The following bug report has been submitted:
Platform: macOS-26.5.1-arm64-arm-64bit
ChimeraX Version: 1.12 (2026-06-12 03:42:34 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Thread 0x000000030704f000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000306043000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000305037000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 948 in wait
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000030402b000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000030301f000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000302013000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000301007000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017f54f000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017e543000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017d537000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017c52b000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017b51f000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017a513000 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Current thread 0x00000001fbd4de80 (most recent call first):
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 424 in event_loop
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1064 in init
File "/private/var/folders/7r/fq0hzx4n4t3bd81kj0d6y4280000gn/T/AppTranslocation/E1427E4F-0ABB-4E36-9ED8-5067CC9BB829/d/ChimeraX-1.12.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1229 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, psutil._psutil_osx, psutil._psutil_posix, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.pdb_lib._load_libs, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, PIL._imaging, PIL._imagingmath (total: 48)
{"app_name":"ChimeraX","timestamp":"2026-06-18 10:57:52.00 +0800","app_version":"","slice_uuid":"544eb719-b770-3601-b425-1ceb237637ac","build_version":"","platform":1,"share_with_app_devs":0,"is_first_party":1,"bug_type":"309","os_version":"macOS 26.5.1 (25F80)","roots_installed":0,"incident_id":"B07E7787-E830-4E7B-ACB5-B465A361D70C","name":"ChimeraX"}
{
"uptime" : 7700,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac17,3",
"coalitionID" : 1979,
"osVersion" : {
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"build" : "25F80",
"releaseType" : "User"
},
"captureTime" : "2026-06-18 10:57:39.7585 +0800",
"codeSigningMonitor" : 2,
"incident" : "B07E7787-E830-4E7B-ACB5-B465A361D70C",
"pid" : 1783,
"translated" : false,
"cpuType" : "ARM-64",
"procLaunch" : "2026-06-17 17:16:45.3217 +0800",
"procStartAbsTime" : 127219518443,
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__GLSLBUILTINS 5176K 1
__LINKEDIT 575.9M 4
__OBJC_RO 79.1M 1
__OBJC_RW 2599K 1
__TEXT 1.2G 1055
__TPRO_CONST 128K 2
dyld private memory 3504K 29
mapped file 628.0M 556
page table in kernel 1218K 1
shared memory 5680K 41
=========== ======= =======
TOTAL 3.7G 6633
TOTAL, minus reserved VM space 3.5G 6633
",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "2abead620c3aaa839317eaf94a0e9054a520bbcc",
"bug_type" : "309",
"roots_installed" : 0,
"trmStatus" : 1,
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "64628732bf2f5257dedc8988",
"factorPackIds" : [
],
"deploymentId" : 240000001
},
{
"rolloutId" : "61675b89201f677a9a4cbd65",
"factorPackIds" : [
"65a855f5f087695cfac03d1f"
],
"deploymentId" : 240000275
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.12 (2026-06-12)
© 2016-2026 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/sunmingxin/Downloads/fold_bsctv_v2/fold_bsctv_v2_model_0.cif
Chain information for fold_bsctv_v2_model_0.cif #1
---
Chain | Description
A | .
Computing secondary structure
> color bfactor palette alphafold
1056 atoms, 126 residues, atom bfactor range 14.7 to 98
> movie record
> turn y 3 120
> wait 120
> movie encode /Users/sunmingxin/Desktop/V2_rotation.mp4
Movie saved to /Users/sunmingxin/Desktop/V2_rotation.mp4
> set bgColor white
> set bgColor #ffffff00
> movie record
> turn y 3 120
> movie encode /Users/sunmingxin/Desktop/V2_rotation_white.mp4
Movie saved to /Users/sunmingxin/Desktop/V2_rotation_white.mp4
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.12 (2026-06-12)
© 2016-2026 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M5
OpenGL vendor: Apple
Python: 3.11.9
Locale: en_US.UTF-8
Qt version: PyQt6 6.10.2, Qt 6.10.0
Qt runtime version: 6.10.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac17,3
Model Number: MDHA4CH/A
Chip: Apple M5
Total Number of Cores: 10 (4 Super and 6 Efficiency)
Memory: 16 GB
System Firmware Version: 18000.120.36
OS Loader Version: 18000.120.36
Software:
System Software Overview:
System Version: macOS 26.5.1 (25F80)
Kernel Version: Darwin 25.5.0
Time since boot: 1天41分钟
Graphics/Displays:
Apple M5:
Chipset Model: Apple M5
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 4
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
accessible-pygments: 0.0.5
aiohappyeyeballs: 2.6.2
aiohttp: 3.13.4
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.13.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.1
attrs: 26.1.0
babel: 2.18.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 4.4.3
bs4: 0.0.2
build: 1.3.0
certifi: 2025.7.14
cftime: 1.6.5
charset-normalizer: 3.4.7
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.2
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.67.1
ChimeraX-AtomicLibrary: 14.4
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4.1
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.4
ChimeraX-Cluster: 1.0
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.1
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.12
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.2.2
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.8.2
ChimeraX-Label: 1.5
ChimeraX-LightingGUI: 1.0
ChimeraX-ListInfo: 1.3.1
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.3
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchAlign: 1.2
ChimeraX-MatchMaker: 2.4.1
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.2.0
ChimeraX-MDcrds: 2.19
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.9
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.23
ChimeraX-ModelPanel: 1.6.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.4
ChimeraX-OpenFold: 1.0
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.13
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.6
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.8.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.12
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.18
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SNFG: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.4
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.50.8
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.6.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.4.1
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.14.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.2.4
debugpy: 1.8.21
decorator: 5.3.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.63.0
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.16.0
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.18
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 2.0.0
iniconfig: 2.3.0
ipykernel: 7.1.0
ipython: 9.9.0
ipython_pygments_lexers: 1.1.1
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.26.0
jsonschema-specifications: 2025.9.1
jupyter_client: 8.8.0
jupyter_core: 5.9.1
kiwisolver: 1.5.0
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.2
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.1
narwhals: 2.22.1
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
OpenMM: 8.4.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.7
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.10.0
plotly: 6.8.0
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.5.2
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.13.4
pydantic-settings: 2.14.1
pydantic_core: 2.46.4
pydata-sphinx-theme: 0.18.0
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.5.1
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.3.2
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.10.2
PyQt6-Qt6: 6.10.2
PyQt6-WebEngine-commercial: 6.10.0
PyQt6-WebEngine-Qt6: 6.10.2
PyQt6_sip: 13.10.3
pytest: 9.0.3
pytest-cov: 7.1.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.2
python-multipart: 0.0.32
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.1.0
rpds-py: 2026.5.1
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.1.1
sortedcontainers: 2.4.0
soupsieve: 2.8.4
Sphinx: 9.0.4
sphinx-autodoc-typehints: 3.6.1
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.4.4
stack-data: 0.6.3
starlette: 1.3.0
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 3.2.1
threadpoolctl: 3.6.0
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.7
tqdm: 4.68.2
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
Unidecode: 1.4.0
urllib3: 2.7.0
uvicorn: 0.49.0
wcwidth: 0.8.1
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
yarl: 1.24.2
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Looks like ChimeraX was run straight from the .dmg instead of copying to the local disk. Maybe this kind of crash happens if you eject the .dmg image while ChimeraX is starting.