ChimeraX bug report submission

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26200
ChimeraX Version: 1.11.dev202509240054 (2025-09-24 00:54:24 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation

Thread 0x00009354 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 331 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 629 in wait
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1399 in run
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1045 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\threading.py", line 1002 in _bootstrap

Current thread 0x00008b78 (most recent call first):
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init
  File "C:\Program Files\ChimeraX 1.11.dev202509240054\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.11.dev202509240054 (2025-09-24)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
> dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_1.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_1.pdb  
---  
warning | Ignored bad PDB record found on line 45  
.H_swV3.B99990003_fit.pdb  
  
Chain information for model_1.pdb #1  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
> dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_2.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_2.pdb  
---  
warning | Ignored bad PDB record found on line 45  
.o14fCH.B99990002_fit.pdb  
  
Chain information for model_2.pdb #2  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
> dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_3.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_3.pdb  
---  
warning | Ignored bad PDB record found on line 45  
.bsxMlE.B99990003_fit.pdb  
  
Chain information for model_3.pdb #3  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
> dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_4.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_4.pdb  
---  
warning | Ignored bad PDB record found on line 37  
.eOQu4O.B99990002_fit.pdb  
  
Chain information for model_4.pdb #4  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
> dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_5.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_5.pdb  
---  
warning | Ignored bad PDB record found on line 44  
.iGp6ge.B99990002_fit.pdb  
  
Chain information for model_5.pdb #5  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
> dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_6.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_6.pdb  
---  
warning | Ignored bad PDB record found on line 42  
.zhSuFb.B99990001_fit.pdb  
  
Chain information for model_6.pdb #6  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
> dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_7.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_7.pdb  
---  
warning | Ignored bad PDB record found on line 47  
.SXnyyw.B99990002_fit.pdb  
  
Chain information for model_7.pdb #7  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
> dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_8.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_8.pdb  
---  
warning | Ignored bad PDB record found on line 50  
.3H6wM7.B99990003_fit.pdb  
  
Chain information for model_8.pdb #8  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
> dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_9.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_9.pdb  
---  
warning | Ignored bad PDB record found on line 40  
.sPsc30.B99990003_fit.pdb  
  
Chain information for model_9.pdb #9  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> open C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
> dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_10.pdb

Summary of feedback from opening
C:/Users/Lenovo/Desktop/MUC4-EGF_HER2-DOCKİNG/DOCKING/CABS-
dock/EGF1-CORE/CABSdock_84c1b40365d2b25/CABSdock_84c1b40365d2b25/model_10.pdb  
---  
warning | Ignored bad PDB record found on line 34  
.vYLDJS.B99990002_fit.pdb  
  
Chain information for model_10.pdb #10  
---  
Chain | Description  
A | No description available  
C | No description available  
  

> hide #10 models

> show #10 models

> select #10/A:1-20

147 atoms, 151 bonds, 20 residues, 1 model selected  

> select #10/A:1-20

147 atoms, 151 bonds, 20 residues, 1 model selected  

> select #10/A:1-20

147 atoms, 151 bonds, 20 residues, 1 model selected  

> select #10/A:1-20

147 atoms, 151 bonds, 20 residues, 1 model selected  

> select add #10

4638 atoms, 4751 bonds, 601 residues, 1 model selected  

> select subtract #10

Nothing selected  

> select #9/A:1-20

147 atoms, 151 bonds, 20 residues, 1 model selected  

> select #9/A:1-20

147 atoms, 151 bonds, 20 residues, 1 model selected  

> select #1/C#2/C#3/C#4/C#5/C#6/C#7/C#8/C#9/C#10/C

44910 atoms, 46000 bonds, 5810 residues, 10 models selected  

> color sel medium blue

> select add #6

45057 atoms, 46151 bonds, 5830 residues, 10 models selected  

> select add #7

45204 atoms, 46302 bonds, 5850 residues, 10 models selected  

> select subtract #7

40566 atoms, 41551 bonds, 5249 residues, 9 models selected  

> select subtract #6

35928 atoms, 36800 bonds, 4648 residues, 8 models selected  

> select add #8

36075 atoms, 36951 bonds, 4668 residues, 8 models selected  

> select add #9

36222 atoms, 37102 bonds, 4688 residues, 8 models selected  

> select subtract #8

31584 atoms, 32351 bonds, 4087 residues, 7 models selected  

> select subtract #9

26946 atoms, 27600 bonds, 3486 residues, 6 models selected  

> select add #1

27093 atoms, 27751 bonds, 3506 residues, 6 models selected  

> select add #2

27240 atoms, 27902 bonds, 3526 residues, 6 models selected  

> select add #3

27387 atoms, 28053 bonds, 3546 residues, 6 models selected  

> select add #4

27534 atoms, 28204 bonds, 3566 residues, 6 models selected  

> select add #5

27681 atoms, 28355 bonds, 3586 residues, 6 models selected  

> select subtract #5

23043 atoms, 23604 bonds, 2985 residues, 5 models selected  

> select subtract #4

18405 atoms, 18853 bonds, 2384 residues, 4 models selected  

> select subtract #3

13767 atoms, 14102 bonds, 1783 residues, 3 models selected  

> select subtract #2

9129 atoms, 9351 bonds, 1182 residues, 2 models selected  

> select subtract #1

4491 atoms, 4600 bonds, 581 residues, 1 model selected  

> select add #10

4638 atoms, 4751 bonds, 601 residues, 1 model selected  

> select subtract #10

Nothing selected  

> ui mousemode right select

> select #6/A:14

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select #6/A:14

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select clear

> ui mousemode right "translate selected models"

> ui mousemode right "move picked models"

> view matrix models #3,1,0,0,-0.18911,0,1,0,0.14145,0,0,1,0.11499

> hide #1 models

> show #1 models

> hide #2 models

> show #2 models

> hide #2 models

> hide #3 models

> show #3 models

> hide #3 models

> show #3 models

> hide #4 models

> show #4 models

> hide #5 models

> show #5 models

> hide #5 models

> show #5 models

> hide #6 models

> show #6 models

> hide #6 models

> show #6 models

> hide #6 models

> hide #7 models

> show #7 models

> hide #7 models

> show #7 models

> hide #8 models

> show #8 models

> hide #8 models

> hide #9 models

> show #9 models

> hide #9 models

> hide #10 models

> show #10 models

> hide #10 models

> select #1/C

4491 atoms, 4600 bonds, 581 residues, 1 model selected  

> ui tool show "Show Sequence Viewer"

> select add #1

4638 atoms, 4751 bonds, 601 residues, 1 model selected  

> select subtract #1

Nothing selected  

> ui tool show "Show Sequence Viewer"

> sequence chain #1/A #2/A #3/A #4/A #5/A #6/A #7/A #8/A #9/A #10/A

Alignment identifier is 1  

> select #1/A:1 #2/A:1 #3/A:1 #4/A:1 #5/A:1 #6/A:1 #7/A:1 #8/A:1 #9/A:1
> #10/A:1

90 atoms, 80 bonds, 10 residues, 10 models selected  

> select #1/A #2/A #3/A #4/A #5/A #6/A #7/A #8/A #9/A #10/A

1470 atoms, 1510 bonds, 200 residues, 10 models selected  
1 [ID: 1] region 10 chains [1-20] RMSD: 41.041  
  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.11.dev202509240054 (2025-09-24)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 555.99
OpenGL renderer: NVIDIA GeForce GTX 1650/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.9
Locale: en_US.cp1254
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: windows

Manufacturer: LENOVO
Model: 81LK
OS: Microsoft Windows 11 Home (Build 26200)
Memory: 17,044,721,664
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i5-9300H CPU @ 2.40GHz
OSLanguage: tr-TR

Installed Packages:
    alabaster: 1.0.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    babel: 2.17.0
    beautifulsoup4: 4.13.5
    blockdiag: 3.0.0
    blosc2: 3.8.0
    build: 1.3.0
    certifi: 2025.8.3
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.3
    ChimeraX-AddCharge: 1.5.20
    ChimeraX-AddH: 2.2.7
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 3.0.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Aniso: 1.3.2
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60.17
    ChimeraX-AtomicLibrary: 14.2
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.1
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.6.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3.0
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.11.dev202509240054
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.3
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.4
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.7.1
    ChimeraX-Label: 1.2
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.2
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.17.1
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-Minimize: 1.2
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.22
    ChimeraX-ModelPanel: 1.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0.1
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.15.1
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.11
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.5
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.3
    ChimeraX-ProfileGrids: 1.4
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.5
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.2
    ChimeraX-Scenes: 0.2.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.2
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.48.3
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDock: 1.4.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.3
    comtypes: 1.4.11
    contourpy: 1.3.3
    coverage: 7.10.7
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.1.4
    debugpy: 1.8.17
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.1
    filelock: 3.19.1
    fonttools: 4.60.0
    funcparserlib: 2.0.0a0
    glfw: 2.10.0
    grako: 3.16.5
    h5py: 3.14.0
    html2text: 2025.4.15
    idna: 3.10
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.1.0
    ipykernel: 6.30.1
    ipython: 9.5.0
    ipython_pygments_lexers: 1.1.1
    ipywidgets: 8.1.7
    jedi: 0.19.2
    Jinja2: 3.1.6
    jupyter_client: 8.6.3
    jupyter_core: 5.8.1
    jupyterlab_widgets: 3.0.15
    kiwisolver: 1.4.9
    line_profiler: 5.0.0
    lxml: 6.0.2
    lz4: 4.3.2
    Markdown: 3.8.2
    MarkupSafe: 3.0.2
    matplotlib: 3.10.5
    matplotlib-inline: 0.1.7
    msgpack: 1.1.1
    narwhals: 2.12.0
    ndindex: 1.10.0
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.12.1
    numpy: 2.3.5
    numpy: 1.26.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.2.0
    OpenMM-CUDA-12: 8.2.0
    openvr: 1.26.701
    packaging: 25.0
    ParmEd: 4.2.2
    parso: 0.8.5
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 11.3.0
    pip: 25.2
    pkginfo: 1.12.1.2
    platformdirs: 4.4.0
    plotly: 6.3.1
    pluggy: 1.6.0
    prompt_toolkit: 3.0.52
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pybind11: 3.0.1
    pycollada: 0.8
    pydicom: 2.4.4
    Pygments: 2.18.0
    pyKVFinder: 0.8.3
    pynmrstar: 3.3.6
    pynrrd: 1.0.0
    PyOpenGL: 3.1.10
    PyOpenGL-accelerate: 3.1.10
    pyopenxr: 1.1.4501
    pyparsing: 3.2.5
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.9.1
    PyQt6-Qt6: 6.9.2
    PyQt6-WebEngine-commercial: 6.9.0
    PyQt6-WebEngine-Qt6: 6.9.2
    PyQt6_sip: 13.10.2
    pytest: 8.4.2
    pytest-cov: 7.0.0
    python-dateutil: 2.9.0.post0
    pytz: 2025.2
    pywin32: 311
    pyzmq: 27.1.0
    qtconsole: 5.7.0
    QtPy: 2.4.3
    qtshim: 1.2
    RandomWords: 0.4.0
    requests: 2.32.5
    roman-numerals-py: 3.1.0
    scipy: 1.14.0
    setuptools: 80.9.0
    sfftk-rw: 0.8.1
    six: 1.17.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.8
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.2.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.7.6
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.5
    tomlkit: 0.13.3
    tornado: 6.5.2
    traitlets: 5.14.3
    typing_extensions: 4.15.0
    tzdata: 2025.2
    urllib3: 2.5.0
    wcwidth: 0.2.14
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.14
    WMI: 1.5.1