![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 39 hours ago
Last modified 9 hours ago
#20246 assigned defect
glClear: invalid framebuffer operation on statusbar expose
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-26.2-arm64-arm-64bit
ChimeraX Version: 1.12.dev202604290127 (2026-04-29 01:27:48 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
UCSF ChimeraX version: 1.12.dev202604290127 (2026-04-29)
© 2016-2026 Regents of the University of California. All rights reserved.
> open "/Users/miguel/Tresorit/Avista/Projects/AAVmers/Linked_AAVs/8FZ0_VRs
> MB.cxs" format session
Log from Mon Apr 27 11:43:14 2026UCSF ChimeraX version: 1.12.dev202602120348
(2026-02-12)
© 2016-2026 Regents of the University of California. All rights reserved.
> open "/Users/miguel/Tresorit/Avista/Projects/AAVmers/Linked_AAVs/8FZ0_VRs
> 2.cxs"
Log from Mon Apr 27 10:11:34 2026UCSF ChimeraX version: 1.11.dev202511122144
(2025-11-12)
© 2016-2025 Regents of the University of California. All rights reserved.
> open /Users/tht13/Documents/VRs/8FZ0_VRs.cxs
Log from Thu Apr 23 13:23:45 2026UCSF ChimeraX version: 1.11.dev202511122144
(2025-11-12)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 9rwg
9rwg title:
Pentameric AAV2 Rep40 in complex with AAV8 [more info...]
Chain information for 9rwg #1
---
Chain | Description | UniProt
A B E F G H I Q R S U V W X Y | Capsid protein | Q8JQF8_9VIRU 1-738 152-738 350-738
a b c d e | Protein Rep68 | REP68_AAV2S 1-336
Non-standard residues in 9rwg #1
---
ADP — adenosine-5'-diphosphate
MG — magnesium ion
> open 9zcw
9zcw title:
Cryo-EM structure of the engineered vector AAV2.ATX002 [more info...]
Chain information for 9zcw #2
---
Chain | Description | UniProt
1 2 3 4 5 6 7 8 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h i j k l m n o p q r s t u v w x y z | Engineered AAV2 capsid protein VP3 | CAPSD_AAV2S 1-542
> ui tool show Matchmaker
> matchmaker #!1 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 9zcw, chain r (#2) with 9rwg, chain R (#1), sequence alignment
score = 2270
RMSD between 418 pruned atom pairs is 0.559 angstroms; (across all 433 pairs:
1.088)
> select #1/a,b,c,d
8715 atoms, 8921 bonds, 1093 residues, 1 model selected
> hide sel atoms
> select ~sel
281146 atoms, 289377 bonds, 103 pseudobonds, 35070 residues, 4 models selected
> hide sel atoms
> show sel cartoons
> color #2 #e7ef44ff
> select clear
> show atoms
> style stick
Changed 289861 atom styles
> color byhetero
> select #1/a,b,c,d
8715 atoms, 8921 bonds, 1093 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> hide #2 models
> select #1/V:330@CD
1 atom, 1 residue, 1 model selected
> view clip false
> show target m
> undo
> select clear
> close #1
> open 9rwg
9rwg title:
Pentameric AAV2 Rep40 in complex with AAV8 [more info...]
Chain information for 9rwg #1
---
Chain | Description | UniProt
A B E F G H I Q R S U V W X Y | Capsid protein | Q8JQF8_9VIRU 1-738 152-738 350-738
a b c d e | Protein Rep68 | REP68_AAV2S 1-336
Non-standard residues in 9rwg #1
---
ADP — adenosine-5'-diphosphate
MG — magnesium ion
> show #!1 surfaces
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C59DA54B-64B1-4F40-8E6B-33CF2F96963B/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C59DA54B-64B1-4F40-8E6B-33CF2F96963B/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb
---
warnings | Ignored bad PDB record found on line 24175
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24176
#BEGIN_POSE_ENERGIES_TABLE
MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb
Ignored bad PDB record found on line 24177
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24178
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24179
pose -9534.16 9011.16 6130.92 39.6692 379.849 -156.361 -1314.44 1594.07
-97.6146 -320.122 -175.499 -39.4595 0 36.0975 7962.07 -124.625 0 298.767
346.377 14036.7
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb
#3
---
Chain | Description
A B C | No description available
Computing secondary structure
> hide #!1 models
> view #3 clip false
> sequence chain
> #2/1,2,3,4,5,6,7,8,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z
Alignment identifier is 1
> sequence chain #1/A,B,E,F,G,H,I,Q,R,S,U,V,W,X,Y
Alignment identifier is 2
> sequence chain #1/a,b,c,d,e
Alignment identifier is 3
> sequence chain #3/A,B,C
Alignment identifier is 4
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C59DA54B-64B1-4F40-8E6B-33CF2F96963B/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C59DA54B-64B1-4F40-8E6B-33CF2F96963B/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb
---
warnings | Ignored bad PDB record found on line 24175
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24176
#BEGIN_POSE_ENERGIES_TABLE
MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb
Ignored bad PDB record found on line 24177
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24178
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24179
pose -9534.16 9011.16 6130.92 39.6692 379.849 -156.361 -1314.44 1594.07
-97.6146 -320.122 -175.499 -39.4595 0 36.0975 7962.07 -124.625 0 298.767
346.377 14036.7
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb
#1
---
Chain | Description
A B C | No description available
Computing secondary structure
> sequence chain #1/A,B,C
Alignment identifier is 1
> select /B:890
14 atoms, 13 bonds, 1 residue, 1 model selected
> select clear
> select /A:363-364/B:882-883/C:1401-1402
81 atoms, 78 bonds, 6 residues, 1 model selected
> select /A:363-364/B:882-883/C:1401-1402
81 atoms, 78 bonds, 6 residues, 1 model selected
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/696EAAAF-E689-46AC-9028-87AD1CC93EB8/MATNLQRGNRQAATGTY__1.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/696EAAAF-E689-46AC-9028-87AD1CC93EB8/MATNLQRGNRQAATGTY__1.pdb
---
warnings | Ignored bad PDB record found on line 24175
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24176
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24177
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24178
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24179
pose -9534.16 9011.16 6130.92 39.6692 379.849 -156.361 -1314.44 1594.07
-97.6146 -320.122 -175.499 -39.4595 0 36.0975 7962.07 -124.625 0 298.767
346.377 14036.7
3264 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY__1.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> sequence chain #1/A,B,C
Alignment identifier is 1
> select /A:363/B:882/C:1401
48 atoms, 45 bonds, 3 residues, 1 model selected
> select /A:363-380/B:882-899/C:1401-1418
789 atoms, 786 bonds, 54 residues, 1 model selected
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C58F556D-277F-435F-BCEC-114B11BF4400/VSTNLQAGNAAAESTGRERAAAQAATADV_aav2_trimer_INPUT_remodeled_0001.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C58F556D-277F-435F-BCEC-114B11BF4400/VSTNLQAGNAAAESTGRERAAAQAATADV_aav2_trimer_INPUT_remodeled_0001.pdb
---
warnings | Ignored bad PDB record found on line 24586
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24587
#BEGIN_POSE_ENERGIES_TABLE
VSTNLQAGNAAAESTGRERAAAQAATADV_aav2_trimer_INPUT_remodeled_0001.pdb
Ignored bad PDB record found on line 24588
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24589
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24590
pose -9668.85 8392.96 6231.38 39.7301 385.159 -161.71 -1340.89 1594.07
-96.3484 -326.241 -178.584 -39.4595 0 36.1935 8012.57 -123.566 0 297.232
1018.35 14072
1602 messages similar to the above omitted
Chain information for
VSTNLQAGNAAAESTGRERAAAQAATADV_aav2_trimer_INPUT_remodeled_0001.pdb #2
---
Chain | Description
A B C | No description available
Computing secondary structure
> close #1
> sequence chain #2/A,B,C
Alignment identifier is 1
> select clear
[Repeated 1 time(s)]
> select /A:381
24 atoms, 23 bonds, 1 residue, 1 model selected
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B9EC3596-103F-4EC2-87E7-E67581DDFB7B/MATNNQRGNRAPATGTY__1.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B9EC3596-103F-4EC2-87E7-E67581DDFB7B/MATNNQRGNRAPATGTY__1.pdb
---
warnings | Ignored bad PDB record found on line 24169
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24170
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24171
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24172
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24173
pose -9534.05 10284.8 6133.47 39.5952 379.321 -156.579 -1320.7 2174.61
-97.6146 -320.122 -175.508 -39.4595 0 35.642 7929.54 -111.613 0 290.432
381.106 15892.9
3264 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTY__1.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> close #2
> sequence chain #1/A,B,C
Alignment identifier is 1
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/AC426003-632A-4C19-84F1-1C5D8A4EC7DE/MATNLQRGNRQAATGTY__1.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/AC426003-632A-4C19-84F1-1C5D8A4EC7DE/MATNLQRGNRQAATGTY__1.pdb
---
warnings | Ignored bad PDB record found on line 24175
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24176
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24177
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24178
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24179
pose -9534.16 9011.16 6130.92 39.6692 379.849 -156.361 -1314.44 1594.07
-97.6146 -320.122 -175.499 -39.4595 0 36.0975 7962.07 -124.625 0 298.767
346.377 14036.7
3264 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY__1.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> sequence chain #1/A,B,C
Alignment identifier is 1
> close session
> open 9zcw
9zcw title:
Cryo-EM structure of the engineered vector AAV2.ATX002 [more info...]
Chain information for 9zcw #1
---
Chain | Description | UniProt
1 2 3 4 5 6 7 8 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h i j k l m n o p q r s t u v w x y z | Engineered AAV2 capsid protein VP3 | CAPSD_AAV2S 1-542
> show cartoons
> hide atoms
> select /Z:268
8 atoms, 7 bonds, 1 residue, 1 model selected
> view clip false
> show target m
> view clip false
> select clear
> close session
> open 6nz0
6nz0 title:
Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2 [more
info...]
Chain information for 6nz0 #1
---
Chain | Description | UniProt
A | Capsid protein VP1 | CAPSD_AAV2S 1-735
Z | Dyslexia-associated protein KIAA0319-like protein | K319L_HUMAN 311-597
Non-standard residues in 6nz0 #1
---
MG — magnesium ion
6nz0 mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
> sym #1 assembly 1
Made 60 graphical clones for 6nz0 assembly 1
> view
> open /Users/tht13/Downloads/emd_0553.map.gz
File reader requires uncompressed file;
'/Users/tht13/Downloads/emd_0553.map.gz' is compressed
> open /Users/tht13/Downloads/emd_0553.map
Opened emd_0553.map as #3, grid size 384,384,384, pixel 1.05, shown at level
0.139, step 2, values float32
> volume #3 level 0.02652
> volume #3 level 0.1036
> show #!2 atoms
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/4859BE1F-3DBE-4007-A046-30C30A2542AA/MATNLQRGNRQAATGTY_aav2_trimer_INPUTremodelled_0001.pdb
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUTremodelled_0001.pdb
#4
---
Chain | Description
A B C | No description available
Computing secondary structure
> close #1-3
> sequence chain #4/A,B,C
Alignment identifier is 1
> select clear
> select /B:371
14 atoms, 13 bonds, 1 residue, 1 model selected
> select /A-C:363
48 atoms, 45 bonds, 3 residues, 1 model selected
> select /A-C:363-364
96 atoms, 93 bonds, 6 residues, 1 model selected
> select /A-C:363-364,377-379
240 atoms, 234 bonds, 15 residues, 1 model selected
> color sel red
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C9485B72-7C23-4D1C-A55E-3D798D8FD5C2/MATNNQRGNRAPATGTY__2.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C9485B72-7C23-4D1C-A55E-3D798D8FD5C2/MATNNQRGNRAPATGTY__2.pdb
---
warnings | Ignored bad PDB record found on line 24169
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24170
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24171
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24172
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24173
pose -9534.05 10284.8 6133.47 39.5952 379.321 -156.579 -1320.7 2174.61
-97.6146 -320.122 -175.508 -39.4595 0 35.642 7929.54 -111.613 0 290.432
381.106 15892.9
3264 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTY__2.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> sequence chain #1/A,B,C
Alignment identifier is 1
> close
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/6A4CFD2F-D49E-484B-873F-5452301FDE3B/MATNLQRGNRQAATGTY__2.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/6A4CFD2F-D49E-484B-873F-5452301FDE3B/MATNLQRGNRQAATGTY__2.pdb
---
warnings | Ignored bad PDB record found on line 24175
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24176
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24177
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24178
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24179
pose -9534.16 9011.16 6130.92 39.6692 379.849 -156.361 -1314.44 1594.07
-97.6146 -320.122 -175.499 -39.4595 0 36.0975 7962.07 -124.625 0 298.767
346.377 14036.7
3264 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY__2.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> sequence chain #1/A,B,C
Alignment identifier is 1
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/79143B61-ECF6-4A90-9956-DEC3FCA5CBC8/VSTNLQRGNKMEADGRQAATADV__2.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/79143B61-ECF6-4A90-9956-DEC3FCA5CBC8/VSTNLQRGNKMEADGRQAATADV__2.pdb
---
warnings | Ignored bad PDB record found on line 24439
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24440
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24441
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24442
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24443
pose -9626.29 12978.4 6243.41 39.7166 385.008 -162.004 -1315.09 1594.07
-93.7199 -325.997 -175.499 -39.4595 0 37.0542 8005.28 -120.77 0 275.366
1041.23 18740.7
3300 messages similar to the above omitted
Chain information for VSTNLQRGNKMEADGRQAATADV__2.pdb #2
---
Chain | Description
A B C | No description available
Computing secondary structure
> close #1
> sequence chain #2/A,B,C
Alignment identifier is 1
> select /A:363/B:888/C:1413
48 atoms, 45 bonds, 3 residues, 1 model selected
> select /A:363-385/B:888-910/C:1413-1435
996 atoms, 993 bonds, 69 residues, 1 model selected
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9B5E8858-C6CC-41C0-B77B-6BB8A4064915/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9B5E8858-C6CC-41C0-B77B-6BB8A4064915/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
---
warnings | Ignored bad PDB record found on line 24175
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24176
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
Ignored bad PDB record found on line 24177
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24178
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24179
pose -9079.89 20865.9 5586.89 19.6416 339.536 -150.27 -1550.83 1394.11
-97.6146 -320.122 -148.08 -83.1021 0 36.0975 2236.46 -124.625 0 298.767 1024.3
20247.2
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> close
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9B5E8858-C6CC-41C0-B77B-6BB8A4064915/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9B5E8858-C6CC-41C0-B77B-6BB8A4064915/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
---
warnings | Ignored bad PDB record found on line 24175
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24176
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
Ignored bad PDB record found on line 24177
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24178
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24179
pose -9079.89 20865.9 5586.89 19.6416 339.536 -150.27 -1550.83 1394.11
-97.6146 -320.122 -148.08 -83.1021 0 36.0975 2236.46 -124.625 0 298.767 1024.3
20247.2
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> sequence chain #1/A,B,C
Alignment identifier is 1
> select /A-C:441
33 atoms, 30 bonds, 3 residues, 1 model selected
> select /A-C:441-453
594 atoms, 591 bonds, 39 residues, 1 model selected
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C7E5F42B-07DE-48B6-9BB5-ED2293F52428/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C7E5F42B-07DE-48B6-9BB5-ED2293F52428/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
---
warnings | Ignored bad PDB record found on line 24169
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24170
#BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
Ignored bad PDB record found on line 24171
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24172
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24173
pose -9065.7 22108.6 5564.1 19.7388 335.39 -153.082 -1538.87 1974.65 -97.6146
-320.122 -131.878 -85.6713 0 35.642 2228.46 -111.613 0 290.432 1055.92 22108.3
1566 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0004.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> sequence chain #1/A,B,C
Alignment identifier is 1
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/20D8A92C-14FB-419E-8689-B342E33CBB6A/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0002.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/20D8A92C-14FB-419E-8689-B342E33CBB6A/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0002.pdb
---
warnings | Ignored bad PDB record found on line 24178
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24179
#BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0002.pdb
Ignored bad PDB record found on line 24180
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24181
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24182
pose -9134.26 27867.1 5620.24 18.9283 347.547 -151.472 -1548.29 1401.25
-97.6146 -320.122 -153.912 -86.5529 0 35.9598 2231.38 -126.404 0 275.217
1025.61 27204.6
1566 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0002.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> sequence chain #1/A,B,C
Alignment identifier is 1
> select /A-C:442
51 atoms, 48 bonds, 3 residues, 1 model selected
> select /A-C:442-458
735 atoms, 738 bonds, 51 residues, 1 model selected
> select clear
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/0157699A-2324-4861-9939-283BC9E91B1F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/0157699A-2324-4861-9939-283BC9E91B1F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9102.01 27303.4 5603.19 19.8261 345.853 -155.665 -1552.93 1394.11
-97.6146 -320.122 -143.696 -85.658 0 35.8657 2262.14 -125.807 0 284.799
1024.78 26690.5
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> sequence chain #1/A,B,C
Alignment identifier is 1
> select /A-C:442-443
81 atoms, 78 bonds, 6 residues, 1 model selected
> select /A-C:442-459
801 atoms, 801 bonds, 54 residues, 1 model selected
> show sel atoms
> select clear
> show atoms
> close session
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/2_3_complex.pdb
Chain information for 2_3_complex.pdb #1
---
Chain | Description
A | No description available
B | No description available
Computing secondary structure
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/4_0_complex.pdb
Chain information for 4_0_complex.pdb #2
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/6_5_complex.pdb
Chain information for 6_5_complex.pdb #3
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/9_1_complex.pdb
Chain information for 9_1_complex.pdb #4
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/9_5_complex.pdb
Chain information for 9_5_complex.pdb #5
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/12_0_complex.pdb
Chain information for 12_0_complex.pdb #6
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/12_1_complex.pdb
Chain information for 12_1_complex.pdb #7
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/16_6_complex.pdb
Chain information for 16_6_complex.pdb #8
---
Chain | Description
A | No description available
B | No description available
Computing secondary structure
[Repeated 6 time(s)]
> hide #!2-8 target m
> show #!2 target m
> hide #!1 target m
> show #!3 target m
> hide #!2 target m
> show #!4 target m
> hide #!3 target m
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C21D5D8A-6861-4C49-B5AC-989A5B303235/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C21D5D8A-6861-4C49-B5AC-989A5B303235/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
---
warnings | Ignored bad PDB record found on line 24178
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24179
#BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
Ignored bad PDB record found on line 24180
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24181
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24182
pose -9109.96 27827.9 5606.23 19.0777 343.34 -152.146 -1539.26 1401.25
-97.6146 -320.122 -148.487 -83.9707 0 35.9598 2240.15 -126.404 0 275.217
1025.61 27196.8
1566 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb #9
---
Chain | Description
A B C | No description available
Computing secondary structure
> hide #9 target m
> show #!5 target m
> hide #!4 target m
> show #!1 models
> hide #!1 models
> show #!6 target m
> hide #!5 target m
> show #!7 target m
> hide #!6 target m
> show #!8 target m
> hide #!7 target m
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C21D5D8A-6861-4C49-B5AC-989A5B303235/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C21D5D8A-6861-4C49-B5AC-989A5B303235/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
---
warnings | Ignored bad PDB record found on line 24178
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24179
#BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
Ignored bad PDB record found on line 24180
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24181
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24182
pose -9109.96 27827.9 5606.23 19.0777 343.34 -152.146 -1539.26 1401.25
-97.6146 -320.122 -148.487 -83.9707 0 35.9598 2240.15 -126.404 0 275.217
1025.61 27196.8
1566 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> show atoms
> sequence chain #1/A,B,C
Alignment identifier is 1
> select /A-C:442
51 atoms, 48 bonds, 3 residues, 1 model selected
> select /A-C:442-458
735 atoms, 738 bonds, 51 residues, 1 model selected
> color sel red
> color sel byhetero
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/88EEE323-16EF-4C2A-A5DD-8FFCD4E2359A/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/88EEE323-16EF-4C2A-A5DD-8FFCD4E2359A/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9142.33 27473.5 5586.36 20.256 345.859 -163.731 -1535.06 1394.11
-97.6146 -320.122 -144.743 -76.4443 0 35.8657 2226.12 -125.807 0 284.799
1024.78 26785.8
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/D8670FE3-1458-43F0-9D4A-A4302DADBB73/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/D8670FE3-1458-43F0-9D4A-A4302DADBB73/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9137.39 27376.2 5608.71 19.7773 343.596 -153.244 -1561.98 1394.11
-97.6146 -320.122 -149.24 -78.6113 0 35.8657 2279.79 -125.807 0 284.799
1024.78 26743.7
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb #2
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/7EB74E3F-60D2-4A20-AF35-CE9175A8835F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/7EB74E3F-60D2-4A20-AF35-CE9175A8835F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9107.41 27280.4 5619.67 19.8533 346.127 -154.067 -1571.06 1394.11
-97.6146 -320.122 -143.696 -88.34 0 35.8657 2267.53 -125.807 0 284.799 1024.78
26665.1
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb #3
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/F6D18785-0E57-45FA-
> AF05-3909E1C4FFF0/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/F6D18785-0E57-45FA-
AF05-3909E1C4FFF0/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9118.51 27312.6 5610.77 19.7221 343.823 -154.829 -1536.77 1394.11
-97.6146 -320.122 -141.868 -84.4239 0 35.8657 2265.97 -125.807 0 284.799
1024.78 26712.4
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb #4
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/7F167021-1332-401C-B2F6-2975B40923B3/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/7F167021-1332-401C-B2F6-2975B40923B3/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9107.12 27291.2 5596.4 19.851 340.101 -158.632 -1538.15 1394.11 -97.6146
-320.122 -137.483 -86.3939 0 35.8657 2247.12 -125.807 0 284.799 1024.78
26662.9
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb #5
---
Chain | Description
A B C | No description available
Computing secondary structure
[Repeated 3 time(s)]
> show atoms
> hide #2-5 target m
> show #5 target m
> hide #1 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #3 target m
> hide #4 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #4 target m
> hide #5 target m
> show #3 target m
> hide #4 target m
> show #2 target m
> hide #3 target m
> show #1 target m
> hide #2 target m
> show #5 target m
> hide #1 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> hide #2 cartoons
> show #2 cartoons
> show target m
> close
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/FB507953-9E60-4E3C-9BF4-7DEC42B128DC/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/FB507953-9E60-4E3C-9BF4-7DEC42B128DC/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9101 6065.81 5590.78 21.0089 350.14 -185.857 -1709.35 885.409 -97.6146
-320.122 -213.557 -147.733 0 35.8657 3138.43 -125.807 1.69807 284.799 1024.78
5497.68
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9353D0E7-53AB-43D7-9E6F-4326BE143DE2/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9353D0E7-53AB-43D7-9E6F-4326BE143DE2/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9120.79 6360.95 5571.48 23.4994 349.474 -189.189 -1664.09 886.937
-97.6146 -320.122 -205.638 -120.26 0 35.8657 3110.3 -125.807 0.47178 284.799
1024.78 5805.05
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb #2
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B6B3940D-8DF8-49AE-9E79-7C4749211A85/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B6B3940D-8DF8-49AE-9E79-7C4749211A85/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9089.09 6107.77 5617.34 21.5488 345.214 -185.105 -1706.42 886.593
-97.6146 -320.122 -216.524 -156.561 0 35.8657 3154.18 -125.807 1.76138 284.799
1024.78 5582.59
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb #3
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/FC1D1858-99AF-4CD6-9629-3C2B0ED4845F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/FC1D1858-99AF-4CD6-9629-3C2B0ED4845F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9110.9 6350.37 5585.84 23.3535 350.675 -182.743 -1695.28 885.427
-97.6146 -320.122 -210.238 -132.813 0 35.8657 3111.04 -125.807 0.5193 284.799
1024.78 5777.15
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb #4
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/1A50251F-08B1-4377-86CA-4B64567839A6/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/1A50251F-08B1-4377-86CA-4B64567839A6/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb
---
warnings | Ignored bad PDB record found on line 24202
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24203
#BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb
Ignored bad PDB record found on line 24204
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24205
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24206
pose -9096.84 6071.2 5590.53 21.8544 346.342 -187.106 -1701.54 887.577
-97.6146 -320.122 -212.923 -142.508 0 35.8657 3155.4 -125.807 1.55993 284.799
1024.78 5535.44
1566 messages similar to the above omitted
Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb #5
---
Chain | Description
A B C | No description available
Computing secondary structure
[Repeated 3 time(s)]
> show atoms
> open 3NTT
3ntt title:
Structural insights of Adeno-Associated virus 5. A gene therapy Vector for
Cystic Fibrosis [more info...]
Chain information for 3ntt #6
---
Chain | Description | UniProt
A | Capsid protein | Q9YIJ1_9VIRU 1-724
Non-standard residues in 3ntt #6
---
GOL — glycerol (glycerin; propane-1,2,3-triol)
NA — sodium ion
3ntt mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> ui tool show Matchmaker
> matchmaker #6 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb, chain A (#1)
with 3ntt, chain A (#6), sequence alignment score = 1631.9
RMSD between 447 pruned atom pairs is 0.716 angstroms; (across all 509 pairs:
3.260)
> sym #6 assembly 1
Made 60 graphical clones for 3ntt assembly 1
> view
> ui tool show Matchmaker
> matchmaker #7 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb, chain A (#1)
with 3ntt assembly 1, chain A (#7), sequence alignment score = 1631.9
RMSD between 447 pruned atom pairs is 0.716 angstroms; (across all 509 pairs:
3.260)
> close #7
> view clip false
> show #6 models
> show atoms
> hide #1 models
> hide #2 models
> hide #3 models
> hide #4 models
> color #5-6 byhetero
[Repeated 1 time(s)]
> hide #5 models
> show #5 models
> show #6 target m
> show target m
> hide #6 models
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C6CB6185-2E52-4EF7-A88C-07CB74BB8345/MATNNQRGNLAHDQVRPARAPATGTYNL_aav2_trimer_INPUT_remodeled_0001.pdb
Chain information for
MATNNQRGNLAHDQVRPARAPATGTYNL_aav2_trimer_INPUT_remodeled_0001.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C2955B22-D837-4149-9F39-DCEB33142BB1/MATNLQRGNLAHDQVRPARQAATGTY__2.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C2955B22-D837-4149-9F39-DCEB33142BB1/MATNLQRGNLAHDQVRPARQAATGTY__2.pdb
---
warnings | Ignored bad PDB record found on line 24619
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24620
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24621
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24622
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24623
pose -9714.63 18438.7 6257.29 39.9513 392.778 -153.755 -1310.81 1594.74
-91.131 -326.189 -177.352 -39.4595 0 37.6985 7998.53 -114.108 0 288.754
1055.89 24176.9
3318 messages similar to the above omitted
Chain information for MATNLQRGNLAHDQVRPARQAATGTY__2.pdb #2
---
Chain | Description
A B C | No description available
Computing secondary structure
> hide #1 models
> show #1 models
> hide #2 models
> hide #1 models
> show #2 models
> close #1
> sequence chain #2/A,B,C
Alignment identifier is 1
> select /A:363-364/B:891-892/C:1419-1420
81 atoms, 78 bonds, 6 residues, 1 model selected
> select /A:363-389/B:891-917/C:1419-1445
1218 atoms, 1224 bonds, 81 residues, 1 model selected
> color sel red
> color sel byhetero
> show sel atoms
> select clear
> select /A:369/B:897/C:1425
72 atoms, 69 bonds, 3 residues, 1 model selected
> select /A:369-372/B:897-900/C:1425-1428
192 atoms, 189 bonds, 12 residues, 1 model selected
> select /A:369/B:897/C:1425
72 atoms, 69 bonds, 3 residues, 1 model selected
> select /A:369-371/B:897-899/C:1425-1427
135 atoms, 132 bonds, 9 residues, 1 model selected
> select /A:378/B:906/C:1434
72 atoms, 69 bonds, 3 residues, 1 model selected
> select /A:378-379/B:906-907/C:1434-1435
114 atoms, 114 bonds, 6 residues, 1 model selected
> select /A:381/B:909/C:1437
72 atoms, 69 bonds, 3 residues, 1 model selected
> select /A:381/B:909/C:1437
72 atoms, 69 bonds, 3 residues, 1 model selected
> select /A:369/B:897/C:1425
72 atoms, 69 bonds, 3 residues, 1 model selected
> select /A:369/B:897/C:1425
72 atoms, 69 bonds, 3 residues, 1 model selected
> select clear
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/50E186F9-8AD0-4530-A21D-B35F1A286484/MATNLQRGNLAHDQVRPARQAATGTY__1.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/50E186F9-8AD0-4530-A21D-B35F1A286484/MATNLQRGNLAHDQVRPARQAATGTY__1.pdb
---
warnings | Ignored bad PDB record found on line 24619
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24620
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24621
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24622
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24623
pose -9693.27 16881.5 6247.75 40.142 388.052 -156.098 -1317.6 1804.74 -92.1992
-326.198 -177.402 -39.4595 0 36.2885 7991.58 -112.262 0 288.754 1066 22830.4
3318 messages similar to the above omitted
Chain information for MATNLQRGNLAHDQVRPARQAATGTY__1.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C2955B22-D837-4149-9F39-DCEB33142BB1/MATNLQRGNLAHDQVRPARQAATGTY__2.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C2955B22-D837-4149-9F39-DCEB33142BB1/MATNLQRGNLAHDQVRPARQAATGTY__2.pdb
---
warnings | Ignored bad PDB record found on line 24619
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24620
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24621
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24622
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24623
pose -9714.63 18438.7 6257.29 39.9513 392.778 -153.755 -1310.81 1594.74
-91.131 -326.189 -177.352 -39.4595 0 37.6985 7998.53 -114.108 0 288.754
1055.89 24176.9
3318 messages similar to the above omitted
Chain information for MATNLQRGNLAHDQVRPARQAATGTY__2.pdb #2
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/EE385D4B-734F-444C-B081-CB1F8452C2B8/MATNLQRGNLAHDQVRPARQAATGTY__3.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/EE385D4B-734F-444C-B081-CB1F8452C2B8/MATNLQRGNLAHDQVRPARQAATGTY__3.pdb
---
warnings | Ignored bad PDB record found on line 24619
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24620
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24621
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24622
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24623
pose -9725.71 19315.1 6264.27 39.9358 388.643 -152.798 -1311.76 1722.8
-90.9974 -331.142 -178.078 -43.8268 0 35.9503 7975.25 -106.892 0 288.754
1088.41 25177.9
3318 messages similar to the above omitted
Chain information for MATNLQRGNLAHDQVRPARQAATGTY__3.pdb #3
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/75A8C9BB-2766-4245-A6DB-704742CD1138/MATNLQRGNLAHDQVRPARQAATGTY__4.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/75A8C9BB-2766-4245-A6DB-704742CD1138/MATNLQRGNLAHDQVRPARQAATGTY__4.pdb
---
warnings | Ignored bad PDB record found on line 24619
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24620
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24621
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24622
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24623
pose -9699.69 31453.6 6269.89 39.917 388.672 -149.428 -1338.23 1782.68
-92.7522 -327.003 -175.599 -39.4595 0 38.5617 7976.37 -94.7846 0 288.754
1100.13 37421.7
3318 messages similar to the above omitted
Chain information for MATNLQRGNLAHDQVRPARQAATGTY__4.pdb #4
---
Chain | Description
A B C | No description available
Computing secondary structure
[Repeated 2 time(s)]
> show atoms
> hide #2-4 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show target m
> close session
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/EAA52BEB-5FC2-4EAD-A81D-ED20B1DB8856/VSTNAQRGNNIKQGSTIDHRQAATADV__1.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/EAA52BEB-5FC2-4EAD-A81D-ED20B1DB8856/VSTNAQRGNNIKQGSTIDHRQAATADV__1.pdb
---
warnings | Ignored bad PDB record found on line 24619
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24620
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24621
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24622
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24623
pose -9693.8 11144.7 6293.77 39.912 392.89 -162.123 -1289.39 1594.07 -90.1243
-325.946 -178.331 -39.4595 0 43.497 8030.65 -124.509 0 280.716 1031.64 16948.1
3324 messages similar to the above omitted
Chain information for VSTNAQRGNNIKQGSTIDHRQAATADV__1.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/3D8636F6-556C-4C18-8D62-E3B403CD5673/VSTNAQRGNNIKQGSTIDHRQAATADV__2.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/3D8636F6-556C-4C18-8D62-E3B403CD5673/VSTNAQRGNNIKQGSTIDHRQAATADV__2.pdb
---
warnings | Ignored bad PDB record found on line 24619
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24620
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24621
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24622
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24623
pose -9698.35 13205.2 6311.38 39.7967 386.547 -151.648 -1335.54 1594.07
-95.0504 -331.192 -178.358 -39.4595 0 37.0494 8017.47 -117.94 0 280.716
1038.95 18963.6
3324 messages similar to the above omitted
Chain information for VSTNAQRGNNIKQGSTIDHRQAATADV__2.pdb #2
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/777851B4-B039-425B-BA21-2CD5DF79B2F0/VSTNAQRGNNIKQGSTIDHRQAATADV__3.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/777851B4-B039-425B-BA21-2CD5DF79B2F0/VSTNAQRGNNIKQGSTIDHRQAATADV__3.pdb
---
warnings | Ignored bad PDB record found on line 24619
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24620
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24621
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24622
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24623
pose -9732.19 13471.8 6359.03 39.8116 387.797 -152.224 -1312.97 1594.07
-99.424 -326.136 -177.097 -43.7252 0 36.2248 8015 -119.612 0 280.716 1033.76
19254.8
3324 messages similar to the above omitted
Chain information for VSTNAQRGNNIKQGSTIDHRQAATADV__3.pdb #3
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/8544BDDB-4741-48CD-9FD7-DDEAAE75ED42/VSTNAQRGNNIKQGSTIDHRQAATADV__4.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/8544BDDB-4741-48CD-9FD7-DDEAAE75ED42/VSTNAQRGNNIKQGSTIDHRQAATADV__4.pdb
---
warnings | Ignored bad PDB record found on line 24619
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24620
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24621
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24622
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24623
pose -9734.2 15119.3 6322.08 39.7971 387.126 -163.616 -1310.06 1594.07
-93.4013 -326.116 -178.519 -39.4595 0 35.6371 8029.77 -118.947 0 280.716
1015.61 20859.7
3324 messages similar to the above omitted
Chain information for VSTNAQRGNNIKQGSTIDHRQAATADV__4.pdb #4
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/A45FECC6-8820-4AA7-93C4-239ADFEAB996/VSTNAQRGNNIKQGSTIDHRQAATADV__5.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/A45FECC6-8820-4AA7-93C4-239ADFEAB996/VSTNAQRGNNIKQGSTIDHRQAATADV__5.pdb
---
warnings | Ignored bad PDB record found on line 24619
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24620
#BEGIN_POSE_ENERGIES_TABLE
Ignored bad PDB record found on line 24621
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24622
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24623
pose -9743.78 16324.2 6316.4 40.0556 388.379 -162.184 -1308.34 1594.07
-92.1249 -326.091 -175.499 -39.4595 0 37.6362 8012.52 -118.876 0 280.716
1037.06 22064.7
3324 messages similar to the above omitted
Chain information for VSTNAQRGNNIKQGSTIDHRQAATADV__5.pdb #5
---
Chain | Description
A B C | No description available
Computing secondary structure
[Repeated 3 time(s)]
> show atoms
> sequence chain #1/A,B,C#2/A,B,C#3/A,B,C#4/A,B,C#5/A,B,C
Alignment identifier is 1
> select #1/A:363-364/B:892-893/C:1421-1422 #2/A:363-364/B:892-893/C:1421-1422
> #3/A:363-364/B:892-893/C:1421-1422 #4/A:363-364/B:892-893/C:1421-1422
> #5/A:363-364/B:892-893/C:1421-1422
405 atoms, 390 bonds, 30 residues, 5 models selected
> select #1/A:363-389/B:892-918/C:1421-1447 #2/A:363-389/B:892-918/C:1421-1447
> #3/A:363-389/B:892-918/C:1421-1447 #4/A:363-389/B:892-918/C:1421-1447
> #5/A:363-389/B:892-918/C:1421-1447
5880 atoms, 5880 bonds, 405 residues, 5 models selected
1 [ID: 1] region 15 chains [363-389] RMSD: 4.539
> color sel red
> color sel byhetero
> select clear
> hide #2-5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> show #4 target m
> hide #3 target m
> show #5 target m
> hide #4 target m
> show #1 target m
> hide #5 target m
> show #2 target m
> hide #1 target m
> show #3 target m
> hide #2 target m
> close session
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/2_3_complex.pdb
Chain information for 2_3_complex.pdb #1
---
Chain | Description
A | No description available
B | No description available
Computing secondary structure
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/4_0_complex.pdb
Chain information for 4_0_complex.pdb #2
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/6_5_complex.pdb
Chain information for 6_5_complex.pdb #3
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/9_1_complex.pdb
Chain information for 9_1_complex.pdb #4
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/9_5_complex.pdb
Chain information for 9_5_complex.pdb #5
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/12_0_complex.pdb
Chain information for 12_0_complex.pdb #6
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/12_1_complex.pdb
Chain information for 12_1_complex.pdb #7
---
Chain | Description
A | No description available
B | No description available
> open
> /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/16_6_complex.pdb
Chain information for 16_6_complex.pdb #8
---
Chain | Description
A | No description available
B | No description available
Computing secondary structure
[Repeated 6 time(s)]
> hide #!2-8 target m
> show #!2 target m
> hide #!1 target m
> show #!3 target m
> hide #!2 target m
> show #!4 target m
> hide #!3 target m
> show #!5 target m
> hide #!4 target m
> show #!6 target m
> hide #!5 target m
> hide #!6 models
> show #!4 models
> hide #!4 models
> show #!1 models
> hide #!1 models
> show #!5 models
> hide #!5 models
> show #!8 models
> close #1-8
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/3A813BEB-7174-469B-89CC-921E1B1A960D/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0001.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/3A813BEB-7174-469B-89CC-921E1B1A960D/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0001.pdb
---
warnings | Ignored bad PDB record found on line 24193
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24194
#BEGIN_POSE_ENERGIES_TABLE
MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0001.pdb
Ignored bad PDB record found on line 24195
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24196
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24197
pose -9143.85 8527.97 5651.86 22.2739 349.71 -177.569 -1675.53 922.066
-97.6146 -320.122 -216.081 -134.302 0 35.9598 3205.77 -128.62 0.37912 276.746
1023.29 8122.33
1566 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0001.pdb #1
---
Chain | Description
A B C | No description available
Computing secondary structure
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/32A0AEAB-D9D0-420E-ADB3-63940AA6A382/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0002.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/32A0AEAB-D9D0-420E-ADB3-63940AA6A382/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0002.pdb
---
warnings | Ignored bad PDB record found on line 24193
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24194
#BEGIN_POSE_ENERGIES_TABLE
MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0002.pdb
Ignored bad PDB record found on line 24195
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24196
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24197
pose -9117.02 7706.84 5625.73 22.649 350.852 -181.608 -1669.55 926.629
-97.6146 -320.122 -218.63 -131.748 0 35.9598 3194.46 -128.62 0.42918 276.746
1023.29 7298.67
1566 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0002.pdb #2
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/A849DE8E-AE00-47BE-B052-ABDE5A5A0163/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0003.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/A849DE8E-AE00-47BE-B052-ABDE5A5A0163/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0003.pdb
---
warnings | Ignored bad PDB record found on line 24193
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24194
#BEGIN_POSE_ENERGIES_TABLE
MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0003.pdb
Ignored bad PDB record found on line 24195
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24196
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24197
pose -9137.38 9697.37 5647.54 21.9261 352.729 -167.127 -1706.02 927.23
-97.6146 -320.122 -229.344 -132.574 0 35.9598 3198.15 -128.62 0.31514 276.746
1023.29 9262.45
1566 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0003.pdb #3
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B211297F-41DD-4412-9C14-FDCF9A89662C/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0004.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B211297F-41DD-4412-9C14-FDCF9A89662C/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0004.pdb
---
warnings | Ignored bad PDB record found on line 24193
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24194
#BEGIN_POSE_ENERGIES_TABLE
MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0004.pdb
Ignored bad PDB record found on line 24195
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24196
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24197
pose -9162.98 9893.42 5643 24.0068 349.293 -179.448 -1679.05 918.393 -97.6146
-320.122 -235.579 -130.647 0 35.9598 3201.33 -128.62 0.4421 276.746 1023.29
9431.82
1566 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0004.pdb #4
---
Chain | Description
A B C | No description available
> open
> /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B0417C23-B020-4B14-9DFE-3699A789905E/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0005.pdb
Summary of feedback from opening
/Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B0417C23-B020-4B14-9DFE-3699A789905E/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0005.pdb
---
warnings | Ignored bad PDB record found on line 24193
# All scores below are weighted scores, not raw scores.
Ignored bad PDB record found on line 24194
#BEGIN_POSE_ENERGIES_TABLE
MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0005.pdb
Ignored bad PDB record found on line 24195
label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd
fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega
fa_dun p_aa_pp yhh_planarity ref rama_prepro total
Ignored bad PDB record found on line 24196
weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA
Ignored bad PDB record found on line 24197
pose -9131.92 9785.71 5605.93 21.7837 353.384 -181.357 -1673.04 922.358
-97.6146 -320.122 -206.491 -137.073 0 35.9598 3210.14 -128.62 0.2484 276.746
1023.29 9359.32
1566 messages similar to the above omitted
Chain information for MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0005.pdb #5
---
Chain | Description
A B C | No description available
Computing secondary structure
[Repeated 3 time(s)]
> sequence chain #1/A,B,C#2/A,B,C#3/A,B,C#4/A,B,C#5/A,B,C
Alignment identifier is 1
> select #1/A-C:442-443 #2/A-C:442-443 #3/A-C:442-443 #4/A-C:442-443
> #5/A-C:442-443
405 atoms, 390 bonds, 30 residues, 5 models selected
> select #1/A-C:442-460 #2/A-C:442-460 #3/A-C:442-460 #4/A-C:442-460
> #5/A-C:442-460
4170 atoms, 4185 bonds, 285 residues, 5 models selected
1 [ID: 1] region 15 chains [363-381] RMSD: 0.000
> select clear
> close session
> open 3ntt
3ntt title:
Structural insights of Adeno-Associated virus 5. A gene therapy Vector for
Cystic Fibrosis [more info...]
Chain information for 3ntt #1
---
Chain | Description | UniProt
A | Capsid protein | Q9YIJ1_9VIRU 1-724
Non-standard residues in 3ntt #1
---
GOL — glycerol (glycerin; propane-1,2,3-triol)
NA — sodium ion
3ntt mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> close session
> open 6nz0
6nz0 title:
Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2 [more
info...]
Chain information for 6nz0 #1
---
Chain | Description | UniProt
A | Capsid protein VP1 | CAPSD_AAV2S 1-735
Z | Dyslexia-associated protein KIAA0319-like protein | K319L_HUMAN 311-597
Non-standard residues in 6nz0 #1
---
MG — magnesium ion
6nz0 mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
> sym #1 assembly 1
Made 60 graphical clones for 6nz0 assembly 1
> view
> sequence chain #1/Z
Alignment identifier is 1/Z
> color sel red
> select /Z:405-499
1456 atoms, 1480 bonds, 190 residues, 2 models selected
> color sel red
> select clear
> sequence chain #1/Z#2/Z
Alignment identifier is 1
> sequence chain #1/A#2/A
Alignment identifier is 2
> select #1/A:735 #2/A:735
16 atoms, 14 bonds, 2 residues, 2 models selected
> select #1/A:726-735 #2/A:726-735
168 atoms, 168 bonds, 20 residues, 2 models selected
Capsid Protein VP1 [ID: 2] region 2 chains [726-735] RMSD: 0.000
> color sel green
> select clear
> show #!2 surfaces
> hide #!2 surfaces
> close session
[deleted to fit within ticket limits]
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/structure.py", line 2832, in res_hover
_residue_mouse_hover(pick, session.logger)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/structure.py", line 2825, in _residue_mouse_hover
log.status("chain %s: %s" % (chain.chain_id, chain.description))
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/logger.py", line 522, in status
StatusLogger.status(self, msg, **kw)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/logger.py", line 220, in status
if l.status(msg, color, secondary) and getattr(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1149, in status
sbar.status(msg, color, secondary)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/structure.py", line 2832, in res_hover
_residue_mouse_hover(pick, session.logger)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/structure.py", line 2825, in _residue_mouse_hover
log.status("chain %s: %s" % (chain.chain_id, chain.description))
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/logger.py", line 522, in status
StatusLogger.status(self, msg, **kw)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/logger.py", line 220, in status
if l.status(msg, color, secondary) and getattr(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/gui.py", line 1149, in status
sbar.status(msg, color, secondary)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 104, in _expose_event
self.status(self._last_message, self._last_color)
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/ui/statusbar.py", line 170, in status
r.draw_background()
File
"/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/graphics/opengl.py", line 1264, in draw_background
GL.glClear(flags)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
Error processing trigger "mouse hover":
OpenGL.error.GLError: GLError(
err = 1286,
description = b'invalid framebuffer operation',
baseOperation = glClear,
cArguments = (16640,)
)
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
See log for complete Python traceback.
OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M5
OpenGL vendor: Apple
Python: 3.11.9
Locale: en_US.UTF-8
Qt version: PyQt6 6.10.2, Qt 6.10.0
Qt runtime version: 6.10.1
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac17,2
Model Number: MDE64LL/A
Chip: Apple M5
Total Number of Cores: 10 (4 performance and 6 efficiency)
Memory: 24 GB
System Firmware Version: 13822.61.10
OS Loader Version: 13822.61.10
Software:
System Software Overview:
System Version: macOS 26.2 (25C56)
Kernel Version: Darwin 25.2.0
Time since boot: 22 days, 2 hours, 29 minutes
Graphics/Displays:
Apple M5:
Chipset Model: Apple M5
Type: GPU
Bus: Built-In
Total Number of Cores: 10
Vendor: Apple (0x106b)
Metal Support: Metal 4
Displays:
DELL S2725QC:
Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
UI Looks like: 2560 x 1440 @ 120.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
accessible-pygments: 0.0.5
aiohappyeyeballs: 2.6.1
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.13.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.1
attrs: 26.1.0
babel: 2.18.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 4.1.2
bs4: 0.0.2
build: 1.3.0
certifi: 2025.7.14
cftime: 1.6.5
charset-normalizer: 3.4.7
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.2
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.67.1
ChimeraX-AtomicLibrary: 14.4
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4.1
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.4
ChimeraX-Cluster: 1.0
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.1
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.12.dev202604290127
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.2.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.8.2
ChimeraX-Label: 1.4
ChimeraX-LightingGUI: 1.0
ChimeraX-ListInfo: 1.3.1
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.2
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchAlign: 1.1
ChimeraX-MatchMaker: 2.4
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.2.0
ChimeraX-MDcrds: 2.19
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.8
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.23
ChimeraX-ModelPanel: 1.6.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.4
ChimeraX-OpenFold: 1.0
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.13
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.6
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.8.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.12
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.18
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SNFG: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.4
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.50.5
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.6.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.3.3
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.13.5
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.2.4
debugpy: 1.8.20
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.62.1
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.16.0
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.13
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 2.0.0
iniconfig: 2.3.0
ipykernel: 7.1.0
ipython: 9.9.0
ipython_pygments_lexers: 1.1.1
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.26.0
jsonschema-specifications: 2025.9.1
jupyter_client: 8.8.0
jupyter_core: 5.9.1
kiwisolver: 1.5.0
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.1
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.1
narwhals: 2.20.0
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
OpenMM: 8.4.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.6
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.9.6
plotly: 6.7.0
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.4.1
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.13.3
pydantic-settings: 2.14.0
pydantic_core: 2.46.3
pydata-sphinx-theme: 0.17.1
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.5.1
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.3.2
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.10.2
PyQt6-Qt6: 6.10.1
PyQt6-WebEngine-commercial: 6.10.0
PyQt6-WebEngine-Qt6: 6.10.1
PyQt6_sip: 13.10.3
pytest: 9.0.3
pytest-cov: 7.1.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.2
python-multipart: 0.0.27
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.1.0
rpds-py: 0.30.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8.3
Sphinx: 9.0.4
sphinx-autodoc-typehints: 3.6.1
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.4.1
stack-data: 0.6.3
starlette: 1.0.0
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 3.2.1
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.5
tqdm: 4.67.3
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
Unidecode: 1.4.0
urllib3: 2.6.3
uvicorn: 0.46.0
wcwidth: 0.6.0
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
yarl: 1.23.0
Change History (2)
comment:1 by , 18 hours ago
| Component: | Unassigned → Graphics |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → glClear: invalid framebuffer operation on statusbar expose |
comment:2 by , 9 hours ago
Note:
See TracTickets
for help on using tickets.
This is alarming. This ChimeraX issues an error message when the QOpenGLContext.makeCurrent() call leaves OpenGL in an error state and I clear the error. But there is no error message in the log. So it seems the OpenGL error state was set after the makeCurrent() call but before the glClear() call -- almost nothing happens between those two calls. But the OpenGL command buffer is asynchronous, so an error caused by the makeCurrent() may not appear until later. My best guess is that is what happened here.
I could put a check for OpenGL error in before the glClear() call but still the OpenGL error may not have been hit. I would have to call glFinish() to make sure I get the error. Maybe it is worth putting that in my makeCurrent() routine. But it might slow rendering of the graphics. It might not since a swap buffers presumably happened before which would effectively have done a glFinish().