Segmentations: chimerax misspelled in import statement

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26100
ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.10.1 (2025-07-24)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open D:/autodock_result/RESULT/快照/1.cxs

Opened emd_15940.map as #1, grid size 448,448,448, pixel 1.22, shown at level
0.035, step 2, values float32  
Log from Tue Nov 18 17:39:57 2025UCSF ChimeraX version: 1.10.1 (2025-07-24)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open D:/autodock_result/RESULT/冷冻电镜/emd_15940.map/emd_15940.map

Opened emd_15940.map as #1, grid size 448,448,448, pixel 1.22, shown at level
0.00952, step 2, values float32  

> open 8ba8

8ba8 title:  
CryoEM structure of GroEL-ADP.BeF3-Rubisco. [more info...]  
  
Chain information for 8ba8 #2  
---  
Chain | Description | UniProt  
A B C D E F G H I J K L M N | Chaperonin GroEL | CH60_ECOLI 1-548  
  
Non-standard residues in 8ba8 #2  
---  
ADP — adenosine-5'-diphosphate  
BEF — beryllium trifluoride ion  
K — potassium ion  
MG — magnesium ion  
  

> fitmap #2 inMap #1

Fit molecule 8ba8 (#2) to map emd_15940.map (#1) using 110327 atoms  
average map value = 0.04317, steps = 40  
shifted from previous position = 0.0213  
rotated from previous position = 0.0498 degrees  
atoms outside contour = 363, contour level = 0.0095236  
  
Position of 8ba8 (#2) relative to emd_15940.map (#1) coordinates:  
Matrix rotation and translation  
0.99999982 0.00048610 -0.00035367 -0.04117266  
-0.00048632 0.99999969 -0.00062706 0.30098413  
0.00035336 0.00062723 0.99999974 -0.24780932  
Axis 0.72191564 -0.40693457 -0.55968032  
Axis point 0.00000000 407.33192568 471.01854218  
Rotation angle (degrees) 0.04977448  
Shift along axis -0.01351004  
  

> volume #1 transparency 0.5 level 0.035

> color #2/A lime

> color #2/B-H grey

> color #1/A-H grey

> show #2/ADP,BeF3,K,H2O

> show #2/A

> show #2/ADP,BeF3,K,H2O

> hide ~#2/A,~#2/ADP,~#2/BeF3,~#2/K,~#2/H2O

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hide ~#2/A,~#2/ADP,~#2/BeF3,~#2/K,~#2/H2O

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hide atoms ~( #2/A | #2/ADP | #2/BeF3 | #2/K | #2/H2O )

Expected ',' or a keyword  

> hide atoms ~(#2/A|#2/ADP|#2/BeF3|#2/K|#2/H2O)

Expected ',' or a keyword  

> hide atoms ~(#2/A|#2/ADP|#2/BeF3|#2/K|#2/H2O)

Expected ',' or a keyword  

> hide atoms ~(#2/A,#2/ADP,#2/BEF3,#2/K,#2/H2O)

Expected ',' or a keyword  

> hide #2

> show #2/A

> show #2/ADP,BeF3,K,H2O

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!2 models

> style #2/A cartoon

Expected a keyword  

> hide #!1 models

> cd C:/Users/Yeqi/Desktop

Current working directory is: C:\Users\Yeqi\Desktop  

> save D:/autodock_result/RESULT/快照/1.cxs

——— End of log from Tue Nov 18 17:39:57 2025 ———

> view name session-start

opened ChimeraX session  

> hide atoms

> show atoms

> show #!1 models

> open

Missing or invalid "fileNames" argument: Expected a file name  

> open 8ba8

8ba8 title:  
CryoEM structure of GroEL-ADP.BeF3-Rubisco. [more info...]  
  
Chain information for 8ba8 #3  
---  
Chain | Description | UniProt  
A B C D E F G H I J K L M N | Chaperonin GroEL | CH60_ECOLI 1-548  
  
Non-standard residues in 8ba8 #3  
---  
ADP — adenosine-5'-diphosphate  
BEF — beryllium trifluoride ion  
K — potassium ion  
MG — magnesium ion  
  

> hide #!2 models

> hide #!3 models

> show #!2 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!3 models

> show #!2 models

> fitmap #2 inMap #1

Fit molecule 8ba8 (#2) to map emd_15940.map (#1) using 110327 atoms  
average map value = 0.04317, steps = 36  
shifted from previous position = 0.000806  
rotated from previous position = 0.0116 degrees  
atoms outside contour = 55536, contour level = 0.035  
  
Position of 8ba8 (#2) relative to emd_15940.map (#1) coordinates:  
Matrix rotation and translation  
0.99999970 0.00068860 -0.00036188 -0.09442378  
-0.00068884 0.99999956 -0.00064299 0.36064886  
0.00036143 0.00064324 0.99999973 -0.25361558  
Axis 0.63717433 -0.35831707 -0.68236189  
Axis point 514.98782255 122.23635377 0.00000000  
Rotation angle (degrees) 0.05782962  
Shift along axis -0.01633344  
  

> fitmap #3 inMap #1

Fit molecule 8ba8 (#3) to map emd_15940.map (#1) using 110327 atoms  
average map value = 0.04317, steps = 40  
shifted from previous position = 0.0213  
rotated from previous position = 0.0498 degrees  
atoms outside contour = 55543, contour level = 0.035  
  
Position of 8ba8 (#3) relative to emd_15940.map (#1) coordinates:  
Matrix rotation and translation  
0.99999982 0.00048610 -0.00035367 -0.04117266  
-0.00048632 0.99999969 -0.00062706 0.30098413  
0.00035336 0.00062723 0.99999974 -0.24780932  
Axis 0.72191564 -0.40693457 -0.55968032  
Axis point 0.00000000 407.33192568 471.01854218  
Rotation angle (degrees) 0.04977448  
Shift along axis -0.01351004  
  

> hide #!3 models

> show #!3 models

> hide #!1 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> hide #!3 models

> show #!3 models

> show #!2 models

> show #!1 models

> color #2 bychain

> color #3 bychain

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> show #!1 models

> close all

> open 1grl format mmcif fromDatabase pdb

1grl title:  
The crystal structure of the bacterial chaperonin groel At 2.8 angstroms [more
info...]  
  
Chain information for 1grl #1  
---  
Chain | Description | UniProt  
A B C D E F G | GROEL (HSP60 CLASS) | CH60_ECOLI 2-548  
  
1grl mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
2| software_defined_assembly  
  

> open D:/autodock_result/RESULT/冷冻电镜/emd_1080.map/emd_1080.map

Opened emd_1080.map as #2, grid size 100,100,100, pixel 2.7, shown at level
1.68, step 1, values float32  

> close #1

> close #2

> open D:/autodock_result/RESULT/冷冻电镜/emd_1080.map/emd_1080.map

Opened emd_1080.map as #1, grid size 100,100,100, pixel 2.7, shown at level
1.68, step 1, values float32  

> open 1grl

1grl title:  
The crystal structure of the bacterial chaperonin groel At 2.8 angstroms [more
info...]  
  
Chain information for 1grl #2  
---  
Chain | Description | UniProt  
A B C D E F G | GROEL (HSP60 CLASS) | CH60_ECOLI 2-548  
  
1grl mmCIF Assemblies  
---  
1| author_and_software_defined_assembly  
2| software_defined_assembly  
  

> fitmap #2 inMap #1

Fit molecule 1grl (#2) to map emd_1080.map (#1) using 29274 atoms  
average map value = 1.33, steps = 160  
shifted from previous position = 43.6  
rotated from previous position = 25.7 degrees  
atoms outside contour = 23229, contour level = 1.6751  
  
Position of 1grl (#2) relative to emd_1080.map (#1) coordinates:  
Matrix rotation and translation  
0.90168160 -0.43226797 -0.01070926 39.38378225  
0.43239643 0.90128739 0.02672781 18.93321539  
-0.00190145 -0.02873062 0.99958538 -0.07505929  
Axis -0.06400385 -0.01016498 0.99789788  
Axis point -21.87971538 95.67332351 0.00000000  
Rotation angle (degrees) 25.67354134  
Shift along axis -2.78807077  
  

> volume #1 transparency 0.5

> copy #2

Unknown command: copy #2  

> copy 1grl

Unknown command: copy 1grl  

> copy #2

Unknown command: copy #2  

> copy #2copy #2

Unknown command: copy #2copy #2  

> copy #2copy #2

Unknown command: copy #2copy #2  

> copy #2copy #2

Unknown command: copy #2copy #2  

> copy #2

Unknown command: copy #2  

> copy #2

Unknown command: copy #2  

> copy #2

Unknown command: copy #2  

> copy #2

Unknown command: copy #2  

> copy #2

Unknown command: copy #2  

> copy #2

Unknown command: copy #2  

> copy #2

Unknown command: copy #2  

> copy #2

Unknown command: copy #2  

> copy #2

Unknown command: copy #2  

> close all

> open D:\autodock_result\RESULT\冷冻电镜\emd_1080.map\emd_1080.map format ccp4

Opened emd_1080.map as #1, grid size 100,100,100, pixel 2.7, shown at level
1.68, step 1, values float32  

> open C:/Users/Yeqi/Downloads/1grl.pdb

1grl.pdb title:  
The crystal structure of the bacterial chaperonin groel At 2.8 angstroms [more
info...]  
  
Chain information for 1grl.pdb #2  
---  
Chain | Description | UniProt  
A B C D E F G | groel (HSP60 class) | CH60_ECOLI 2-548  
  

> fitmap #2 inMap #1

Fit molecule 1grl.pdb (#2) to map emd_1080.map (#1) using 29274 atoms  
average map value = 1.33, steps = 160  
shifted from previous position = 43.6  
rotated from previous position = 25.7 degrees  
atoms outside contour = 23229, contour level = 1.6751  
  
Position of 1grl.pdb (#2) relative to emd_1080.map (#1) coordinates:  
Matrix rotation and translation  
0.90168160 -0.43226797 -0.01070926 39.38378225  
0.43239643 0.90128739 0.02672781 18.93321539  
-0.00190145 -0.02873062 0.99958538 -0.07505929  
Axis -0.06400385 -0.01016498 0.99789788  
Axis point -21.87971538 95.67332351 0.00000000  
Rotation angle (degrees) 25.67354134  
Shift along axis -2.78807077  
  

> copy #2

Unknown command: copy #2  

> select #2

29274 atoms, 29001 bonds, 441 pseudobonds, 3626 residues, 2 models selected  

> copy

Unknown command: copy  

> copy select

Unknown command: copy select  

> open C:/Users/Yeqi/Downloads/1grl（2）.pdb

1grl（2）.pdb title:  
The crystal structure of the bacterial chaperonin groel At 2.8 angstroms [more
info...]  
  
Chain information for 1grl（2）.pdb #3  
---  
Chain | Description | UniProt  
A B C D E F G | groel (HSP60 class) | CH60_ECOLI 2-548  
  

> fitmap

Missing or invalid "atomsOrMap" argument: empty atom specifier  

> fitmap #3 inMap #1

Fit molecule 1grl（2）.pdb (#3) to map emd_1080.map (#1) using 29274 atoms  
average map value = 1.33, steps = 160  
shifted from previous position = 43.6  
rotated from previous position = 25.7 degrees  
atoms outside contour = 23229, contour level = 1.6751  
  
Position of 1grl（2）.pdb (#3) relative to emd_1080.map (#1) coordinates:  
Matrix rotation and translation  
0.90168160 -0.43226797 -0.01070926 39.38378225  
0.43239643 0.90128739 0.02672781 18.93321539  
-0.00190145 -0.02873062 0.99958538 -0.07505929  
Axis -0.06400385 -0.01016498 0.99789788  
Axis point -21.87971538 95.67332351 0.00000000  
Rotation angle (degrees) 25.67354134  
Shift along axis -2.78807077  
  

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> select clear

> select #2

29274 atoms, 29001 bonds, 441 pseudobonds, 3626 residues, 2 models selected  

> copy #2

Unknown command: copy #2  

> ui tool show "Selection Inspector"

Traceback (most recent call last):  
File "D:\ChimeraX 1.10.1\bin\Lib\site-packages\chimerax\toolbar\tool.py", line
230, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "D:\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\bundle.py", line 68, in run_provider  
from chmerax.segmentations.actions import run_toolbar_button  
ModuleNotFoundError: No module named 'chmerax'  
  
ModuleNotFoundError: No module named 'chmerax'  
  
File "D:\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\bundle.py", line 68, in run_provider  
from chmerax.segmentations.actions import run_toolbar_button  
  
See log for complete Python traceback.  
  

> select clear

> surface zone #2 nearAtoms #1/A:404-441

No surfaces specified  

> volume #1 transparency 0.5

Drag select of 1 emd_1080.map , 58548 atoms, 882 pseudobonds  

> select clear

> select #2

29274 atoms, 29001 bonds, 441 pseudobonds, 3626 residues, 2 models selected  
Drag select of 44 atoms  

> select ~sel & ##selected

58504 atoms, 57974 bonds, 882 pseudobonds, 7252 residues, 4 models selected  
Drag select of 1 emd_1080.map , 3256 atoms  

> select ~sel & ##selected

55292 atoms, 54982 bonds, 882 pseudobonds, 6990 residues, 4 models selected  

> select ~sel & ##selected

3256 atoms, 3020 bonds, 504 residues, 2 models selected  

> select ~sel & ##selected

55292 atoms, 54982 bonds, 882 pseudobonds, 6990 residues, 4 models selected  

> select ~sel & ##selected

3256 atoms, 3020 bonds, 504 residues, 2 models selected  

> select ~sel & ##selected

55292 atoms, 54982 bonds, 882 pseudobonds, 6990 residues, 4 models selected  
Traceback (most recent call last):  
File "D:\ChimeraX 1.10.1\bin\Lib\site-packages\chimerax\toolbar\tool.py", line
230, in callback  
bundle_info.run_provider(session, name, session.toolbar,
display_name=display_name)  
File "D:\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 397, in run_provider  
return api._api_caller.run_provider(api, session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1419, in run_provider  
return cls._get_func(api, "run_provider")(session, name, mgr, **kw)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "D:\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\bundle.py", line 68, in run_provider  
from chmerax.segmentations.actions import run_toolbar_button  
ModuleNotFoundError: No module named 'chmerax'  
  
ModuleNotFoundError: No module named 'chmerax'  
  
File "D:\ChimeraX 1.10.1\bin\Lib\site-
packages\chimerax\segmentations\bundle.py", line 68, in run_provider  
from chmerax.segmentations.actions import run_toolbar_button  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 561.17
OpenGL renderer: NVIDIA GeForce RTX 3060 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.4
Locale: zh_CN.cp936
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows

Manufacturer: LENOVO
Model: 82JQ
OS: Microsoft Windows 11 家庭中文版 (Build 26100)
Memory: 17,024,741,376
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 5800H with Radeon Graphics         
OSLanguage: zh-CN

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    babel: 2.17.0
    beautifulsoup4: 4.13.3
    blockdiag: 3.0.0
    blosc2: 3.6.1
    build: 1.2.2.post1
    certifi: 2025.7.14
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.2
    ChimeraX-AddCharge: 1.5.19
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.20.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.1.4
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.7
    ChimeraX-AtomicLibrary: 14.1.19
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.5.1
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.1
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.6.2
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.10.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.19
    ChimeraX-ModelPanel: 1.5.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.10
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.1.3
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.45.2
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.10
    contourpy: 1.3.2
    coverage: 7.10.0
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.12
    debugpy: 1.8.15
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.0
    filelock: 3.18.0
    fonttools: 4.59.0
    funcparserlib: 2.0.0a0
    glfw: 2.9.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2024.2.26
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.7
    jedi: 0.19.1
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.8
    line_profiler: 4.2.0
    lxml: 5.3.1
    lz4: 4.3.2
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib-inline: 0.1.7
    msgpack: 1.1.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.11.0
    numpy: 1.26.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.2.0
    OpenMM-CUDA-12: 8.2.0
    openvr: 1.26.701
    packaging: 24.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 25.0.1
    pkginfo: 1.11.1
    platformdirs: 4.3.8
    pluggy: 1.6.0
    prompt_toolkit: 3.0.51
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.9
    PyOpenGL-accelerate: 3.1.9
    pyopenxr: 1.1.4501
    pyparsing: 3.2.3
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.1
    PyQt6-Qt6: 6.8.2
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.2
    PyQt6_sip: 13.10.0
    pytest: 8.4.1
    pytest-cov: 6.2.1
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 310
    pyzmq: 27.0.0
    qtconsole: 5.5.2
    QtPy: 2.4.3
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 78.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.7
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.1.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.1
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.4
    tornado: 6.5.1
    traitlets: 5.14.3
    typing_extensions: 4.14.1
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.13
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1