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Opened 2 hours ago
#20104 new defect
ChimeraX bug report submission
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Unassigned | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | ||
| Project: |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
UCSF ChimeraX version: 1.11.1 (2026-01-23)
© 2016-2025 Regents of the University of California. All rights reserved.
> open D:\MADS\잔기치환\ATHA_candidates\FG_candidates\AGL80.cxs format session
Log from Wed Apr 1 17:52:51 2026UCSF ChimeraX version: 1.11.1 (2026-01-23)
© 2016-2025 Regents of the University of California. All rights reserved.
> open D:\MADS\잔기치환\ATHA_candidates\FG_candidates\AGL82.cxs format session
Log from Wed Apr 1 17:51:13 2026UCSF ChimeraX version: 1.11.1 (2026-01-23)
© 2016-2025 Regents of the University of California. All rights reserved.
> open D:/MADS/잔기치환/ATHA_candidates/FG_candidates/AGL62.cxs
Log from Wed Apr 1 17:42:07 2026UCSF ChimeraX version: 1.11.1 (2026-01-23)
© 2016-2025 Regents of the University of California. All rights reserved.
> open
> D:\MADS\잔기치환\ATHA_candidates\FG_candidates\nC3_control\AGL35_a2_origin.cxs
> format session
Log from Wed Apr 1 17:02:09 2026UCSF ChimeraX version: 1.11.1 (2026-01-23)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> D:/MADS/잔기치환/ATHA_candidates/MKD/pdb/ATHA_79_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
ATHA_79_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> sequence chain #1/A
Alignment identifier is 1/A
> select /A:131
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:1-131
1062 atoms, 1077 bonds, 131 residues, 1 model selected
> close session
> open D:/MADS/잔기치환/ATHA_candidates/pdb/ATHA_AGL35_a2.pdb
Chain information for ATHA_AGL35_a2.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> set bgColor white
> color dark gray
> lighting soft
> save
> D:\MADS\잔기치환\ATHA_candidates\FG_candidates\nC3_control\AGL35_a2_origin.tiff
> save
> D:\MADS\잔기치환\ATHA_candidates\FG_candidates\nC3_control\AGL35_a2_origin.cxs
——— End of log from Wed Apr 1 17:02:09 2026 ———
> view name session-start
opened ChimeraX session
> close session
> open D:/MADS/잔기치환/ATHA_candidates/pdb/ATHA_AGL53_AT5G27070.pdb
Chain information for ATHA_AGL53_AT5G27070.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> sequence chain #1/A
Alignment identifier is 1/A
> select /A:103
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:1-103
832 atoms, 840 bonds, 103 residues, 1 model selected
> hide sel cartoons
> select /A:144
9 atoms, 8 bonds, 1 residue, 1 model selected
> select /A:144-287
1133 atoms, 1168 bonds, 144 residues, 1 model selected
> hide sel cartoons
> lighting soft
> color dark gray
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/nC3_control/ATHA_84-aln_7_22_25_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
Chain information for
ATHA_84-aln_7_22_25_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb #2
---
Chain | Description
A | No description available
Computing secondary structure
> select add #1
2289 atoms, 2334 bonds, 287 residues, 1 model selected
> select subtract #1
Nothing selected
> hide #1 models
> select add #2
321 atoms, 324 bonds, 40 residues, 1 model selected
> color sel dark gray
> select subtract #2
Nothing selected
> select #2 : 22
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #2 : 37
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #2 : 40
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select add #2
321 atoms, 324 bonds, 40 residues, 1 model selected
> select subtract #2
Nothing selected
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL53_aln27_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
AGL53_aln27_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb #3
---
Chain | Description
A | No description available
Computing secondary structure
> hide #2 models
> select add #3
319 atoms, 323 bonds, 40 residues, 1 model selected
> color sel dark gray
> select #3 : 22
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #2 : 37
7 atoms, 7 bonds, 1 residue, 1 model selected
> select #3 : 37
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #3 : 40
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #3 : 27
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #3
319 atoms, 323 bonds, 40 residues, 1 model selected
> select subtract #3
Nothing selected
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL53_aln30_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
AGL53_aln30_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb #4
---
Chain | Description
A | No description available
Computing secondary structure
> hide #3 models
> select add #4
320 atoms, 324 bonds, 40 residues, 1 model selected
> color sel dark gray
> select #4 : 22
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #4 : 37
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #4 : 40
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #4 : 30
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #4
320 atoms, 324 bonds, 40 residues, 1 model selected
> select subtract #4
Nothing selected
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL53_aln33_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
AGL53_aln33_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb #5
---
Chain | Description
A | No description available
Computing secondary structure
> hide #4 models
> select add #5
320 atoms, 324 bonds, 40 residues, 1 model selected
> select up
3569 atoms, 3629 bonds, 447 residues, 5 models selected
> select up
3569 atoms, 3629 bonds, 447 residues, 5 models selected
> select up
3569 atoms, 3629 bonds, 447 residues, 5 models selected
> select down
320 atoms, 324 bonds, 40 residues, 1 model selected
> select down
320 atoms, 324 bonds, 40 residues, 1 model selected
> select down
320 atoms, 324 bonds, 40 residues, 1 model selected
> color sel dark gray
> select subtract #5
Nothing selected
> select #5 : 22
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #5 : 37
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #5 : 40
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #5 : 33
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #5
320 atoms, 324 bonds, 40 residues, 1 model selected
> select subtract #5
Nothing selected
> save D:\MADS\잔기치환\ATHA_candidates\FG_candidates\AGL53.cxs
> close session
> open D:/MADS/잔기치환/ATHA_candidates/pdb/ATHA_AGL62_AT5G60440.1_rank_001.pdb
Chain information for ATHA_AGL62_AT5G60440.1_rank_001.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> sequence chain #1/A
Alignment identifier is 1/A
> select /A:145
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /A:1-145
1178 atoms, 1198 bonds, 145 residues, 1 model selected
> hide sel cartoons
> select /A:174
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:174-299
1039 atoms, 1071 bonds, 126 residues, 1 model selected
> hide sel cartoons
> color sel dark gray
> color dark gray
> lighting full
> lighting soft
[Repeated 2 time(s)]
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/nC3_control/ATHA_106-aln_22_25_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
Chain information for
ATHA_106-aln_22_25_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb #2
---
Chain | Description
A | No description available
Computing secondary structure
> select add #1
2439 atoms, 2495 bonds, 299 residues, 1 model selected
> hide #1 models
> select subtract #1
Nothing selected
> select add #2
220 atoms, 224 bonds, 28 residues, 1 model selected
> select #2
220 atoms, 224 bonds, 28 residues, 1 model selected
> color sel dark gray
> select subtract #2
Nothing selected
> select #2 : 7
11 atoms, 11 bonds, 1 residue, 1 model selected
> color sel red
> select #2 : 22
5 atoms, 4 bonds, 1 residue, 1 model selected
> color sel red
> select #2 : 25
11 atoms, 11 bonds, 1 residue, 1 model selected
> color sel red
> select add #2
220 atoms, 224 bonds, 28 residues, 1 model selected
> select subtract #2
Nothing selected
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL62_aln27_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
Chain information for
AGL62_aln27_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb #3
---
Chain | Description
A | No description available
Computing secondary structure
> hide #2 models
> select #3
219 atoms, 224 bonds, 28 residues, 1 model selected
> color sel dark gray
> select #3 : 7
11 atoms, 11 bonds, 1 residue, 1 model selected
> color sel red
> select #3 : 22
5 atoms, 4 bonds, 1 residue, 1 model selected
> color sel red
[Repeated 1 time(s)]
> select #3 : 25
11 atoms, 11 bonds, 1 residue, 1 model selected
> color sel red
> select #3 : 12
9 atoms, 8 bonds, 1 residue, 1 model selected
> color sel blue
> select add #3
219 atoms, 224 bonds, 28 residues, 1 model selected
> select subtract #3
Nothing selected
> hide #3 models
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL62_aln30_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
AGL62_aln30_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb #4
---
Chain | Description
A | No description available
Computing secondary structure
> select #4
219 atoms, 224 bonds, 28 residues, 1 model selected
> color sel dark gray
> select #4 : 7
11 atoms, 11 bonds, 1 residue, 1 model selected
> color sel red
> select #4 : 22
5 atoms, 4 bonds, 1 residue, 1 model selected
> color sel red
> select #4 : 25
11 atoms, 11 bonds, 1 residue, 1 model selected
> color sel red
> select #4 : 15
9 atoms, 8 bonds, 1 residue, 1 model selected
> color sel blue
> select add #4
219 atoms, 224 bonds, 28 residues, 1 model selected
> select subtract #4
Nothing selected
> hide #4 models
> show #4 models
> hide #4 models
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL62_aln33_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
Chain information for
AGL62_aln33_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb #5
---
Chain | Description
A | No description available
Computing secondary structure
> select #5
216 atoms, 220 bonds, 28 residues, 1 model selected
> color sel dark gray
> select #5 : 7
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select #5 : 22
5 atoms, 4 bonds, 1 residue, 1 model selected
> color sel red
> select #5 : 25
11 atoms, 11 bonds, 1 residue, 1 model selected
> color sel red
> select #5 : 18
7 atoms, 6 bonds, 1 residue, 1 model selected
> color sel blue
> select add #5
216 atoms, 220 bonds, 28 residues, 1 model selected
> select subtract #5
Nothing selected
> save D:\MADS\잔기치환\ATHA_candidates\FG_candidates\AGL62.cxs
——— End of log from Wed Apr 1 17:42:07 2026 ———
> view name session-start
opened ChimeraX session
> hide #5 models
> show #2 models
> select add #2
220 atoms, 224 bonds, 28 residues, 1 model selected
> color sel dark gray
> select add #3
439 atoms, 448 bonds, 56 residues, 2 models selected
> select add #4
658 atoms, 672 bonds, 84 residues, 3 models selected
> select add #5
874 atoms, 892 bonds, 112 residues, 4 models selected
> color sel dark gray
> select subtract #5
658 atoms, 672 bonds, 84 residues, 3 models selected
> select subtract #4
439 atoms, 448 bonds, 56 residues, 2 models selected
> select add #4
658 atoms, 672 bonds, 84 residues, 3 models selected
> select subtract #3
439 atoms, 448 bonds, 56 residues, 2 models selected
> select subtract #4
220 atoms, 224 bonds, 28 residues, 1 model selected
> select #2 : 11
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel red
> select add #2
220 atoms, 224 bonds, 28 residues, 1 model selected
> select add #3
439 atoms, 448 bonds, 56 residues, 2 models selected
> select add #4
658 atoms, 672 bonds, 84 residues, 3 models selected
> select add #5
874 atoms, 892 bonds, 112 residues, 4 models selected
> select : 11
36 atoms, 35 bonds, 5 residues, 5 models selected
> select add #1
2467 atoms, 2523 bonds, 303 residues, 5 models selected
> select subtract #1
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select : 14
35 atoms, 34 bonds, 5 residues, 5 models selected
> select add #1
2467 atoms, 2523 bonds, 303 residues, 5 models selected
> select subtract #1
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select add #2
241 atoms, 245 bonds, 31 residues, 4 models selected
> select subtract #2
21 atoms, 21 bonds, 3 residues, 3 models selected
> hide #2 models
> show #3 models
> select add #3
233 atoms, 238 bonds, 30 residues, 3 models selected
> select subtract #3
14 atoms, 14 bonds, 2 residues, 2 models selected
> select add #4
226 atoms, 231 bonds, 29 residues, 2 models selected
> select subtract #4
7 atoms, 7 bonds, 1 residue, 1 model selected
> select add #5
216 atoms, 220 bonds, 28 residues, 1 model selected
> select subtract #5
Nothing selected
> select #3 : 12
9 atoms, 8 bonds, 1 residue, 1 model selected
> color sel blue
> undo
> select #3 : 1
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #3
219 atoms, 224 bonds, 28 residues, 1 model selected
> select subtract #3
Nothing selected
> hide #3 models
> show #4 models
> select #4 : 4
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #4
219 atoms, 224 bonds, 28 residues, 1 model selected
> select subtract #4
Nothing selected
> hide #4 models
> show #5 models
> select #5: 7
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #5
216 atoms, 220 bonds, 28 residues, 1 model selected
> select subtract #5
Nothing selected
> save D:\MADS\잔기치환\ATHA_candidates\FG_candidates\AGL62.cxs
> close session
> open D:/MADS/잔기치환/ATHA_candidates/pdb/ATHA_AGL80_a1_su.pdb
Chain information for ATHA_AGL80_a1_su.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> lighting soft
> color darkred gary
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color dark gray
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/nC3_control/ATHA_99-aln_7_22_25_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
Chain information for
ATHA_99-aln_7_22_25_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb #2
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL80_aln27_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
Chain information for
AGL80_aln27_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb #3
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL80_aln30_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
Chain information for
AGL80_aln30_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb #4
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL80_aln33_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
Chain information for
AGL80_aln33_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb #5
---
Chain | Description
A | No description available
Computing secondary structure
> color dark gray
> hide #5 models
> hide #4 models
> hide #3 models
> show #3 models
> hide #2 models
> hide #3 models
> hide #1 models
> show #2 models
> select add #2
234 atoms, 238 bonds, 28 residues, 1 model selected
> select add #3
466 atoms, 475 bonds, 56 residues, 2 models selected
> select add #4
699 atoms, 713 bonds, 84 residues, 3 models selected
> select add #5
933 atoms, 952 bonds, 112 residues, 4 models selected
> select : 7
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select : 22
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select : 25
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select add #3
253 atoms, 258 bonds, 31 residues, 4 models selected
> select add #4
479 atoms, 489 bonds, 58 residues, 4 models selected
> select subtract #4
246 atoms, 251 bonds, 30 residues, 3 models selected
> select add #5
473 atoms, 483 bonds, 57 residues, 3 models selected
> select subtract #3
241 atoms, 246 bonds, 29 residues, 2 models selected
> select subtract #5
7 atoms, 7 bonds, 1 residue, 1 model selected
> select add #2
234 atoms, 238 bonds, 28 residues, 1 model selected
> select subtract #2
Nothing selected
> hide #2 models
> show #3 models
> select add #3
232 atoms, 237 bonds, 28 residues, 1 model selected
> select #3 : 12
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #3
232 atoms, 237 bonds, 28 residues, 1 model selected
> select subtract #3
Nothing selected
> hide #3 models
> show #4 models
> select #4 : 15
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #4
233 atoms, 238 bonds, 28 residues, 1 model selected
> select subtract #4
Nothing selected
> hide #4 models
> show #5 models
> select #4 : 18
7 atoms, 6 bonds, 1 residue, 1 model selected
> select add #4
233 atoms, 238 bonds, 28 residues, 1 model selected
> select subtract #4
Nothing selected
> select #5 : 15
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #5 : 18
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #5
234 atoms, 239 bonds, 28 residues, 1 model selected
> select subtract #5
Nothing selected
> save D:\MADS\잔기치환\ATHA_candidates\FG_candidates\AGL82.cxs
——— End of log from Wed Apr 1 17:51:13 2026 ———
> view name session-start
opened ChimeraX session
> save D:\MADS\잔기치환\ATHA_candidates\FG_candidates\AGL80.cxs
——— End of log from Wed Apr 1 17:52:51 2026 ———
> view name session-start
opened ChimeraX session
> close session
> open D:\MADS\잔기치환\ATHA_candidates\pdb\ATHA_AGL82_AT5G58890.1_rank_001.pdb
> format pdb
Chain information for ATHA_AGL82_AT5G58890.1_rank_001.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/nC3_control/ATHA_105-aln_7_22_25_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb
Chain information for
ATHA_105-aln_7_22_25_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb #2
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL82_aln27_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
AGL82_aln27_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb #3
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL82_aln30_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
Chain information for
AGL82_aln30_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb #4
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL82_aln33_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
Chain information for
AGL82_aln33_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb #5
---
Chain | Description
A | No description available
Computing secondary structure
> color dark gray
> sequence chain #1/A
Alignment identifier is 1/A
> hide #2 models
> hide #3 models
> hide #5 models
> hide #4 models
> select #1/A:128
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/A:1-128
1032 atoms, 1046 bonds, 128 residues, 1 model selected
> hide sel cartoons
> select #1/A:164-165
14 atoms, 14 bonds, 2 residues, 1 model selected
> select #1/A:164-294
1079 atoms, 1112 bonds, 131 residues, 1 model selected
> hide sel cartoons
> lighting soft
> hide #1 models
> select add #1
2397 atoms, 2449 bonds, 294 residues, 1 model selected
> select subtract #1
Nothing selected
> show #2 models
> show #3 models
> hide #3 models
> select add #2
284 atoms, 290 bonds, 35 residues, 1 model selected
> select add #3
567 atoms, 580 bonds, 70 residues, 2 models selected
> select add #4
850 atoms, 870 bonds, 105 residues, 3 models selected
> select add #5
1136 atoms, 1163 bonds, 140 residues, 4 models selected
> select : 7
36 atoms, 35 bonds, 5 residues, 5 models selected
> select add #1
2425 atoms, 2477 bonds, 298 residues, 5 models selected
> select subtract #1
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select : 22
37 atoms, 36 bonds, 5 residues, 5 models selected
> select add #1
2425 atoms, 2477 bonds, 298 residues, 5 models selected
> select subtract #1
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select : 25
37 atoms, 36 bonds, 5 residues, 5 models selected
> select add #1
2425 atoms, 2477 bonds, 298 residues, 5 models selected
> select subtract #1
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select add #2
305 atoms, 311 bonds, 38 residues, 4 models selected
> select subtract #2
21 atoms, 21 bonds, 3 residues, 3 models selected
> select add #3
297 atoms, 304 bonds, 37 residues, 3 models selected
> select subtract #3
14 atoms, 14 bonds, 2 residues, 2 models selected
> select add #4
290 atoms, 297 bonds, 36 residues, 2 models selected
> select subtract #4
7 atoms, 7 bonds, 1 residue, 1 model selected
> select add #5
286 atoms, 293 bonds, 35 residues, 1 model selected
> select subtract #5
Nothing selected
> hide #2 models
> show #3 models
> select #3 : 12
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #3
283 atoms, 290 bonds, 35 residues, 1 model selected
> select subtract #3
Nothing selected
> hide #3 models
> show #4 models
> select #4 : 15
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #4
283 atoms, 290 bonds, 35 residues, 1 model selected
> select subtract #4
Nothing selected
> select #5 : 18
7 atoms, 7 bonds, 1 residue, 1 model selected
> hide #4 models
> show #5 models
> color sel blue
> select add #5
286 atoms, 293 bonds, 35 residues, 1 model selected
> select subtract #5
Nothing selected
> hide #5 models
> save D:\MADS\잔기치환\ATHA_candidates\FG_candidates\AGL82.cxs
> close session
> open D:/MADS/잔기치환/ATHA_candidates/pdb/ATHA_AGL90_AT5G27960.pdb
Chain information for ATHA_AGL90_AT5G27960.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/nC3_control/ATHA_90-aln_7_22_25_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
Chain information for
ATHA_90-aln_7_22_25_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb #2
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL90_aln27_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
Chain information for
AGL90_aln27_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb #3
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL90_aln30_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
Chain information for
AGL90_aln30_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb #4
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL90_aln33_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
Chain information for
AGL90_aln33_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb #5
---
Chain | Description
A | No description available
Computing secondary structure
> color dark gray
> hide #2 models
> show #2 models
> hide #3 models
> show #3 models
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> sequence chain #1/A
Alignment identifier is 1/A
> lighting soft
> select #1/A:129
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #1/A:1-129
1056 atoms, 1073 bonds, 129 residues, 1 model selected
> hide sel cartoons
> select #1/A:159
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/A:159-320
1289 atoms, 1320 bonds, 162 residues, 1 model selected
> hide sel cartoons
> select add #1
2573 atoms, 2623 bonds, 320 residues, 1 model selected
> hide #1 models
> select subtract #1
Nothing selected
> select add #2
233 atoms, 236 bonds, 30 residues, 1 model selected
> select add #3
457 atoms, 464 bonds, 59 residues, 2 models selected
> select add #4
681 atoms, 692 bonds, 88 residues, 3 models selected
> select add #5
905 atoms, 920 bonds, 117 residues, 4 models selected
> select : 7
35 atoms, 33 bonds, 5 residues, 5 models selected
> select add #1
2602 atoms, 2651 bonds, 324 residues, 5 models selected
> select subtract #1
29 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> show #2 models
> select : 22
43 atoms, 41 bonds, 5 residues, 5 models selected
> select add #1
2605 atoms, 2654 bonds, 324 residues, 5 models selected
> select subtract #1
32 atoms, 31 bonds, 4 residues, 4 models selected
> color sel red
> select : 25
31 atoms, 29 bonds, 5 residues, 5 models selected
> select add #1
2600 atoms, 2649 bonds, 324 residues, 5 models selected
> select subtract #1
27 atoms, 26 bonds, 4 residues, 4 models selected
> color sel red
> select add #2
254 atoms, 257 bonds, 33 residues, 4 models selected
> select subtract #2
21 atoms, 21 bonds, 3 residues, 3 models selected
> hide #2 models
> show #3 models
> select add #4
238 atoms, 242 bonds, 31 residues, 3 models selected
> select add #5
455 atoms, 463 bonds, 59 residues, 3 models selected
> select add #3
672 atoms, 684 bonds, 87 residues, 3 models selected
> select subtract #3
448 atoms, 456 bonds, 58 residues, 2 models selected
> select subtract #4
224 atoms, 228 bonds, 29 residues, 1 model selected
> select subtract #5
Nothing selected
> select #3 : 12
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #3
224 atoms, 228 bonds, 29 residues, 1 model selected
> select subtract #3
Nothing selected
> hide #3 models
> show #4 models
> select #4 : 15
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #4
224 atoms, 228 bonds, 29 residues, 1 model selected
> select subtract #4
Nothing selected
> hide #4 models
> show #5 models
> select #5 : 18
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #5
224 atoms, 228 bonds, 29 residues, 1 model selected
> select subtract #5
Nothing selected
> save D:\MADS\잔기치환\ATHA_candidates\FG_candidates\AGL90.cxs
> close session
> open D:/MADS/잔기치환/ATHA_candidates/pdb/ATHA_AGL92_AT1G31640.1_rank_001.pdb
Chain information for ATHA_AGL92_AT1G31640.1_rank_001.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/nC3_control/ATHA_13-aln_7_22_25_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
Chain information for
ATHA_13-aln_7_22_25_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb #2
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL92_aln27_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
Chain information for
AGL92_aln27_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb #3
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL92_aln30_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
Chain information for
AGL92_aln30_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb #4
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/extra_nC4/AGL92_aln33_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
Chain information for
AGL92_aln33_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb #5
---
Chain | Description
A | No description available
Computing secondary structure
> color dark gray
> lighting soft
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> sequence chain #1/A
Alignment identifier is 1/A
> select #1/A:129
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1/A:1-129
1064 atoms, 1083 bonds, 129 residues, 1 model selected
> hide sel cartoons
> select #1/A:158
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #1/A:158-464
2372 atoms, 2445 bonds, 307 residues, 1 model selected
> hide sel cartoons
> select add #1
3676 atoms, 3773 bonds, 464 residues, 1 model selected
> hide #1 models
> select subtract #1
Nothing selected
> select add #2
236 atoms, 242 bonds, 28 residues, 1 model selected
> select add #3
471 atoms, 484 bonds, 56 residues, 2 models selected
> select add #4
706 atoms, 726 bonds, 84 residues, 3 models selected
> select add #5
941 atoms, 968 bonds, 112 residues, 4 models selected
> color sel 7
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> show #2 models
> select : 7
36 atoms, 35 bonds, 5 residues, 5 models selected
> select add #1
3704 atoms, 3801 bonds, 468 residues, 5 models selected
> select subtract #1
28 atoms, 28 bonds, 4 residues, 4 models selected
> select : 7
36 atoms, 35 bonds, 5 residues, 5 models selected
> select add #1
3704 atoms, 3801 bonds, 468 residues, 5 models selected
> select subtract #1
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select : 22
37 atoms, 36 bonds, 5 residues, 5 models selected
> select add #1
3704 atoms, 3801 bonds, 468 residues, 5 models selected
> select subtract #1
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select : 25
33 atoms, 32 bonds, 5 residues, 5 models selected
> select add #1
3704 atoms, 3801 bonds, 468 residues, 5 models selected
> select subtract #1
28 atoms, 28 bonds, 4 residues, 4 models selected
> color sel red
> select add #2
257 atoms, 263 bonds, 31 residues, 4 models selected
> select subtract #2
21 atoms, 21 bonds, 3 residues, 3 models selected
> show #3 models
> hide #2 models
> show #2 models
> select add #3
249 atoms, 256 bonds, 30 residues, 3 models selected
> select subtract #3
14 atoms, 14 bonds, 2 residues, 2 models selected
> hide #2 models
> select add #4
242 atoms, 249 bonds, 29 residues, 2 models selected
> select add #5
470 atoms, 484 bonds, 56 residues, 2 models selected
> select subtract #4
235 atoms, 242 bonds, 28 residues, 1 model selected
> select subtract #5
Nothing selected
> select #3 : 12
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #3
235 atoms, 242 bonds, 28 residues, 1 model selected
> select subtract #3
Nothing selected
> hide #3 models
> show #4 models
> select #4 : 15
7 atoms, 7 bonds, 1 residue, 1 model selected
> color sel blue
> select add #4
235 atoms, 242 bonds, 28 residues, 1 model selected
> select subtract #4
Nothing selected
> select #5 : 18
7 atoms, 7 bonds, 1 residue, 1 model selected
> hide #4 models
> show #5 models
> color sel blue
> select add #5
235 atoms, 242 bonds, 28 residues, 1 model selected
> select subtract #5
Nothing selected
> save D:\MADS\잔기치환\ATHA_candidates\FG_candidates\AGL92.cxs
> close session
> open
> D:/MADS/잔기치환/SLYC/SLYC_MADS.9.1_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb
Chain information for
SLYC_MADS.9.1_unrelaxed_rank_001_alphafold2_ptm_model_4_seed_000.pdb #1
---
Chain | Description
A | No description available
Computing secondary structure
> sequence chain #1/A
Alignment identifier is 1/A
> select /A:79
6 atoms, 5 bonds, 1 residue, 1 model selected
> select /A:1-79
632 atoms, 642 bonds, 79 residues, 1 model selected
> hide sel cartoons
> lighting simple
> select /A:111
7 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:111-160
406 atoms, 413 bonds, 50 residues, 1 model selected
> select /A:110
10 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:110-160
416 atoms, 424 bonds, 51 residues, 1 model selected
> hide sel cartoons
> lighting soft
> open
> D:/MADS/잔기치환/ATHA_candidates/FG_candidates/nC3_control/SLYC_MADS.9.1_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
SLYC_MADS.9.1_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb #2
---
Chain | Description
A | No description available
Computing secondary structure
> hide #2 models
> color dark gray
> hide #1 models
> select add #1
1305 atoms, 1329 bonds, 160 residues, 1 model selected
> close session
> open
> D:/MADS/잔기치환/SLYC/Solyc08T001429.1_su_a2-14_18_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
Solyc08T001429.1_su_a2-14_18_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
#1
---
Chain | Description
A | No description available
Computing secondary structure
> open
> D:/MADS/잔기치환/SLYC/SLYC_M_Solyc08T001429.1_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
SLYC_M_Solyc08T001429.1_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
#2
---
Chain | Description
A | No description available
Computing secondary structure
> hide #1 models
> sequence chain #2/A
Alignment identifier is 2/A
> select #2/A:131
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #2/A:1-131
1070 atoms, 1094 bonds, 131 residues, 1 model selected
> hide sel cartoons
> select #2/A:159
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #2/A:159-177
149 atoms, 152 bonds, 19 residues, 1 model selected
> hide sel cartoons
> color dark gray
> lighting soft
> open
> D:/MADS/잔기치환/SLYC/SLYC_M_Solyc10T000647.1_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
Chain information for
SLYC_M_Solyc10T000647.1_unrelaxed_rank_001_alphafold2_ptm_model_5_seed_000.pdb
#3
---
Chain | Description
A | No description available
Computing secondary structure
> sequence chain #3/A
Alignment identifier is 3/A
> select #3/A:137
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #3/A:1-137
1091 atoms, 1106 bonds, 137 residues, 1 model selected
> hide sel cartoons
> select #3/A:167
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #3/A:167-181
104 atoms, 105 bonds, 15 residues, 1 model selected
> select #3/A:184
11 atoms, 11 bonds, 1 residue, 1 model selected
> select #3/A:167-184
130 atoms, 132 bonds, 18 residues, 1 model selected
> hide sel cartoons
[Repeated 3 time(s)]
> hide #2 models
> color dark gray
> select #3/A:138
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #3/A:138-166
237 atoms, 240 bonds, 29 residues, 1 model selected
> hide #3 models
> select add #3
1458 atoms, 1480 bonds, 184 residues, 1 model selected
> select subtract #3
Nothing selected
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\graphics.py", line 54, in event
if self.handle_drag_and_drop(event):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\graphics.py", line 124, in handle_drag_and_drop
mw.dropEvent(event)
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\gui.py", line 813, in dropEvent
md = event.mimeData()
^^^^^^^^^^^^^^
AttributeError: 'QGraphicsSceneMouseEvent' object has no attribute 'mimeData'
AttributeError: 'QGraphicsSceneMouseEvent' object has no attribute 'mimeData'
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\gui.py", line 813, in dropEvent
md = event.mimeData()
^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\graphics.py", line 54, in event
if self.handle_drag_and_drop(event):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\graphics.py", line 124, in handle_drag_and_drop
mw.dropEvent(event)
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\gui.py", line 813, in dropEvent
md = event.mimeData()
^^^^^^^^^^^^^^
AttributeError: 'QGraphicsSceneMouseEvent' object has no attribute 'mimeData'
AttributeError: 'QGraphicsSceneMouseEvent' object has no attribute 'mimeData'
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\gui.py", line 813, in dropEvent
md = event.mimeData()
^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\graphics.py", line 54, in event
if self.handle_drag_and_drop(event):
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\graphics.py", line 124, in handle_drag_and_drop
mw.dropEvent(event)
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\gui.py", line 813, in dropEvent
md = event.mimeData()
^^^^^^^^^^^^^^
AttributeError: 'QGraphicsSceneMouseEvent' object has no attribute 'mimeData'
AttributeError: 'QGraphicsSceneMouseEvent' object has no attribute 'mimeData'
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\ui\gui.py", line 813, in dropEvent
md = event.mimeData()
^^^^^^^^^^^^^^
See log for complete Python traceback.
OpenGL version: 3.3.0 - Build 31.0.101.2111
OpenGL renderer: Intel(R) UHD Graphics 630
OpenGL vendor: Intel
Python: 3.11.9
Locale: ko_KR.cp949
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: windows
Manufacturer: System manufacturer
Model: System Product Name
OS: Microsoft Windows 10 Pro (Build 19045)
Memory: 17,037,082,624
MaxProcessMemory: 137,438,953,344
CPU: 6 Intel(R) Core(TM) i5-9600K CPU @ 3.70GHz
OSLanguage: ko-KR
Installed Packages:
aiohappyeyeballs: 2.6.1
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.12.1
appdirs: 1.4.4
asttokens: 3.0.1
attrs: 25.4.0
babel: 2.17.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 3.12.2
build: 1.3.0
certifi: 2026.1.4
cftime: 1.6.5
charset-normalizer: 3.4.4
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.1.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.61.4
ChimeraX-AtomicLibrary: 14.2.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.0
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.11.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.7.3
ChimeraX-Label: 1.2
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.2
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.1.0
ChimeraX-MDcrds: 2.17.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.2
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.22
ChimeraX-ModelPanel: 1.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.2
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.12
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.4.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.5
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.10
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.3
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.49.1
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.5.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.3.1
colorama: 0.4.6
comm: 0.2.3
comtypes: 1.4.11
contourpy: 1.3.3
coverage: 7.13.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.1.4
debugpy: 1.8.19
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.61.1
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.15.1
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.11
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.3.0
ipykernel: 6.30.1
ipython: 9.5.0
ipython_pygments_lexers: 1.1.1
ipywidgets: 8.1.8
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.26.0
jsonschema-specifications: 2025.9.1
jupyter_client: 8.6.3
jupyter_core: 5.9.1
jupyterlab_widgets: 3.0.16
kiwisolver: 1.4.9
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.1
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.0
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
nvidia-nvjitlink-cu12: 12.9.86
OpenMM: 8.2.0
OpenMM-CUDA-12: 8.2.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.5
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.5.1
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.4.1
psutil: 7.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.12.5
pydantic-settings: 2.12.0
pydantic_core: 2.41.5
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.3.6
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.3.2
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.9.1
PyQt6-Qt6: 6.9.2
PyQt6-WebEngine-commercial: 6.9.0
PyQt6-WebEngine-Qt6: 6.9.2
PyQt6_sip: 13.10.2
pytest: 9.0.2
pytest-cov: 7.0.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.1
python-multipart: 0.0.21
pywin32: 311
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.1.0
roman-numerals-py: 4.1.0
rpds-py: 0.30.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8.3
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.2.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.2.0
stack-data: 0.6.3
starlette: 0.52.1
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.4
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
tzdata: 2025.3
urllib3: 2.6.3
uvicorn: 0.40.0
wcwidth: 0.3.2
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.15
WMI: 1.5.1
yarl: 1.22.0
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