![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 hours ago
Last modified 73 minutes ago
#19823 assigned defect
Crash in QDockWidget::event() in Qt 6.9.2
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-26.2-arm64-arm-64bit
ChimeraX Version: 1.11 (2025-12-17 06:45:39 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x000000017d08f000 (most recent call first):
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 331 in wait
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 629 in wait
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1399 in run
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Current thread 0x00000001fa44ec40 (most recent call first):
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 414 in event_loop
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1064 in init
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1229 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.surface._surface, chimerax.pdb_lib._load_libs, psutil._psutil_osx, psutil._psutil_posix, PIL._imaging, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, PIL._imagingmath (total: 56)
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REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
UNUSED SPACE AT START
--->
__TEXT 100d54000-100d58000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.11.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000008","rawCodes":[1,8],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000008"},
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"vmregioninfo" : "0x8 is not in any region. Bytes before following region: 4308942840
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
UNUSED SPACE AT START
--->
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===== Log before crash start =====
UCSF ChimeraX version: 1.11 (2025-12-17)
© 2016-2025 Regents of the University of California. All rights reserved.
> open "/Users/lynnehowell/SickKids Research Dropbox/Howell Lab's shared
> workspace/Grants/CIHR 2026 Alginate/Application before
> review/Proposal/Figs/MucR_dimer.cxs"
Log from Tue Feb 3 16:38:24 2026UCSF ChimeraX version: 1.11 (2025-12-17)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/lynnehowell/Downloads/AF-Q9I310-F1-model_v6.pdb
AF-Q9I310-F1-model_v6.pdb title:
Alphafold monomer V2.0 prediction for bifunctional diguanylate cyclase/cyclic
di-GMP phosphodiesterase mucr (Q9I310) [more info...]
Chain information for AF-Q9I310-F1-model_v6.pdb #1
---
Chain | Description | UniProt
A | bifunctional diguanylate cyclase/cyclic di-GMP phosphodiesterase mucr | MUCR_PSEAE 1-685
Computing secondary structure
> color bypolymer
[Repeated 1 time(s)]
> color #1 #e2e1a9ff
> set bgColor white
> color #1 silver
> color #1 #011993ff
> color #1 #929292ff
> show surfaces
> ui tool show "Side View"
> open /Users/lynnehowell/Downloads/AF-Q9I310-F1-model_v6.pdb
AF-Q9I310-F1-model_v6.pdb title:
Alphafold monomer V2.0 prediction for bifunctional diguanylate cyclase/cyclic
di-GMP phosphodiesterase mucr (Q9I310) [more info...]
Chain information for AF-Q9I310-F1-model_v6.pdb #2
---
Chain | Description | UniProt
A | bifunctional diguanylate cyclase/cyclic di-GMP phosphodiesterase mucr | MUCR_PSEAE 1-685
Computing secondary structure
> view
> open 3BRE fromDatabase pdb format mmcif
Summary of feedback from opening 3BRE fetched from pdb
---
note | Fetching compressed mmCIF 3bre from http://files.rcsb.org/download/3bre.cif
3bre title:
Crystal Structure of P.aeruginosa PA3702 [more info...]
Chain information for 3bre #3
---
Chain | Description | UniProt
A B | Probable two-component response regulator | Q9HXT9_PSEAE 1-347
Non-standard residues in 3bre #3
---
C2E —
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
(c-di-GMP; Cyclic diguanosine monophosphate)
MG — magnesium ion
3bre mmCIF Assemblies
---
1| software_defined_assembly
2| author_defined_assembly
> ui tool show Matchmaker
> matchmaker #!1 to #3
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3bre, chain B (#3) with AF-Q9I310-F1-model_v6.pdb, chain A (#1),
sequence alignment score = 425.7
RMSD between 134 pruned atom pairs is 0.997 angstroms; (across all 282 pairs:
16.024)
> hide surfaces
> delete #3
> open 2V0N fromDatabase pdb format mmcif
Summary of feedback from opening 2V0N fetched from pdb
---
notes | Fetching compressed mmCIF 2v0n from http://files.rcsb.org/download/2v0n.cif
Fetching CCD BEF from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/F/BEF/BEF.cif
Fetching CCD GAV from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/V/GAV/GAV.cif
2v0n title:
Activated response regulator pled In complex with C-digmp and GTP- α-S [more
info...]
Chain information for 2v0n #3
---
Chain | Description | UniProt
A B | RESPONSE REGULATOR PLED | PLED_CAUCR 2-454
Non-standard residues in 2v0n #3
---
BEF — beryllium trifluoride ion
C2E —
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
(c-di-GMP; Cyclic diguanosine monophosphate)
CL — chloride ion
GAV — guanosine-5'-RP-α-thio-triphosphate
MG — magnesium ion
SO4 — sulfate ion
> delete #3
> open 2V0N fromDatabase pdb format mmcif
2v0n title:
Activated response regulator pled In complex with C-digmp and GTP- α-S [more
info...]
Chain information for 2v0n #3
---
Chain | Description | UniProt
A B | RESPONSE REGULATOR PLED | PLED_CAUCR 2-454
Non-standard residues in 2v0n #3
---
BEF — beryllium trifluoride ion
C2E —
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
(c-di-GMP; Cyclic diguanosine monophosphate)
CL — chloride ion
GAV — guanosine-5'-RP-α-thio-triphosphate
MG — magnesium ion
SO4 — sulfate ion
> ui tool show Matchmaker
> matchmaker #!1 to #3
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 2v0n, chain B (#3) with AF-Q9I310-F1-model_v6.pdb, chain A (#1),
sequence alignment score = 435
RMSD between 132 pruned atom pairs is 0.827 angstroms; (across all 389 pairs:
48.754)
> delete #3
> select #2/A:225
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
388 atoms, 389 bonds, 52 residues, 1 model selected
> select up
5230 atoms, 5325 bonds, 685 residues, 1 model selected
> select clear
> ui tool show "Similar Structures"
You must press the similar structures Search button before you can open
matching structures.
> foldseek #1/A
Found 206 similar structures to AF-Q9I310-F1-model_v6.pdb #1/A in pdb database
using foldseek, name fs1
> open 4rnh
Summary of feedback from opening 4rnh fetched from pdb
---
note | Fetching compressed mmCIF 4rnh from http://files.rcsb.org/download/4rnh.cif
4rnh title:
PaMorA tandem diguanylate cyclase - phosphodiesterase, c-di-GMP complex [more
info...]
Chain information for 4rnh #3
---
Chain | Description | UniProt
A | Motility regulator | Q9HVI8_PSEAE 978-1409
Non-standard residues in 4rnh #3
---
C2E —
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
(c-di-GMP; Cyclic diguanosine monophosphate)
MG — magnesium ion
4rnh mmCIF Assemblies
---
1| author_and_software_defined_assembly
20 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Deleted 1 N-terminal residues, 26 non-polymer residues more than 3.0 Angstroms
away.
Alignment of 4rnh chain A to query has RMSD 0.857 using 224 of 417 paired
residues within cutoff distance 2.0
> open 5m3c
Summary of feedback from opening 5m3c fetched from pdb
---
note | Fetching compressed mmCIF 5m3c from http://files.rcsb.org/download/5m3c.cif
5m3c title:
Structure of the hybrid domain (GGDEF-EAL) of PA0575 from Pseudomonas
aeruginosa PAO1 at 2.8 Ang. with GTP and Ca2+ bound to the active site of the
GGDEF domain [more info...]
Chain information for 5m3c #4
---
Chain | Description | UniProt
A B | Diguanylate cyclase | A0A140SCF9_PSEAI 809-1245
Non-standard residues in 5m3c #4
---
CA — calcium ion
GTP — guanosine-5'-triphosphate
Deleted 1 extra chains, 4 C-terminal residues, 1 N-terminal residues, 14 non-
polymer residues more than 3.0 Angstroms away.
Alignment of 5m3c chain B to query has RMSD 0.97 using 208 of 415 paired
residues within cutoff distance 2.0
> open 5m3c
5m3c title:
Structure of the hybrid domain (GGDEF-EAL) of PA0575 from Pseudomonas
aeruginosa PAO1 at 2.8 Ang. with GTP and Ca2+ bound to the active site of the
GGDEF domain [more info...]
Chain information for 5m3c #5
---
Chain | Description | UniProt
A B | Diguanylate cyclase | A0A140SCF9_PSEAI 809-1245
Non-standard residues in 5m3c #5
---
CA — calcium ion
GTP — guanosine-5'-triphosphate
Deleted 1 extra chains, 5 C-terminal residues, 1 N-terminal residues, 12 non-
polymer residues more than 3.0 Angstroms away.
Alignment of 5m3c chain A to query has RMSD 0.902 using 190 of 408 paired
residues within cutoff distance 2.0
> open 5m3c fromDatabase pdb format mmcif
5m3c title:
Structure of the hybrid domain (GGDEF-EAL) of PA0575 from Pseudomonas
aeruginosa PAO1 at 2.8 Ang. with GTP and Ca2+ bound to the active site of the
GGDEF domain [more info...]
Chain information for 5m3c #6
---
Chain | Description | UniProt
A B | Diguanylate cyclase | A0A140SCF9_PSEAI 809-1245
Non-standard residues in 5m3c #6
---
CA — calcium ion
GTP — guanosine-5'-triphosphate
> hide #!5 models
> hide #!4 models
> color #6 #0096ffff
> color #6 #76d6ffff
> color #6 #00fa92ff
> delete #4
[Repeated 1 time(s)]
> delete #3
> ui tool show Matchmaker
> matchmaker #!1 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 5m3c, chain B (#6) with AF-Q9I310-F1-model_v6.pdb, chain A (#1),
sequence alignment score = 1298.5
RMSD between 213 pruned atom pairs is 0.969 angstroms; (across all 421 pairs:
9.126)
> ui tool show Matchmaker
No reference and/or match structure/chain chosen
> ui tool show Matchmaker
> matchmaker #2/A to #6/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 5m3c, chain A (#6) with AF-Q9I310-F1-model_v6.pdb, chain A (#2),
sequence alignment score = 1249.3
RMSD between 190 pruned atom pairs is 0.888 angstroms; (across all 415 pairs:
8.992)
> hide #2 models
> show #2 models
> hide #!6 models
> color #2#!1 bypolymer
> hide #2 models
> show #2 models
> ui tool show "Color Actions"
> color purple
> color cornflower blue
> color hot pink
> color dark magenta
> color purple
> color medium violet red
> color orchid
> color pale violet red
> color light pink
> show #2#!1 surfaces
> save "/Users/lynnehowell/SickKids Research Dropbox/Howell Lab's shared
> workspace/Grants/CIHR 2026 Alginate/Application before
> review/Proposal/Figs/MucR_dimer.jpg" width 827 height 744 supersample 3
> volume projectionMode 2d-xyz
No volumes specified
> graphics silhouettes true
> lighting shadows true
> lighting shadows false
> graphics silhouettes false
> graphics silhouettes true
> ui tool show "Side View"
> save "/Users/lynnehowell/SickKids Research Dropbox/Howell Lab's shared
> workspace/Grants/CIHR 2026 Alginate/Application before
> review/Proposal/Figs/MucR_dimer.cxs"
——— End of log from Tue Feb 3 16:38:24 2026 ———
> view name session-start
opened ChimeraX session
> hide #!1-2 surfaces
> hide #!2 models
> rainbow #!1
> open 6hq7
Summary of feedback from opening 6hq7 fetched from pdb
---
notes | Fetching compressed mmCIF 6hq7 from http://files.rcsb.org/download/6hq7.cif
Fetching CCD PCG from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/PCG/PCG.cif
6hq7 title:
Structure of EAL Enzyme Bd1971 - cGMP bound form [more info...]
Chain information for 6hq7 #3
---
Chain | Description | UniProt
A B | EAL Enzyme Bd1971 | Q6MLN6_BDEBA 6-400
Non-standard residues in 6hq7 #3
---
MG — magnesium ion
PCG — cyclic guanosine monophosphate
101 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
5972 atoms have anisotropic B-factors. Depict anisotropic information with
Thermal Ellipsoids [start tool...] or the aniso command.
Deleted 1 extra chains, 28 N-terminal residues, 2 non-polymer residues more
than 3.0 Angstroms away.
Alignment of 6hq7 chain B to query has RMSD 0.791 using 180 of 321 paired
residues within cutoff distance 2.0
> hide #!3 models
> open 4iob
Summary of feedback from opening 4iob fetched from pdb
---
notes | Fetching compressed mmCIF 4iob from http://files.rcsb.org/download/4iob.cif
Fetching CCD TBU from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/U/TBU/TBU.cif
4iob title:
Crystal structure of the GGDEF domain of PA1120 (YfiN or TpbB) from
Pseudomonas aeruginosa at 2.7 Ang. [more info...]
Chain information for 4iob #4
---
Chain | Description | UniProt
A | Diguanylate cyclase TpbB | Q9I4L5_PSEAE 254-414
Non-standard residues in 4iob #4
---
GOL — glycerol (glycerin; propane-1,2,3-triol)
TBU — tertiary-butyl alcohol (2-methyl-2-propanol)
5 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Deleted 2 C-terminal residues, 1 N-terminal residues, 1 non-polymer residues
more than 3.0 Angstroms away.
Alignment of 4iob chain A to query has RMSD 0.784 using 153 of 156 paired
residues within cutoff distance 2.0
> color #4#!1 bypolymer
> rainbow #4#!1
Desktop color scheme is dark
Desktop color scheme is light
> show #!2 models
> close session
> open "/Users/lynnehowell/SickKids Research Dropbox/Howell Lab's shared
> workspace/Grants/CIHR 2026 Alginate/Alginate background material/activation-
> RP5.cxs"
> view name session-start
opened ChimeraX session
> show #!1 models
> hide #!1 models
> hide #!9 surfaces
> show #!9 surfaces
> ui tool show "Side View"
> show #!1 models
> hide #!9 models
> hide #!1 surfaces
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #3 models
> hide #!1 models
> show #2 models
> hide #2 models
> show #4 models
> hide #3 models
> hide #4 models
> show #!1 models
> save /Users/lynnehowell/ALg8_activation.cxs
> select clear
> select #1/A:461
11 atoms, 10 bonds, 1 residue, 1 model selected
> select up
151 atoms, 153 bonds, 18 residues, 2 models selected
> color (#!1 & sel) red
> select clear
> select #1/A:448
8 atoms, 7 bonds, 1 residue, 1 model selected
> select clear
Drag select of 3 residues
> select clear
> select #1/A:463
8 atoms, 7 bonds, 1 residue, 1 model selected
> ui tool show "Show Sequence Viewer"
> sequence chain #1/A
Alignment identifier is 1/A
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.11 (2025-12-17)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M3 Max
OpenGL vendor: Apple
Python: 3.11.9
Locale: en_US.UTF-8
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,10
Model Number: MRX83LL/A
Chip: Apple M3 Max
Total Number of Cores: 14 (10 performance and 4 efficiency)
Memory: 36 GB
System Firmware Version: 13822.61.10
OS Loader Version: 13822.61.10
Software:
System Software Overview:
System Version: macOS 26.2 (25C56)
Kernel Version: Darwin 25.2.0
Time since boot: 2 days, 18 hours, 2 minutes
Graphics/Displays:
Apple M3 Max:
Chipset Model: Apple M3 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 30
Vendor: Apple (0x106b)
Metal Support: Metal 4
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
aiohappyeyeballs: 2.6.1
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.12.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.1
attrs: 25.4.0
babel: 2.17.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 3.12.2
build: 1.3.0
certifi: 2025.7.14
cftime: 1.6.5
charset-normalizer: 3.4.4
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.1.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.61.4
ChimeraX-AtomicLibrary: 14.2.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.0
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.11
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.7.3
ChimeraX-Label: 1.2
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.2
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.1.0
ChimeraX-MDcrds: 2.17.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.2
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.22
ChimeraX-ModelPanel: 1.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.2
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.11
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.4.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.5
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.10
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.3
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.49.1
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.5.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.3.1
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.13.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.1.4
debugpy: 1.8.19
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.61.1
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.15.1
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.11
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.3.0
ipykernel: 6.30.1
ipython: 9.5.0
ipython_pygments_lexers: 1.1.1
ipywidgets: 8.1.8
jedi: 0.19.2
Jinja2: 3.1.6
joblib: 1.5.0
jsonschema: 4.25.1
jsonschema-specifications: 2025.9.1
jupyter_client: 8.6.3
jupyter_core: 5.9.1
jupyterlab_widgets: 3.0.16
kiwisolver: 1.4.9
line_profiler: 5.0.0
llvmlite: 0.44.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.1
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.0
narwhals: 1.43.1
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numba: 0.61.2
numexpr: 2.14.1
numpy: 2.2.6
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.5
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.5.1
plotly: 6.0.1
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.4.1
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.12.5
pydantic-settings: 2.12.0
pydantic_core: 2.41.5
pydicom: 2.4.4
Pygments: 2.18.0
pyKVFinder: 0.8.1
pynmrstar: 3.3.6
pynndescent: 0.5.13
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.2.5
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.9.1
PyQt6-Qt6: 6.9.2
PyQt6-WebEngine-commercial: 6.9.0
PyQt6-WebEngine-Qt6: 6.9.2
PyQt6_sip: 13.10.2
pytest: 9.0.2
pytest-cov: 7.0.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.1
python-multipart: 0.0.21
pytz: 2025.2
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.0.0
roman-numerals-py: 4.0.0
rpds-py: 0.30.0
scikit-learn: 1.6.1
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.2.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.0.4
stack-data: 0.6.3
starlette: 0.50.0
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 1.5.1
threadpoolctl: 3.6.0
tifffile: 2025.3.13
tinyarray: 1.2.5
tomlkit: 0.13.2
tornado: 6.5.4
tqdm: 4.67.1
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
tzdata: 2025.3
umap-learn: 0.5.7
urllib3: 2.6.2
uvicorn: 0.38.0
wcwidth: 0.2.14
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.15
yarl: 1.22.0
Change History (1)
comment:1 by , 73 minutes ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in QDockWidget::event() in Qt 6.9.2 |
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Reported by Lynne