![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 hours ago
#19853 new defect
ChimeraX bug report submission
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Unassigned | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | ||
| Project: |
Description
The following bug report has been submitted:
Platform: macOS-26.1-arm64-arm-64bit
ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
"uptime" : 440000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 23165,
"deployVersion" : 210,
"modelCode" : "Mac14,13",
"coalitionID" : 14063,
"osVersion" : {
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"build" : "25B78",
"releaseType" : "User"
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"captureTime" : "2026-02-15 15:37:10.8259 +0100",
"codeSigningMonitor" : 2,
"incident" : "0389F0A4-2577-44B2-BF11-8565F405F4D7",
"pid" : 17878,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2026-02-13 10:28:47.3310 +0100",
"procStartAbsTime" : 5991794187608,
"procExitAbsTime" : 10583076899184,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.11.1.app\/Contents\/MacOS\/ChimeraX",
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"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "9F5B7419-8627-344B-9EF0-19DBB17551C8",
"appleIntelligenceStatus" : {"state":"unavailable","reasons":["selectedLanguageDoesNotMatchSelectedSiriLanguageInfo(system: en-GB, siri: de)","countryLocationIneligible","selectedLanguageDoesNotMatchSelectedSiriLanguage"]},
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"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
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"sleepWakeUUID" : "9522AB0D-167D-488B-93BB-D3B496524765",
"sip" : "enabled",
"vmRegionInfo" : "0x8 is not in any region. Bytes before following region: 4311171064
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
UNUSED SPACE AT START
--->
__TEXT 100f74000-100f78000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.11.1.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000008","rawCodes":[1,8],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000008"},
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"vmregioninfo" : "0x8 is not in any region. Bytes before following region: 4311171064
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
UNUSED SPACE AT START
--->
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CoreImage 48K 3
CoreServices 832K 3
CoreUI image data 2416K 32
Foundation 48K 2
Kernel Alloc Once 144K 4
MALLOC 121.4G 11708
MALLOC guard page 3392K 4
Mach message 64K 3
OpenGL GLSL 256K 3
PROTECTED_MEMORY 16K 1
STACK GUARD 1008K 63
Stack 438.6M 64
Stack Guard 56.0M 1
VM_ALLOCATE 20.8G 10985
__AUTH 5917K 656
__AUTH_CONST 90.0M 1046
__CTF 824 1
__DATA 38.3M 1145
__DATA_CONST 59.5M 1190
__DATA_DIRTY 8874K 905
__FONT_DATA 2352 1
__GLSLBUILTINS 5174K 1
__INFO_FILTER 8 1
__LINKEDIT 623.8M 140
__OBJC_RO 78.3M 1
__OBJC_RW 2567K 1
__TEXT 1.5G 1212
__TPRO_CONST 128K 2
dyld private memory 1584K 14
mapped file 678.7M 97
page table in kernel 77.4M 1
shared memory 5008K 24
=========== ======= =======
TOTAL 145.8G 29940
",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "6215853129557be495ed56b1327219f8893bdaba",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "6410af69ed1e1e7ab93ed169",
"factorPackIds" : [
],
"deploymentId" : 240000011
},
{
"rolloutId" : "5ffde50ce2aacd000d47a95f",
"factorPackIds" : [
],
"deploymentId" : 240000509
}
],
"experiments" : [
]
}
}
Log:
> graphics silhouettes true
> lighting soft
> set bgColor white
> windowsize 1600 1200
> colordef crown1 #7ed5dc
Color 'crown1' is opaque: rgb(49.4%, 83.5%, 86.3%) hex: #7ed5dc
> colordef crown2 #7ea6dc
Color 'crown2' is opaque: rgb(49.4%, 65.1%, 86.3%) hex: #7ea6dc
> colordef crown3 #7edcb4
Color 'crown3' is opaque: rgb(49.4%, 86.3%, 70.6%) hex: #7edcb4
> colordef leverarm #93b0da
Color 'leverarm' is opaque: rgb(57.6%, 69%, 85.5%) hex: #93b0da
> colordef bh #55667e
Color 'bh' is opaque: rgb(33.3%, 40%, 49.4%) hex: #55667e
> colordef fh #ace2ff
Color 'fh' is opaque: rgb(67.5%, 88.6%, 100%) hex: #ace2ff
> colordef thickcore #707EC1
Color 'thickcore' is opaque: rgb(43.9%, 49.4%, 75.7%) hex: #707ec1
> colordef sr11x #dc7ea6
Color 'sr11x' is opaque: rgb(86.3%, 49.4%, 65.1%) hex: #dc7ea6
> colordef titinalpha #d95d87
Color 'titinalpha' is opaque: rgb(85.1%, 36.5%, 52.9%) hex: #d95d87
> colordef titinbeta #dc7ea6
Color 'titinbeta' is opaque: rgb(86.3%, 49.4%, 65.1%) hex: #dc7ea6
> colordef tk #844b63
Color 'tk' is opaque: rgb(51.8%, 29.4%, 38.8%) hex: #844b63
> colordef m1-9 #eab1c9
Color 'm1-9' is opaque: rgb(91.8%, 69.4%, 78.8%) hex: #eab1c9
> colordef ck-mm #546845
Color 'ck-mm' is opaque: rgb(32.9%, 40.8%, 27.1%) hex: #546845
> colordef m4 #a8d18a
Color 'm4' is opaque: rgb(65.9%, 82%, 54.1%) hex: #a8d18a
> colordef mybpc #dec98f
Color 'mybpc' is opaque: rgb(87.1%, 78.8%, 56.1%) hex: #dec98f
> colordef actin #a8d18a
Color 'actin' is opaque: rgb(65.9%, 82%, 54.1%) hex: #a8d18a
> colordef tropomyosina #d1a8a8
Color 'tropomyosina' is opaque: rgb(82%, 65.9%, 65.9%) hex: #d1a8a8
> colordef tropomyosinb #d1a8bd
Color 'tropomyosinb' is opaque: rgb(82%, 65.9%, 74.1%) hex: #d1a8bd
> colordef troponin #a8a8d1
Color 'troponin' is opaque: rgb(65.9%, 65.9%, 82%) hex: #a8a8d1
> buttonpanel Lights&Colors rows 7
> buttonpanel Lights&Colors add MyLights command "lighting soft intensity 0.1
> direction 0.577,-0.577,-0.577 color 100,100,100 fillIntensity 0.5
> fillDirection -0.81,-1,1 fillColor 100,100,100 ambientIntensity 1.4
> ambientColor 100,100,100 shadow 1 qualityOfShadows finer depthBias 0.01
> multiShadow 64 msMapSize 2000 msDepthBias 0.004 moveWithCamera 1"
> buttonpanel Lights&Colors add MySilh command "graphics silhouettes 1
> depthJump 0.0025 width 2.5 color 0,0,0"
> buttonpanel Lights&Colors add DefSilh command "graphics silhouettes 1
> depthJump 0.03 width 1 color 0,0,0"
> buttonpanel Lights&Colors add X_Col command "color #1 #7ed5dc ; color #2
> #7ea6dc ; color #3 #7edcb4 ; color #4 #dc7ea6 ; color #5 #dec98f ; color #6
> #A8D18A ; color #7 #d1a8a8 ; color #8 #d1a8bd ; color #9 #A8A8D1"
> buttonpanel Lights&Colors add 1.X_Col command "color #1.1 #7ed5dc ; color
> #1.2 #7ea6dc ; color #1.3 #7edcb4 ; color #1.4 #dc7ea6 ; color #1.5 #dec98f
> ; color #1.6 #A8D18A ; color #1.7 #d1a8a8 ; color #1.8 #d1a8bd ; color #1.9
> #A8A8D1"
> buttonpanel Lights&Colors add X.X_Col command "color #1 #7ed5dc ; color #1.1
> #7ed5dc ; color #1.2 #7ea6dc ; color #1.3 #7edcb4 ; color #1.4 #dc7ea6 ;
> color #1.5 #dec98f ; color #1.6 #A8D18A ; color #1.7 #d1a8a8 ; color #1.8
> #d1a8bd ; color #1.9 #A8A8D1 ; color #2 #7ea6dc ; color #2.1 #7ea6dc ; color
> #2.2 #7edcb4 ; color #2.3 #dc7ea6 ; color #2.4 #dec98f ; color #2.5 #A8D18A
> ; color #2.6 #d1a8a8 ; color #2.7 #d1a8bd ; color #2.8 #A8A8D1 ; color #2.9
> #7ed5dc ; color #3 #7edcb4 ; color #3.1 #7edcb4 ; color #3.2 #dc7ea6 ; color
> #3.3 #dec98f ; color #3.4 #A8D18A ; color #3.5 #d1a8a8 ; color #3.6 #d1a8bd
> ; color #3.7 #A8A8D1 ; color #3.8 #7ed5dc ; color #3.9 #7ea6dc ; color #4
> #dc7ea6 ; color #4.1 #dc7ea6 ; color #1.2 #dec98f ; color #1.3 #A8D18A ;
> color #1.4 #d1a8a8 ; color #1.5 #d1a8bd ; color #1.6 #A8A8D1 ; color #1.7
> #7ed5dc ; color #1.8 #7ea6dc ; color #1.9 #7edcb4 ; color #5 #dec98f ; color
> #5.1 #dec98f ; color #5.2 #A8D18A ; color #5.3 #d1a8a8 ; color #5.4 #d1a8bd
> ; color #5.5 #A8A8D1 ; color #5.6 #7ed5dc ; color #5.7 #7ea6dc ; color #5.8
> #7edcb4 ; color #5.9 #dc7ea6 ; color #6 #A8D18A ; color #6.1 #A8D18A ; color
> #6.2 #d1a8a8 ; color #6.3 #d1a8bd ; color #6.4 #A8A8D1 ; color #6.5 #7ed5dc
> ; color #6.6 #7ea6dc ; color #6.7 #7edcb4 ; color #6.8 #dc7ea6 ; color #6.9
> #dec98f ; color #7 #d1a8a8 ; color #7.1 #d1a8a8 ; color #7.2 #d1a8bd ; color
> #7.3 #A8A8D1 ; color #7.4 #7ed5dc ; color #7.5 #7ea6dc ; color #7.6 #7edcb4
> ; color #7.7 #dc7ea6 ; color #7.8 #dec98f ; color #7.9 #A8D18A ; color #8
> #d1a8bd ; color #8.1 #d1a8bd ; color #8.2 #A8A8D1 ; color #8.3 #7ed5dc ;
> color #8.4 #7ea6dc ; color #8.5 #7edcb4 ; color #8.6 #dc7ea6 ; color #8.7
> #dec98f ; color #8.8 #A8D18A ; color #8.9 #d1a8a8 ; color #9 #A8A8D1 ; color
> #9.1 #A8A8D1 ; color #9.2 #7ed5dc ; color #9.3 #7ea6dc ; color #9.4 #7edcb4
> ; color #9.5 #dc7ea6 ; color #9.6 #dec98f ; color #9.7 #A8D18A ; color #9.8
> #d1a8a8 ; color #9.9 #d1a8bd "
> buttonpanel Lights&Colors add Class_Col command "color #1.1 #7ed5dc ; color
> #1.2 #dc7ea6 ; color #1.3 #dec98f ; color #1.4 #7ea6dc ; color #1.5 #A8D18A
> ; color #1.6 #d1a8a8 ; color #1.7 #d1a8bd ; color #1.8 #7edcb4 ; color #1.9
> #A8A8D1 ; color #2.1 #7ed5dc ; color #2.2 #dc7ea6 ; color #2.3 #dec98f ;
> color #2.4 #7ea6dc ; color #2.5 #A8D18A ; color #2.6 #d1a8a8 ; color #2.7
> #d1a8bd ; color #2.8 #7edcb4 ; color #2.9 #A8A8D1 ; color #3.1 #7ed5dc ;
> color #3.2 #dc7ea6 ; color #3.3 #dec98f ; color #3.4 #7ea6dc ; color #3.5
> #A8D18A ; color #3.6 #d1a8a8 ; color #3.7 #d1a8bd ; color #3.8 #7edcb4 ;
> color #3.9 #A8A8D1 ; color #4.1 #7ed5dc ; color #1.2 #dc7ea6 ; color #1.3
> #dec98f ; color #1.4 #7ea6dc ; color #1.5 #A8D18A ; color #1.6 #d1a8a8 ;
> color #1.7 #d1a8bd ; color #1.8 #7edcb4 ; color #1.9 #A8A8D1 ; color #5.1
> #7ed5dc ; color #5.2 #dc7ea6 ; color #5.3 #dec98f ; color #5.4 #7ea6dc ;
> color #5.5 #A8D18A ; color #5.6 #d1a8a8 ; color #5.7 #d1a8bd ; color #5.8
> #7edcb4 ; color #5.9 #A8A8D1 ; color #6.1 #7ed5dc ; color #6.2 #dc7ea6 ;
> color #6.3 #dec98f ; color #6.4 #7ea6dc ; color #6.5 #A8D18A ; color #6.6
> #d1a8a8 ; color #6.7 #d1a8bd ; color #6.8 #7edcb4 ; color #6.9 #A8A8D1 ;
> color #7.1 #7ed5dc ; color #7.2 #dc7ea6 ; color #7.3 #dec98f ; color #7.4
> #7ea6dc ; color #7.5 #A8D18A ; color #7.6 #d1a8a8 ; color #7.7 #d1a8bd ;
> color #7.8 #7edcb4 ; color #7.9 #A8A8D1 ; color #8.1 #7ed5dc ; color #8.2
> #dc7ea6 ; color #8.3 #dec98f ; color #8.4 #7ea6dc ; color #8.5 #A8D18A ;
> color #8.6 #d1a8a8 ; color #8.7 #d1a8bd ; color #8.8 #7edcb4 ; color #8.9
> #A8A8D1"
> buttonpanel Random rows 7
> buttonpanel Random add Tiles command "tile #1-10 columns 10 spacingFactor 1"
> buttonpanel Random add Coordin command "ui tool show "Map Coordinates""
> buttonpanel Random add ColorZone command "color zone #523 near #521 distance
> 20"
> buttonpanel Random add SplitByColor command "volume splitbyzone #532"
> buttonpanel Random add HideDust command "surface dust #1-99 size 39.1"
UCSF ChimeraX version: 1.11.1 (2026-01-23)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M2 Max
OpenGL vendor: Apple
Python: 3.11.9
Locale: en_US.UTF-8
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac Studio
Model Identifier: Mac14,13
Model Number: Z17Z000J8D/A
Chip: Apple M2 Max
Total Number of Cores: 12 (8 performance and 4 efficiency)
Memory: 64 GB
System Firmware Version: 13822.41.1
OS Loader Version: 13822.41.1
Software:
System Software Overview:
System Version: macOS 26.1 (25B78)
Kernel Version: Darwin 25.1.0
Time since boot: 5 days, 6 hours, 1 minute
Graphics/Displays:
Apple M2 Max:
Chipset Model: Apple M2 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 30
Vendor: Apple (0x106b)
Metal Support: Metal 4
Displays:
Display:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
aiohappyeyeballs: 2.6.1
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.12.1
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.1
attrs: 25.4.0
babel: 2.17.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 3.12.2
build: 1.3.0
certifi: 2025.7.14
cftime: 1.6.5
charset-normalizer: 3.4.4
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.1.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.61.4
ChimeraX-AtomicLibrary: 14.2.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.0
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.11.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.7.3
ChimeraX-Label: 1.2
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.2
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.1.0
ChimeraX-MDcrds: 2.17.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.2
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.22
ChimeraX-ModelPanel: 1.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.2
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.12
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.4.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.5
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.10
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.3
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.49.1
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.5.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.3.1
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.13.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.1.4
debugpy: 1.8.19
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.61.1
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.15.1
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.11
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.3.0
ipykernel: 6.30.1
ipython: 9.5.0
ipython_pygments_lexers: 1.1.1
ipywidgets: 8.1.8
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.26.0
jsonschema-specifications: 2025.9.1
jupyter_client: 8.6.3
jupyter_core: 5.9.1
jupyterlab_widgets: 3.0.16
kiwisolver: 1.4.9
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.1
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.0
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.5
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.5.1
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.4.1
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.12.5
pydantic-settings: 2.12.0
pydantic_core: 2.41.5
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.3.6
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.3.2
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.9.1
PyQt6-Qt6: 6.9.2
PyQt6-WebEngine-commercial: 6.9.0
PyQt6-WebEngine-Qt6: 6.9.2
PyQt6_sip: 13.10.2
pytest: 9.0.2
pytest-cov: 7.0.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.1
python-multipart: 0.0.21
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.1.0
roman-numerals-py: 4.1.0
rpds-py: 0.30.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8.3
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.2.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.2.0
stack-data: 0.6.3
starlette: 0.52.1
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.4
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
urllib3: 2.6.3
uvicorn: 0.40.0
wcwidth: 0.3.2
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.15
yarl: 1.22.0
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