wakeTime" : 498,
"sleepWakeUUID" : "C0BCE3A9-10B0-485B-87AC-5430566404A5",
"sip" : "enabled",
"vmRegionInfo" : "0xa9 is not in any region. Bytes before following region: 140723039453015\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n mapped file 7ffca2c74000-7ffcad740000 [170.8M] r-x\/r-x SM=COW ...t_id=c296771b",
"exception" : {"codes":"0x0000000000000001, 0x00000000000000a9","rawCodes":[1,169],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00000000000000a9"},
"ktriageinfo" : "VM - pmap_enter retried due to resource shortage\nVM - pmap_enter retried due to resource shortage\nVM - pmap_enter retried due to resource shortage\nVM - pmap_enter retried due to resource shortage\nVM - pmap_enter retried due to resource shortage\n",
"vmregioninfo" : "0xa9 is not in any region. Bytes before following region: 140723039453015\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n mapped file 7ffca2c74000-7ffcad740000 [170.8M] r-x\/r-x SM=COW ...t_id=c296771b",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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"rolloutId" : "6297d96be2c9387df974efa4",
"factorPackIds" : {
},
"deploymentId" : 240000025
}
],
"experiments" : [
{
"treatmentId" : "c47ab4cc-c9c3-4b5d-a87c-e2433ce02597",
"experimentId" : "6639bc6ba73d460582162323",
"deploymentId" : 400000006
},
{
"treatmentId" : "45f4e2a5-551b-4bc2-a2dc-19c244dda8f8",
"experimentId" : "6643969b3099cf28e049862f",
"deploymentId" : 400000002
}
]
},
"reportNotes" : [
"dyld_process_snapshot_create_for_process failed with 5"
]
}
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/JGMVVLP-h_P78_J310.mrc
Opened JGMVVLP-h_P78_J310.mrc as #1, grid size 350,350,350, pixel 0.953, shown
at level 0.557, step 2, values float32
> open /Users/nezakoritnik/Desktop/JGMV-
> VLP/h/Rigidbodyrefine5/chains_filament5_real_space_refined.pdb
Chain information for chains_filament5_real_space_refined.pdb #2
---
Chain | Description
Aa Ab Ac Ad Ae Af Ag Ah Ai Aj Ak Al Am An Ao Ap Aq Ar As At Au Av Aw Ax | No
description available
> select /Aa:79-256
1474 atoms, 1510 bonds, 178 residues, 1 model selected
> save /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif selectedOnly
> true relModel #2
Not saving entity_poly_seq for non-authoritative sequences
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif
Summary of feedback from opening /Users/nezakoritnik/Desktop/JGMV-
VLP/h/Coot6/mono6.cif
---
warnings | Unknown polymer entity '1' near line 162
Missing or incomplete sequence information. Inferred polymer connectivity.
Chain information for mono6.cif #3
---
Chain | Description
Aa | No description available
> close #2
> close #3
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
Chain information for mono6.cif-coot-1.pdb #2
---
Chain | Description
Aa | No description available
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
Chain information for mono6.cif-coot-1.pdb #3
---
Chain | Description
Aa | No description available
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
Chain information for mono6.cif-coot-1.pdb #4
---
Chain | Description
Aa | No description available
> volume #1 step 1
> set bgColor white
> select add #3
1474 atoms, 1510 bonds, 178 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #3,1,0,0,27.627,0,1,0,1.3921,0,0,1,-5.4142
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.82289,-0.5639,-0.069817,137.19,0.56701,0.8229,0.036532,-60.801,0.036852,-0.069649,0.99689,-0.9935
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.82289,-0.5639,-0.069817,138.78,0.56701,0.8229,0.036532,-60.508,0.036852,-0.069649,0.99689,-1.223
> view matrix models
> #3,0.82289,-0.5639,-0.069817,136.2,0.56701,0.8229,0.036532,-66.119,0.036852,-0.069649,0.99689,-1.3143
> ui tool show "Fit in Map"
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 116
shifted from previous position = 5.55
rotated from previous position = 8.12 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74906285 -0.66246933 -0.00626329 153.49151039
0.66249322 0.74906220 0.00292549 -69.03560807
0.00275355 -0.00634076 0.99997611 -4.37962061
Axis -0.00699326 -0.00680503 0.99995239
Axis point 167.90741708 168.04167073 0.00000000
Rotation angle (degrees) 41.49179735
Shift along axis -4.98302943
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 28
shifted from previous position = 0.0264
rotated from previous position = 0.0315 degrees
atoms outside contour = 719, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74921846 -0.66229080 -0.00652673 153.46542894
0.66231508 0.74922122 0.00250736 -68.97582173
0.00322936 -0.00620131 0.99997556 -4.47236200
Axis -0.00657422 -0.00736492 0.99995127
Axis point 167.85236547 168.11113893 0.00000000
Rotation angle (degrees) 41.47821389
Shift along axis -4.97305835
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 40
shifted from previous position = 0.0137
rotated from previous position = 0.0263 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74908919 -0.66243861 -0.00636254 153.48968300
0.66246301 0.74908906 0.00288687 -69.03656591
0.00285374 -0.00637747 0.99997559 -4.39232275
Axis -0.00699213 -0.00695586 0.99995136
Axis point 167.91430398 168.05076075 0.00000000
Rotation angle (degrees) 41.48951905
Shift along axis -4.98512075
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 40
shifted from previous position = 0.00678
rotated from previous position = 0.0117 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74897713 -0.66256544 -0.00634780 153.52552291
0.66258943 0.74897768 0.00277284 -69.01899699
0.00291717 -0.00628278 0.99997601 -4.41218987
Axis -0.00683330 -0.00699128 0.99995221
Axis point 167.88625050 168.05617517 0.00000000
Rotation angle (degrees) 41.49916252
Shift along axis -4.97853417
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 44
shifted from previous position = 0.0126
rotated from previous position = 0.0141 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74912138 -0.66240135 -0.00645143 153.48795882
0.66242613 0.74912193 0.00282014 -69.02454812
0.00296484 -0.00638622 0.99997521 -4.40787898
Axis -0.00694876 -0.00710720 0.99995060
Axis point 167.90538827 168.06948895 0.00000000
Rotation angle (degrees) 41.48672186
Shift along axis -4.98364129
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 36
shifted from previous position = 0.0177
rotated from previous position = 0.012 degrees
atoms outside contour = 717, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74904675 -0.66248733 -0.00628539 153.49999406
0.66251121 0.74904648 0.00287498 -69.03070931
0.00280341 -0.00631763 0.99997611 -4.39061253
Axis -0.00693749 -0.00685916 0.99995241
Axis point 167.90231614 168.04819684 0.00000000
Rotation angle (degrees) 41.49317277
Shift along axis -4.98181652
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.015
rotated from previous position = 0.0104 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74911844 -0.66240490 -0.00642747 153.48806081
0.66242961 0.74911875 0.00284810 -69.02954957
0.00292834 -0.00639131 0.99997529 -4.40187903
Axis -0.00697367 -0.00706152 0.99995075
Axis point 167.91107436 168.06564491 0.00000000
Rotation angle (degrees) 41.48698355
Shift along axis -4.98458355
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 40
shifted from previous position = 0.0054
rotated from previous position = 0.0106 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74900624 -0.66253245 -0.00635591 153.51416311
0.66255670 0.74900635 0.00284731 -69.03148365
0.00287419 -0.00634380 0.99997575 -4.39872435
Axis -0.00693589 -0.00696531 0.99995169
Axis point 167.90275665 168.04771151 0.00000000
Rotation angle (degrees) 41.49667526
Shift along axis -4.98244290
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 44
shifted from previous position = 0.00652
rotated from previous position = 0.00797 degrees
atoms outside contour = 717, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74906541 -0.66246654 -0.00625327 153.48643221
0.66249023 0.74906502 0.00287893 -69.03151879
0.00277691 -0.00629924 0.99997630 -4.38921992
Axis -0.00692681 -0.00681513 0.99995279
Axis point 167.90019053 168.03861396 0.00000000
Rotation angle (degrees) 41.49155604
Shift along axis -4.98172563
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.0109
rotated from previous position = 0.00574 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74911319 -0.66241185 -0.00632223 153.47388800
0.66243598 0.74911300 0.00287807 -69.03429302
0.00282960 -0.00634407 0.99997587 -4.39356527
Axis -0.00696057 -0.00690750 0.99995192
Axis point 167.90810840 168.04237488 0.00000000
Rotation angle (degrees) 41.48743371
Shift along axis -4.98476512
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 44
shifted from previous position = 0.0122
rotated from previous position = 0.00878 degrees
atoms outside contour = 717, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74903568 -0.66250042 -0.00622510 153.49179196
0.66252397 0.74903514 0.00289100 -69.03407173
0.00274753 -0.00628974 0.99997644 -4.38591299
Axis -0.00692841 -0.00677135 0.99995307
Axis point 167.89975778 168.03072869 0.00000000
Rotation angle (degrees) 41.49412764
Shift along axis -4.98170788
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 40
shifted from previous position = 0.00392
rotated from previous position = 0.00609 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74896528 -0.66257995 -0.00623072 153.51689170
0.66260353 0.74896476 0.00288915 -69.03547348
0.00275230 -0.00629237 0.99997641 -4.38535598
Axis -0.00692816 -0.00677838 0.99995303
Axis point 167.89958348 168.03067910 0.00000000
Rotation angle (degrees) 41.50021548
Shift along axis -4.98079179
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 28
shifted from previous position = 0.0018
rotated from previous position = 0.0108 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74904545 -0.66249004 -0.00615225 153.48208481
0.66251346 0.74904395 0.00301258 -69.05068238
0.00261250 -0.00633251 0.99997654 -4.35975435
Axis -0.00705255 -0.00661458 0.99995325
Axis point 167.91757422 168.01346466 0.00000000
Rotation angle (degrees) 41.49331982
Shift along axis -4.98524887
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 40
shifted from previous position = 0.0168
rotated from previous position = 0.0148 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74909685 -0.66242998 -0.00635866 153.48472088
0.66245433 0.74909677 0.00287811 -69.03383261
0.00285670 -0.00636831 0.99997564 -4.39386649
Axis -0.00697870 -0.00695526 0.99995146
Axis point 167.90982368 168.04920579 0.00000000
Rotation angle (degrees) 41.48885199
Shift along axis -4.98462847
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 44
shifted from previous position = 0.0081
rotated from previous position = 0.0108 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74905019 -0.66248158 -0.00647742 153.51494338
0.66250632 0.74905127 0.00275009 -69.02264329
0.00303003 -0.00635129 0.99997524 -4.42344625
Axis -0.00686869 -0.00717514 0.99995067
Axis point 167.90218901 168.07365131 0.00000000
Rotation angle (degrees) 41.49285434
Shift along axis -4.98242678
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#3) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5783, steps = 28
shifted from previous position = 0.0228
rotated from previous position = 0.0143 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74903328 -0.66250277 -0.00626242 153.50441565
0.66252651 0.74903295 0.00287443 -69.03078631
0.00278644 -0.00630207 0.99997626 -4.38958078
Axis -0.00692518 -0.00682886 0.99995270
Axis point 167.90163789 168.04789841 0.00000000
Rotation angle (degrees) 41.49433373
Shift along axis -4.98101725
> select subtract #3
Nothing selected
> select add #4
1474 atoms, 1510 bonds, 178 residues, 1 model selected
> view matrix models #4,1,0,0,47.978,0,1,0,7.5468,0,0,1,-7.7587
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.38828,-0.92143,0.01464,249.51,0.91851,0.38567,-0.087175,-25.555,0.074679,0.047296,0.99609,-23.567
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.38828,-0.92143,0.01464,254.36,0.91851,0.38567,-0.087175,-19.359,0.074679,0.047296,0.99609,-24.103
> view matrix models
> #4,0.38828,-0.92143,0.01464,254.68,0.91851,0.38567,-0.087175,-24.067,0.074679,0.047296,0.99609,-24.583
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 140
shifted from previous position = 8.13
rotated from previous position = 16.9 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11687805 -0.99312369 -0.00669719 314.04948602
0.99314223 0.11689416 -0.00206616 -17.87938172
0.00283482 -0.00640977 0.99997544 -9.22902795
Axis -0.00218679 -0.00479889 0.99998609
Axis point 167.09472166 167.61554898 0.00000000
Rotation angle (degrees) 83.28828390
Shift along axis -9.82985886
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00426
rotated from previous position = 0.00464 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11689966 -0.99312119 -0.00669107 314.04624339
0.99313990 0.11691525 -0.00198824 -17.89018764
0.00275685 -0.00641274 0.99997564 -9.21651179
Axis -0.00222752 -0.00475657 0.99998621
Axis point 167.09898936 167.61214177 0.00000000
Rotation angle (degrees) 83.28704638
Shift along axis -9.83083402
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00192
rotated from previous position = 0.00868 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11703241 -0.99310552 -0.00669681 314.02748076
0.99312446 0.11704757 -0.00191635 -17.91588759
0.00268698 -0.00642649 0.99997574 -9.20516291
Axis -0.00227067 -0.00472436 0.99998626
Axis point 167.10505958 167.61240140 0.00000000
Rotation angle (degrees) 83.27939736
Shift along axis -9.83344826
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.0113
rotated from previous position = 0.0119 degrees
atoms outside contour = 712, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11691239 -0.99311959 -0.00670647 314.05951420
0.99313813 0.11692866 -0.00208615 -17.87688171
0.00285597 -0.00641655 0.99997534 -9.23232483
Axis -0.00218015 -0.00481423 0.99998603
Axis point 167.09879632 167.62855914 0.00000000
Rotation angle (degrees) 83.28630081
Shift along axis -9.83082956
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 28
shifted from previous position = 0.0128
rotated from previous position = 0.016 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11717610 -0.99308841 -0.00672104 314.00788545
0.99310728 0.11719186 -0.00200038 -17.92549338
0.00277421 -0.00644032 0.99997541 -9.21855794
Axis -0.00223537 -0.00478056 0.99998607
Axis point 167.10260162 167.62226700 0.00000000
Rotation angle (degrees) 83.27109949
Shift along axis -9.83465833
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0156
rotated from previous position = 0.0231 degrees
atoms outside contour = 712, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11678112 -0.99313540 -0.00665214 314.06742833
0.99315379 0.11679678 -0.00201563 -17.86564201
0.00277874 -0.00637121 0.99997584 -9.22444128
Axis -0.00219279 -0.00474792 0.99998632
Axis point 167.09466588 167.61532617 0.00000000
Rotation angle (degrees) 83.29387695
Shift along axis -9.82817475
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.018
rotated from previous position = 0.0143 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11694834 -0.99311558 -0.00667294 314.03166422
0.99313358 0.11696522 -0.00219712 -17.86860694
0.00296249 -0.00637017 0.99997532 -9.25273482
Axis -0.00210094 -0.00485100 0.99998603
Axis point 167.08112200 167.62375074 0.00000000
Rotation angle (degrees) 83.28420983
Shift along axis -9.82568727
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5779, steps = 28
shifted from previous position = 0.0289
rotated from previous position = 0.0241 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11667627 -0.99314782 -0.00663776 314.08368766
0.99316648 0.11669104 -0.00188183 -17.86380429
0.00264351 -0.00637284 0.99997620 -9.20018101
Axis -0.00226094 -0.00467254 0.99998653
Axis point 167.09997985 167.60656250 0.00000000
Rotation angle (degrees) 83.29994153
Shift along axis -9.82671282
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0228
rotated from previous position = 0.0174 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11692769 -0.99311779 -0.00670617 314.04311563
0.99313648 0.11694360 -0.00203158 -17.88729065
0.00280184 -0.00642259 0.99997545 -9.22198221
Axis -0.00221067 -0.00478684 0.99998610
Axis point 167.09632281 167.61682145 0.00000000
Rotation angle (degrees) 83.28542545
Shift along axis -9.83047646
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.0126
rotated from previous position = 0.0144 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11675707 -0.99313865 -0.00658843 314.05891372
0.99315698 0.11677176 -0.00189086 -17.88037130
0.00264723 -0.00632258 0.99997651 -9.21055691
Axis -0.00223111 -0.00464963 0.99998670
Axis point 167.09773401 167.59904897 0.00000000
Rotation angle (degrees) 83.29527335
Shift along axis -9.82799875
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.0168
rotated from previous position = 0.013 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11689174 -0.99312217 -0.00668447 314.04258861
0.99314068 0.11690768 -0.00204494 -17.88428383
0.00281234 -0.00639958 0.99997557 -9.22639822
Axis -0.00219235 -0.00478118 0.99998617
Axis point 167.09404610 167.61171192 0.00000000
Rotation angle (degrees) 83.28749528
Shift along axis -9.82925343
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.0203
rotated from previous position = 0.015 degrees
atoms outside contour = 712, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11696081 -0.99311438 -0.00663314 314.03519089
0.99313323 0.11697504 -0.00179777 -17.91497940
0.00256130 -0.00637732 0.99997638 -9.19088759
Axis -0.00230560 -0.00462899 0.99998663
Axis point 167.10698975 167.60456373 0.00000000
Rotation angle (degrees) 83.28353608
Shift along axis -9.83187648
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0181
rotated from previous position = 0.0189 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11693504 -0.99311690 -0.00671004 314.04336320
0.99313537 0.11695152 -0.00211714 -17.87712276
0.00288731 -0.00641641 0.99997525 -9.23599221
Axis -0.00216448 -0.00483182 0.99998598
Axis point 167.09125018 167.62342987 0.00000000
Rotation angle (degrees) 83.28499064
Shift along axis -9.82922561
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00432
rotated from previous position = 0.00588 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11692066 -0.99311860 -0.00670853 314.04694625
0.99313735 0.11693648 -0.00201572 -17.88769294
0.00278632 -0.00642682 0.99997547 -9.21924822
Axis -0.00222078 -0.00478021 0.99998611
Axis point 167.09831328 167.61748768 0.00000000
Rotation angle (degrees) 83.28583326
Shift along axis -9.83104178
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 28
shifted from previous position = 0.0136
rotated from previous position = 0.021 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11658644 -0.99315846 -0.00662405 314.09390550
0.99317698 0.11660131 -0.00190265 -17.85683945
0.00266200 -0.00635703 0.99997625 -9.20768187
Axis -0.00224249 -0.00467491 0.99998656
Axis point 167.10035127 167.59979041 0.00000000
Rotation angle (degrees) 83.30511924
Shift along axis -9.82843005
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.002
rotated from previous position = 0.0228 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11696575 -0.99311369 -0.00664990 314.03725424
0.99313266 0.11697996 -0.00178902 -17.91515515
0.00255460 -0.00639498 0.99997629 -9.18745865
Axis -0.00231890 -0.00463406 0.99998657
Axis point 167.10814338 167.60642958 0.00000000
Rotation angle (degrees) 83.28325459
Shift along axis -9.83253636
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00166
rotated from previous position = 0.00669 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11686040 -0.99312635 -0.00661085 314.04916747
0.99314500 0.11687470 -0.00181852 -17.89996598
0.00257866 -0.00635301 0.99997649 -9.19631700
Axis -0.00228289 -0.00462645 0.99998669
Axis point 167.10458838 167.60208457 0.00000000
Rotation angle (degrees) 83.28932392
Shift along axis -9.83031999
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0186
rotated from previous position = 0.015 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11690766 -0.99312021 -0.00669715 314.04376396
0.99313876 0.11692374 -0.00206164 -17.88102374
0.00283051 -0.00641017 0.99997545 -9.22763636
Axis -0.00218928 -0.00479672 0.99998610
Axis point 167.09306291 167.61680968 0.00000000
Rotation angle (degrees) 83.28657603
Shift along axis -9.82926643
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.0041
rotated from previous position = 0.0027 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11690513 -0.99312039 -0.00671389 314.05057563
0.99313917 0.11692098 -0.00201760 -17.88611925
0.00278871 -0.00643196 0.99997543 -9.21906424
Axis -0.00222242 -0.00478410 0.99998609
Axis point 167.09909938 167.61751187 0.00000000
Rotation angle (degrees) 83.28672927
Shift along axis -9.83131901
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 28
shifted from previous position = 0.0182
rotated from previous position = 0.0216 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11688753 -0.99312287 -0.00665294 314.05463930
0.99314223 0.11690084 -0.00164666 -17.92887802
0.00241307 -0.00641484 0.99997651 -9.16452697
Axis -0.00240054 -0.00456429 0.99998670
Axis point 167.12302346 167.59517334 0.00000000
Rotation angle (degrees) 83.28778674
Shift along axis -9.83647359
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00433
rotated from previous position = 0.0118 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11692342 -0.99311879 -0.00663130 314.04147262
0.99313750 0.11693797 -0.00184839 -17.90252141
0.00261112 -0.00636967 0.99997630 -9.19917357
Axis -0.00227625 -0.00465313 0.99998658
Axis point 167.10299950 167.60769410 0.00000000
Rotation angle (degrees) 83.28568633
Shift along axis -9.83058523
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0014
rotated from previous position = 0.000982 degrees
atoms outside contour = 712, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11693335 -0.99311762 -0.00663147 314.03932378
0.99313630 0.11694798 -0.00186225 -17.90266906
0.00262497 -0.00636820 0.99997628 -9.20161669
Axis -0.00226854 -0.00466019 0.99998657
Axis point 167.10218163 167.60820215 0.00000000
Rotation angle (degrees) 83.28511179
Shift along axis -9.83047342
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.016
rotated from previous position = 0.0113 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11709645 -0.99309794 -0.00670087 314.01557718
0.99311683 0.11711181 -0.00194529 -17.92085872
0.00271662 -0.00642696 0.99997566 -9.21011175
Axis -0.00225636 -0.00474136 0.99998621
Axis point 167.10271530 167.61469596 0.00000000
Rotation angle (degrees) 83.27569920
Shift along axis -9.83354685
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.0127
rotated from previous position = 0.0169 degrees
atoms outside contour = 712, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11681952 -0.99313078 -0.00666683 314.06575454
0.99314921 0.11683537 -0.00203767 -17.86897318
0.00280260 -0.00638311 0.99997570 -9.22719896
Axis -0.00218770 -0.00476735 0.99998624
Axis point 167.09622502 167.61954242 0.00000000
Rotation angle (degrees) 83.29166053
Shift along axis -9.82896518
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.00954
rotated from previous position = 0.00533 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11688888 -0.99312236 -0.00670555 314.05223395
0.99314116 0.11690453 -0.00198958 -17.88871045
0.00275981 -0.00642700 0.99997554 -9.21544528
Axis -0.00223402 -0.00476534 0.99998615
Axis point 167.10106618 167.61425111 0.00000000
Rotation angle (degrees) 83.28766924
Shift along axis -9.83167143
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00264
rotated from previous position = 0.00523 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11696318 -0.99311353 -0.00671844 314.03983635
0.99313227 0.11697918 -0.00203962 -17.88995567
0.00281149 -0.00643374 0.99997535 -9.22215814
Axis -0.00221224 -0.00479789 0.99998604
Axis point 167.09660013 167.61994744 0.00000000
Rotation angle (degrees) 83.28337818
Shift along axis -9.83092824
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.0171
rotated from previous position = 0.0173 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11676424 -0.99313776 -0.00659501 314.06138741
0.99315623 0.11677871 -0.00185131 -17.88367108
0.00260877 -0.00633371 0.99997654 -9.20269453
Axis -0.00225663 -0.00463358 0.99998672
Axis point 167.10070201 167.60000394 0.00000000
Rotation angle (degrees) 83.29486516
Shift along axis -9.82842845
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00499
rotated from previous position = 0.008 degrees
atoms outside contour = 712, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11688416 -0.99312351 -0.00661724 314.04312551
0.99314195 0.11689910 -0.00191686 -17.89075184
0.00267723 -0.00634780 0.99997627 -9.21194774
Axis -0.00223076 -0.00467930 0.99998656
Axis point 167.09714283 167.60761865 0.00000000
Rotation angle (degrees) 83.28794106
Shift along axis -9.82866292
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 36
shifted from previous position = 0.012
rotated from previous position = 0.00886 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11689520 -0.99312174 -0.00668802 314.04622540
0.99314025 0.11691121 -0.00205372 -17.88028265
0.00282150 -0.00640207 0.99997553 -9.22755810
Axis -0.00218918 -0.00478758 0.99998614
Axis point 167.09369935 167.61636987 0.00000000
Rotation angle (degrees) 83.28729449
Shift along axis -9.82933069
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 28
shifted from previous position = 0.0126
rotated from previous position = 0.0134 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11671912 -0.99314316 -0.00658184 314.06382597
0.99316129 0.11673415 -0.00194716 -17.86672156
0.00270213 -0.00630955 0.99997644 -9.22062611
Axis -0.00219621 -0.00467393 0.99998667
Axis point 167.09241080 167.60193259 0.00000000
Rotation angle (degrees) 83.29745476
Shift along axis -9.82674532
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 36
shifted from previous position = 0.0125
rotated from previous position = 0.0132 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11689955 -0.99312120 -0.00669159 314.04895685
0.99313978 0.11691546 -0.00203739 -17.88426247
0.00280573 -0.00640752 0.99997554 -9.22518324
Axis -0.00220015 -0.00478144 0.99998615
Axis point 167.09726813 167.61665708 0.00000000
Rotation angle (degrees) 83.28704629
Shift along axis -9.83049630
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0135
rotated from previous position = 0.0101 degrees
atoms outside contour = 712, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11685257 -0.99312727 -0.00661087 314.05007167
0.99314574 0.11686731 -0.00188770 -17.89116767
0.00264732 -0.00634498 0.99997637 -9.20812744
Axis -0.00224401 -0.00466103 0.99998662
Axis point 167.10036967 167.60566131 0.00000000
Rotation angle (degrees) 83.28976647
Shift along axis -9.82934436
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.0154
rotated from previous position = 0.0125 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11701932 -0.99310690 -0.00672077 314.03166047
0.99312584 0.11703490 -0.00197245 -17.90844226
0.00274542 -0.00644375 0.99997547 -9.21200058
Axis -0.00225111 -0.00476584 0.99998611
Axis point 167.10314228 167.61607236 0.00000000
Rotation angle (degrees) 83.28014821
Shift along axis -9.83344487
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0171
rotated from previous position = 0.0127 degrees
atoms outside contour = 712, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11681953 -0.99313101 -0.00663224 314.05762986
0.99314946 0.11683472 -0.00195007 -17.87504706
0.00271155 -0.00635900 0.99997611 -9.21414980
Axis -0.00221966 -0.00470410 0.99998647
Axis point 167.09508674 167.61202502 0.00000000
Rotation angle (degrees) 83.29166700
Shift along axis -9.82704001
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00132
rotated from previous position = 0.00664 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11685817 -0.99312658 -0.00661551 314.04927009
0.99314520 0.11687263 -0.00184185 -17.89551965
0.00260237 -0.00635493 0.99997642 -9.19932055
Axis -0.00227210 -0.00464073 0.99998665
Axis point 167.10224114 167.60396917 0.00000000
Rotation angle (degrees) 83.28945005
Shift along axis -9.82970199
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 36
shifted from previous position = 0.0021
rotated from previous position = 0.0085 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11673524 -0.99314089 -0.00663724 314.07239540
0.99315945 0.11675026 -0.00192154 -17.87126831
0.00268326 -0.00636753 0.99997613 -9.20942522
Axis -0.00223830 -0.00469233 0.99998649
Axis point 167.09934113 167.60707204 0.00000000
Rotation angle (degrees) 83.29653413
Shift along axis -9.82842962
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#4) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.015
rotated from previous position = 0.0165 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.11700711 -0.99310835 -0.00671918 314.03384725
0.99312733 0.11702257 -0.00195427 -17.90881202
0.00272710 -0.00644434 0.99997552 -9.20895608
Axis -0.00226056 -0.00475581 0.99998614
Axis point 167.10422269 167.61492074 0.00000000
Rotation angle (degrees) 83.28085483
Shift along axis -9.83354982
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
Chain information for mono6.cif-coot-1.pdb #5
---
Chain | Description
Aa | No description available
> select subtract #4
Nothing selected
> select add #5
1474 atoms, 1510 bonds, 178 residues, 1 model selected
> view matrix models #5,1,0,0,47.221,0,1,0,30.038,0,0,1,-10.785
> view matrix models #5,1,0,0,53.69,0,1,0,51.656,0,0,1,-15.532
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.34098,-0.93057,-0.13331,383.3,0.93923,-0.33123,-0.090216,108.86,0.039795,-0.15597,0.98696,1.3552
> view matrix models
> #5,-0.45193,-0.88229,-0.13163,392.18,0.89186,-0.44384,-0.08712,129.46,0.018442,-0.15677,0.98746,4.3371
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.45193,-0.88229,-0.13163,405.08,0.89186,-0.44384,-0.08712,123.27,0.018442,-0.15677,0.98746,4.7097
> view matrix models
> #5,-0.45193,-0.88229,-0.13163,408.57,0.89186,-0.44384,-0.08712,114.74,0.018442,-0.15677,0.98746,2.2155
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 120
shifted from previous position = 3.82
rotated from previous position = 12 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57489207 -0.81822185 -0.00348206 399.61897520
0.81822482 -0.57486973 -0.00573949 127.27029592
0.00269445 -0.00614869 0.99997747 -14.08541731
Axis -0.00025005 -0.00377431 0.99999285
Axis point 166.76047211 167.41860950 0.00000000
Rotation angle (degrees) 125.09208077
Shift along axis -14.66560016
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.0141
rotated from previous position = 0.0129 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57495261 -0.81817975 -0.00337601 399.60970179
0.81818155 -0.57492942 -0.00592507 127.30065602
0.00290681 -0.00616883 0.99997675 -14.11616846
Axis -0.00014896 -0.00383948 0.99999262
Axis point 166.75188364 167.42189444 0.00000000
Rotation angle (degrees) 125.09631561
Shift along axis -14.66435781
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.0122
rotated from previous position = 0.009 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57503739 -0.81812000 -0.00341706 399.61793080
0.81812237 -0.57501477 -0.00581478 127.31409135
0.00279232 -0.00613929 0.99997726 -14.10061531
Axis -0.00019833 -0.00379488 0.99999278
Axis point 166.75618342 167.41773811 0.00000000
Rotation angle (degrees) 125.10225507
Shift along axis -14.66291014
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.00191
rotated from previous position = 0.00364 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57499000 -0.81815338 -0.00339978 399.61316034
0.81815559 -0.57496731 -0.00583391 127.30450179
0.00281827 -0.00613599 0.99997720 -14.10539607
Axis -0.00018461 -0.00380002 0.99999276
Axis point 166.75406346 167.41906314 0.00000000
Rotation angle (degrees) 125.09893543
Shift along axis -14.66282592
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 44
shifted from previous position = 0.0153
rotated from previous position = 0.0174 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57475571 -0.81831762 -0.00348675 399.61349484
0.81832050 -0.57473311 -0.00578027 127.22681023
0.00272615 -0.00617552 0.99997722 -14.08981879
Axis -0.00024150 -0.00379610 0.99999277
Axis point 166.76244334 167.41646547 0.00000000
Rotation angle (degrees) 125.08253251
Shift along axis -14.66918932
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.00737
rotated from previous position = 0.0045 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57478449 -0.81829749 -0.00346685 399.61882281
0.81830007 -0.57476153 -0.00584786 127.24636322
0.00279267 -0.00619818 0.99997689 -14.09818156
Axis -0.00021406 -0.00382469 0.99999266
Axis point 166.76174533 167.42306484 0.00000000
Rotation angle (degrees) 125.08454618
Shift along axis -14.67029727
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.00561
rotated from previous position = 0.00765 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57483959 -0.81825896 -0.00342300 399.61162645
0.81826097 -0.57481609 -0.00595487 127.28016154
0.00290503 -0.00622401 0.99997641 -14.10906109
Axis -0.00016445 -0.00386673 0.99999251
Axis point 166.75258497 167.42944242 0.00000000
Rotation angle (degrees) 125.08840251
Shift along axis -14.66683181
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.00963
rotated from previous position = 0.0152 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57493989 -0.81818836 -0.00345568 399.61970531
0.81819121 -0.57491773 -0.00572237 127.27524902
0.00269525 -0.00611743 0.99997766 -14.09023353
Axis -0.00024142 -0.00375884 0.99999291
Axis point 166.76191357 167.41398799 0.00000000
Rotation angle (degrees) 125.09542915
Shift along axis -14.66501621
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 44
shifted from previous position = 0.0166
rotated from previous position = 0.0127 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57478903 -0.81829431 -0.00346457 399.61578016
0.81829688 -0.57476610 -0.00584397 127.24393344
0.00279077 -0.00619409 0.99997692 -14.09791639
Axis -0.00021393 -0.00382215 0.99999267
Axis point 166.76107043 167.42037282 0.00000000
Rotation angle (degrees) 125.08486433
Shift along axis -14.66964885
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 44
shifted from previous position = 0.0198
rotated from previous position = 0.00914 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57486404 -0.81824145 -0.00350458 399.62176780
0.81824461 -0.57484176 -0.00572017 127.26033493
0.00266590 -0.00615592 0.99997750 -14.08056009
Axis -0.00026627 -0.00377054 0.99999286
Axis point 166.76294658 167.41867174 0.00000000
Rotation angle (degrees) 125.09011881
Shift along axis -14.66670779
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.00202
rotated from previous position = 0.00261 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57488557 -0.81822641 -0.00348223 399.62061921
0.81822936 -0.57486317 -0.00575014 127.27169673
0.00270311 -0.00615494 0.99997741 -14.08641002
Axis -0.00024736 -0.00377969 0.99999283
Axis point 166.76064871 167.42071723 0.00000000
Rotation angle (degrees) 125.09162566
Shift along axis -14.66620648
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.0221
rotated from previous position = 0.0104 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57494193 -0.81818712 -0.00340830 399.61668562
0.81818919 -0.57491880 -0.00590156 127.28745615
0.00286908 -0.00618168 0.99997678 -14.10969856
Axis -0.00017119 -0.00383612 0.99999263
Axis point 166.75811104 167.41871209 0.00000000
Rotation angle (degrees) 125.09556902
Shift along axis -14.66629285
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.021
rotated from previous position = 0.0102 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57492880 -0.81819610 -0.00346614 399.62019252
0.81819899 -0.57490655 -0.00573368 127.27787198
0.00269857 -0.00613245 0.99997756 -14.08835605
Axis -0.00024369 -0.00376722 0.99999287
Axis point 166.76094380 167.41708421 0.00000000
Rotation angle (degrees) 125.09465281
Shift along axis -14.66512126
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.0151
rotated from previous position = 0.0127 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57481342 -0.81827725 -0.00344692 399.61380832
0.81827955 -0.57479016 -0.00590405 127.26383497
0.00284990 -0.00621428 0.99997663 -14.10252330
Axis -0.00018956 -0.00384757 0.99999258
Axis point 166.75637991 167.42594757 0.00000000
Rotation angle (degrees) 125.08657051
Shift along axis -14.66782481
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 44
shifted from previous position = 0.0183
rotated from previous position = 0.0209 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57506424 -0.81810096 -0.00345695 399.62046704
0.81810387 -0.57504217 -0.00570746 127.30576874
0.00268139 -0.00611030 0.99997774 -14.08724745
Axis -0.00024620 -0.00375154 0.99999293
Axis point 166.76044468 167.41019981 0.00000000
Rotation angle (degrees) 125.10413759
Shift along axis -14.66312866
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.0226
rotated from previous position = 0.0139 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57493434 -0.81819243 -0.00341466 399.61628589
0.81819459 -0.57491129 -0.00588506 127.28413506
0.00285199 -0.00617738 0.99997685 -14.10761823
Axis -0.00017863 -0.00382953 0.99999265
Axis point 166.75832231 167.41814488 0.00000000
Rotation angle (degrees) 125.09503721
Shift along axis -14.66633834
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.02
rotated from previous position = 0.00915 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57504574 -0.81811410 -0.00342401 399.61887511
0.81811655 -0.57502318 -0.00580260 127.31562868
0.00277830 -0.00613800 0.99997730 -14.09814597
Axis -0.00020498 -0.00379058 0.99999279
Axis point 166.75660582 167.41746514 0.00000000
Rotation angle (degrees) 125.10283994
Shift along axis -14.66255912
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.00734
rotated from previous position = 0.00375 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57501398 -0.81813662 -0.00337622 399.61170246
0.81813871 -0.57499141 -0.00582457 127.30570195
0.00282399 -0.00611143 0.99997734 -14.11162766
Axis -0.00017531 -0.00378920 0.99999281
Axis point 166.75423291 167.41566264 0.00000000
Rotation angle (degrees) 125.10061434
Shift along axis -14.66396908
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 44
shifted from previous position = 0.0124
rotated from previous position = 0.00939 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57494695 -0.81818397 -0.00331686 399.60211134
0.81818532 -0.57492377 -0.00595304 127.29886734
0.00296374 -0.00613649 0.99997678 -14.12952541
Axis -0.00011211 -0.00383810 0.99999263
Axis point 166.74852595 167.42003123 0.00000000
Rotation angle (degrees) 125.09591848
Shift along axis -14.66280519
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.0182
rotated from previous position = 0.018 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57486493 -0.81824075 -0.00352007 399.62536905
0.81824397 -0.57484252 -0.00573471 127.26241238
0.00266889 -0.00617696 0.99997736 -14.07859152
Axis -0.00027024 -0.00378183 0.99999281
Axis point 166.76426651 167.42042115 0.00000000
Rotation angle (degrees) 125.09018131
Shift along axis -14.66777157
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 28
shifted from previous position = 0.0139
rotated from previous position = 0.0219 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57499490 -0.81815059 -0.00323765 399.59081109
0.81815151 -0.57497205 -0.00593689 127.31151568
0.00299571 -0.00606257 0.99997714 -14.14355657
Axis -0.00007681 -0.00380939 0.99999274
Axis point 166.74209703 167.41628625 0.00000000
Rotation angle (degrees) 125.09927553
Shift along axis -14.65912505
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 28
shifted from previous position = 0.0214
rotated from previous position = 0.0245 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57486023 -0.81824398 -0.00353754 399.62606066
0.81824745 -0.57483811 -0.00568017 127.25980362
0.00261425 -0.00615989 0.99997761 -14.07206316
Axis -0.00029314 -0.00375911 0.99999289
Axis point 166.76481485 167.42009809 0.00000000
Rotation angle (degrees) 125.08985399
Shift along axis -14.66749163
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.0215
rotated from previous position = 0.0164 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57484795 -0.81825311 -0.00341955 399.61143972
0.81825513 -0.57482454 -0.00594100 127.27786797
0.00289560 -0.00621324 0.99997651 -14.10922221
Axis -0.00016635 -0.00385889 0.99999254
Axis point 166.75345748 167.42699646 0.00000000
Rotation angle (degrees) 125.08898748
Shift along axis -14.66674452
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 40
shifted from previous position = 0.0112
rotated from previous position = 0.00992 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57487445 -0.81823436 -0.00345014 399.61475013
0.81823704 -0.57485199 -0.00577378 127.26789686
0.00274098 -0.00614223 0.99997738 -14.09387375
Axis -0.00022515 -0.00378319 0.99999282
Axis point 166.75831936 167.41906589 0.00000000
Rotation angle (degrees) 125.09084597
Shift along axis -14.66522359
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#5) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5776, steps = 28
shifted from previous position = 0.0109
rotated from previous position = 0.0169 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.57496638 -0.81817044 -0.00328784 399.59705110
0.81817149 -0.57494303 -0.00599344 127.31403343
0.00301334 -0.00613604 0.99997664 -14.13679526
Axis -0.00008715 -0.00385074 0.99999258
Axis point 166.74323671 167.42328598 0.00000000
Rotation angle (degrees) 125.09727814
Shift along axis -14.66176694
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
Chain information for mono6.cif-coot-1.pdb #6
---
Chain | Description
Aa | No description available
> select subtract #5
Nothing selected
> select add #6
1474 atoms, 1510 bonds, 178 residues, 1 model selected
> view matrix models #6,1,0,0,48.817,0,1,0,54.737,0,0,1,-12.842
> view matrix models #6,1,0,0,51.25,0,1,0,78.485,0,0,1,-19.356
> view matrix models #6,1,0,0,49.273,0,1,0,80.397,0,0,1,-20.936
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #6,-0.9822,-0.16667,0.08663,331.16,0.17541,-0.97881,0.10562,293.51,0.067191,0.11893,0.99063,-44.019
> ui mousemode right "translate selected models"
> view matrix models
> #6,-0.9822,-0.16667,0.08663,345.27,0.17541,-0.97881,0.10562,283.6,0.067191,0.11893,0.99063,-42.745
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 100
shifted from previous position = 1.55
rotated from previous position = 8.72 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97396366 -0.22670208 0.00098283 366.71674840
0.22669059 -0.97394351 -0.00674013 292.56368361
0.00248523 -0.00634184 0.99997680 -18.87501288
Axis 0.00087846 -0.00331365 0.99999412
Axis point 166.57071776 167.30925032 0.00000000
Rotation angle (degrees) 166.89727290
Shift along axis -19.52221010
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5779, steps = 44
shifted from previous position = 0.0173
rotated from previous position = 0.0184 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97394812 -0.22676744 0.00125815 366.69171679
0.22675379 -0.97392774 -0.00689076 292.56519513
0.00278794 -0.00642595 0.99997547 -18.91072952
Axis 0.00102488 -0.00337313 0.99999379
Axis point 166.55468041 167.31425625 0.00000000
Rotation angle (degrees) 166.89348682
Shift along axis -19.52165942
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5779, steps = 40
shifted from previous position = 0.0111
rotated from previous position = 0.00511 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97396602 -0.22669048 0.00127471 366.68317068
0.22667683 -0.97394592 -0.00685277 292.58368623
0.00279496 -0.00638541 0.99997571 -18.91634419
Axis 0.00103084 -0.00335321 0.99999385
Axis point 166.55523860 167.31585422 0.00000000
Rotation angle (degrees) 166.89801502
Shift along axis -19.51933051
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0166
rotated from previous position = 0.0102 degrees
atoms outside contour = 717, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97394873 -0.22676557 0.00111679 366.70668845
0.22675302 -0.97392841 -0.00682063 292.55117728
0.00263436 -0.00638971 0.99997612 -18.89144393
Axis 0.00095017 -0.00334619 0.99999395
Axis point 166.56233174 167.30817757 0.00000000
Rotation angle (degrees) 166.89356673
Shift along axis -19.52182781
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.015
rotated from previous position = 0.0084 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97395827 -0.22672444 0.00114948 366.69002223
0.22671131 -0.97393716 -0.00695707 292.59308439
0.00269686 -0.00651530 0.99997514 -18.88249602
Axis 0.00097428 -0.00341254 0.99999370
Axis point 166.55503254 167.32364957 0.00000000
Rotation angle (degrees) 166.89600018
Shift along axis -19.52360619
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00417
rotated from previous position = 0.0133 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97396518 -0.22669528 0.00104267 366.70802372
0.22668337 -0.97394509 -0.00675411 292.56402558
0.00254663 -0.00634191 0.99997665 -18.88400422
Axis 0.00090916 -0.00331720 0.99999408
Axis point 166.56716537 167.30823928 0.00000000
Rotation angle (degrees) 166.89768476
Shift along axis -19.52098893
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0104
rotated from previous position = 0.0135 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97392321 -0.22687511 0.00112942 366.71861926
0.22686234 -0.97390259 -0.00687170 292.54420051
0.00265896 -0.00643629 0.99997575 -18.88980428
Axis 0.00095961 -0.00337097 0.99999386
Axis point 166.56048730 167.31559529 0.00000000
Rotation angle (degrees) 166.88712791
Shift along axis -19.52393788
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 48
shifted from previous position = 0.0185
rotated from previous position = 0.0111 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97395059 -0.22675755 0.00112825 366.69326289
0.22674438 -0.97392899 -0.00702230 292.59993317
0.00269119 -0.00658355 0.99997471 -18.87185839
Axis 0.00096747 -0.00344637 0.99999359
Axis point 166.55370690 167.33011239 0.00000000
Rotation angle (degrees) 166.89405190
Shift along axis -19.52538081
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00911
rotated from previous position = 0.0153 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97398433 -0.22661234 0.00117221 366.68057243
0.22659948 -0.97396425 -0.00680575 292.58730181
0.00268395 -0.00636307 0.99997615 -18.90145073
Axis 0.00097675 -0.00333561 0.99999396
Axis point 166.55911185 167.31022403 0.00000000
Rotation angle (degrees) 166.90259026
Shift along axis -19.51913911
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.00412
rotated from previous position = 0.0124 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97396106 -0.22671319 0.00099136 366.71522526
0.22670162 -0.97394088 -0.00674866 292.56173154
0.00249554 -0.00634819 0.99997674 -18.87524062
Axis 0.00088323 -0.00331742 0.99999411
Axis point 166.56927493 167.30921266 0.00000000
Rotation angle (degrees) 166.89662146
Shift along axis -19.52178681
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5779, steps = 40
shifted from previous position = 0.0156
rotated from previous position = 0.0165 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97394114 -0.22679760 0.00122704 366.69724593
0.22678415 -0.97392067 -0.00689141 292.55988457
0.00275800 -0.00643355 0.99997550 -18.90477815
Axis 0.00100942 -0.00337523 0.99999379
Axis point 166.55530182 167.31477683 0.00000000
Rotation angle (degrees) 166.89170695
Shift along axis -19.52196890
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5779, steps = 40
shifted from previous position = 0.00675
rotated from previous position = 0.0122 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97389530 -0.22699452 0.00119856 366.72605771
0.22698142 -0.97387514 -0.00682936 292.51514610
0.00271748 -0.00637903 0.99997596 -18.90950650
Axis 0.00099196 -0.00334579 0.99999391
Axis point 166.55709451 167.31310947 0.00000000
Rotation angle (degrees) 166.88011303
Shift along axis -19.52430648
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5779, steps = 40
shifted from previous position = 0.00594
rotated from previous position = 0.0106 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97393362 -0.22683045 0.00112083 366.72068957
0.22681782 -0.97391319 -0.00683992 292.55091351
0.00264309 -0.00640740 0.99997598 -18.89360194
Axis 0.00095341 -0.00335558 0.99999392
Axis point 166.56445639 167.31494793 0.00000000
Rotation angle (degrees) 166.88975147
Shift along axis -19.52552979
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.0176
rotated from previous position = 0.0128 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97398264 -0.22661979 0.00113436 366.68342685
0.22660721 -0.97396257 -0.00678844 292.58704759
0.00264322 -0.00635476 0.99997632 -18.89544580
Axis 0.00095685 -0.00332912 0.99999400
Axis point 166.55977922 167.31103191 0.00000000
Rotation angle (degrees) 166.90214426
Shift along axis -19.51853071
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 36
shifted from previous position = 0.0136
rotated from previous position = 0.00587 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97396576 -0.22669215 0.00116775 366.69485910
0.22667919 -0.97394539 -0.00685064 292.57515404
0.00269031 -0.00640759 0.99997585 -18.89678844
Axis 0.00097724 -0.00335829 0.99999388
Axis point 166.56091036 167.31237441 0.00000000
Rotation angle (degrees) 166.89789714
Shift along axis -19.52087629
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5779, steps = 48
shifted from previous position = 0.00472
rotated from previous position = 0.00498 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97396714 -0.22668579 0.00125157 366.68453532
0.22667224 -0.97394685 -0.00687256 292.57767125
0.00277688 -0.00640995 0.99997560 -18.91108190
Axis 0.00102040 -0.00336444 0.99999382
Axis point 166.55652981 167.31237483 0.00000000
Rotation angle (degrees) 166.89828759
Shift along axis -19.52116036
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0119
rotated from previous position = 0.0128 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97395743 -0.22672848 0.00106220 366.70942983
0.22671643 -0.97393734 -0.00676173 292.55937191
0.00256759 -0.00634482 0.99997658 -18.88715340
Axis 0.00091943 -0.00331988 0.99999407
Axis point 166.56571600 167.30913497 0.00000000
Rotation angle (degrees) 166.89573540
Shift along axis -19.52114263
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00231
rotated from previous position = 0.00639 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97394337 -0.22678849 0.00114101 366.70386274
0.22677580 -0.97392317 -0.00681103 292.55495210
0.00265592 -0.00637480 0.99997616 -18.89658351
Axis 0.00096177 -0.00333999 0.99999396
Axis point 166.55906905 167.31214461 0.00000000
Rotation angle (degrees) 166.89222259
Shift along axis -19.52091570
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.00448
rotated from previous position = 0.00959 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97397919 -0.22663431 0.00119561 366.67966111
0.22662127 -0.97395913 -0.00681355 292.58692613
0.00270866 -0.00636531 0.99997607 -18.90507025
Axis 0.00098894 -0.00333816 0.99999394
Axis point 166.55713217 167.31205509 0.00000000
Rotation angle (degrees) 166.90130272
Shift along axis -19.51903499
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#6) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5779, steps = 48
shifted from previous position = 0.0184
rotated from previous position = 0.0177 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.97391049 -0.22692958 0.00115674 366.72711312
0.22691689 -0.97389058 -0.00677190 292.51645227
0.00266328 -0.00633274 0.99997640 -18.90703337
Axis 0.00096763 -0.00331948 0.99999402
Axis point 166.56221421 167.30786868 0.00000000
Rotation angle (degrees) 166.88392311
Shift along axis -19.52306555
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
Chain information for mono6.cif-coot-1.pdb #7
---
Chain | Description
Aa | No description available
> select subtract #6
Nothing selected
> select add #7
1474 atoms, 1510 bonds, 178 residues, 1 model selected
> view matrix models #7,1,0,0,-12.051,0,1,0,27.609,0,0,1,4.6841
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.77906,0.59727,0.19061,-91.538,-0.61061,0.7918,0.014572,136.81,-0.14222,-0.12774,0.98156,44.141
> ui mousemode right "translate selected models"
> view matrix models
> #7,0.77906,0.59727,0.19061,-94.67,-0.61061,0.7918,0.014572,139.04,-0.14222,-0.12774,0.98156,43.486
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 96
shifted from previous position = 2.43
rotated from previous position = 11.8 degrees
atoms outside contour = 716, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74194729 0.67045441 0.00225931 -69.05619052
-0.67045222 0.74192220 0.00672803 153.63770833
0.00283461 -0.00650661 0.99997481 5.32095375
Axis -0.00986944 -0.00042902 -0.99995120
Axis point 165.02808220 166.58637667 0.00000000
Rotation angle (degrees) 42.10458803
Shift along axis -4.70506141
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 44
shifted from previous position = 0.0173
rotated from previous position = 0.0114 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74181630 0.67059946 0.00222361 -69.05811078
-0.67059704 0.74179132 0.00672630 153.69081665
0.00286120 -0.00648082 0.99997491 5.31016587
Axis -0.00984679 -0.00047537 -0.99995141
Axis point 165.03779394 166.58899264 0.00000000
Rotation angle (degrees) 42.11577217
Shift along axis -4.70296726
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.0144
rotated from previous position = 0.0147 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74184112 0.67057154 0.00236093 -69.07502986
-0.67057059 0.74181714 0.00651281 153.70443531
0.00261593 -0.00641464 0.99997600 5.33961590
Axis -0.00963869 -0.00019012 -0.99995353
Axis point 165.06023227 166.62222900 0.00000000
Rotation angle (degrees) 42.11356199
Shift along axis -4.70279812
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 44
shifted from previous position = 0.0103
rotated from previous position = 0.0168 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74193263 0.67047089 0.00218183 -69.04688884
-0.67046828 0.74190793 0.00670142 153.65794759
0.00287439 -0.00643486 0.99997517 5.30408423
Axis -0.00979586 -0.00051645 -0.99995189
Axis point 165.05228611 166.58084248 0.00000000
Rotation angle (degrees) 42.10580933
Shift along axis -4.70681148
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.00889
rotated from previous position = 0.00747 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74186352 0.67054713 0.00224852 -69.06581999
-0.67054508 0.74183892 0.00665678 153.68614061
0.00279565 -0.00644616 0.99997532 5.31500814
Axis -0.00976988 -0.00040795 -0.99995219
Axis point 165.04943816 166.60580545 0.00000000
Rotation angle (degrees) 42.11170355
Shift along axis -4.70268573
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.00151
rotated from previous position = 0.0071 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74191059 0.67049538 0.00214939 -69.04888257
-0.67049276 0.74188643 0.00663215 153.67702831
0.00285222 -0.00636161 0.99997570 5.29579750
Axis -0.00968924 -0.00052409 -0.99995292
Axis point 165.06659634 166.58791974 0.00000000
Rotation angle (degrees) 42.10764698
Shift along axis -4.70705807
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.00171
rotated from previous position = 0.00272 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74190256 0.67050426 0.00215362 -69.04839319
-0.67050153 0.74187809 0.00667787 153.67334779
0.00287982 -0.00639833 0.99997538 5.29638092
Axis -0.00975058 -0.00054151 -0.99995232
Axis point 165.05820678 166.58414948 0.00000000
Rotation angle (degrees) 42.10835974
Shift along axis -4.70608173
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 28
shifted from previous position = 0.024
rotated from previous position = 0.0135 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74185244 0.67055909 0.00233544 -69.06795668
-0.67055789 0.74182831 0.00654770 153.68690477
0.00265812 -0.00642347 0.99997584 5.33553674
Axis -0.00967146 -0.00024060 -0.99995320
Axis point 165.04564549 166.60661988 0.00000000
Rotation angle (degrees) 42.11260804
Shift along axis -4.70427582
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.0236
rotated from previous position = 0.00804 degrees
atoms outside contour = 717, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74177533 0.67064450 0.00230460 -69.06917014
-0.67064290 0.74175080 0.00662158 153.71978658
0.00273129 -0.00645729 0.99997542 5.32525926
Axis -0.00975051 -0.00031811 -0.99995241
Axis point 165.05286252 166.60946664 0.00000000
Rotation angle (degrees) 42.11923073
Shift along axis -4.70044534
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 48
shifted from previous position = 0.0216
rotated from previous position = 0.0211 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74201519 0.67037912 0.00229981 -69.06156554
-0.67037772 0.74199122 0.00653814 153.64407373
0.00267660 -0.00639314 0.99997598 5.33024374
Axis -0.00964431 -0.00028101 -0.99995345
Axis point 165.06533240 166.60917252 0.00000000
Rotation angle (degrees) 42.09868767
Shift along axis -4.70712072
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.00373
rotated from previous position = 0.00751 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74195376 0.67044704 0.00232059 -69.06786868
-0.67044553 0.74192914 0.00662938 153.64899774
0.00272294 -0.00647452 0.99997533 5.33321151
Axis -0.00977206 -0.00030005 -0.99995221
Axis point 165.04078649 166.60822615 0.00000000
Rotation angle (degrees) 42.10399328
Shift along axis -4.70412357
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 44
shifted from previous position = 0.0131
rotated from previous position = 0.00848 degrees
atoms outside contour = 717, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74187023 0.67053964 0.00226880 -69.06663515
-0.67053762 0.74184536 0.00668967 153.67382958
0.00280259 -0.00648418 0.99997505 5.31929472
Axis -0.00982286 -0.00039802 -0.99995168
Axis point 165.03590227 166.60237836 0.00000000
Rotation angle (degrees) 42.11115312
Shift along axis -4.70177037
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.00518
rotated from previous position = 0.00507 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74181332 0.67060267 0.00224688 -69.06176439
-0.67060048 0.74178845 0.00670073 153.69361136
0.00282682 -0.00647744 0.99997503 5.31477747
Axis -0.00982516 -0.00043238 -0.99995164
Axis point 165.03857754 166.59451704 0.00000000
Rotation angle (degrees) 42.11601671
Shift along axis -4.70243232
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 36
shifted from previous position = 0.0167
rotated from previous position = 0.0155 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74192276 0.67048127 0.00234097 -69.07002610
-0.67048021 0.74189887 0.00650816 153.67789751
0.00262684 -0.00639812 0.99997608 5.33661101
Axis -0.00962420 -0.00021317 -0.99995366
Axis point 165.06443261 166.61863593 0.00000000
Rotation angle (degrees) 42.10657894
Shift along axis -4.70438043
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.0185
rotated from previous position = 0.0168 degrees
atoms outside contour = 719, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74182770 0.67058690 0.00220481 -69.05421042
-0.67058437 0.74180279 0.00672494 153.68796433
0.00287412 -0.00646726 0.99997496 5.30693538
Axis -0.00983585 -0.00049902 -0.99995150
Axis point 165.04100858 166.58466675 0.00000000
Rotation angle (degrees) 42.11479262
Shift along axis -4.70416519
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 36
shifted from previous position = 0.0149
rotated from previous position = 0.0137 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74183628 0.67057693 0.00234848 -69.07290634
-0.67057584 0.74181219 0.00653530 153.70168295
0.00264029 -0.00642295 0.99997589 5.33707228
Axis -0.00966158 -0.00021758 -0.99995330
Axis point 165.05535177 166.61719577 0.00000000
Rotation angle (degrees) 42.11398474
Shift along axis -4.70291165
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 44
shifted from previous position = 0.0171
rotated from previous position = 0.0138 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74183818 0.67057534 0.00219751 -69.05749950
-0.67057277 0.74181329 0.00672313 153.68554025
0.00287822 -0.00646106 0.99997499 5.30435066
Axis -0.00983005 -0.00050753 -0.99995156
Axis point 165.04084296 166.58974840 0.00000000
Rotation angle (degrees) 42.11389536
Shift along axis -4.70325528
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 28
shifted from previous position = 0.0223
rotated from previous position = 0.0144 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74185455 0.67055674 0.00234102 -69.07018953
-0.67055565 0.74183060 0.00651730 153.69418895
0.00263358 -0.00640467 0.99997602 5.33622719
Axis -0.00963482 -0.00021814 -0.99995356
Axis point 165.05516789 166.61342044 0.00000000
Rotation angle (degrees) 42.11241207
Shift along axis -4.70402788
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.00523
rotated from previous position = 0.00364 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74189558 0.67051140 0.00232388 -69.06872187
-0.67051021 0.74187168 0.00651613 153.68756906
0.00264512 -0.00639247 0.99997607 5.33271955
Axis -0.00962550 -0.00023954 -0.99995365
Axis point 165.06543454 166.61628980 0.00000000
Rotation angle (degrees) 42.10890201
Shift along axis -4.70446542
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.0139
rotated from previous position = 0.0144 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74184288 0.67057012 0.00220249 -69.05459197
-0.67056759 0.74181800 0.00672064 153.68277975
0.00287281 -0.00646257 0.99997499 5.30640670
Axis -0.00982939 -0.00049980 -0.99995157
Axis point 165.04083702 166.58555847 0.00000000
Rotation angle (degrees) 42.11349316
Shift along axis -4.70419493
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 40
shifted from previous position = 0.017
rotated from previous position = 0.0151 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74195086 0.67045029 0.00230868 -69.06511298
-0.67044893 0.74192685 0.00654087 153.66491083
0.00267246 -0.00640085 0.99997594 5.33066704
Axis -0.00965107 -0.00027128 -0.99995339
Axis point 165.06209551 166.61139559 0.00000000
Rotation angle (degrees) 42.10418867
Shift along axis -4.70555233
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#7) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5782, steps = 36
shifted from previous position = 0.00155
rotated from previous position = 0.00996 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.74187361 0.67053530 0.00243829 -69.08657903
-0.67053483 0.74184936 0.00652488 153.68939987
0.00256632 -0.00647559 0.99997574 5.35493599
Axis -0.00969365 -0.00009547 -0.99995301
Axis point 165.04969682 166.63674040 0.00000000
Rotation angle (degrees) 42.11080842
Shift along axis -4.69965545
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
Chain information for mono6.cif-coot-1.pdb #8
---
Chain | Description
Aa | No description available
> select add #8
2948 atoms, 3020 bonds, 356 residues, 2 models selected
> select subtract #7
1474 atoms, 1510 bonds, 178 residues, 1 model selected
> view matrix models #8,1,0,0,-29.374,0,1,0,31.949,0,0,1,6.4455
> view matrix models #8,1,0,0,-25.568,0,1,0,46.866,0,0,1,8.8253
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.99985,-0.0032699,-0.016774,-22.223,0.0026658,0.99935,-0.035908,52.793,0.016881,0.035858,0.99921,1.982
> view matrix models
> #8,-0.066514,0.99604,-0.05901,4.0545,-0.9927,-0.072024,-0.096766,340.05,-0.10063,0.052142,0.99356,17.18
> ui mousemode right "translate selected models"
> view matrix models
> #8,-0.066514,0.99604,-0.05901,9.6913,-0.9927,-0.072024,-0.096766,352.4,-0.10063,0.052142,0.99356,19.046
> view matrix models
> #8,-0.066514,0.99604,-0.05901,13.967,-0.9927,-0.072024,-0.096766,344.4,-0.10063,0.052142,0.99356,22.074
> view matrix models
> #8,-0.066514,0.99604,-0.05901,13.919,-0.9927,-0.072024,-0.096766,346.03,-0.10063,0.052142,0.99356,20.927
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 112
shifted from previous position = 8.05
rotated from previous position = 12.2 degrees
atoms outside contour = 719, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10598985 0.99434869 0.00606776 -17.74282046
-0.99436363 0.10597113 0.00332902 314.24533809
0.00266720 -0.00638641 0.99997604 10.17200336
Axis -0.00488522 0.00170991 -0.99998661
Axis point 165.87185825 167.02449439 0.00000000
Rotation angle (degrees) 83.91703032
Shift along axis -9.54785787
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0059
rotated from previous position = 0.00784 degrees
atoms outside contour = 719, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10594552 0.99435347 0.00605937 -17.73474491
-0.99436800 0.10592600 0.00345781 314.23681815
0.00279644 -0.00639158 0.99997566 10.15232120
Axis -0.00495256 0.00164070 -0.99998639
Axis point 165.86259464 167.01528818 0.00000000
Rotation angle (degrees) 83.91961899
Shift along axis -9.54878372
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 36
shifted from previous position = 0.0195
rotated from previous position = 0.0126 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10604837 0.99434283 0.00600576 -17.74634670
-0.99435752 0.10603018 0.00327167 314.23338500
0.00261637 -0.00631883 0.99997661 10.17130852
Axis -0.00482243 0.00170430 -0.99998692
Axis point 165.87412612 167.02071021 0.00000000
Rotation angle (degrees) 83.91362694
Shift along axis -9.55004608
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00875
rotated from previous position = 0.00248 degrees
atoms outside contour = 717, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10606979 0.99434054 0.00600597 -17.74100936
-0.99435534 0.10605184 0.00323417 314.23842078
0.00257892 -0.00631512 0.99997673 10.17843154
Axis -0.00480172 0.00172324 -0.99998699
Axis point 165.88359196 167.02047178 0.00000000
Rotation angle (degrees) 83.91238239
Shift along axis -9.55160257
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 28
shifted from previous position = 0.0145
rotated from previous position = 0.0144 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10600977 0.99434659 0.00606481 -17.74133740
-0.99436111 0.10599015 0.00347098 314.22349899
0.00280854 -0.00639857 0.99997558 10.15279355
Axis -0.00496273 0.00163735 -0.99998635
Axis point 165.86317001 167.01297813 0.00000000
Rotation angle (degrees) 83.91592197
Shift along axis -9.55011421
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0122
rotated from previous position = 0.011 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10616990 0.99432990 0.00599986 -17.75697857
-0.99434424 0.10615099 0.00338807 314.20253393
0.00273196 -0.00632564 0.99997626 10.15611221
Axis -0.00488445 0.00164323 -0.99998672
Axis point 165.87247362 167.01242556 0.00000000
Rotation angle (degrees) 83.90665499
Shift along axis -9.55293713
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00831
rotated from previous position = 0.0146 degrees
atoms outside contour = 719, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10592583 0.99435560 0.00605436 -17.73103870
-0.99437040 0.10590704 0.00334518 314.25234699
0.00268510 -0.00637462 0.99997607 10.16770376
Axis -0.00488739 0.00169416 -0.99998662
Axis point 165.87024015 167.02073574 0.00000000
Rotation angle (degrees) 83.92072075
Shift along axis -9.54851554
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 48
shifted from previous position = 0.00943
rotated from previous position = 0.0189 degrees
atoms outside contour = 719, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10603544 0.99434376 0.00608016 -17.75121457
-0.99435785 0.10601459 0.00365487 314.19652184
0.00298961 -0.00643340 0.99997483 10.13084018
Axis -0.00507272 0.00155403 -0.99998593
Axis point 165.84671996 167.00538434 0.00000000
Rotation angle (degrees) 83.91449997
Shift along axis -9.55237886
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 28
shifted from previous position = 0.0197
rotated from previous position = 0.0238 degrees
atoms outside contour = 715, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10630036 0.99431626 0.00595001 -17.76736101
-0.99433036 0.10628173 0.00336510 314.18503354
0.00271360 -0.00627399 0.99997663 10.15239188
Axis -0.00484700 0.00162742 -0.99998693
Axis point 165.88074715 167.01048177 0.00000000
Rotation angle (degrees) 83.89911918
Shift along axis -9.55482831
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.00214
rotated from previous position = 0.00817 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10617150 0.99432991 0.00596852 -17.75427858
-0.99434428 0.10615318 0.00330796 314.21090058
0.00265562 -0.00628597 0.99997671 10.16290106
Axis -0.00482422 0.00166586 -0.99998698
Axis point 165.87921800 167.01492836 0.00000000
Rotation angle (degrees) 83.90653281
Shift along axis -9.55368686
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 28
shifted from previous position = 0.00113
rotated from previous position = 0.012 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10599339 0.99434869 0.00600638 -17.73722028
-0.99436356 0.10597562 0.00320543 314.25194390
0.00255078 -0.00631228 0.99997682 10.18126445
Axis -0.00478581 0.00173759 -0.99998704
Axis point 165.87966693 167.02434982 0.00000000
Rotation angle (degrees) 83.91677672
Shift along axis -9.55020607
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0193
rotated from previous position = 0.0112 degrees
atoms outside contour = 720, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10590497 0.99435795 0.00603335 -17.72354813
-0.99437253 0.10588604 0.00337597 314.25531371
0.00271807 -0.00635693 0.99997609 10.15851612
Axis -0.00489396 0.00166701 -0.99998664
Axis point 165.87178032 167.01773171 0.00000000
Rotation angle (degrees) 83.92192593
Shift along axis -9.54777540
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 48
shifted from previous position = 0.0209
rotated from previous position = 0.014 degrees
atoms outside contour = 713, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10601684 0.99434610 0.00602094 -17.74312205
-0.99436118 0.10599932 0.00315980 314.25435857
0.00250372 -0.00632199 0.99997688 10.18969845
Axis -0.00476775 0.00176858 -0.99998707
Axis point 165.88246067 167.02914175 0.00000000
Rotation angle (degrees) 83.91541676
Shift along axis -9.54918919
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00461
rotated from previous position = 0.0089 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10604251 0.99434352 0.00599428 -17.74091232
-0.99435804 0.10602410 0.00331084 314.23092274
0.00265658 -0.00631155 0.99997655 10.16529961
Axis -0.00483847 0.00167831 -0.99998689
Axis point 165.87421513 167.01635005 0.00000000
Rotation angle (degrees) 83.91397293
Shift along axis -9.55195041
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 28
shifted from previous position = 0.0127
rotated from previous position = 0.0171 degrees
atoms outside contour = 717, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10597639 0.99435014 0.00606529 -17.73838050
-0.99436432 0.10595599 0.00359265 314.20700839
0.00292970 -0.00641185 0.99997515 10.13673692
Axis -0.00503057 0.00157667 -0.99998610
Axis point 165.84888877 167.00279557 0.00000000
Rotation angle (degrees) 83.91788019
Shift along axis -9.55196076
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 48
shifted from previous position = 0.00711
rotated from previous position = 0.00772 degrees
atoms outside contour = 720, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10608150 0.99433935 0.00599738 -17.74161162
-0.99435324 0.10606161 0.00354460 314.20657996
0.00288844 -0.00633953 0.99997573 10.13258085
Axis -0.00497010 0.00156329 -0.99998643
Axis point 165.86589832 167.00504295 0.00000000
Rotation angle (degrees) 83.91179235
Shift along axis -9.55307016
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.00468
rotated from previous position = 0.00609 degrees
atoms outside contour = 718, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10603047 0.99434450 0.00604582 -17.74420908
-0.99435892 0.10601094 0.00346485 314.22228587
0.00280433 -0.00637909 0.99997572 10.15016802
Axis -0.00494986 0.00162993 -0.99998642
Axis point 165.86475671 167.01406773 0.00000000
Rotation angle (degrees) 83.91472285
Shift along axis -9.55003996
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 36
shifted from previous position = 0.013
rotated from previous position = 0.0104 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10603165 0.99434467 0.00599607 -17.73959204
-0.99435926 0.10601336 0.00328982 314.23753551
0.00263555 -0.00631107 0.99997661 10.16803460
Axis -0.00482765 0.00168978 -0.99998692
Axis point 165.87675273 167.01881544 0.00000000
Rotation angle (degrees) 83.91459332
Shift along axis -9.55126884
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 40
shifted from previous position = 0.0104
rotated from previous position = 0.00536 degrees
atoms outside contour = 719, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10600019 0.99434769 0.00605082 -17.74096877
-0.99436244 0.10598132 0.00335866 314.24084920
0.00269840 -0.00637273 0.99997605 10.16502698
Axis -0.00489325 0.00168570 -0.99998661
Axis point 165.87195034 167.02123790 0.00000000
Rotation angle (degrees) 83.91643871
Shift along axis -9.54836279
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#8) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.578, steps = 44
shifted from previous position = 0.0135
rotated from previous position = 0.00701 degrees
atoms outside contour = 714, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.10601612 0.99434626 0.00600665 -17.73965497
-0.99436103 0.10599808 0.00324581 314.24376975
0.00259077 -0.00631689 0.99997669 10.17584323
Axis -0.00480844 0.00171762 -0.99998696
Axis point 165.87769099 167.02185797 0.00000000
Rotation angle (degrees) 83.91547860
Shift along axis -9.55065920
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/mono6.cif-coot-1.pdb
Chain information for mono6.cif-coot-1.pdb #9
---
Chain | Description
Aa | No description available
> select add #9
2948 atoms, 3020 bonds, 356 residues, 2 models selected
> select subtract #8
1474 atoms, 1510 bonds, 178 residues, 1 model selected
> view matrix models #9,1,0,0,5.788,0,1,0,64.589,0,0,1,17.348
> view matrix models #9,1,0,0,6.1042,0,1,0,68.069,0,0,1,17.208
> ui mousemode right "rotate selected models"
> view matrix models
> #9,-0.61464,0.7881,0.033533,122.73,-0.77506,-0.59547,-0.21141,418.52,-0.14665,-0.15593,0.97682,61.742
> ui mousemode right "translate selected models"
> view matrix models
> #9,-0.61464,0.7881,0.033533,130.47,-0.77506,-0.59547,-0.21141,422.55,-0.14665,-0.15593,0.97682,60.264
> view matrix models
> #9,-0.61464,0.7881,0.033533,132.24,-0.77506,-0.59547,-0.21141,425.7,-0.14665,-0.15593,0.97682,59.723
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 112
shifted from previous position = 3.91
rotated from previous position = 12.4 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58361154 0.81200559 0.00666934 127.48424334
-0.81202868 -0.58361549 -0.00153955 399.68108731
0.00264221 -0.00631419 0.99997657 15.01417365
Axis -0.00293997 0.00247969 -0.99999260
Axis point 166.20063718 167.18521978 0.00000000
Rotation angle (degrees) 125.70592832
Shift along axis -14.39777734
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.0119
rotated from previous position = 0.0174 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58376324 0.81189491 0.00686494 127.49802840
-0.81191887 -0.58376860 -0.00140383 399.67117712
0.00286778 -0.00639328 0.99997545 14.99152038
Axis -0.00307265 0.00246157 -0.99999225
Axis point 166.18022514 167.18462641 0.00000000
Rotation angle (degrees) 125.71672185
Shift along axis -14.39934172
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.00418
rotated from previous position = 0.0096 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58364897 0.81197714 0.00685570 127.47447180
-0.81200077 -0.58365488 -0.00131247 399.65549698
0.00293566 -0.00633286 0.99997563 14.97061880
Axis -0.00309139 0.00241383 -0.99999231
Axis point 166.18186765 167.17686012 0.00000000
Rotation angle (degrees) 125.70867152
Shift along axis -14.39987626
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 36
shifted from previous position = 0.00176
rotated from previous position = 0.00172 degrees
atoms outside contour = 711, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58363052 0.81199057 0.00683629 127.47455292
-0.81201408 -0.58363637 -0.00131225 399.65608055
0.00292437 -0.00631704 0.99997577 14.97004115
Axis -0.00308173 0.00240879 -0.99999235
Axis point 166.18499100 167.17613950 0.00000000
Rotation angle (degrees) 125.70736264
Shift along axis -14.40008054
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.0199
rotated from previous position = 0.0167 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58344577 0.81212457 0.00668650 127.44062178
-0.81214743 -0.58345056 -0.00141331 399.65436472
0.00275346 -0.00625502 0.99997664 14.99192445
Axis -0.00298083 0.00242140 -0.99999263
Axis point 166.19719010 167.17454176 0.00000000
Rotation angle (degrees) 125.69425958
Shift along axis -14.40396783
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.0201
rotated from previous position = 0.0145 degrees
atoms outside contour = 711, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58360328 0.81201033 0.00681426 127.47267660
-0.81203371 -0.58360904 -0.00131531 399.65523094
0.00290882 -0.00630103 0.99997591 14.97061645
Axis -0.00306992 0.00240474 -0.99999240
Axis point 166.18815499 167.17476905 0.00000000
Rotation angle (degrees) 125.70543228
Shift along axis -14.40076471
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.0132
rotated from previous position = 0.0126 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58348064 0.81209966 0.00667002 127.45611927
-0.81212232 -0.58348559 -0.00137984 399.65467195
0.00277130 -0.00622198 0.99997680 14.98286930
Axis -0.00298119 0.00240035 -0.99999268
Axis point 166.19952698 167.17228215 0.00000000
Rotation angle (degrees) 125.69671936
Shift along axis -14.40342004
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.013
rotated from previous position = 0.0115 degrees
atoms outside contour = 711, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58358008 0.81202693 0.00682349 127.46514201
-0.81205044 -0.58358571 -0.00134014 399.65892020
0.00289386 -0.00632309 0.99997582 14.97556659
Axis -0.00306815 0.00241959 -0.99999237
Axis point 166.18900423 167.17750385 0.00000000
Rotation angle (degrees) 125.70379424
Shift along axis -14.39952591
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.0169
rotated from previous position = 0.00476 degrees
atoms outside contour = 711, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58354405 0.81205340 0.00675348 127.45555444
-0.81207647 -0.58354948 -0.00134031 399.64702435
0.00285259 -0.00626647 0.99997629 14.97819130
Axis -0.00303309 0.00240182 -0.99999252
Axis point 166.18699286 167.17196213 0.00000000
Rotation angle (degrees) 125.70122832
Shift along axis -14.40478335
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 44
shifted from previous position = 0.0164
rotated from previous position = 0.0109 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58368351 0.81195254 0.00682870 127.48825507
-0.81197619 -0.58368893 -0.00137625 399.66694515
0.00286839 -0.00634803 0.99997573 14.98211792
Axis -0.00306155 0.00243870 -0.99999234
Axis point 166.18666531 167.18083683 0.00000000
Rotation angle (degrees) 125.71108777
Shift along axis -14.39764617
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.0225
rotated from previous position = 0.00838 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58363721 0.81198683 0.00670776 127.47962418
-0.81200987 -0.58364193 -0.00143440 399.66076051
0.00275022 -0.00628394 0.99997647 14.99527668
Axis -0.00298615 0.00243690 -0.99999257
Axis point 166.18858893 167.17736238 0.00000000
Rotation angle (degrees) 125.70777010
Shift along axis -14.40190593
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.0232
rotated from previous position = 0.0135 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58381225 0.81186023 0.00679902 127.52427874
-0.81188378 -0.58381739 -0.00140875 399.67533682
0.00282567 -0.00634246 0.99997589 14.98729522
Axis -0.00303845 0.00244701 -0.99999239
Axis point 166.18704347 167.18215265 0.00000000
Rotation angle (degrees) 125.72015721
Shift along axis -14.39664866
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.00219
rotated from previous position = 0.015 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58360234 0.81201115 0.00679617 127.47326584
-0.81203456 -0.58360775 -0.00136465 399.66214778
0.00285818 -0.00631514 0.99997597 14.98007386
Axis -0.00304822 0.00242478 -0.99999241
Axis point 166.19062008 167.17810060 0.00000000
Rotation angle (degrees) 125.70535157
Shift along axis -14.39943340
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.015
rotated from previous position = 0.00726 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58350816 0.81207923 0.00674914 127.44774596
-0.81210229 -0.58351354 -0.00134564 399.64691852
0.00284545 -0.00626618 0.99997632 14.97920818
Axis -0.00302953 0.00240346 -0.99999252
Axis point 166.18867501 167.17213221 0.00000000
Rotation angle (degrees) 125.69869353
Shift along axis -14.40466677
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 44
shifted from previous position = 0.0164
rotated from previous position = 0.0103 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58363264 0.81198900 0.00684108 127.47436928
-0.81201262 -0.58363834 -0.00133914 399.65966431
0.00290535 -0.00633661 0.99997570 14.97552048
Axis -0.00307723 0.00242346 -0.99999233
Axis point 166.18557568 167.17817986 0.00000000
Rotation angle (degrees) 125.70750942
Shift along axis -14.39911646
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.00969
rotated from previous position = 0.0138 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58362403 0.81199696 0.00662772 127.49890163
-0.81201955 -0.58362843 -0.00145024 399.67103350
0.00269053 -0.00622823 0.99997698 14.99465598
Axis -0.00294206 0.00242433 -0.99999273
Axis point 166.20324290 167.17662927 0.00000000
Rotation angle (degrees) 125.70681047
Shift along axis -14.40072085
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 44
shifted from previous position = 0.005
rotated from previous position = 0.0085 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58351562 0.81207448 0.00667521 127.46128348
-0.81209724 -0.58352043 -0.00140490 399.65887021
0.00275424 -0.00624070 0.99997673 14.98808845
Axis -0.00297737 0.00241412 -0.99999265
Axis point 166.19782795 167.17488249 0.00000000
Rotation angle (degrees) 125.69918503
Shift along axis -14.40265364
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.0123
rotated from previous position = 0.0127 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58363944 0.81198421 0.00682903 127.47608142
-0.81200781 -0.58364498 -0.00135767 399.66127840
0.00288332 -0.00633762 0.99997576 14.97928353
Axis -0.00306646 0.00242962 -0.99999235
Axis point 166.18590108 167.17889107 0.00000000
Rotation angle (degrees) 125.70798170
Shift along axis -14.39904557
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.0114
rotated from previous position = 0.0122 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58354900 0.81205057 0.00666570 127.47202099
-0.81207336 -0.58355360 -0.00143437 399.66420100
0.00272501 -0.00625006 0.99997675 14.99353376
Axis -0.00296508 0.00242633 -0.99999266
Axis point 166.19952183 167.17649488 0.00000000
Rotation angle (degrees) 125.70153199
Shift along axis -14.40167216
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.00351
rotated from previous position = 0.00232 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58352087 0.81207093 0.00664821 127.46736915
-0.81209364 -0.58352535 -0.00144559 399.66207195
0.00270548 -0.00624250 0.99997685 14.99645588
Axis -0.00295344 0.00242753 -0.99999269
Axis point 166.20112392 167.17519515 0.00000000
Rotation angle (degrees) 125.69953933
Shift along axis -14.40262290
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.00272
rotated from previous position = 0.00999 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58365601 0.81197346 0.00669038 127.49183738
-0.81199651 -0.58366042 -0.00147554 399.67222474
0.00270681 -0.00629378 0.99997653 15.00178586
Axis -0.00296692 0.00245297 -0.99999259
Axis point 166.19493161 167.18094224 0.00000000
Rotation angle (degrees) 125.70908382
Shift along axis -14.39955076
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.0173
rotated from previous position = 0.0121 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58377797 0.81188491 0.00679506 127.51743440
-0.81190833 -0.58378333 -0.00137278 399.66932836
0.00285231 -0.00631836 0.99997597 14.97989601
Axis -0.00304568 0.00242810 -0.99999241
Axis point 166.18728323 167.17908473 0.00000000
Rotation angle (degrees) 125.71774325
Shift along axis -14.39772393
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.00554
rotated from previous position = 0.0125 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58360346 0.81201064 0.00676187 127.47716197
-0.81203390 -0.58360861 -0.00138937 399.66454472
0.00281810 -0.00630171 0.99997617 14.98467334
Axis -0.00302473 0.00242834 -0.99999248
Axis point 166.19322064 167.17829186 0.00000000
Rotation angle (degrees) 125.70541416
Shift along axis -14.39962147
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 44
shifted from previous position = 0.0156
rotated from previous position = 0.00779 degrees
atoms outside contour = 708, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58349563 0.81208827 0.00674419 127.44036324
-0.81211136 -0.58350088 -0.00136530 399.65214306
0.00282649 -0.00627368 0.99997632 14.98347356
Axis -0.00302201 0.00241206 -0.99999252
Axis point 166.18836330 167.17605497 0.00000000
Rotation angle (degrees) 125.69780433
Shift along axis -14.40450231
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.00841
rotated from previous position = 0.0047 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58355886 0.81204276 0.00675410 127.46208897
-0.81206584 -0.58356428 -0.00134235 399.65021478
0.00285141 -0.00626812 0.99997629 14.97737403
Axis -0.00303288 0.00240296 -0.99999251
Axis point 166.18878410 167.17262096 0.00000000
Rotation angle (degrees) 125.70227277
Shift along axis -14.40349650
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 56
shifted from previous position = 0.00776
rotated from previous position = 0.00929 degrees
atoms outside contour = 708, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58359885 0.81201396 0.00676004 127.46869410
-0.81203663 -0.58360525 -0.00118840 399.63373892
0.00298019 -0.00618295 0.99997644 14.94532213
Axis -0.00307534 0.00232740 -0.99999256
Axis point 166.18103227 167.16424959 0.00000000
Rotation angle (degrees) 125.70512385
Shift along axis -14.40711324
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 44
shifted from previous position = 0.0106
rotated from previous position = 0.00902 degrees
atoms outside contour = 711, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58359869 0.81201357 0.00682139 127.46919524
-0.81203705 -0.58360436 -0.00133343 399.65925625
0.00289823 -0.00631741 0.99997584 14.97389398
Axis -0.00306883 0.00241564 -0.99999237
Axis point 166.18820593 167.17752627 0.00000000
Rotation angle (degrees) 125.70510781
Shift along axis -14.39952690
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 24
shifted from previous position = 0.00408
rotated from previous position = 0.00302 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58359302 0.81201742 0.00684791 127.46733807
-0.81204094 -0.58359905 -0.00128833 399.65359817
0.00295029 -0.00631264 0.99997572 14.96533841
Axis -0.00309365 0.00239991 -0.99999233
Axis point 166.18644420 167.17486740 0.00000000
Rotation angle (degrees) 125.70472475
Shift along axis -14.40043160
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.0243
rotated from previous position = 0.00963 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58350769 0.81207959 0.00674664 127.44588549
-0.81210270 -0.58351291 -0.00137052 399.64855462
0.00282378 -0.00627867 0.99997630 14.98528322
Axis -0.00302190 0.00241526 -0.99999252
Axis point 166.18834136 167.17346800 0.00000000
Rotation angle (degrees) 125.69865506
Shift along axis -14.40504306
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 44
shifted from previous position = 0.0241
rotated from previous position = 0.0201 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58376780 0.81189159 0.00687085 127.50524011
-0.81191530 -0.58377378 -0.00130818 399.66027060
0.00294892 -0.00634222 0.99997554 14.96848867
Axis -0.00310012 0.00241525 -0.99999228
Axis point 166.17994060 167.17729032 0.00000000
Rotation angle (degrees) 125.71706245
Shift along axis -14.39837622
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.0182
rotated from previous position = 0.0177 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58356364 0.81203968 0.00671005 127.46863742
-0.81206260 -0.58356869 -0.00138209 399.65595136
0.00279346 -0.00625552 0.99997653 14.98436640
Axis -0.00300067 0.00241152 -0.99999259
Axis point 166.19308742 167.17398779 0.00000000
Rotation angle (degrees) 125.70258875
Shift along axis -14.40296695
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.00599
rotated from previous position = 0.0119 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58365463 0.81197454 0.00667965 127.49017572
-0.81199773 -0.58365851 -0.00155561 399.68240302
0.00263552 -0.00633180 0.99997648 15.01699210
Axis -0.00294103 0.00249025 -0.99999257
Axis point 166.19727108 167.18657733 0.00000000
Rotation angle (degrees) 125.70896951
Shift along axis -14.39652337
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.00549
rotated from previous position = 0.00901 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58364607 0.81198035 0.00672109 127.48636016
-0.81200340 -0.58365101 -0.00140418 399.66071150
0.00278261 -0.00627709 0.99997642 14.98853751
Axis -0.00300057 0.00242518 -0.99999256
Axis point 166.19040712 167.17601307 0.00000000
Rotation angle (degrees) 125.70840454
Shift along axis -14.40170846
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.00917
rotated from previous position = 0.00483 degrees
atoms outside contour = 710, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58358530 0.81202372 0.00675885 127.47230039
-0.81204697 -0.58359042 -0.00139306 399.66389074
0.00281321 -0.00630147 0.99997619 14.98568635
Axis -0.00302227 0.00242946 -0.99999248
Axis point 166.19346860 167.17831128 0.00000000
Rotation angle (degrees) 125.70413126
Shift along axis -14.39986189
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 36
shifted from previous position = 0.00512
rotated from previous position = 0.00592 degrees
atoms outside contour = 709, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58366649 0.81196554 0.00673768 127.49094209
-0.81198861 -0.58367164 -0.00137759 399.66026094
0.00281404 -0.00627497 0.99997635 14.98270655
Axis -0.00301570 0.00241609 -0.99999253
Axis point 166.18925070 167.17561188 0.00000000
Rotation angle (degrees) 125.70985562
Shift along axis -14.40145505
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 40
shifted from previous position = 0.00146
rotated from previous position = 0.00174 degrees
atoms outside contour = 708, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58366910 0.81196380 0.00672086 127.49310255
-0.81198684 -0.58367406 -0.00140266 399.66343186
0.00278388 -0.00627594 0.99997643 14.98748908
Axis -0.00300086 0.00242430 -0.99999256
Axis point 166.19089097 167.17677913 0.00000000
Rotation angle (degrees) 125.71003015
Shift along axis -14.40106097
> fitmap sel inMap #1
Fit molecule mono6.cif-coot-1.pdb (#9) to map JGMVVLP-h_P78_J310.mrc (#1)
using 1474 atoms
average map value = 0.5775, steps = 28
shifted from previous position = 0.0146
rotated from previous position = 0.0113 degrees
atoms outside contour = 711, contour level = 0.55699
Position of mono6.cif-coot-1.pdb (#9) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
-0.58357657 0.81202924 0.00684873 127.46231815
-0.81205280 -0.58358252 -0.00130226 399.65393894
0.00293932 -0.00632150 0.99997570 14.96839966
Axis -0.00309048 0.00240713 -0.99999233
Axis point 166.18662926 167.17555386 0.00000000
Rotation angle (degrees) 125.70356185
Shift along axis -14.40018652
> save /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/krog.pdb relModel #1
> open /Users/nezakoritnik/Desktop/JGMV-VLP/h/Coot6/krog.pdb
Summary of feedback from opening /Users/nezakoritnik/Desktop/JGMV-
VLP/h/Coot6/krog.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 LEUAa 104
GLNAa 109 1 6
Start residue of secondary structure not found: HELIX 2 2 GLNAa 114 ILEAa 117
1 4
Start residue of secondary structure not found: HELIX 3 3 HISAa 124 TYRAa 138
1 15
Start residue of secondary structure not found: HELIX 4 4 ASPAa 142 ILEAa 157
1 16
Start residue of secondary structure not found: HELIX 5 5 LYSAa 183 ILEAa 185
1 3
107 messages similar to the above omitted
Chain information for krog.pdb
---
Chain | Description
10.1/Aa 10.2/Aa 10.3/Aa 10.4/Aa 10.5/Aa 10.6/Aa 10.7/Aa 10.8/Aa | No
description available
> select subtract #9
Nothing selected
> select add #10
11792 atoms, 12080 bonds, 1424 residues, 9 models selected
> view matrix models #10,1,0,0,0.83623,0,1,0,-0.93842,0,0,1,40.156
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.89042,-0.45451,-0.024074,98.74,0.45495,0.89033,0.018142,-61.239,0.013188,-0.027107,0.99955,42.561
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 56
shifted from previous position = 1.93
rotated from previous position = 2.26 degrees
atoms outside contour = 5708, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957937 0.02583960 0.01316807 -6.75159389
-0.02547900 0.99931463 -0.02685328 9.74191849
-0.01385292 0.02650648 0.99955265 -3.40509733
Axis 0.67706946 0.34286305 -0.65116962
Axis point 0.00000000 110.09960749 347.38205284
Rotation angle (degrees) 2.25832113
Shift along axis 0.98614183
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957937 0.02583960 0.01316807 -6.75159389
-0.02547900 0.99931463 -0.02685328 9.74191849
-0.01385292 0.02650648 0.99955265 -3.40509733
Axis 0.67706946 0.34286305 -0.65116962
Axis point 0.00000000 110.09960749 347.38205284
Rotation angle (degrees) 2.25832113
Shift along axis 0.98614183
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957937 0.02583960 0.01316807 -6.75159389
-0.02547900 0.99931463 -0.02685328 9.74191849
-0.01385292 0.02650648 0.99955265 -3.40509733
Axis 0.67706946 0.34286305 -0.65116962
Axis point 0.00000000 110.09960749 347.38205284
Rotation angle (degrees) 2.25832113
Shift along axis 0.98614183
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957937 0.02583960 0.01316807 -6.75159389
-0.02547900 0.99931463 -0.02685328 9.74191849
-0.01385292 0.02650648 0.99955265 -3.40509733
Axis 0.67706946 0.34286305 -0.65116962
Axis point 0.00000000 110.09960749 347.38205284
Rotation angle (degrees) 2.25832113
Shift along axis 0.98614183
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957937 0.02583960 0.01316807 -6.75159389
-0.02547900 0.99931463 -0.02685328 9.74191849
-0.01385292 0.02650648 0.99955265 -3.40509733
Axis 0.67706946 0.34286305 -0.65116962
Axis point 0.00000000 110.09960749 347.38205284
Rotation angle (degrees) 2.25832113
Shift along axis 0.98614183
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957937 0.02583960 0.01316807 -6.75159389
-0.02547900 0.99931463 -0.02685328 9.74191849
-0.01385292 0.02650648 0.99955265 -3.40509733
Axis 0.67706946 0.34286305 -0.65116962
Axis point 0.00000000 110.09960749 347.38205284
Rotation angle (degrees) 2.25832113
Shift along axis 0.98614183
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957937 0.02583960 0.01316807 -6.75159389
-0.02547900 0.99931463 -0.02685328 9.74191849
-0.01385292 0.02650648 0.99955265 -3.40509733
Axis 0.67706946 0.34286305 -0.65116962
Axis point 0.00000000 110.09960749 347.38205284
Rotation angle (degrees) 2.25832113
Shift along axis 0.98614183
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957937 0.02583960 0.01316807 -6.75159389
-0.02547900 0.99931463 -0.02685328 9.74191849
-0.01385292 0.02650648 0.99955265 -3.40509733
Axis 0.67706946 0.34286305 -0.65116962
Axis point 0.00000000 110.09960749 347.38205284
Rotation angle (degrees) 2.25832113
Shift along axis 0.98614183
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 40
shifted from previous position = 0.01
rotated from previous position = 0.00132 degrees
atoms outside contour = 5702, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02584770 0.01318648 -6.75702444
-0.02548645 0.99931413 -0.02686460 9.75495254
-0.01387182 0.02651721 0.99955210 -3.40320491
Axis 0.67702406 0.34317157 -0.65105429
Axis point 0.00000000 109.93918671 347.67991642
Rotation angle (degrees) 2.25940634
Shift along axis 0.98862540
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02584770 0.01318648 -6.75702444
-0.02548645 0.99931413 -0.02686460 9.75495254
-0.01387182 0.02651721 0.99955210 -3.40320491
Axis 0.67702406 0.34317157 -0.65105429
Axis point 0.00000000 109.93918671 347.67991642
Rotation angle (degrees) 2.25940634
Shift along axis 0.98862540
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02584770 0.01318648 -6.75702444
-0.02548645 0.99931413 -0.02686460 9.75495254
-0.01387182 0.02651721 0.99955210 -3.40320491
Axis 0.67702406 0.34317157 -0.65105429
Axis point 0.00000000 109.93918671 347.67991642
Rotation angle (degrees) 2.25940634
Shift along axis 0.98862540
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02584770 0.01318648 -6.75702444
-0.02548645 0.99931413 -0.02686460 9.75495254
-0.01387182 0.02651721 0.99955210 -3.40320491
Axis 0.67702406 0.34317157 -0.65105429
Axis point 0.00000000 109.93918671 347.67991642
Rotation angle (degrees) 2.25940634
Shift along axis 0.98862540
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02584770 0.01318648 -6.75702444
-0.02548645 0.99931413 -0.02686460 9.75495254
-0.01387182 0.02651721 0.99955210 -3.40320491
Axis 0.67702406 0.34317157 -0.65105429
Axis point 0.00000000 109.93918671 347.67991642
Rotation angle (degrees) 2.25940634
Shift along axis 0.98862540
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02584770 0.01318648 -6.75702444
-0.02548645 0.99931413 -0.02686460 9.75495254
-0.01387182 0.02651721 0.99955210 -3.40320491
Axis 0.67702406 0.34317157 -0.65105429
Axis point 0.00000000 109.93918671 347.67991642
Rotation angle (degrees) 2.25940634
Shift along axis 0.98862540
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02584770 0.01318648 -6.75702444
-0.02548645 0.99931413 -0.02686460 9.75495254
-0.01387182 0.02651721 0.99955210 -3.40320491
Axis 0.67702406 0.34317157 -0.65105429
Axis point 0.00000000 109.93918671 347.67991642
Rotation angle (degrees) 2.25940634
Shift along axis 0.98862540
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02584770 0.01318648 -6.75702444
-0.02548645 0.99931413 -0.02686460 9.75495254
-0.01387182 0.02651721 0.99955210 -3.40320491
Axis 0.67702406 0.34317157 -0.65105429
Axis point 0.00000000 109.93918671 347.67991642
Rotation angle (degrees) 2.25940634
Shift along axis 0.98862540
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.0115
rotated from previous position = 0.00167 degrees
atoms outside contour = 5704, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02585497 0.01317211 -6.75917410
-0.02549444 0.99931458 -0.02684037 9.74137345
-0.01385704 0.02649325 0.99955295 -3.40236848
Axis 0.67669341 0.34294399 -0.65151781
Axis point 0.00000000 110.10121572 347.55864648
Rotation angle (degrees) 2.25846932
Shift along axis 0.98356062
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02585497 0.01317211 -6.75917410
-0.02549444 0.99931458 -0.02684037 9.74137345
-0.01385704 0.02649325 0.99955295 -3.40236848
Axis 0.67669341 0.34294399 -0.65151781
Axis point 0.00000000 110.10121572 347.55864648
Rotation angle (degrees) 2.25846932
Shift along axis 0.98356062
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02585497 0.01317211 -6.75917410
-0.02549444 0.99931458 -0.02684037 9.74137345
-0.01385704 0.02649325 0.99955295 -3.40236848
Axis 0.67669341 0.34294399 -0.65151781
Axis point 0.00000000 110.10121572 347.55864648
Rotation angle (degrees) 2.25846932
Shift along axis 0.98356062
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02585497 0.01317211 -6.75917410
-0.02549444 0.99931458 -0.02684037 9.74137345
-0.01385704 0.02649325 0.99955295 -3.40236848
Axis 0.67669341 0.34294399 -0.65151781
Axis point 0.00000000 110.10121572 347.55864648
Rotation angle (degrees) 2.25846932
Shift along axis 0.98356062
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02585497 0.01317211 -6.75917410
-0.02549444 0.99931458 -0.02684037 9.74137345
-0.01385704 0.02649325 0.99955295 -3.40236848
Axis 0.67669341 0.34294399 -0.65151781
Axis point 0.00000000 110.10121572 347.55864648
Rotation angle (degrees) 2.25846932
Shift along axis 0.98356062
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02585497 0.01317211 -6.75917410
-0.02549444 0.99931458 -0.02684037 9.74137345
-0.01385704 0.02649325 0.99955295 -3.40236848
Axis 0.67669341 0.34294399 -0.65151781
Axis point 0.00000000 110.10121572 347.55864648
Rotation angle (degrees) 2.25846932
Shift along axis 0.98356062
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02585497 0.01317211 -6.75917410
-0.02549444 0.99931458 -0.02684037 9.74137345
-0.01385704 0.02649325 0.99955295 -3.40236848
Axis 0.67669341 0.34294399 -0.65151781
Axis point 0.00000000 110.10121572 347.55864648
Rotation angle (degrees) 2.25846932
Shift along axis 0.98356062
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957892 0.02585497 0.01317211 -6.75917410
-0.02549444 0.99931458 -0.02684037 9.74137345
-0.01385704 0.02649325 0.99955295 -3.40236848
Axis 0.67669341 0.34294399 -0.65151781
Axis point 0.00000000 110.10121572 347.55864648
Rotation angle (degrees) 2.25846932
Shift along axis 0.98356062
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 40
shifted from previous position = 0.00235
rotated from previous position = 0.008 degrees
atoms outside contour = 5705, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958231 0.02572308 0.01317319 -6.73839152
-0.02536194 0.99931677 -0.02688431 9.72434192
-0.01385573 0.02653898 0.99955175 -3.40810448
Axis 0.67878909 0.34342587 -0.64907938
Axis point 0.00000000 110.35587349 346.41587355
Rotation angle (degrees) 2.25528032
Shift along axis 0.97777425
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958231 0.02572308 0.01317319 -6.73839152
-0.02536194 0.99931677 -0.02688431 9.72434192
-0.01385573 0.02653898 0.99955175 -3.40810448
Axis 0.67878909 0.34342587 -0.64907938
Axis point 0.00000000 110.35587349 346.41587355
Rotation angle (degrees) 2.25528032
Shift along axis 0.97777425
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958231 0.02572308 0.01317319 -6.73839152
-0.02536194 0.99931677 -0.02688431 9.72434192
-0.01385573 0.02653898 0.99955175 -3.40810448
Axis 0.67878909 0.34342587 -0.64907938
Axis point 0.00000000 110.35587349 346.41587355
Rotation angle (degrees) 2.25528032
Shift along axis 0.97777425
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958231 0.02572308 0.01317319 -6.73839152
-0.02536194 0.99931677 -0.02688431 9.72434192
-0.01385573 0.02653898 0.99955175 -3.40810448
Axis 0.67878909 0.34342587 -0.64907938
Axis point 0.00000000 110.35587349 346.41587355
Rotation angle (degrees) 2.25528032
Shift along axis 0.97777425
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958231 0.02572308 0.01317319 -6.73839152
-0.02536194 0.99931677 -0.02688431 9.72434192
-0.01385573 0.02653898 0.99955175 -3.40810448
Axis 0.67878909 0.34342587 -0.64907938
Axis point 0.00000000 110.35587349 346.41587355
Rotation angle (degrees) 2.25528032
Shift along axis 0.97777425
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958231 0.02572308 0.01317319 -6.73839152
-0.02536194 0.99931677 -0.02688431 9.72434192
-0.01385573 0.02653898 0.99955175 -3.40810448
Axis 0.67878909 0.34342587 -0.64907938
Axis point 0.00000000 110.35587349 346.41587355
Rotation angle (degrees) 2.25528032
Shift along axis 0.97777425
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958231 0.02572308 0.01317319 -6.73839152
-0.02536194 0.99931677 -0.02688431 9.72434192
-0.01385573 0.02653898 0.99955175 -3.40810448
Axis 0.67878909 0.34342587 -0.64907938
Axis point 0.00000000 110.35587349 346.41587355
Rotation angle (degrees) 2.25528032
Shift along axis 0.97777425
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958231 0.02572308 0.01317319 -6.73839152
-0.02536194 0.99931677 -0.02688431 9.72434192
-0.01385573 0.02653898 0.99955175 -3.40810448
Axis 0.67878909 0.34342587 -0.64907938
Axis point 0.00000000 110.35587349 346.41587355
Rotation angle (degrees) 2.25528032
Shift along axis 0.97777425
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 48
shifted from previous position = 0.0205
rotated from previous position = 0.00916 degrees
atoms outside contour = 5700, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957800 0.02588165 0.01318983 -6.75843509
-0.02552016 0.99931298 -0.02687527 9.76873048
-0.01387635 0.02652733 0.99955177 -3.40513523
Axis 0.67676560 0.34300684 -0.65140972
Axis point 0.00000000 109.80953501 347.97773185
Rotation angle (degrees) 2.26115062
Shift along axis 0.99500322
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957800 0.02588165 0.01318983 -6.75843509
-0.02552016 0.99931298 -0.02687527 9.76873048
-0.01387635 0.02652733 0.99955177 -3.40513523
Axis 0.67676560 0.34300684 -0.65140972
Axis point 0.00000000 109.80953501 347.97773185
Rotation angle (degrees) 2.26115062
Shift along axis 0.99500322
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957800 0.02588165 0.01318983 -6.75843509
-0.02552016 0.99931298 -0.02687527 9.76873048
-0.01387635 0.02652733 0.99955177 -3.40513523
Axis 0.67676560 0.34300684 -0.65140972
Axis point 0.00000000 109.80953501 347.97773185
Rotation angle (degrees) 2.26115062
Shift along axis 0.99500322
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957800 0.02588165 0.01318983 -6.75843509
-0.02552016 0.99931298 -0.02687527 9.76873048
-0.01387635 0.02652733 0.99955177 -3.40513523
Axis 0.67676560 0.34300684 -0.65140972
Axis point 0.00000000 109.80953501 347.97773185
Rotation angle (degrees) 2.26115062
Shift along axis 0.99500322
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957800 0.02588165 0.01318983 -6.75843509
-0.02552016 0.99931298 -0.02687527 9.76873048
-0.01387635 0.02652733 0.99955177 -3.40513523
Axis 0.67676560 0.34300684 -0.65140972
Axis point 0.00000000 109.80953501 347.97773185
Rotation angle (degrees) 2.26115062
Shift along axis 0.99500322
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957800 0.02588165 0.01318983 -6.75843509
-0.02552016 0.99931298 -0.02687527 9.76873048
-0.01387635 0.02652733 0.99955177 -3.40513523
Axis 0.67676560 0.34300684 -0.65140972
Axis point 0.00000000 109.80953501 347.97773185
Rotation angle (degrees) 2.26115062
Shift along axis 0.99500322
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957800 0.02588165 0.01318983 -6.75843509
-0.02552016 0.99931298 -0.02687527 9.76873048
-0.01387635 0.02652733 0.99955177 -3.40513523
Axis 0.67676560 0.34300684 -0.65140972
Axis point 0.00000000 109.80953501 347.97773185
Rotation angle (degrees) 2.26115062
Shift along axis 0.99500322
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957800 0.02588165 0.01318983 -6.75843509
-0.02552016 0.99931298 -0.02687527 9.76873048
-0.01387635 0.02652733 0.99955177 -3.40513523
Axis 0.67676560 0.34300684 -0.65140972
Axis point 0.00000000 109.80953501 347.97773185
Rotation angle (degrees) 2.26115062
Shift along axis 0.99500322
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 40
shifted from previous position = 0.00957
rotated from previous position = 0.00315 degrees
atoms outside contour = 5706, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957947 0.02583192 0.01317588 -6.75203037
-0.02547108 0.99931476 -0.02685565 9.74842760
-0.01386058 0.02650875 0.99955249 -3.40363305
Axis 0.67714306 0.34306672 -0.65098579
Axis point 0.00000000 110.00171074 347.56577202
Rotation angle (degrees) 2.25827235
Shift along axis 0.98798742
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957947 0.02583192 0.01317588 -6.75203037
-0.02547108 0.99931476 -0.02685565 9.74842760
-0.01386058 0.02650875 0.99955249 -3.40363305
Axis 0.67714306 0.34306672 -0.65098579
Axis point 0.00000000 110.00171074 347.56577202
Rotation angle (degrees) 2.25827235
Shift along axis 0.98798742
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957947 0.02583192 0.01317588 -6.75203037
-0.02547108 0.99931476 -0.02685565 9.74842760
-0.01386058 0.02650875 0.99955249 -3.40363305
Axis 0.67714306 0.34306672 -0.65098579
Axis point 0.00000000 110.00171074 347.56577202
Rotation angle (degrees) 2.25827235
Shift along axis 0.98798742
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957947 0.02583192 0.01317588 -6.75203037
-0.02547108 0.99931476 -0.02685565 9.74842760
-0.01386058 0.02650875 0.99955249 -3.40363305
Axis 0.67714306 0.34306672 -0.65098579
Axis point 0.00000000 110.00171074 347.56577202
Rotation angle (degrees) 2.25827235
Shift along axis 0.98798742
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957947 0.02583192 0.01317588 -6.75203037
-0.02547108 0.99931476 -0.02685565 9.74842760
-0.01386058 0.02650875 0.99955249 -3.40363305
Axis 0.67714306 0.34306672 -0.65098579
Axis point 0.00000000 110.00171074 347.56577202
Rotation angle (degrees) 2.25827235
Shift along axis 0.98798742
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957947 0.02583192 0.01317588 -6.75203037
-0.02547108 0.99931476 -0.02685565 9.74842760
-0.01386058 0.02650875 0.99955249 -3.40363305
Axis 0.67714306 0.34306672 -0.65098579
Axis point 0.00000000 110.00171074 347.56577202
Rotation angle (degrees) 2.25827235
Shift along axis 0.98798742
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957947 0.02583192 0.01317588 -6.75203037
-0.02547108 0.99931476 -0.02685565 9.74842760
-0.01386058 0.02650875 0.99955249 -3.40363305
Axis 0.67714306 0.34306672 -0.65098579
Axis point 0.00000000 110.00171074 347.56577202
Rotation angle (degrees) 2.25827235
Shift along axis 0.98798742
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957947 0.02583192 0.01317588 -6.75203037
-0.02547108 0.99931476 -0.02685565 9.74842760
-0.01386058 0.02650875 0.99955249 -3.40363305
Axis 0.67714306 0.34306672 -0.65098579
Axis point 0.00000000 110.00171074 347.56577202
Rotation angle (degrees) 2.25827235
Shift along axis 0.98798742
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.00873
rotated from previous position = 0.00169 degrees
atoms outside contour = 5704, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957882 0.02585844 0.01317303 -6.76036019
-0.02549784 0.99931441 -0.02684354 9.74359087
-0.01385814 0.02649635 0.99955285 -3.40246515
Axis 0.67669211 0.34292866 -0.65152722
Axis point 0.00000000 110.09577344 347.60124055
Rotation angle (degrees) 2.25873973
Shift along axis 0.98347284
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957882 0.02585844 0.01317303 -6.76036019
-0.02549784 0.99931441 -0.02684354 9.74359087
-0.01385814 0.02649635 0.99955285 -3.40246515
Axis 0.67669211 0.34292866 -0.65152722
Axis point 0.00000000 110.09577344 347.60124055
Rotation angle (degrees) 2.25873973
Shift along axis 0.98347284
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957882 0.02585844 0.01317303 -6.76036019
-0.02549784 0.99931441 -0.02684354 9.74359087
-0.01385814 0.02649635 0.99955285 -3.40246515
Axis 0.67669211 0.34292866 -0.65152722
Axis point 0.00000000 110.09577344 347.60124055
Rotation angle (degrees) 2.25873973
Shift along axis 0.98347284
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957882 0.02585844 0.01317303 -6.76036019
-0.02549784 0.99931441 -0.02684354 9.74359087
-0.01385814 0.02649635 0.99955285 -3.40246515
Axis 0.67669211 0.34292866 -0.65152722
Axis point 0.00000000 110.09577344 347.60124055
Rotation angle (degrees) 2.25873973
Shift along axis 0.98347284
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957882 0.02585844 0.01317303 -6.76036019
-0.02549784 0.99931441 -0.02684354 9.74359087
-0.01385814 0.02649635 0.99955285 -3.40246515
Axis 0.67669211 0.34292866 -0.65152722
Axis point 0.00000000 110.09577344 347.60124055
Rotation angle (degrees) 2.25873973
Shift along axis 0.98347284
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957882 0.02585844 0.01317303 -6.76036019
-0.02549784 0.99931441 -0.02684354 9.74359087
-0.01385814 0.02649635 0.99955285 -3.40246515
Axis 0.67669211 0.34292866 -0.65152722
Axis point 0.00000000 110.09577344 347.60124055
Rotation angle (degrees) 2.25873973
Shift along axis 0.98347284
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957882 0.02585844 0.01317303 -6.76036019
-0.02549784 0.99931441 -0.02684354 9.74359087
-0.01385814 0.02649635 0.99955285 -3.40246515
Axis 0.67669211 0.34292866 -0.65152722
Axis point 0.00000000 110.09577344 347.60124055
Rotation angle (degrees) 2.25873973
Shift along axis 0.98347284
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957882 0.02585844 0.01317303 -6.76036019
-0.02549784 0.99931441 -0.02684354 9.74359087
-0.01385814 0.02649635 0.99955285 -3.40246515
Axis 0.67669211 0.34292866 -0.65152722
Axis point 0.00000000 110.09577344 347.60124055
Rotation angle (degrees) 2.25873973
Shift along axis 0.98347284
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.00789
rotated from previous position = 0.0101 degrees
atoms outside contour = 5706, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958348 0.02568616 0.01315666 -6.72969650
-0.02532560 0.99931793 -0.02687529 9.71183367
-0.01383801 0.02653090 0.99955221 -3.40908101
Axis 0.67918376 0.34330003 -0.64873300
Axis point 0.00000000 110.49679913 346.10846516
Rotation angle (degrees) 2.25324724
Shift along axis 0.97495555
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958348 0.02568616 0.01315666 -6.72969650
-0.02532560 0.99931793 -0.02687529 9.71183367
-0.01383801 0.02653090 0.99955221 -3.40908101
Axis 0.67918376 0.34330003 -0.64873300
Axis point 0.00000000 110.49679913 346.10846516
Rotation angle (degrees) 2.25324724
Shift along axis 0.97495555
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958348 0.02568616 0.01315666 -6.72969650
-0.02532560 0.99931793 -0.02687529 9.71183367
-0.01383801 0.02653090 0.99955221 -3.40908101
Axis 0.67918376 0.34330003 -0.64873300
Axis point 0.00000000 110.49679913 346.10846516
Rotation angle (degrees) 2.25324724
Shift along axis 0.97495555
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958348 0.02568616 0.01315666 -6.72969650
-0.02532560 0.99931793 -0.02687529 9.71183367
-0.01383801 0.02653090 0.99955221 -3.40908101
Axis 0.67918376 0.34330003 -0.64873300
Axis point 0.00000000 110.49679913 346.10846516
Rotation angle (degrees) 2.25324724
Shift along axis 0.97495555
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958348 0.02568616 0.01315666 -6.72969650
-0.02532560 0.99931793 -0.02687529 9.71183367
-0.01383801 0.02653090 0.99955221 -3.40908101
Axis 0.67918376 0.34330003 -0.64873300
Axis point 0.00000000 110.49679913 346.10846516
Rotation angle (degrees) 2.25324724
Shift along axis 0.97495555
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958348 0.02568616 0.01315666 -6.72969650
-0.02532560 0.99931793 -0.02687529 9.71183367
-0.01383801 0.02653090 0.99955221 -3.40908101
Axis 0.67918376 0.34330003 -0.64873300
Axis point 0.00000000 110.49679913 346.10846516
Rotation angle (degrees) 2.25324724
Shift along axis 0.97495555
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958348 0.02568616 0.01315666 -6.72969650
-0.02532560 0.99931793 -0.02687529 9.71183367
-0.01383801 0.02653090 0.99955221 -3.40908101
Axis 0.67918376 0.34330003 -0.64873300
Axis point 0.00000000 110.49679913 346.10846516
Rotation angle (degrees) 2.25324724
Shift along axis 0.97495555
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958348 0.02568616 0.01315666 -6.72969650
-0.02532560 0.99931793 -0.02687529 9.71183367
-0.01383801 0.02653090 0.99955221 -3.40908101
Axis 0.67918376 0.34330003 -0.64873300
Axis point 0.00000000 110.49679913 346.10846516
Rotation angle (degrees) 2.25324724
Shift along axis 0.97495555
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.00281
rotated from previous position = 0.000537 degrees
atoms outside contour = 5705, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958338 0.02568693 0.01316274 -6.73078049
-0.02532611 0.99931773 -0.02688239 9.71580676
-0.01384429 0.02653783 0.99955194 -3.40976301
Axis 0.67923604 0.34339340 -0.64862884
Axis point 0.00000000 110.47055979 346.14506403
Rotation angle (degrees) 2.25366606
Shift along axis 0.97622584
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958338 0.02568693 0.01316274 -6.73078049
-0.02532611 0.99931773 -0.02688239 9.71580676
-0.01384429 0.02653783 0.99955194 -3.40976301
Axis 0.67923604 0.34339340 -0.64862884
Axis point 0.00000000 110.47055979 346.14506403
Rotation angle (degrees) 2.25366606
Shift along axis 0.97622584
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958338 0.02568693 0.01316274 -6.73078049
-0.02532611 0.99931773 -0.02688239 9.71580676
-0.01384429 0.02653783 0.99955194 -3.40976301
Axis 0.67923604 0.34339340 -0.64862884
Axis point 0.00000000 110.47055979 346.14506403
Rotation angle (degrees) 2.25366606
Shift along axis 0.97622584
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958338 0.02568693 0.01316274 -6.73078049
-0.02532611 0.99931773 -0.02688239 9.71580676
-0.01384429 0.02653783 0.99955194 -3.40976301
Axis 0.67923604 0.34339340 -0.64862884
Axis point 0.00000000 110.47055979 346.14506403
Rotation angle (degrees) 2.25366606
Shift along axis 0.97622584
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958338 0.02568693 0.01316274 -6.73078049
-0.02532611 0.99931773 -0.02688239 9.71580676
-0.01384429 0.02653783 0.99955194 -3.40976301
Axis 0.67923604 0.34339340 -0.64862884
Axis point 0.00000000 110.47055979 346.14506403
Rotation angle (degrees) 2.25366606
Shift along axis 0.97622584
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958338 0.02568693 0.01316274 -6.73078049
-0.02532611 0.99931773 -0.02688239 9.71580676
-0.01384429 0.02653783 0.99955194 -3.40976301
Axis 0.67923604 0.34339340 -0.64862884
Axis point 0.00000000 110.47055979 346.14506403
Rotation angle (degrees) 2.25366606
Shift along axis 0.97622584
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958338 0.02568693 0.01316274 -6.73078049
-0.02532611 0.99931773 -0.02688239 9.71580676
-0.01384429 0.02653783 0.99955194 -3.40976301
Axis 0.67923604 0.34339340 -0.64862884
Axis point 0.00000000 110.47055979 346.14506403
Rotation angle (degrees) 2.25366606
Shift along axis 0.97622584
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958338 0.02568693 0.01316274 -6.73078049
-0.02532611 0.99931773 -0.02688239 9.71580676
-0.01384429 0.02653783 0.99955194 -3.40976301
Axis 0.67923604 0.34339340 -0.64862884
Axis point 0.00000000 110.47055979 346.14506403
Rotation angle (degrees) 2.25366606
Shift along axis 0.97622584
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.00189
rotated from previous position = 0.000343 degrees
atoms outside contour = 5703, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958335 0.02568630 0.01316599 -6.73114575
-0.02532533 0.99931762 -0.02688737 9.71834873
-0.01384765 0.02654274 0.99955176 -3.41026446
Axis 0.67929206 0.34344215 -0.64854436
Axis point 0.00000000 110.45622225 346.16390648
Rotation angle (degrees) 2.25389747
Shift along axis 0.97698454
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958335 0.02568630 0.01316599 -6.73114575
-0.02532533 0.99931762 -0.02688737 9.71834873
-0.01384765 0.02654274 0.99955176 -3.41026446
Axis 0.67929206 0.34344215 -0.64854436
Axis point 0.00000000 110.45622225 346.16390648
Rotation angle (degrees) 2.25389747
Shift along axis 0.97698454
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958335 0.02568630 0.01316599 -6.73114575
-0.02532533 0.99931762 -0.02688737 9.71834873
-0.01384765 0.02654274 0.99955176 -3.41026446
Axis 0.67929206 0.34344215 -0.64854436
Axis point 0.00000000 110.45622225 346.16390648
Rotation angle (degrees) 2.25389747
Shift along axis 0.97698454
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958335 0.02568630 0.01316599 -6.73114575
-0.02532533 0.99931762 -0.02688737 9.71834873
-0.01384765 0.02654274 0.99955176 -3.41026446
Axis 0.67929206 0.34344215 -0.64854436
Axis point 0.00000000 110.45622225 346.16390648
Rotation angle (degrees) 2.25389747
Shift along axis 0.97698454
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958335 0.02568630 0.01316599 -6.73114575
-0.02532533 0.99931762 -0.02688737 9.71834873
-0.01384765 0.02654274 0.99955176 -3.41026446
Axis 0.67929206 0.34344215 -0.64854436
Axis point 0.00000000 110.45622225 346.16390648
Rotation angle (degrees) 2.25389747
Shift along axis 0.97698454
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958335 0.02568630 0.01316599 -6.73114575
-0.02532533 0.99931762 -0.02688737 9.71834873
-0.01384765 0.02654274 0.99955176 -3.41026446
Axis 0.67929206 0.34344215 -0.64854436
Axis point 0.00000000 110.45622225 346.16390648
Rotation angle (degrees) 2.25389747
Shift along axis 0.97698454
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958335 0.02568630 0.01316599 -6.73114575
-0.02532533 0.99931762 -0.02688737 9.71834873
-0.01384765 0.02654274 0.99955176 -3.41026446
Axis 0.67929206 0.34344215 -0.64854436
Axis point 0.00000000 110.45622225 346.16390648
Rotation angle (degrees) 2.25389747
Shift along axis 0.97698454
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958335 0.02568630 0.01316599 -6.73114575
-0.02532533 0.99931762 -0.02688737 9.71834873
-0.01384765 0.02654274 0.99955176 -3.41026446
Axis 0.67929206 0.34344215 -0.64854436
Axis point 0.00000000 110.45622225 346.16390648
Rotation angle (degrees) 2.25389747
Shift along axis 0.97698454
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.00134
rotated from previous position = 0.000247 degrees
atoms outside contour = 5705, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958332 0.02568622 0.01316798 -6.73110378
-0.02532514 0.99931752 -0.02689120 9.72020864
-0.01384972 0.02654651 0.99955163 -3.41073992
Axis 0.67933356 0.34346592 -0.64848830
Axis point 0.00000000 110.44434557 346.17344585
Rotation angle (degrees) 2.25408058
Shift along axis 0.97772063
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958332 0.02568622 0.01316798 -6.73110378
-0.02532514 0.99931752 -0.02689120 9.72020864
-0.01384972 0.02654651 0.99955163 -3.41073992
Axis 0.67933356 0.34346592 -0.64848830
Axis point 0.00000000 110.44434557 346.17344585
Rotation angle (degrees) 2.25408058
Shift along axis 0.97772063
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958332 0.02568622 0.01316798 -6.73110378
-0.02532514 0.99931752 -0.02689120 9.72020864
-0.01384972 0.02654651 0.99955163 -3.41073992
Axis 0.67933356 0.34346592 -0.64848830
Axis point 0.00000000 110.44434557 346.17344585
Rotation angle (degrees) 2.25408058
Shift along axis 0.97772063
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958332 0.02568622 0.01316798 -6.73110378
-0.02532514 0.99931752 -0.02689120 9.72020864
-0.01384972 0.02654651 0.99955163 -3.41073992
Axis 0.67933356 0.34346592 -0.64848830
Axis point 0.00000000 110.44434557 346.17344585
Rotation angle (degrees) 2.25408058
Shift along axis 0.97772063
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958332 0.02568622 0.01316798 -6.73110378
-0.02532514 0.99931752 -0.02689120 9.72020864
-0.01384972 0.02654651 0.99955163 -3.41073992
Axis 0.67933356 0.34346592 -0.64848830
Axis point 0.00000000 110.44434557 346.17344585
Rotation angle (degrees) 2.25408058
Shift along axis 0.97772063
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958332 0.02568622 0.01316798 -6.73110378
-0.02532514 0.99931752 -0.02689120 9.72020864
-0.01384972 0.02654651 0.99955163 -3.41073992
Axis 0.67933356 0.34346592 -0.64848830
Axis point 0.00000000 110.44434557 346.17344585
Rotation angle (degrees) 2.25408058
Shift along axis 0.97772063
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958332 0.02568622 0.01316798 -6.73110378
-0.02532514 0.99931752 -0.02689120 9.72020864
-0.01384972 0.02654651 0.99955163 -3.41073992
Axis 0.67933356 0.34346592 -0.64848830
Axis point 0.00000000 110.44434557 346.17344585
Rotation angle (degrees) 2.25408058
Shift along axis 0.97772063
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958332 0.02568622 0.01316798 -6.73110378
-0.02532514 0.99931752 -0.02689120 9.72020864
-0.01384972 0.02654651 0.99955163 -3.41073992
Axis 0.67933356 0.34346592 -0.64848830
Axis point 0.00000000 110.44434557 346.17344585
Rotation angle (degrees) 2.25408058
Shift along axis 0.97772063
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.0109
rotated from previous position = 0.00146 degrees
atoms outside contour = 5697, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958390 0.02566323 0.01316943 -6.72285620
-0.02530197 0.99931782 -0.02690193 9.72781987
-0.01385084 0.02655753 0.99955133 -3.41219265
Axis 0.67973336 0.34356083 -0.64801892
Axis point 0.00000000 110.33438575 346.24479678
Rotation angle (degrees) 2.25367158
Shift along axis 0.98351358
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958390 0.02566323 0.01316943 -6.72285620
-0.02530197 0.99931782 -0.02690193 9.72781987
-0.01385084 0.02655753 0.99955133 -3.41219265
Axis 0.67973336 0.34356083 -0.64801892
Axis point 0.00000000 110.33438575 346.24479678
Rotation angle (degrees) 2.25367158
Shift along axis 0.98351358
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958390 0.02566323 0.01316943 -6.72285620
-0.02530197 0.99931782 -0.02690193 9.72781987
-0.01385084 0.02655753 0.99955133 -3.41219265
Axis 0.67973336 0.34356083 -0.64801892
Axis point 0.00000000 110.33438575 346.24479678
Rotation angle (degrees) 2.25367158
Shift along axis 0.98351358
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958390 0.02566323 0.01316943 -6.72285620
-0.02530197 0.99931782 -0.02690193 9.72781987
-0.01385084 0.02655753 0.99955133 -3.41219265
Axis 0.67973336 0.34356083 -0.64801892
Axis point 0.00000000 110.33438575 346.24479678
Rotation angle (degrees) 2.25367158
Shift along axis 0.98351358
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958390 0.02566323 0.01316943 -6.72285620
-0.02530197 0.99931782 -0.02690193 9.72781987
-0.01385084 0.02655753 0.99955133 -3.41219265
Axis 0.67973336 0.34356083 -0.64801892
Axis point 0.00000000 110.33438575 346.24479678
Rotation angle (degrees) 2.25367158
Shift along axis 0.98351358
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958390 0.02566323 0.01316943 -6.72285620
-0.02530197 0.99931782 -0.02690193 9.72781987
-0.01385084 0.02655753 0.99955133 -3.41219265
Axis 0.67973336 0.34356083 -0.64801892
Axis point 0.00000000 110.33438575 346.24479678
Rotation angle (degrees) 2.25367158
Shift along axis 0.98351358
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958390 0.02566323 0.01316943 -6.72285620
-0.02530197 0.99931782 -0.02690193 9.72781987
-0.01385084 0.02655753 0.99955133 -3.41219265
Axis 0.67973336 0.34356083 -0.64801892
Axis point 0.00000000 110.33438575 346.24479678
Rotation angle (degrees) 2.25367158
Shift along axis 0.98351358
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958390 0.02566323 0.01316943 -6.72285620
-0.02530197 0.99931782 -0.02690193 9.72781987
-0.01385084 0.02655753 0.99955133 -3.41219265
Axis 0.67973336 0.34356083 -0.64801892
Axis point 0.00000000 110.33438575 346.24479678
Rotation angle (degrees) 2.25367158
Shift along axis 0.98351358
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.0134
rotated from previous position = 0.00994 degrees
atoms outside contour = 5702, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957961 0.02582841 0.01317156 -6.75550643
-0.02546775 0.99931496 -0.02685154 9.73622804
-0.01385607 0.02650480 0.99955265 -3.40521856
Axis 0.67715195 0.34301097 -0.65100592
Axis point 0.00000000 110.21786389 347.23918146
Rotation angle (degrees) 2.25790119
Shift along axis 0.98194609
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957961 0.02582841 0.01317156 -6.75550643
-0.02546775 0.99931496 -0.02685154 9.73622804
-0.01385607 0.02650480 0.99955265 -3.40521856
Axis 0.67715195 0.34301097 -0.65100592
Axis point 0.00000000 110.21786389 347.23918146
Rotation angle (degrees) 2.25790119
Shift along axis 0.98194609
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957961 0.02582841 0.01317156 -6.75550643
-0.02546775 0.99931496 -0.02685154 9.73622804
-0.01385607 0.02650480 0.99955265 -3.40521856
Axis 0.67715195 0.34301097 -0.65100592
Axis point 0.00000000 110.21786389 347.23918146
Rotation angle (degrees) 2.25790119
Shift along axis 0.98194609
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957961 0.02582841 0.01317156 -6.75550643
-0.02546775 0.99931496 -0.02685154 9.73622804
-0.01385607 0.02650480 0.99955265 -3.40521856
Axis 0.67715195 0.34301097 -0.65100592
Axis point 0.00000000 110.21786389 347.23918146
Rotation angle (degrees) 2.25790119
Shift along axis 0.98194609
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957961 0.02582841 0.01317156 -6.75550643
-0.02546775 0.99931496 -0.02685154 9.73622804
-0.01385607 0.02650480 0.99955265 -3.40521856
Axis 0.67715195 0.34301097 -0.65100592
Axis point 0.00000000 110.21786389 347.23918146
Rotation angle (degrees) 2.25790119
Shift along axis 0.98194609
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957961 0.02582841 0.01317156 -6.75550643
-0.02546775 0.99931496 -0.02685154 9.73622804
-0.01385607 0.02650480 0.99955265 -3.40521856
Axis 0.67715195 0.34301097 -0.65100592
Axis point 0.00000000 110.21786389 347.23918146
Rotation angle (degrees) 2.25790119
Shift along axis 0.98194609
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957961 0.02582841 0.01317156 -6.75550643
-0.02546775 0.99931496 -0.02685154 9.73622804
-0.01385607 0.02650480 0.99955265 -3.40521856
Axis 0.67715195 0.34301097 -0.65100592
Axis point 0.00000000 110.21786389 347.23918146
Rotation angle (degrees) 2.25790119
Shift along axis 0.98194609
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957961 0.02582841 0.01317156 -6.75550643
-0.02546775 0.99931496 -0.02685154 9.73622804
-0.01385607 0.02650480 0.99955265 -3.40521856
Axis 0.67715195 0.34301097 -0.65100592
Axis point 0.00000000 110.21786389 347.23918146
Rotation angle (degrees) 2.25790119
Shift along axis 0.98194609
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 28
shifted from previous position = 0.015
rotated from previous position = 0.0114 degrees
atoms outside contour = 5697, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958438 0.02563996 0.01317814 -6.72212092
-0.02527833 0.99931812 -0.02691268 9.72793852
-0.01385919 0.02656837 0.99955092 -3.41221135
Axis 0.68009292 0.34382078 -0.64750358
Axis point 0.00000000 110.33890475 346.11664447
Rotation angle (degrees) 2.25338927
Shift along axis 0.98241960
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958438 0.02563996 0.01317814 -6.72212092
-0.02527833 0.99931812 -0.02691268 9.72793852
-0.01385919 0.02656837 0.99955092 -3.41221135
Axis 0.68009292 0.34382078 -0.64750358
Axis point 0.00000000 110.33890475 346.11664447
Rotation angle (degrees) 2.25338927
Shift along axis 0.98241960
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958438 0.02563996 0.01317814 -6.72212092
-0.02527833 0.99931812 -0.02691268 9.72793852
-0.01385919 0.02656837 0.99955092 -3.41221135
Axis 0.68009292 0.34382078 -0.64750358
Axis point 0.00000000 110.33890475 346.11664447
Rotation angle (degrees) 2.25338927
Shift along axis 0.98241960
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958438 0.02563996 0.01317814 -6.72212092
-0.02527833 0.99931812 -0.02691268 9.72793852
-0.01385919 0.02656837 0.99955092 -3.41221135
Axis 0.68009292 0.34382078 -0.64750358
Axis point 0.00000000 110.33890475 346.11664447
Rotation angle (degrees) 2.25338927
Shift along axis 0.98241960
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958438 0.02563996 0.01317814 -6.72212092
-0.02527833 0.99931812 -0.02691268 9.72793852
-0.01385919 0.02656837 0.99955092 -3.41221135
Axis 0.68009292 0.34382078 -0.64750358
Axis point 0.00000000 110.33890475 346.11664447
Rotation angle (degrees) 2.25338927
Shift along axis 0.98241960
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958438 0.02563996 0.01317814 -6.72212092
-0.02527833 0.99931812 -0.02691268 9.72793852
-0.01385919 0.02656837 0.99955092 -3.41221135
Axis 0.68009292 0.34382078 -0.64750358
Axis point 0.00000000 110.33890475 346.11664447
Rotation angle (degrees) 2.25338927
Shift along axis 0.98241960
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958438 0.02563996 0.01317814 -6.72212092
-0.02527833 0.99931812 -0.02691268 9.72793852
-0.01385919 0.02656837 0.99955092 -3.41221135
Axis 0.68009292 0.34382078 -0.64750358
Axis point 0.00000000 110.33890475 346.11664447
Rotation angle (degrees) 2.25338927
Shift along axis 0.98241960
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958438 0.02563996 0.01317814 -6.72212092
-0.02527833 0.99931812 -0.02691268 9.72793852
-0.01385919 0.02656837 0.99955092 -3.41221135
Axis 0.68009292 0.34382078 -0.64750358
Axis point 0.00000000 110.33890475 346.11664447
Rotation angle (degrees) 2.25338927
Shift along axis 0.98241960
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 48
shifted from previous position = 0.0215
rotated from previous position = 0.0145 degrees
atoms outside contour = 5704, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957866 0.02586934 0.01316384 -6.76314900
-0.02550942 0.99931496 -0.02681180 9.73111719
-0.01384843 0.02646470 0.99955382 -3.40207716
Axis 0.67618574 0.34283984 -0.65209945
Axis point 0.00000000 110.22535458 347.57418840
Rotation angle (degrees) 2.25774427
Shift along axis 0.98156241
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957866 0.02586934 0.01316384 -6.76314900
-0.02550942 0.99931496 -0.02681180 9.73111719
-0.01384843 0.02646470 0.99955382 -3.40207716
Axis 0.67618574 0.34283984 -0.65209945
Axis point 0.00000000 110.22535458 347.57418840
Rotation angle (degrees) 2.25774427
Shift along axis 0.98156241
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957866 0.02586934 0.01316384 -6.76314900
-0.02550942 0.99931496 -0.02681180 9.73111719
-0.01384843 0.02646470 0.99955382 -3.40207716
Axis 0.67618574 0.34283984 -0.65209945
Axis point 0.00000000 110.22535458 347.57418840
Rotation angle (degrees) 2.25774427
Shift along axis 0.98156241
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957866 0.02586934 0.01316384 -6.76314900
-0.02550942 0.99931496 -0.02681180 9.73111719
-0.01384843 0.02646470 0.99955382 -3.40207716
Axis 0.67618574 0.34283984 -0.65209945
Axis point 0.00000000 110.22535458 347.57418840
Rotation angle (degrees) 2.25774427
Shift along axis 0.98156241
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957866 0.02586934 0.01316384 -6.76314900
-0.02550942 0.99931496 -0.02681180 9.73111719
-0.01384843 0.02646470 0.99955382 -3.40207716
Axis 0.67618574 0.34283984 -0.65209945
Axis point 0.00000000 110.22535458 347.57418840
Rotation angle (degrees) 2.25774427
Shift along axis 0.98156241
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957866 0.02586934 0.01316384 -6.76314900
-0.02550942 0.99931496 -0.02681180 9.73111719
-0.01384843 0.02646470 0.99955382 -3.40207716
Axis 0.67618574 0.34283984 -0.65209945
Axis point 0.00000000 110.22535458 347.57418840
Rotation angle (degrees) 2.25774427
Shift along axis 0.98156241
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957866 0.02586934 0.01316384 -6.76314900
-0.02550942 0.99931496 -0.02681180 9.73111719
-0.01384843 0.02646470 0.99955382 -3.40207716
Axis 0.67618574 0.34283984 -0.65209945
Axis point 0.00000000 110.22535458 347.57418840
Rotation angle (degrees) 2.25774427
Shift along axis 0.98156241
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957866 0.02586934 0.01316384 -6.76314900
-0.02550942 0.99931496 -0.02681180 9.73111719
-0.01384843 0.02646470 0.99955382 -3.40207716
Axis 0.67618574 0.34283984 -0.65209945
Axis point 0.00000000 110.22535458 347.57418840
Rotation angle (degrees) 2.25774427
Shift along axis 0.98156241
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.0229
rotated from previous position = 0.0131 degrees
atoms outside contour = 5695, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958373 0.02566599 0.01317648 -6.72486013
-0.02530440 0.99931749 -0.02691176 9.73328076
-0.01385820 0.02656713 0.99955097 -3.41172981
Axis 0.67979430 0.34365009 -0.64790765
Axis point 0.00000000 110.27987420 346.31437167
Rotation angle (degrees) 2.25428875
Shift along axis 0.98380704
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958373 0.02566599 0.01317648 -6.72486013
-0.02530440 0.99931749 -0.02691176 9.73328076
-0.01385820 0.02656713 0.99955097 -3.41172981
Axis 0.67979430 0.34365009 -0.64790765
Axis point 0.00000000 110.27987420 346.31437167
Rotation angle (degrees) 2.25428875
Shift along axis 0.98380704
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958373 0.02566599 0.01317648 -6.72486013
-0.02530440 0.99931749 -0.02691176 9.73328076
-0.01385820 0.02656713 0.99955097 -3.41172981
Axis 0.67979430 0.34365009 -0.64790765
Axis point 0.00000000 110.27987420 346.31437167
Rotation angle (degrees) 2.25428875
Shift along axis 0.98380704
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958373 0.02566599 0.01317648 -6.72486013
-0.02530440 0.99931749 -0.02691176 9.73328076
-0.01385820 0.02656713 0.99955097 -3.41172981
Axis 0.67979430 0.34365009 -0.64790765
Axis point 0.00000000 110.27987420 346.31437167
Rotation angle (degrees) 2.25428875
Shift along axis 0.98380704
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958373 0.02566599 0.01317648 -6.72486013
-0.02530440 0.99931749 -0.02691176 9.73328076
-0.01385820 0.02656713 0.99955097 -3.41172981
Axis 0.67979430 0.34365009 -0.64790765
Axis point 0.00000000 110.27987420 346.31437167
Rotation angle (degrees) 2.25428875
Shift along axis 0.98380704
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958373 0.02566599 0.01317648 -6.72486013
-0.02530440 0.99931749 -0.02691176 9.73328076
-0.01385820 0.02656713 0.99955097 -3.41172981
Axis 0.67979430 0.34365009 -0.64790765
Axis point 0.00000000 110.27987420 346.31437167
Rotation angle (degrees) 2.25428875
Shift along axis 0.98380704
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958373 0.02566599 0.01317648 -6.72486013
-0.02530440 0.99931749 -0.02691176 9.73328076
-0.01385820 0.02656713 0.99955097 -3.41172981
Axis 0.67979430 0.34365009 -0.64790765
Axis point 0.00000000 110.27987420 346.31437167
Rotation angle (degrees) 2.25428875
Shift along axis 0.98380704
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958373 0.02566599 0.01317648 -6.72486013
-0.02530440 0.99931749 -0.02691176 9.73328076
-0.01385820 0.02656713 0.99955097 -3.41172981
Axis 0.67979430 0.34365009 -0.64790765
Axis point 0.00000000 110.27987420 346.31437167
Rotation angle (degrees) 2.25428875
Shift along axis 0.98380704
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 28
shifted from previous position = 0.0144
rotated from previous position = 0.0138 degrees
atoms outside contour = 5707, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957807 0.02589055 0.01316663 -6.76339689
-0.02553035 0.99931404 -0.02682619 9.74438061
-0.01385215 0.02647872 0.99955340 -3.40086299
Axis 0.67612642 0.34270972 -0.65222934
Axis point 0.00000000 110.04857640 347.84728708
Rotation angle (degrees) 2.25914699
Shift along axis 0.98472522
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957807 0.02589055 0.01316663 -6.76339689
-0.02553035 0.99931404 -0.02682619 9.74438061
-0.01385215 0.02647872 0.99955340 -3.40086299
Axis 0.67612642 0.34270972 -0.65222934
Axis point 0.00000000 110.04857640 347.84728708
Rotation angle (degrees) 2.25914699
Shift along axis 0.98472522
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957807 0.02589055 0.01316663 -6.76339689
-0.02553035 0.99931404 -0.02682619 9.74438061
-0.01385215 0.02647872 0.99955340 -3.40086299
Axis 0.67612642 0.34270972 -0.65222934
Axis point 0.00000000 110.04857640 347.84728708
Rotation angle (degrees) 2.25914699
Shift along axis 0.98472522
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957807 0.02589055 0.01316663 -6.76339689
-0.02553035 0.99931404 -0.02682619 9.74438061
-0.01385215 0.02647872 0.99955340 -3.40086299
Axis 0.67612642 0.34270972 -0.65222934
Axis point 0.00000000 110.04857640 347.84728708
Rotation angle (degrees) 2.25914699
Shift along axis 0.98472522
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957807 0.02589055 0.01316663 -6.76339689
-0.02553035 0.99931404 -0.02682619 9.74438061
-0.01385215 0.02647872 0.99955340 -3.40086299
Axis 0.67612642 0.34270972 -0.65222934
Axis point 0.00000000 110.04857640 347.84728708
Rotation angle (degrees) 2.25914699
Shift along axis 0.98472522
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957807 0.02589055 0.01316663 -6.76339689
-0.02553035 0.99931404 -0.02682619 9.74438061
-0.01385215 0.02647872 0.99955340 -3.40086299
Axis 0.67612642 0.34270972 -0.65222934
Axis point 0.00000000 110.04857640 347.84728708
Rotation angle (degrees) 2.25914699
Shift along axis 0.98472522
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957807 0.02589055 0.01316663 -6.76339689
-0.02553035 0.99931404 -0.02682619 9.74438061
-0.01385215 0.02647872 0.99955340 -3.40086299
Axis 0.67612642 0.34270972 -0.65222934
Axis point 0.00000000 110.04857640 347.84728708
Rotation angle (degrees) 2.25914699
Shift along axis 0.98472522
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99957807 0.02589055 0.01316663 -6.76339689
-0.02553035 0.99931404 -0.02682619 9.74438061
-0.01385215 0.02647872 0.99955340 -3.40086299
Axis 0.67612642 0.34270972 -0.65222934
Axis point 0.00000000 110.04857640 347.84728708
Rotation angle (degrees) 2.25914699
Shift along axis 0.98472522
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.0025
rotated from previous position = 0.0127 degrees
atoms outside contour = 5703, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958361 0.02567786 0.01316291 -6.72977120
-0.02531702 0.99931792 -0.02688375 9.71559424
-0.01384425 0.02653931 0.99955190 -3.41021412
Axis 0.67935688 0.34343791 -0.64847871
Axis point 0.00000000 110.48665706 346.11823608
Rotation angle (degrees) 2.25338506
Shift along axis 0.97623830
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958361 0.02567786 0.01316291 -6.72977120
-0.02531702 0.99931792 -0.02688375 9.71559424
-0.01384425 0.02653931 0.99955190 -3.41021412
Axis 0.67935688 0.34343791 -0.64847871
Axis point 0.00000000 110.48665706 346.11823608
Rotation angle (degrees) 2.25338506
Shift along axis 0.97623830
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958361 0.02567786 0.01316291 -6.72977120
-0.02531702 0.99931792 -0.02688375 9.71559424
-0.01384425 0.02653931 0.99955190 -3.41021412
Axis 0.67935688 0.34343791 -0.64847871
Axis point 0.00000000 110.48665706 346.11823608
Rotation angle (degrees) 2.25338506
Shift along axis 0.97623830
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958361 0.02567786 0.01316291 -6.72977120
-0.02531702 0.99931792 -0.02688375 9.71559424
-0.01384425 0.02653931 0.99955190 -3.41021412
Axis 0.67935688 0.34343791 -0.64847871
Axis point 0.00000000 110.48665706 346.11823608
Rotation angle (degrees) 2.25338506
Shift along axis 0.97623830
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958361 0.02567786 0.01316291 -6.72977120
-0.02531702 0.99931792 -0.02688375 9.71559424
-0.01384425 0.02653931 0.99955190 -3.41021412
Axis 0.67935688 0.34343791 -0.64847871
Axis point 0.00000000 110.48665706 346.11823608
Rotation angle (degrees) 2.25338506
Shift along axis 0.97623830
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958361 0.02567786 0.01316291 -6.72977120
-0.02531702 0.99931792 -0.02688375 9.71559424
-0.01384425 0.02653931 0.99955190 -3.41021412
Axis 0.67935688 0.34343791 -0.64847871
Axis point 0.00000000 110.48665706 346.11823608
Rotation angle (degrees) 2.25338506
Shift along axis 0.97623830
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958361 0.02567786 0.01316291 -6.72977120
-0.02531702 0.99931792 -0.02688375 9.71559424
-0.01384425 0.02653931 0.99955190 -3.41021412
Axis 0.67935688 0.34343791 -0.64847871
Axis point 0.00000000 110.48665706 346.11823608
Rotation angle (degrees) 2.25338506
Shift along axis 0.97623830
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958361 0.02567786 0.01316291 -6.72977120
-0.02531702 0.99931792 -0.02688375 9.71559424
-0.01384425 0.02653931 0.99955190 -3.41021412
Axis 0.67935688 0.34343791 -0.64847871
Axis point 0.00000000 110.48665706 346.11823608
Rotation angle (degrees) 2.25338506
Shift along axis 0.97623830
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.00172
rotated from previous position = 0.000634 degrees
atoms outside contour = 5705, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958334 0.02568604 0.01316730 -6.73121785
-0.02532499 0.99931756 -0.02688987 9.71956653
-0.01384901 0.02654521 0.99955168 -3.41057857
Axis 0.67932156 0.34345899 -0.64850454
Axis point 0.00000000 110.45062607 346.17111523
Rotation angle (degrees) 2.25400959
Shift along axis 0.97738678
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958334 0.02568604 0.01316730 -6.73121785
-0.02532499 0.99931756 -0.02688987 9.71956653
-0.01384901 0.02654521 0.99955168 -3.41057857
Axis 0.67932156 0.34345899 -0.64850454
Axis point 0.00000000 110.45062607 346.17111523
Rotation angle (degrees) 2.25400959
Shift along axis 0.97738678
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958334 0.02568604 0.01316730 -6.73121785
-0.02532499 0.99931756 -0.02688987 9.71956653
-0.01384901 0.02654521 0.99955168 -3.41057857
Axis 0.67932156 0.34345899 -0.64850454
Axis point 0.00000000 110.45062607 346.17111523
Rotation angle (degrees) 2.25400959
Shift along axis 0.97738678
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958334 0.02568604 0.01316730 -6.73121785
-0.02532499 0.99931756 -0.02688987 9.71956653
-0.01384901 0.02654521 0.99955168 -3.41057857
Axis 0.67932156 0.34345899 -0.64850454
Axis point 0.00000000 110.45062607 346.17111523
Rotation angle (degrees) 2.25400959
Shift along axis 0.97738678
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958334 0.02568604 0.01316730 -6.73121785
-0.02532499 0.99931756 -0.02688987 9.71956653
-0.01384901 0.02654521 0.99955168 -3.41057857
Axis 0.67932156 0.34345899 -0.64850454
Axis point 0.00000000 110.45062607 346.17111523
Rotation angle (degrees) 2.25400959
Shift along axis 0.97738678
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958334 0.02568604 0.01316730 -6.73121785
-0.02532499 0.99931756 -0.02688987 9.71956653
-0.01384901 0.02654521 0.99955168 -3.41057857
Axis 0.67932156 0.34345899 -0.64850454
Axis point 0.00000000 110.45062607 346.17111523
Rotation angle (degrees) 2.25400959
Shift along axis 0.97738678
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958334 0.02568604 0.01316730 -6.73121785
-0.02532499 0.99931756 -0.02688987 9.71956653
-0.01384901 0.02654521 0.99955168 -3.41057857
Axis 0.67932156 0.34345899 -0.64850454
Axis point 0.00000000 110.45062607 346.17111523
Rotation angle (degrees) 2.25400959
Shift along axis 0.97738678
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958334 0.02568604 0.01316730 -6.73121785
-0.02532499 0.99931756 -0.02688987 9.71956653
-0.01384901 0.02654521 0.99955168 -3.41057857
Axis 0.67932156 0.34345899 -0.64850454
Axis point 0.00000000 110.45062607 346.17111523
Rotation angle (degrees) 2.25400959
Shift along axis 0.97738678
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.00174
rotated from previous position = 0.000236 degrees
atoms outside contour = 5704, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958345 0.02568203 0.01316660 -6.72876615
-0.02532100 0.99931764 -0.02689044 9.71924098
-0.01384822 0.02654585 0.99955167 -3.41100311
Axis 0.67937907 0.34346144 -0.64844299
Axis point 0.00000000 110.43503937 346.13633819
Rotation angle (degrees) 2.25386956
Shift along axis 0.97864262
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958345 0.02568203 0.01316660 -6.72876615
-0.02532100 0.99931764 -0.02689044 9.71924098
-0.01384822 0.02654585 0.99955167 -3.41100311
Axis 0.67937907 0.34346144 -0.64844299
Axis point 0.00000000 110.43503937 346.13633819
Rotation angle (degrees) 2.25386956
Shift along axis 0.97864262
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958345 0.02568203 0.01316660 -6.72876615
-0.02532100 0.99931764 -0.02689044 9.71924098
-0.01384822 0.02654585 0.99955167 -3.41100311
Axis 0.67937907 0.34346144 -0.64844299
Axis point 0.00000000 110.43503937 346.13633819
Rotation angle (degrees) 2.25386956
Shift along axis 0.97864262
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958345 0.02568203 0.01316660 -6.72876615
-0.02532100 0.99931764 -0.02689044 9.71924098
-0.01384822 0.02654585 0.99955167 -3.41100311
Axis 0.67937907 0.34346144 -0.64844299
Axis point 0.00000000 110.43503937 346.13633819
Rotation angle (degrees) 2.25386956
Shift along axis 0.97864262
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958345 0.02568203 0.01316660 -6.72876615
-0.02532100 0.99931764 -0.02689044 9.71924098
-0.01384822 0.02654585 0.99955167 -3.41100311
Axis 0.67937907 0.34346144 -0.64844299
Axis point 0.00000000 110.43503937 346.13633819
Rotation angle (degrees) 2.25386956
Shift along axis 0.97864262
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958345 0.02568203 0.01316660 -6.72876615
-0.02532100 0.99931764 -0.02689044 9.71924098
-0.01384822 0.02654585 0.99955167 -3.41100311
Axis 0.67937907 0.34346144 -0.64844299
Axis point 0.00000000 110.43503937 346.13633819
Rotation angle (degrees) 2.25386956
Shift along axis 0.97864262
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958345 0.02568203 0.01316660 -6.72876615
-0.02532100 0.99931764 -0.02689044 9.71924098
-0.01384822 0.02654585 0.99955167 -3.41100311
Axis 0.67937907 0.34346144 -0.64844299
Axis point 0.00000000 110.43503937 346.13633819
Rotation angle (degrees) 2.25386956
Shift along axis 0.97864262
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958345 0.02568203 0.01316660 -6.72876615
-0.02532100 0.99931764 -0.02689044 9.71924098
-0.01384822 0.02654585 0.99955167 -3.41100311
Axis 0.67937907 0.34346144 -0.64844299
Axis point 0.00000000 110.43503937 346.13633819
Rotation angle (degrees) 2.25386956
Shift along axis 0.97864262
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 44
shifted from previous position = 0.0113
rotated from previous position = 0.000923 degrees
atoms outside contour = 5702, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958347 0.02568321 0.01316290 -6.72584482
-0.02532249 0.99931802 -0.02687483 9.72797036
-0.01384416 0.02653032 0.99955214 -3.40883193
Axis 0.67917390 0.34345917 -0.64865908
Axis point 0.00000000 110.27288271 346.59549306
Rotation angle (degrees) 2.25323646
Shift along axis 0.98431221
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958347 0.02568321 0.01316290 -6.72584482
-0.02532249 0.99931802 -0.02687483 9.72797036
-0.01384416 0.02653032 0.99955214 -3.40883193
Axis 0.67917390 0.34345917 -0.64865908
Axis point 0.00000000 110.27288271 346.59549306
Rotation angle (degrees) 2.25323646
Shift along axis 0.98431221
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958347 0.02568321 0.01316290 -6.72584482
-0.02532249 0.99931802 -0.02687483 9.72797036
-0.01384416 0.02653032 0.99955214 -3.40883193
Axis 0.67917390 0.34345917 -0.64865908
Axis point 0.00000000 110.27288271 346.59549306
Rotation angle (degrees) 2.25323646
Shift along axis 0.98431221
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958347 0.02568321 0.01316290 -6.72584482
-0.02532249 0.99931802 -0.02687483 9.72797036
-0.01384416 0.02653032 0.99955214 -3.40883193
Axis 0.67917390 0.34345917 -0.64865908
Axis point 0.00000000 110.27288271 346.59549306
Rotation angle (degrees) 2.25323646
Shift along axis 0.98431221
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958347 0.02568321 0.01316290 -6.72584482
-0.02532249 0.99931802 -0.02687483 9.72797036
-0.01384416 0.02653032 0.99955214 -3.40883193
Axis 0.67917390 0.34345917 -0.64865908
Axis point 0.00000000 110.27288271 346.59549306
Rotation angle (degrees) 2.25323646
Shift along axis 0.98431221
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958347 0.02568321 0.01316290 -6.72584482
-0.02532249 0.99931802 -0.02687483 9.72797036
-0.01384416 0.02653032 0.99955214 -3.40883193
Axis 0.67917390 0.34345917 -0.64865908
Axis point 0.00000000 110.27288271 346.59549306
Rotation angle (degrees) 2.25323646
Shift along axis 0.98431221
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958347 0.02568321 0.01316290 -6.72584482
-0.02532249 0.99931802 -0.02687483 9.72797036
-0.01384416 0.02653032 0.99955214 -3.40883193
Axis 0.67917390 0.34345917 -0.64865908
Axis point 0.00000000 110.27288271 346.59549306
Rotation angle (degrees) 2.25323646
Shift along axis 0.98431221
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958347 0.02568321 0.01316290 -6.72584482
-0.02532249 0.99931802 -0.02687483 9.72797036
-0.01384416 0.02653032 0.99955214 -3.40883193
Axis 0.67917390 0.34345917 -0.64865908
Axis point 0.00000000 110.27288271 346.59549306
Rotation angle (degrees) 2.25323646
Shift along axis 0.98431221
> fitmap sel inMap #1
Fit molecules krog.pdb (#10.1), krog.pdb (#10.2), krog.pdb (#10.3), krog.pdb
(#10.4), krog.pdb (#10.5), krog.pdb (#10.6), krog.pdb (#10.7), krog.pdb
(#10.8) to map JGMVVLP-h_P78_J310.mrc (#1) using 11792 atoms
average map value = 0.5777, steps = 40
shifted from previous position = 0.00528
rotated from previous position = 0.00113 degrees
atoms outside contour = 5705, contour level = 0.55699
Position of krog.pdb (#10.1) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958336 0.02568250 0.01317273 -6.73204031
-0.02532128 0.99931759 -0.02689196 9.72830651
-0.01385440 0.02654721 0.99955155 -3.41006279
Axis 0.67935810 0.34358872 -0.64839753
Axis point 0.00000000 110.36547467 346.43156543
Rotation angle (degrees) 2.25406087
Shift along axis 0.98014656
Position of krog.pdb (#10.2) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958336 0.02568250 0.01317273 -6.73204031
-0.02532128 0.99931759 -0.02689196 9.72830651
-0.01385440 0.02654721 0.99955155 -3.41006279
Axis 0.67935810 0.34358872 -0.64839753
Axis point 0.00000000 110.36547467 346.43156543
Rotation angle (degrees) 2.25406087
Shift along axis 0.98014656
Position of krog.pdb (#10.3) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958336 0.02568250 0.01317273 -6.73204031
-0.02532128 0.99931759 -0.02689196 9.72830651
-0.01385440 0.02654721 0.99955155 -3.41006279
Axis 0.67935810 0.34358872 -0.64839753
Axis point 0.00000000 110.36547467 346.43156543
Rotation angle (degrees) 2.25406087
Shift along axis 0.98014656
Position of krog.pdb (#10.4) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958336 0.02568250 0.01317273 -6.73204031
-0.02532128 0.99931759 -0.02689196 9.72830651
-0.01385440 0.02654721 0.99955155 -3.41006279
Axis 0.67935810 0.34358872 -0.64839753
Axis point 0.00000000 110.36547467 346.43156543
Rotation angle (degrees) 2.25406087
Shift along axis 0.98014656
Position of krog.pdb (#10.5) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958336 0.02568250 0.01317273 -6.73204031
-0.02532128 0.99931759 -0.02689196 9.72830651
-0.01385440 0.02654721 0.99955155 -3.41006279
Axis 0.67935810 0.34358872 -0.64839753
Axis point 0.00000000 110.36547467 346.43156543
Rotation angle (degrees) 2.25406087
Shift along axis 0.98014656
Position of krog.pdb (#10.6) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958336 0.02568250 0.01317273 -6.73204031
-0.02532128 0.99931759 -0.02689196 9.72830651
-0.01385440 0.02654721 0.99955155 -3.41006279
Axis 0.67935810 0.34358872 -0.64839753
Axis point 0.00000000 110.36547467 346.43156543
Rotation angle (degrees) 2.25406087
Shift along axis 0.98014656
Position of krog.pdb (#10.7) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958336 0.02568250 0.01317273 -6.73204031
-0.02532128 0.99931759 -0.02689196 9.72830651
-0.01385440 0.02654721 0.99955155 -3.41006279
Axis 0.67935810 0.34358872 -0.64839753
Axis point 0.00000000 110.36547467 346.43156543
Rotation angle (degrees) 2.25406087
Shift along axis 0.98014656
Position of krog.pdb (#10.8) relative to JGMVVLP-h_P78_J310.mrc (#1)
coordinates:
Matrix rotation and translation
0.99958336 0.02568250 0.01317273 -6.73204031
-0.02532128 0.99931759 -0.02689196 9.72830651
-0.01385440 0.02654721 0.99955155 -3.41006279
Axis 0.67935810 0.34358872 -0.64839753
Axis point 0.00000000 110.36547467 346.43156543
Rotation angle (degrees) 2.25406087
Shift along axis 0.98014656
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir10,1
Model Number: Z128000N6ZE/A
Chip: Unknown
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 8419.80.7
OS Loader Version: 8419.80.7
Software:
System Software Overview:
System Version: macOS 13.2 (22D49)
Kernel Version: Darwin 22.3.0
Time since boot: 2 hours
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
ASUS VG27V:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 165.00Hz
Mirror: Off
Online: Yes
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.1
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.13
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.3
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.2
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.0
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.0
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.5.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.3
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.8
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
Pillow: 10.0.1
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.7
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.5
sphinxcontrib-htmlhelp: 2.0.4
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.6
sphinxcontrib-serializinghtml: 1.1.9
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.3
urllib3: 2.1.0
wcwidth: 0.2.12
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
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