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Opened 3 hours ago
Last modified 108 minutes ago
#20010 assigned defect
Crash in swap_buffers exposing status line during Mac wakeup, macOS 26
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-26.3.1-arm64-arm-64bit
ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Current thread 0x0000000206f57100 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 248 in swap_buffers
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 561 in swap_buffers
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py", line 166 in status
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py", line 98 in _expose_event
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 414 in event_loop
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1064 in init
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1229 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, PIL._imaging, chimerax.pdb_lib._load_libs, psutil._psutil_osx, psutil._psutil_posix, chimerax.map._map, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio (total: 49)
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"uptime" : 30000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac15,9",
"coalitionID" : 2096,
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"build" : "25D771280a",
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"captureTime" : "2026-03-20 10:09:12.8368 -0400",
"codeSigningMonitor" : 2,
"incident" : "4177FF8B-615B-46DB-8FE4-B72753248A33",
"pid" : 3408,
"translated" : false,
"cpuType" : "ARM-64",
"procLaunch" : "2026-03-19 15:29:01.9013 -0400",
"procStartAbsTime" : 442848371154,
"procExitAbsTime" : 736216929497,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.11.1.app\/Contents\/MacOS\/ChimeraX",
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"parentProc" : "launchd",
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"crashReporterKey" : "DA5EBF17-B274-A459-6FAF-74AC1A37B5D2",
"lowPowerMode" : 1,
"appleIntelligenceStatus" : {"state":"available"},
"developerMode" : 1,
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRFOD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkQng\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "DAD3247C-AE55-4BD0-B4F9-ED5FDB0708A0",
"wakeTime" : 1542,
"sleepWakeUUID" : "907B2E11-A5EE-4D91-9150-2DE4A5812987",
"sip" : "enabled",
"vmRegionInfo" : "0x800001d00 is in 0x57c000000-0x868c00000; bytes after start: 10804534528 bytes before end: 1757405951
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
mapped file 30b210000-314bb4000 [153.6M] r--\/rwx SM=COW Object_id=b2f26517
GAP OF 0x26744c000 BYTES
---> commpage (reserved) 57c000000-868c00000 [ 11.7G] ---\/--- SM=NUL reserved VM address space (unallocated)
MALLOC_SMALL 868c00000-869000000 [ 4096K] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000002, 0x0000000800001d00","rawCodes":[2,34359745792],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_PROTECTION_FAILURE at 0x0000000800001d00"},
"termination" : {"flags":0,"code":10,"namespace":"SIGNAL","indicator":"Bus error: 10","byProc":"ChimeraX","byPid":3408},
"vmregioninfo" : "0x800001d00 is in 0x57c000000-0x868c00000; bytes after start: 10804534528 bytes before end: 1757405951
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
mapped file 30b210000-314bb4000 [153.6M] r--\/rwx SM=COW Object_id=b2f26517
GAP OF 0x26744c000 BYTES
---> commpage (reserved) 57c000000-868c00000 [ 11.7G] ---\/--- SM=NUL reserved VM address space (unallocated)
MALLOC_SMALL 868c00000-869000000 [ 4096K] rw-\/rwx SM=PRV ",
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===== Log before crash start =====
UCSF ChimeraX version: 1.11.1 (2026-01-23)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> close session
> open
> /Users/shantigangwar/Downloads/cryosparc_P52_J396_volume_class_09_map_sharp.mrc
> /Users/shantigangwar/Downloads/cryosparc_P52_J396_volume_class_08_map_sharp.mrc
> /Users/shantigangwar/Downloads/cryosparc_P52_J396_volume_class_07_map_sharp.mrc
> /Users/shantigangwar/Downloads/cryosparc_P52_J396_volume_class_06_map_sharp.mrc
> /Users/shantigangwar/Downloads/cryosparc_P52_J396_volume_class_05_map_sharp.mrc
> /Users/shantigangwar/Downloads/cryosparc_P52_J396_volume_class_04_map_sharp.mrc
> /Users/shantigangwar/Downloads/cryosparc_P52_J396_volume_class_03_map_sharp.mrc
> /Users/shantigangwar/Downloads/cryosparc_P52_J396_volume_class_02_map_sharp.mrc
> /Users/shantigangwar/Downloads/cryosparc_P52_J396_volume_class_01_map_sharp.mrc
> /Users/shantigangwar/Downloads/cryosparc_P52_J396_volume_class_00_map_sharp.mrc
Opened cryosparc_P52_J396_volume_class_09_map_sharp.mrc as #1.1, grid size
416,416,416, pixel 0.86, shown at level 0.0566, step 2, values float32
Opened cryosparc_P52_J396_volume_class_08_map_sharp.mrc as #1.2, grid size
416,416,416, pixel 0.86, shown at level 0.057, step 2, values float32
Opened cryosparc_P52_J396_volume_class_07_map_sharp.mrc as #1.3, grid size
416,416,416, pixel 0.86, shown at level 0.057, step 2, values float32
Opened cryosparc_P52_J396_volume_class_06_map_sharp.mrc as #1.4, grid size
416,416,416, pixel 0.86, shown at level 0.0567, step 2, values float32
Opened cryosparc_P52_J396_volume_class_05_map_sharp.mrc as #1.5, grid size
416,416,416, pixel 0.86, shown at level 0.0573, step 2, values float32
Opened cryosparc_P52_J396_volume_class_04_map_sharp.mrc as #1.6, grid size
416,416,416, pixel 0.86, shown at level 0.0573, step 2, values float32
Opened cryosparc_P52_J396_volume_class_03_map_sharp.mrc as #1.7, grid size
416,416,416, pixel 0.86, shown at level 0.0565, step 2, values float32
Opened cryosparc_P52_J396_volume_class_02_map_sharp.mrc as #1.8, grid size
416,416,416, pixel 0.86, shown at level 0.0569, step 2, values float32
Opened cryosparc_P52_J396_volume_class_01_map_sharp.mrc as #1.9, grid size
416,416,416, pixel 0.86, shown at level 0.0574, step 2, values float32
Opened cryosparc_P52_J396_volume_class_00_map_sharp.mrc as #1.10, grid size
416,416,416, pixel 0.86, shown at level 0.0579, step 2, values float32
> surface dust #1.1 size 8.6
> surface dust #1.2 size 8.6
> surface dust #1.3 size 8.6
> surface dust #1.4 size 8.6
> surface dust #1.5 size 8.6
> surface dust #1.6 size 8.6
> surface dust #1.7 size 8.6
> surface dust #1.8 size 8.6
> surface dust #1.9 size 8.6
> surface dust #1.10 size 8.6
> lighting soft
> set bgColor white
> volume step 1 level 0.1
> volume step 1 level 0.09
> hide #!1.1 models
> hide #!1.2 models
> hide #!1.3 models
> hide #!1.4 models
> hide #!1.5 models
> hide #!1.6 models
> hide #!1.7 models
> hide #!1.8 models
> hide #!1.9 models
> hide #!1.10 models
> show #!1.1 models
> volume step 1 level 0.08
> hide #!1.1 models
> show #!1.2 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.2 models
> open 8FWS
Summary of feedback from opening 8FWS fetched from pdb
---
warnings | Cannot find consistent set of bond orders for ring system containing atom CAG in residue 2J9 /A:1009
Cannot find consistent set of bond orders for ring system containing atom CAG
in residue 2J9 /C:1001
Cannot find consistent set of bond orders for ring system containing atom CAG
in residue 2J9 /A:1001
Cannot find consistent set of bond orders for ring system containing atom CAG
in residue 2J9 /C:1002
8fws title:
Structure of the ligand-binding and transmembrane domains of kainate receptor
GluK2 in complex with the positive allosteric modulator BPAM344 [more info...]
Chain information for 8fws #2
---
Chain | Description | UniProt
A B C D | Glutamate receptor ionotropic, kainate 2 | GRIK2_RAT 1-908
Non-standard residues in 8fws #2
---
2J9 — 4-cyclopropyl-7-fluoro-3,4-dihydro-2H-1,2,4-benzothiadiazine 1,1-dioxide
BMA — beta-D-mannopyranose (beta-D-mannose; D-mannose; mannose)
CL — chloride ion
NA — sodium ion
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)
POV — (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl
2-(trimethylammonio)ethyl phosphate (POPC)
> hide atoms
> ui mousemode right "move picked models"
> view matrix models #2,1,0,0,-0.56799,0,1,0,0.26858,0,0,1,12.097
> ui mousemode right "rotate selected models"
> ui mousemode right "move picked models"
> ui mousemode right "rotate selected models"
> ui mousemode right "move picked models"
> view matrix models #2,1,0,0,-89.763,0,1,0,12.863,0,0,1,51.288
> ui mousemode right "rotate selected models"
> select add #2
14416 atoms, 14732 bonds, 8 pseudobonds, 1726 residues, 2 models selected
> view matrix models
> #2,0.42726,-0.90385,0.022325,168.83,-0.89957,-0.42746,-0.089758,439.93,0.090671,0.018267,-0.99571,344.09
> ui mousemode right "move picked models"
> view matrix models
> #2,0.42726,-0.90385,0.022325,259.33,-0.89957,-0.42746,-0.089758,419.64,0.090671,0.018267,-0.99571,344.99
> ui tool show "Fit in Map"
> fitmap #2 inMap #1.1
Fit molecule 8fws (#2) to map cryosparc_P52_J396_volume_class_09_map_sharp.mrc
(#1.1) using 14416 atoms
average map value = 0.08332, steps = 120
shifted from previous position = 9.52
rotated from previous position = 5.77 degrees
atoms outside contour = 7407, contour level = 0.08
Position of 8fws (#2) relative to
cryosparc_P52_J396_volume_class_09_map_sharp.mrc (#1.1) coordinates:
Matrix rotation and translation
0.39346993 -0.91933693 -0.00101108 272.39053553
-0.91933722 -0.39347042 0.00033005 411.85590925
-0.00070125 0.00079966 -0.99999943 365.20158362
Axis 0.83470644 -0.55069491 -0.00051220
Axis point 0.00000000 295.75157917 182.71908258
Rotation angle (degrees) 179.98388250
Shift along axis 0.37212339
> select subtract #2
Nothing selected
> volume #1.1 level 0.1569
> volume #1.1 level 0.09521
> fitmap #2 inMap #1.1
Fit molecule 8fws (#2) to map cryosparc_P52_J396_volume_class_09_map_sharp.mrc
(#1.1) using 14416 atoms
average map value = 0.08332, steps = 44
shifted from previous position = 0.016
rotated from previous position = 0.0116 degrees
atoms outside contour = 8711, contour level = 0.095211
Position of 8fws (#2) relative to
cryosparc_P52_J396_volume_class_09_map_sharp.mrc (#1.1) coordinates:
Matrix rotation and translation
0.39349738 -0.91932520 -0.00099026 272.38503835
-0.91932560 -0.39349769 0.00013085 411.87604997
-0.00050996 0.00085889 -0.99999950 365.15779760
Axis 0.83471468 -0.55068248 -0.00044890
Axis point 0.00000000 295.73999552 182.70596590
Rotation angle (degrees) 179.97501349
Shift along axis 0.38694562
> fitmap #2 inMap #1.1
Fit molecule 8fws (#2) to map cryosparc_P52_J396_volume_class_09_map_sharp.mrc
(#1.1) using 14416 atoms
average map value = 0.08332, steps = 44
shifted from previous position = 0.0168
rotated from previous position = 0.00302 degrees
atoms outside contour = 8714, contour level = 0.095211
Position of 8fws (#2) relative to
cryosparc_P52_J396_volume_class_09_map_sharp.mrc (#1.1) coordinates:
Matrix rotation and translation
0.39347821 -0.91933345 -0.00094609 272.38098844
-0.91933380 -0.39347852 0.00015072 411.88751387
-0.00051083 0.00081047 -0.99999954 365.16631783
Axis 0.83470894 -0.55069120 -0.00043589
Axis point 0.00000000 295.75090335 182.70305577
Rotation angle (degrees) 179.97735682
Shift along axis 0.37684553
> hide #!1.1 models
> show #!1.1 models
> fitmap #2 inMap #1.1
Fit molecule 8fws (#2) to map cryosparc_P52_J396_volume_class_09_map_sharp.mrc
(#1.1) using 14416 atoms
average map value = 0.08332, steps = 40
shifted from previous position = 0.0201
rotated from previous position = 0.00629 degrees
atoms outside contour = 8703, contour level = 0.095211
Position of 8fws (#2) relative to
cryosparc_P52_J396_volume_class_09_map_sharp.mrc (#1.1) coordinates:
Matrix rotation and translation
0.39347233 -0.91933587 -0.00104067 272.39713852
-0.91933633 -0.39347263 0.00009551 411.87584129
-0.00049728 0.00091915 -0.99999945 365.14522875
Axis 0.83470718 -0.55069384 -0.00046025
Axis point 0.00000000 295.74028095 182.70860686
Rotation angle (degrees) 179.97173192
Shift along axis 0.38630002
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.2 models
> fitmap #2 inMap #1.2
Fit molecule 8fws (#2) to map cryosparc_P52_J396_volume_class_08_map_sharp.mrc
(#1.2) using 14416 atoms
average map value = 0.08909, steps = 48
shifted from previous position = 0.358
rotated from previous position = 0.0473 degrees
atoms outside contour = 6653, contour level = 0.08
Position of 8fws (#2) relative to
cryosparc_P52_J396_volume_class_08_map_sharp.mrc (#1.2) coordinates:
Matrix rotation and translation
0.39276532 -0.91963800 -0.00115909 272.57734310
-0.91963839 -0.39276595 0.00037360 411.81326000
-0.00079883 0.00091920 -0.99999926 364.84562255
Axis 0.83449539 -0.55101461 -0.00058599
Axis point 0.00000000 295.86186877 182.55886379
Rotation angle (degrees) 179.98126986
Shift along axis 0.33561558
> fitmap #2 inMap #1.2
Fit molecule 8fws (#2) to map cryosparc_P52_J396_volume_class_08_map_sharp.mrc
(#1.2) using 14416 atoms
average map value = 0.08909, steps = 44
shifted from previous position = 0.0169
rotated from previous position = 0.0131 degrees
atoms outside contour = 6660, contour level = 0.08
Position of 8fws (#2) relative to
cryosparc_P52_J396_volume_class_08_map_sharp.mrc (#1.2) coordinates:
Matrix rotation and translation
0.39275880 -0.91964057 -0.00132159 272.60626895
-0.91964096 -0.39275974 0.00053534 411.76926131
-0.00101139 0.00100513 -0.99999898 364.86825721
Axis 0.83449343 -0.55101745 -0.00069827
Axis point 0.00000000 295.85505734 182.58292065
Rotation angle (degrees) 179.98387230
Shift along axis 0.34131457
> volume #1.2 level 0.09456
> show atoms
> transparency #1.2.1 50
> transparency #1.2.1 0
> hide atoms
> hide #!1.2 models
> show #!1.3 models
> fitmap #2 inMap #1.3
Fit molecule 8fws (#2) to map cryosparc_P52_J396_volume_class_07_map_sharp.mrc
(#1.3) using 14416 atoms
average map value = 0.08362, steps = 60
shifted from previous position = 0.208
rotated from previous position = 0.131 degrees
atoms outside contour = 7308, contour level = 0.08
Position of 8fws (#2) relative to
cryosparc_P52_J396_volume_class_07_map_sharp.mrc (#1.3) coordinates:
Matrix rotation and translation
0.39481382 -0.91876073 -0.00087644 272.10397125
-0.91876079 -0.39481433 0.00050375 411.99898666
-0.00080885 0.00060635 -0.99999949 365.08953904
Axis 0.83510861 -0.55008486 -0.00050152
Axis point 0.00000000 295.61002865 182.63405603
Rotation angle (degrees) 179.99648023
Shift along axis 0.41886677
> color #2 #ea4125ff
> show #!1.2 models
> hide #!1.2 models
> show #!1.2 models
> hide #!1.2 models
> show #!1.2 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.2 models
> hide #!1.3 models
> show #!1.3 models
> show #!1.2 models
> hide #!1.3 models
> volume step 1 level 0.08
> show #!1.3 models
> hide #!1.2 models
> show #!1.2 models
> hide #!1.2 models
> show #!1.2 models
> volume #1.3 level 0.08636
> show #!1.1 models
> hide #!1.2 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.3 models
> show #!1.2 models
> hide #!1.1 models
> hide #!1.2 models
> show #!1.2 models
> hide #!1.3 models
> hide #!1.2 models
> show #!1.3 models
> show #!1.4 models
> hide #!1.3 models
> show #!1.5 models
> hide #!1.4 models
> hide #!1.5 models
> show #!1.6 models
> hide #!1.6 models
> show #!1.7 models
> hide #!1.7 models
> show #!1.8 models
> hide #!1.8 models
> show #!1.9 models
> hide #!1.9 models
> hide #!2 models
> show #!1.10 models
> show #!1.9 models
> show #!1.8 models
> show #!1.7 models
> show #!1.6 models
> show #!1.5 models
> show #!1.4 models
> show #!1.3 models
> show #!1.2 models
> show #!1.1 models
> ui tool show "Side View"
> hide #!1.1 models
> hide #!1.2 models
> hide #!1.3 models
> hide #!1.4 models
> hide #!1.5 models
> hide #!1.6 models
> hide #!1.7 models
> hide #!1.8 models
> hide #!1.9 models
> hide #!1.10 models
> show #!1.1 models
> hide #!1.1 models
> show #!1.2 models
> hide #!1.2 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.4 models
> hide #!1.4 models
> show #!1.5 models
> hide #!1.5 models
> show #!1.6 models
> hide #!1.6 models
> show #!1.7 models
> hide #!1.7 models
> show #!1.8 models
> hide #!1.8 models
> show #!1.9 models
> hide #!1.9 models
> show #!1.10 models
> hide #!1.10 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> hide #!1 models
Unsupported scale factor (0.000000) detected on Display1
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.11.1 (2026-01-23)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M3 Max
OpenGL vendor: Apple
Python: 3.11.9
Locale: en_US.UTF-8
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,9
Model Number: MUW63LL/A
Chip: Apple M3 Max
Total Number of Cores: 16 (12 Performance and 4 Efficiency)
Memory: 48 GB
System Firmware Version: 13822.81.10
OS Loader Version: 13822.81.10
Software:
System Software Overview:
System Version: macOS 26.3.1 (a) (25D771280a)
Kernel Version: Darwin 25.3.0
Time since boot: 1 day, 1 hour, 12 minutes
Graphics/Displays:
Apple M3 Max:
Chipset Model: Apple M3 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 40
Vendor: Apple (0x106b)
Metal Support: Metal 4
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL U2415:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
aiohappyeyeballs: 2.6.1
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.12.1
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.1
attrs: 25.4.0
babel: 2.17.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 3.12.2
build: 1.3.0
certifi: 2025.7.14
cftime: 1.6.5
charset-normalizer: 3.4.4
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.1.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.61.4
ChimeraX-AtomicLibrary: 14.2.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.0
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.11.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.7.3
ChimeraX-Label: 1.2
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.2
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.1.0
ChimeraX-MDcrds: 2.17.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.2
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.22
ChimeraX-ModelPanel: 1.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.2
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.12
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.4.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.5
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.10
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.3
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.49.1
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.5.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.3.1
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.13.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.1.4
debugpy: 1.8.19
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.61.1
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.15.1
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.11
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.3.0
ipykernel: 6.30.1
ipython: 9.5.0
ipython_pygments_lexers: 1.1.1
ipywidgets: 8.1.8
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.26.0
jsonschema-specifications: 2025.9.1
jupyter_client: 8.6.3
jupyter_core: 5.9.1
jupyterlab_widgets: 3.0.16
kiwisolver: 1.4.9
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.1
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.0
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.5
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.5.1
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.4.1
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.12.5
pydantic-settings: 2.12.0
pydantic_core: 2.41.5
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.3.6
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.3.2
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.9.1
PyQt6-Qt6: 6.9.2
PyQt6-WebEngine-commercial: 6.9.0
PyQt6-WebEngine-Qt6: 6.9.2
PyQt6_sip: 13.10.2
pytest: 9.0.2
pytest-cov: 7.0.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.1
python-multipart: 0.0.21
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.1.0
roman-numerals-py: 4.1.0
rpds-py: 0.30.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8.3
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.2.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.2.0
stack-data: 0.6.3
starlette: 0.52.1
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.4
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
urllib3: 2.6.3
uvicorn: 0.40.0
wcwidth: 0.3.2
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.15
yarl: 1.22.0
Change History (1)
comment:1 by , 108 minutes ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in swap_buffers exposing status line during Mac wakeup, macOS 26 |
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