Boltz batch ligand run gives error in nogui mode

[goddard@…]

The following bug report has been submitted:
Platform:        macOS-26.1-arm64-arm-64bit
ChimeraX Version: 1.11.dev202510272022 (2025-10-27 20:22:21 UTC)
Description
Running a boltz prediction in each ligand mode in nogui produces an error when the predictions finish trying to show the ligand results GUI table.  Needs to check if there is a gui.

Log:
Startup Messages  
---  
note | Updated animation length to 0:05.00  
  
UCSF ChimeraX version: 1.11.dev202510272022 (2025-10-27)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> boltz ligandtable /Users/goddard/Desktop/boltz/boltz_hiv_chris

> open
> /Users/goddard/Desktop/boltz/boltz_hiv_chris/boltz_results_boltz_hiv_chris/predictions/darunavir/darunavir_model_0.cif
> /Users/goddard/Desktop/boltz/boltz_hiv_chris/boltz_results_boltz_hiv_chris/predictions/acyclovir/acyclovir_model_0.cif

Summary of feedback from opening
/Users/goddard/Desktop/boltz/boltz_hiv_chris/boltz_results_boltz_hiv_chris/predictions/darunavir/darunavir_model_0.cif  
---  
warning | Unable to fetch template for 'LIG1': will connect using distance criteria  
  
Summary of feedback from opening
/Users/goddard/Desktop/boltz/boltz_hiv_chris/boltz_results_boltz_hiv_chris/predictions/acyclovir/acyclovir_model_0.cif  
---  
warning | Unable to fetch template for 'LIG1': will connect using distance criteria  
  
darunavir_model_0.cif title:  
. [more info...]  
  
Chain information for darunavir_model_0.cif #1  
---  
Chain | Description  
A B | .  
  
Non-standard residues in darunavir_model_0.cif #1  
---  
LIG1 — (LIG1)  
  
Color darunavir_model_0.cif by residue attribute pLDDT_score  
acyclovir_model_0.cif title:  
. [more info...]  
  
Chain information for acyclovir_model_0.cif #2  
---  
Chain | Description  
A B | .  
  
Non-standard residues in acyclovir_model_0.cif #2  
---  
LIG1 — (LIG1)  
  
Color acyclovir_model_0.cif by residue attribute pLDDT_score  
Computing secondary structure  
[Repeated 1 time(s)]

> mmaker #2 to #1 logParameters false

Matchmaker darunavir_model_0.cif, chain A (#1) with acyclovir_model_0.cif,
chain B (#2), sequence alignment score = 504.7  
RMSD between 99 pruned atom pairs is 0.394 angstroms; (across all 99 pairs:
0.394)  
  




OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M2 Ultra
OpenGL vendor: Apple

Python: 3.11.9
Locale: en_US.UTF-8
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac Studio
      Model Identifier: Mac14,14
      Model Number: Z1800003VLL/A
      Chip: Apple M2 Ultra
      Total Number of Cores: 24 (16 performance and 8 efficiency)
      Memory: 64 GB
      System Firmware Version: 13822.41.1
      OS Loader Version: 13822.41.1

Software:

    System Software Overview:

      System Version: macOS 26.1 (25B78)
      Kernel Version: Darwin 25.1.0
      Time since boot: 1 day, 4 hours, 17 minutes

Graphics/Displays:

    Apple M2 Ultra:

      Chipset Model: Apple M2 Ultra
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 60
      Vendor: Apple (0x106b)
      Metal Support: Metal 4
      Displays:
        PHL 278B1:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported


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[Tom Goddard]

Fixed.

Don't show ligand table if there is no gui. Unfortunately the writing of the results CSV file is part of the GUI table class so I also can't write the .csv file. It is usin g the GUI table widget ability to write .csv. Should allow writing the .csv without the GUI.