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#16895 closed defect (duplicate)

defattr re-registration conflict

Reported by:	chimerax-bug-report@…	Owned by:	Eric Pettersen
Priority:	normal	Milestone:
Component:	Structure Analysis	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.4.dev202204210713 (2022-04-21 07:13:17 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.4.dev202204210713 (2022-04-21)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open "C:\\\Users\\\CABED117\\\OneDrive - Université Laval\\\PhD - Session 5
> - Hiver 2025\\\FungAMR_review\\\Figure
> 3\\\scpdr1_best_map_CB_2024-06_final.cxs"

Log from Sun Jun 9 11:21:20 2024UCSF ChimeraX version: 1.6.dev202301260236
(2023-01-26)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "C:\\\Users\\\camil\\\OneDrive - Université Laval\\\Msc - Session 6 -
> Été 2023\\\MARDy_2_0\\\pdr1_best_DNA_AF3_CB_2024.cxs"

Log from Sat Jun 1 13:39:49 2024UCSF ChimeraX version: 1.6.dev202301260236
(2023-01-26)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "C:\\\Users\\\camil\\\OneDrive - Université Laval\\\Msc - Session 6 -
> Été 2023\\\MARDy_2_0\\\pdr1_best_DNA_AF3_CB_2024.cxs"

Log from Wed May 22 09:51:12 2024UCSF ChimeraX version: 1.4.dev202204210713
(2022-04-21)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> C:\\\Users\\\CABED117\\\Downloads\\\fold_s_cerevisiae_pdr1_2024_05_22_model_0.pdb

Chain information for fold_s_cerevisiae_pdr1_2024_05_22_model_0.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> set bgColor white

> ui tool show "Show Sequence Viewer"

> sequence chain /B

Alignment identifier is 1/B  

> select /B:11

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:11-18

164 atoms, 183 bonds, 8 residues, 1 model selected  

> color sel black

> lighting flat

> color sel bynucleotide

> color sel black

> select ~sel

8975 atoms, 9204 bonds, 1088 residues, 1 model selected  

> color sel bynucleotide

> select /A

8567 atoms, 8749 bonds, 1068 residues, 1 model selected  

> color sel dark gray

> lighting depthCue false

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> select /A:195

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:195

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:46

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:46-72

209 atoms, 211 bonds, 27 residues, 1 model selected  

> color sel magenta

> select clear

> open "C:\Users\CABED117\OneDrive - Université Laval\Msc - Session 6 - Été
> 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt" format defattr

No data lines for attribute 'bestc' in best2c_pdr1_attr.txt  

> open "C:\Users\CABED117\OneDrive - Université Laval\Msc - Session 6 - Été
> 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt" format defattr

Bad atom specifier (194) on line 5 of best2c_pdr1_attr.txt  

> open "C:\Users\CABED117\OneDrive - Université Laval\Msc - Session 6 - Été
> 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt" format defattr

Bad atom specifier (194) on line 5 of best2c_pdr1_attr.txt  

> open "C:\Users\CABED117\OneDrive - Université Laval\Msc - Session 6 - Été
> 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt" format defattr

Summary of feedback from opening C:\Users\CABED117\OneDrive - Université
Laval\Msc - Session 6 - Été 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt  
---  
note | Assigned attribute 'bestc' to 91 residues using match mode: 1-to-1  
  

> color byattribute bestc range 1, 8 palette
> #0F767A:#519497:#420DA5:#8361CB:#C7B3FF:#8C0250:#A67490

9139 atoms, 1096 residues, atom bestc range 1 to 8  

> open "C:\Users\CABED117\OneDrive - Université Laval\Msc - Session 6 - Été
> 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt" format defattr

Summary of feedback from opening C:\Users\CABED117\OneDrive - Université
Laval\Msc - Session 6 - Été 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt  
---  
note | Assigned attribute 'bestc' to 91 residues using match mode: 1-to-1  
  

> color byattribute best2c range 1, 8 palette
> #0F767A:#519497:#420DA5:#8361CB:#C7B3FF:#8C0250:#A67490

No known/registered numeric attribute best2c  

> color byattribute best2c range 1, 8 palette
> #0F767A:#519497:#420DA5:#8361CB:#C7B3FF:#8C0250:#A67490

No known/registered numeric attribute best2c  

> open "C:\Users\CABED117\OneDrive - Université Laval\Msc - Session 6 - Été
> 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt" format defattr

Summary of feedback from opening C:\Users\CABED117\OneDrive - Université
Laval\Msc - Session 6 - Été 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt  
---  
note | Assigned attribute 'best2c' to 91 residues using match mode: 1-to-1  
  

> color byattribute best2c range 1, 8 palette
> #0F767A:#519497:#420DA5:#8361CB:#C7B3FF:#8C0250:#A67490

9139 atoms, 1096 residues, atom best2c range 1 to 8  

> select /A

8567 atoms, 8749 bonds, 1068 residues, 1 model selected  

> show sel surfaces

> color byattribute best2c range 1, 8 palette
> #0F767A:#519497:#420DA5:#8361CB:#C7B3FF:#8C0250:#A67490

9139 atoms, 1096 residues, 1 surfaces, atom best2c range 1 to 8  

> hide sel surfaces

> select clear

> save "C:/Users/CABED117/OneDrive - Université Laval/Msc - Session 6 - Été
> 2023/MARDy_2_0/pdr1_best_DNA_AF3_CB_2024.png" width 3000 height 1787
> supersample 3 transparentBackground true

> save "C:/Users/CABED117/OneDrive - Université Laval/Msc - Session 6 - Été
> 2023/MARDy_2_0/pdr1_best_DNA_AF3_CB_2024.cxs"

——— End of log from Wed May 22 09:51:12 2024 ———

opened ChimeraX session  

QWindowsWindow::setDarkBorderToWindow: Unable to set dark window border.  

[Repeated 1 time(s)]

> select /B:11

20 atoms, 21 bonds, 1 residue, 1 model selected  

> select /B:11-17

143 atoms, 159 bonds, 7 residues, 1 model selected  

> select /B:11-19

185 atoms, 207 bonds, 9 residues, 1 model selected  

> select /B:11-19

185 atoms, 207 bonds, 9 residues, 1 model selected  

> select /B:19

21 atoms, 23 bonds, 1 residue, 1 model selected  

> select /B:19

21 atoms, 23 bonds, 1 residue, 1 model selected  

> select /B:18

21 atoms, 23 bonds, 1 residue, 1 model selected  

> select /B:17-18

43 atoms, 48 bonds, 2 residues, 1 model selected  

> select /A:40

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:40-41

15 atoms, 14 bonds, 2 residues, 1 model selected  

> select /B:13

19 atoms, 20 bonds, 1 residue, 1 model selected  

> select /B:12-13

38 atoms, 41 bonds, 2 residues, 1 model selected  

> select /B:18

21 atoms, 23 bonds, 1 residue, 1 model selected  

> select /B:11-18

164 atoms, 183 bonds, 8 residues, 1 model selected  

> select ~sel

8975 atoms, 9204 bonds, 1088 residues, 1 model selected  

> color (#!1 & sel) black

> select ~sel

164 atoms, 183 bonds, 8 residues, 1 model selected  

> color sel bynucleotide

> select /A

8567 atoms, 8749 bonds, 1068 residues, 1 model selected  

> color (#!1 & sel) dark gray

> select clear

> select
> /A:47-52,63-67,125-129,163-181,183-185,187-205,215-217,227-232,252-255,272-276,278-291,299-327,329-336,355-368,373-378,382-388,392-417,430-459,469-483,487-503,509-512,517-541,549-551,558-563,568-577,582-585,589-612,615-618,620-624,627-654,656-663,674-705,712-738,742-766,772-786,789-792,798-802,804-830,834-845,847-849,852-857,862-868,875-890,963-966,1044-1050,1053-1060

4668 atoms, 4727 bonds, 560 residues, 1 model selected  

> select /A:40-41

15 atoms, 14 bonds, 2 residues, 1 model selected  

> open "C:\Users\camil\OneDrive - Université Laval\Msc - Session 6 - Été
> 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt" format defattr

Summary of feedback from opening C:\Users\camil\OneDrive - Université
Laval\Msc - Session 6 - Été 2023\MARDy_2_0\defattr_files\best2c_pdr1_attr.txt  
---  
note | Assigned attribute 'bestc' to 140 residues using match mode: 1-to-1  
  

> color byattribute bestc range 1, 8 palette
> #0F767A:#519497:#420DA5:#8361CB:#C7B3FF:#8C0250:#A67490

9139 atoms, 1096 residues, 1 surfaces, atom bestc range 1 to 8  

> select

9139 atoms, 9389 bonds, 1096 residues, 1 model selected  

> show sel surfaces

> hide sel surfaces

> select clear

> select /A:46

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:46-72

209 atoms, 211 bonds, 27 residues, 1 model selected  

> color (#!1 & sel) #5555ffff

> color (#!1 & sel) #ff00ffff

> color (#!1 & sel) #ffaaffff

> color (#!1 & sel) #ff55ffff

> color (#!1 & sel) #ff00ffff

> color (#!1 & sel) magenta

> color (#!1 & sel) orange

> color (#!1 & sel) magenta

> color (#!1 & sel) white

> color (#!1 & sel) light sea green

> color (#!1 & sel) magenta

> select clear

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-21

154 atoms, 156 bonds, 21 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-30

215 atoms, 218 bonds, 30 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-41

306 atoms, 311 bonds, 41 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-31

226 atoms, 230 bonds, 31 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-34

245 atoms, 249 bonds, 34 residues, 1 model selected  

> select /A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-37

273 atoms, 277 bonds, 37 residues, 1 model selected  

> select /A:36

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select /A:1-36

264 atoms, 268 bonds, 36 residues, 1 model selected  

> hide sel cartoons

> select add /A:916

270 atoms, 273 bonds, 37 residues, 2 models selected  

> select /A:424

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select /A:424-425

14 atoms, 13 bonds, 2 residues, 1 model selected  

> select /A:934

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:934

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:936

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:936-939

29 atoms, 28 bonds, 4 residues, 1 model selected  

> select /A:931

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:931-959

228 atoms, 236 bonds, 29 residues, 1 model selected  

> select /A:941

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:941-971

244 atoms, 251 bonds, 31 residues, 1 model selected  

> select /A:919

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /A:919-946

203 atoms, 207 bonds, 28 residues, 1 model selected  

> select /A:926

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:926-956

235 atoms, 242 bonds, 31 residues, 1 model selected  

> select /A:925

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:925-951

203 atoms, 208 bonds, 27 residues, 1 model selected  

> select /A:936

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:936-950

109 atoms, 111 bonds, 15 residues, 1 model selected  

> select /A:938

11 atoms, 10 bonds, 1 residue, 1 model selected  

> select /A:911-938

207 atoms, 211 bonds, 28 residues, 1 model selected  

> select /A:940

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select /A:904-940

271 atoms, 276 bonds, 37 residues, 1 model selected  

> select clear

> save "C:/Users/camil/OneDrive - Université Laval/Msc - Session 6 - Été
> 2023/MARDy_2_0/pdr1_best_DNA_AF3_CB_2024.png" width 3000 height 2157
> supersample 3 transparentBackground true

> save "C:/Users/camil/OneDrive - Université Laval/Msc - Session 6 - Été
> 2023/MARDy_2_0/pdr1_best_DNA_AF3_CB_2024.cxs"

——— End of log from Sat Jun 1 13:39:49 2024 ———

opened ChimeraX session  

QWindowsWindow::setDarkBorderToWindow: Unable to set dark window border.  

[Repeated 1 time(s)]

> select /A

8567 atoms, 8749 bonds, 1068 residues, 1 model selected  

> select /A:91

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:91-98

58 atoms, 57 bonds, 8 residues, 1 model selected  

> select /A:91

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:91-240

1170 atoms, 1187 bonds, 150 residues, 1 model selected  

> select /A:1068

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /A:91-1068

7885 atoms, 8056 bonds, 978 residues, 1 model selected  

> color (#!1 & sel) dark gray

> open "C:\Users\camil\OneDrive - Université Laval\Msc - Session 6 - Été
> 2023\MARDy_2_0\defattr_files\score_pdr1_attr_final.txt" format defattr

Summary of feedback from opening C:\Users\camil\OneDrive - Université
Laval\Msc - Session 6 - Été
2023\MARDy_2_0\defattr_files\score_pdr1_attr_final.txt  
---  
note | Assigned attribute 'score' to 140 residues using match mode: 1-to-1  
  

> color byattribute score range 1, 8 palette
> #519497:#519497:#8361CB:#8361CB:#8361CB:#A67490:#A67490:#A67490

9139 atoms, 1096 residues, 2 surfaces, atom score range 1 to 8  

> select clear

> save "C:/Users/camil/OneDrive - Université Laval/Msc - Session 6 - Été
> 2023/MARDy_2_0/scpdr1_best_map_CB_2024-06_final.cxs"

——— End of log from Sun Jun 9 11:21:20 2024 ———

opened ChimeraX session  

> open "C:\Users\CABED117\OneDrive - Université Laval\PhD - Session 5 - Hiver
> 2025\FungAMR_review\Figure 3\defattr_files\score_pdr1_attr_final.txt" format
> defattr

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 118, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 193, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 457, in collated_open  
return remember_data_format()  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 428, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\std_commands\\__init__.py", line 82, in open  
defattr(session, data, file_name=file_name, **kw)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\std_commands\defattr.py", line 266, in defattr  
recip_class.register_attr(session, attr_name, "defattr command",
attr_type=attr_type,  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\attributes.py", line 80, in register_attr  
cls._attr_registration.register(session, attr_name, registerer, (attr_type,
can_return_none))  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\attributes.py", line 95, in register  
raise RegistrationConflict("Registration of attr '%s' with %s by %s conflicts
with previous"  
chimerax.core.attributes.RegistrationConflict: Registration of attr 'score'
with Residue by defattr command conflicts with previous registration by
defattr command  
  
chimerax.core.attributes.RegistrationConflict: Registration of attr 'score'
with Residue by defattr command conflicts with previous registration by
defattr command  
  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\attributes.py", line 95, in register  
raise RegistrationConflict("Registration of attr '%s' with %s by %s conflicts
with previous"  
  
See log for complete Python traceback.  
  

> open "C:\Users\CABED117\OneDrive - Université Laval\PhD - Session 5 - Hiver
> 2025\FungAMR_review\Figure 3\defattr_files\score_pdr1_attr_final.txt" format
> defattr

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 118, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 193, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 457, in collated_open  
return remember_data_format()  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 428, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\std_commands\\__init__.py", line 82, in open  
defattr(session, data, file_name=file_name, **kw)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\std_commands\defattr.py", line 266, in defattr  
recip_class.register_attr(session, attr_name, "defattr command",
attr_type=attr_type,  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\attributes.py", line 80, in register_attr  
cls._attr_registration.register(session, attr_name, registerer, (attr_type,
can_return_none))  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\attributes.py", line 95, in register  
raise RegistrationConflict("Registration of attr '%s' with %s by %s conflicts
with previous"  
chimerax.core.attributes.RegistrationConflict: Registration of attr 'score'
with Residue by defattr command conflicts with previous registration by
defattr command  
  
chimerax.core.attributes.RegistrationConflict: Registration of attr 'score'
with Residue by defattr command conflicts with previous registration by
defattr command  
  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\attributes.py", line 95, in register  
raise RegistrationConflict("Registration of attr '%s' with %s by %s conflicts
with previous"  
  
See log for complete Python traceback.  
  

> open "C:\Users\CABED117\OneDrive - Université Laval\PhD - Session 5 - Hiver
> 2025\FungAMR_review\Figure 3\defattr_files\score_pdr1_attr_final.txt" format
> defattr

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 118, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 193, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 457, in collated_open  
return remember_data_format()  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 428, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\std_commands\\__init__.py", line 82, in open  
defattr(session, data, file_name=file_name, **kw)  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\std_commands\defattr.py", line 266, in defattr  
recip_class.register_attr(session, attr_name, "defattr command",
attr_type=attr_type,  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\attributes.py", line 80, in register_attr  
cls._attr_registration.register(session, attr_name, registerer, (attr_type,
can_return_none))  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\attributes.py", line 95, in register  
raise RegistrationConflict("Registration of attr '%s' with %s by %s conflicts
with previous"  
chimerax.core.attributes.RegistrationConflict: Registration of attr 'score'
with Residue by defattr command conflicts with previous registration by
defattr command  
  
chimerax.core.attributes.RegistrationConflict: Registration of attr 'score'
with Residue by defattr command conflicts with previous registration by
defattr command  
  
File "C:\Program Files\ChimeraX 1.4.dev202204210713\bin\lib\site-
packages\chimerax\core\attributes.py", line 95, in register  
raise RegistrationConflict("Registration of attr '%s' with %s by %s conflicts
with previous"  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 31.0.101.2111
OpenGL renderer: Intel(R) HD Graphics 530
OpenGL vendor: Intel

Python: 3.9.11
Locale: en_CA.cp1252
Qt version: PyQt6 6.2.3, Qt 6.2.3
Qt runtime version: 6.2.4
Qt platform: windows

Manufacturer: HP
Model: HP ProDesk 600 G3 SFF
OS: Microsoft Windows 10 Entreprise (Build 19045)
Memory: 59,998,691,328
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-6700 CPU @ 3.40GHz
OSLanguage: fr-CA

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.38.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.3
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4.dev202204210713
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.16.5
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.32.0
    funcparserlib: 1.0.0a1
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.8
    PyQt6-commercial: 6.2.3
    PyQt6-Qt6: 6.2.4
    PyQt6-sip: 13.2.1
    PyQt6-WebEngine-commercial: 6.2.1
    PyQt6-WebEngine-Qt6: 6.2.4
    python-dateutil: 2.8.2
    pytz: 2022.1
    pywin32: 303
    pyzmq: 22.3.0
    qtconsole: 5.3.0
    QtPy: 2.0.1
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by Eric Pettersen, 10 months ago

Component:	Unassigned → Structure Analysis
Owner:	set to Eric Pettersen
Platform:	→ all
Project:	→ ChimeraX
Status:	new → accepted
Summary:	ChimeraX bug report submission → defattr re-registration conflict

comment:2 by Eric Pettersen, 10 months ago

Resolution:	→ duplicate
Status:	accepted → closed

Fixed on 4/4/24

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