![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 hours ago
Closed 5 hours ago
#20310 closed defect (duplicate)
Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | chimera-programmers | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-26.4.1-arm64-arm-64bit
ChimeraX Version: 1.12.dev202603022002 (2026-03-02 20:02:06 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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{
"uptime" : 22000,
"procRole" : "Background",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "Mac15,9",
"coalitionID" : 8141,
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"build" : "25E253",
"releaseType" : "User"
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"captureTime" : "2026-05-06 15:03:25.3194 -0400",
"codeSigningMonitor" : 2,
"incident" : "AE75646E-D3E8-4004-AC9A-915A65808715",
"pid" : 21214,
"translated" : false,
"cpuType" : "ARM-64",
"procLaunch" : "2026-05-06 15:01:58.1219 -0400",
"procStartAbsTime" : 533950411714,
"procExitAbsTime" : 536043083136,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
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"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "C250A671-49D3-4DBF-46B0-E9CD373356D3",
"appleIntelligenceStatus" : {"state":"available"},
"developerMode" : 1,
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRCuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkf\/f\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
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"wakeTime" : 3456,
"sleepWakeUUID" : "535F901D-64AA-4D3D-AF7D-CCADCE65534E",
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"vmRegionInfo" : "0x8 is not in any region. Bytes before following region: 4304617464
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
UNUSED SPACE AT START
--->
__TEXT 100934000-100938000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000008","rawCodes":[1,8],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000008"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":21214},
"vmregioninfo" : "0x8 is not in any region. Bytes before following region: 4304617464
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
UNUSED SPACE AT START
--->
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"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so",
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"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so",
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"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so",
"name" : "etree.cpython-311-darwin.so"
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"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/_elementpath.cpython-311-darwin.so",
"name" : "_elementpath.cpython-311-darwin.so"
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"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
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"uuid" : "e7a73008-0c09-31e3-9dd9-0c61652f0e85",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
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"size" : 528120,
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"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
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CG image 5104K 5
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ColorSync 96K 6
CoreAnimation 1456K 91
CoreGraphics 80K 5
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Stack Guard 56.0M 1
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shared memory 1520K 24
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Log:
UCSF ChimeraX version: 1.12.dev202603022002 (2026-03-02)
© 2016-2026 Regents of the University of California. All rights reserved.
> open "/Users/tj4488/Library/Mobile
> Documents/com~apple~CloudDocs/5_work_princeton/1_projects/1_IAA
> project/4_NC_reviewer comments/3_experiments/3.4_Chimera X analysis/2_iadDE
> compare to 7YLS.cxs"
Log from Tue Mar 3 19:47:08 2026UCSF ChimeraX version: 1.12.dev202603022002
(2026-03-02)
© 2016-2026 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/tj4488/Library/Mobile
> Documents/com~apple~CloudDocs/5_work_princeton/1_projects/1_IAA
> project/2_items/2_Protein and crystal
> structure/2_iadDE/1.3_structure/1.2_model1c_refine_001.pdb"
Summary of feedback from opening /Users/tj4488/Library/Mobile
Documents/com~apple~CloudDocs/5_work_princeton/1_projects/1_IAA
project/2_items/2_Protein and crystal
structure/2_iadDE/1.3_structure/1.2_model1c_refine_001.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK Date 2022-10-18 Time 14:28:29 EDT -0400 (1666117709.28 s)
Ignored bad PDB record found on line 2
REMARK PHENIX refinement
Ignored bad PDB record found on line 4
REMARK ****************** INPUT FILES AND LABELS
******************************
Ignored bad PDB record found on line 5
REMARK Reflections:
Ignored bad PDB record found on line 6
REMARK file name : jc12-4-fast_dp-truncated-unique.mtz
36 messages similar to the above omitted
Chain information for 1.2_model1c_refine_001.pdb #1
---
Chain | Description
A | No description available
B | No description available
Computing secondary structure
> open "/Users/tj4488/Library/Mobile
> Documents/com~apple~CloudDocs/5_work_princeton/1_projects/1_IAA
> project/2_items/2_Protein and crystal
> structure/2_iadDE/1.3_structure/2.1_model1h_refmac1_expanded.pdb"
2.1_model1h_refmac1_expanded.pdb title:
\--- [more info...]
Chain information for 2.1_model1h_refmac1_expanded.pdb #2
---
Chain | Description
A C E | No description available
B D F | No description available
Non-standard residues in 2.1_model1h_refmac1_expanded.pdb #2
---
EDO — (EDO)
FES — (FES)
ZN — (ZN)
315 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
> open "/Users/tj4488/Library/Mobile
> Documents/com~apple~CloudDocs/5_work_princeton/1_projects/1_IAA
> project/2_items/2_Protein and crystal
> structure/2_iadDE/1.3_structure/2.2_model1h_refmac1.pdb"
2.2_model1h_refmac1.pdb title:
\--- [more info...]
Chain information for 2.2_model1h_refmac1.pdb #3
---
Chain | Description
A | No description available
B | No description available
Non-standard residues in 2.2_model1h_refmac1.pdb #3
---
EDO — (EDO)
FES — (FES)
ZN — (ZN)
105 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.
Computing secondary structure
> hide #!1 models
> hide #!3 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!3 models
> close #1
> close #2
> open 7YLS.pdb
No such file/path: 7YLS.pdb
> open /Users/tj4488/Desktop/7YLS.cif
Summary of feedback from opening /Users/tj4488/Desktop/7YLS.cif
---
notes | Fetching CCD ACT from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/T/ACT/ACT.cif
Fetching CCD FE from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/E/FE/FE.cif
Fetching CCD FES from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/S/FES/FES.cif
Fetching CCD GOL from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/L/GOL/GOL.cif
7YLS.cif title:
Structure of a bacteria protein complex [more info...]
Chain information for 7YLS.cif #1
---
Chain | Description | UniProt
A | Aromatic-ring-hydroxylating dioxygenase beta subunit | C5CSP7_VARPS 1-162
B | Rieske (2Fe-2S) domain protein | C5CSP6_VARPS 1-437
Non-standard residues in 7YLS.cif #1
---
ACT — acetate ion
FE — Fe (III) ion
FES — FE2/S2 (inorganic) cluster
GOL — glycerol (glycerin; propane-1,2,3-triol)
4807 atoms have anisotropic B-factors. Depict anisotropic information with
Thermal Ellipsoids [start tool...] or the aniso command.
> matchmaker #3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7YLS.cif, chain B (#1) with 2.2_model1h_refmac1.pdb, chain A (#3),
sequence alignment score = 2230.9
RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs:
0.924)
> cartoon
> color cyan #1
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color orange #3
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> transparency 40 #3
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> cartoon
> color cyan #1
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> cartoon
> color cyan #1
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color orange #3
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> transparency 40 #3
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> cartoon
[Repeated 1 time(s)]
> color cyan cartoons #1
Expected ',' or a keyword
> color orange cartoons #3
Expected ',' or a keyword
> cartoon
> hide atoms
> color cyan #1
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> color orange #3
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> transparency 40 #3 target c
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> rmsd #3 to #1 perResidue true
Expected a keyword
> matchmaker #3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7YLS.cif, chain B (#1) with 2.2_model1h_refmac1.pdb, chain A (#3),
sequence alignment score = 2230.9
RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs:
0.924)
> rmsd #3 to #1
Number of atoms from first atom spec (5625) differs from number in second
(9866)
> select add #1
9866 atoms, 9516 bonds, 9 pseudobonds, 1072 residues, 2 models selected
> select add #3
15491 atoms, 14432 bonds, 18 pseudobonds, 2502 residues, 4 models selected
> select subtract #3
9866 atoms, 9516 bonds, 9 pseudobonds, 1072 residues, 2 models selected
> select subtract #1
Nothing selected
> color cyan #1
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> cartoon
> color cyan models #1
Expected ',' or a keyword
> toolshed show
> show target ab
> color #1 #00c8b3ff
> color #3 #f2a350ff
> transparency 50
> ui tool show Matchmaker
> matchmaker #!3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7YLS.cif, chain B (#1) with 2.2_model1h_refmac1.pdb, chain A (#3),
sequence alignment score = 2230.9
RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs:
0.924)
> morph #1 #2
Require at least 2 structures for morph
> morph #1 #3
Computed 51 frame morph #2
> coordset #2 1,51
> distance #1@ca #3@ca
Expected exactly two atoms and/or measurable objects (e.g. axes, planes), or
one or more measurable objects and one or more atoms, got 1188 atoms and 0
measurable objects
> transparency 50 #3
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> movie record
> movie encode /Users/tj4488/Desktop/movie1.mp4 framerate 25.0
Movie saved to /Users/tj4488/Desktop/movie1.mp4
> show #2 target ab
> select add #2
844 atoms, 838 bonds, 4 pseudobonds, 135 residues, 2 models selected
> close #2
No visible models!
> show #!1 models
> show #!3 models
> transparency cartoons 50 #3
Missing or invalid "percent" argument: Expected a number
> transparency #3 50 target c
> ui tool show Matchmaker
> matchmaker #!3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7YLS.cif, chain B (#1) with 2.2_model1h_refmac1.pdb, chain A (#3),
sequence alignment score = 2230.9
RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs:
0.924)
> show #!1 target m
> view #1 clip false
> select add #1
9866 atoms, 9516 bonds, 9 pseudobonds, 1072 residues, 2 models selected
> select add #3
15491 atoms, 14432 bonds, 18 pseudobonds, 2502 residues, 4 models selected
> transparency (#!1,3 & sel) 70
> select subtract #3
9866 atoms, 9516 bonds, 9 pseudobonds, 1072 residues, 2 models selected
> select subtract #1
Nothing selected
> rmsd #1 to #3 perResidue true
Expected a keyword
> rmsd #1 to #3 perResidue
Expected a keyword
> align #1 toAtoms #3
Unequal number of atoms to pair, 9866 and 5625
> matchmaker #1 to #3
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 2.2_model1h_refmac1.pdb, chain A (#3) with 7YLS.cif, chain B (#1),
sequence alignment score = 2230.9
RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs:
0.924)
> help matchmaker
> mmaker #3/A to #1/B showAlignment true
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7YLS.cif, chain B (#1) with 2.2_model1h_refmac1.pdb, chain A (#3),
sequence alignment score = 2230.9
Alignment identifier is 1
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1
Hiding conservation header for alignment 1
Chains used in RMSD evaluation for alignment 1: 7YLS.cif #1/B,
2.2_model1h_refmac1.pdb #3/A
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1
RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs:
0.924)
> select #1/B:234
12 atoms, 11 bonds, 1 residue, 1 model selected
> select #1/B:234-240
104 atoms, 105 bonds, 7 residues, 1 model selected
> select #1/B:234 #3/A:234
20 atoms, 18 bonds, 2 residues, 2 models selected
> select #1/B:226
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #1/B:226-300
1155 atoms, 1175 bonds, 75 residues, 1 model selected
> hide atoms
> show cartoons
> select #3/A:234
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #3/A:234-240
57 atoms, 58 bonds, 7 residues, 1 model selected
> select #1/B:245 #3/A:245
23 atoms, 21 bonds, 2 residues, 2 models selected
> mmaker #3/B to #1/A showAlignment true
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 7YLS.cif, chain A (#1) with 2.2_model1h_refmac1.pdb, chain B (#3),
sequence alignment score = 839.4
Alignment identifier is 2
Showing conservation header ("seq_conservation" residue attribute) for
alignment 2
Hiding conservation header for alignment 2
Chains used in RMSD evaluation for alignment 2: 7YLS.cif #1/A,
2.2_model1h_refmac1.pdb #3/B
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2
RMSD between 158 pruned atom pairs is 0.190 angstroms; (across all 158 pairs:
0.190)
> select #1/B:280 #3/A:280
22 atoms, 21 bonds, 2 residues, 2 models selected
> select #1/B:280
17 atoms, 17 bonds, 1 residue, 1 model selected
> select #1/B:280-292
186 atoms, 189 bonds, 13 residues, 1 model selected
> save "/Users/tj4488/Desktop/iadDE compare to 7YLS.cxs"
——— End of log from Tue Mar 3 19:47:08 2026 ———
> view name session-start
opened ChimeraX session
OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M3 Max
OpenGL vendor: Apple
Python: 3.11.9
Locale: en_US.UTF-8
Qt version: PySide6 6.10.1, Qt 6.10.1
Qt runtime version: 6.10.1
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac15,9
Model Number: Z1AF001AGLL/A
Chip: Apple M3 Max
Total Number of Cores: 16 (12 Performance and 4 Efficiency)
Memory: 64 GB
System Firmware Version: 18000.101.7
OS Loader Version: 18000.101.7
Software:
System Software Overview:
System Version: macOS 26.4.1 (25E253)
Kernel Version: Darwin 25.4.0
Time since boot: 2 hours, 49 minutes
Graphics/Displays:
Apple M3 Max:
Chipset Model: Apple M3 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 40
Vendor: Apple (0x106b)
Metal Support: Metal 4
Displays:
DELL U2412M:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
accessible-pygments: 0.0.5
aiohappyeyeballs: 2.6.1
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.12.1
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.1
attrs: 25.4.0
babel: 2.18.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 4.1.1
build: 1.3.0
certifi: 2025.7.14
cftime: 1.6.5
charset-normalizer: 3.4.4
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.2
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.64.1
ChimeraX-AtomicLibrary: 14.2.3
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4.1
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.1
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.12.dev202603022002
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.2
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.8.2
ChimeraX-Label: 1.3
ChimeraX-LightingGUI: 1.0
ChimeraX-ListInfo: 1.3.1
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.2
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.2.0
ChimeraX-MDcrds: 2.18
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.5
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.23
ChimeraX-ModelPanel: 1.6.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.4
ChimeraX-OpenFold: 1.0
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.12
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.5.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.8
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.12
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.5
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SNFG: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.50.3
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.6.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.3.1
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.13.4
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.2.4
debugpy: 1.8.20
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.61.1
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.15.1
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.11
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.3.0
ipykernel: 7.1.0
ipython: 9.9.0
ipython_pygments_lexers: 1.1.1
ipywidgets: 8.1.8
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.26.0
jsonschema-specifications: 2025.9.1
jupyter_client: 8.8.0
jupyter_core: 5.9.1
jupyterlab_widgets: 3.0.16
kiwisolver: 1.4.9
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.1
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.1
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
OpenMM: 8.4.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.6
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.9.2
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.4.1
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.12.5
pydantic-settings: 2.13.1
pydantic_core: 2.41.5
pydata-sphinx-theme: 0.16.1
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.5.0
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.3.2
pyproject_hooks: 1.2.0
PySide6: 6.10.1
PySide6_Addons: 6.10.1
PySide6_Essentials: 6.10.1
pytest: 9.0.2
pytest-cov: 7.0.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.2
python-multipart: 0.0.22
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2.1
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.1.0
rpds-py: 0.30.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
shiboken6: 6.10.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8.3
Sphinx: 9.0.4
sphinx-autodoc-typehints: 3.6.1
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.3.2
stack-data: 0.6.3
starlette: 0.52.1
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.4
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
urllib3: 2.6.3
uvicorn: 0.41.0
wcwidth: 0.6.0
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.15
yarl: 1.23.0
Change History (2)
comment:1 by , 5 hours ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged |
comment:2 by , 5 hours ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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