Multiple consecutive Find Cavities: object of type ShortASLWidget has been deleted

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22631
ChimeraX Version: 1.13.dev202607020135 (2026-07-02 01:35:19 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.13.dev202607020135 (2026-07-02)  
© 2016-2026 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:/Users/challeppa/Ifeoluwapo/h-ENT1 dock analysis ChimeraX.pdb"

Summary of feedback from opening C:/Users/challeppa/Ifeoluwapo/h-ENT1 dock
analysis ChimeraX.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK BIOVIA PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2026-07-07T11:07:35Z  
  
Start residue of secondary structure not found: HELIX 1 1 ARG A 10 LYS A 12 1
3  
Start residue of secondary structure not found: HELIX 2 2 ALA A 13 LEU A 27 1
15  
Start residue of secondary structure not found: HELIX 3 3 PRO A 28 THR A 34 1
7  
Start residue of secondary structure not found: HELIX 4 4 THR A 36 ASP A 44 1
9  
Start residue of secondary structure not found: HELIX 5 5 PHE A 80 LEU A 102 1
23  
1955 messages similar to the above omitted  
  
Chain information for h-ENT1 dock analysis ChimeraX.pdb  
---  
Chain | Description  
1.1/A | No description available  
1.1/B | No description available  
  

> select #1.1/A:7-450

5536 atoms, 5612 bonds, 3 pseudobonds, 365 residues, 2 models selected  

> sequence chain #1.1/A

Alignment identifier is 1.1/A  

> close

> open C:/Users/challeppa/Ifeoluwapo/h-ENT1.dsv

Unrecognized file suffix '.dsv'  

> open C:/Users/challeppa/Ifeoluwapo/h-ENT1.dsv

Unrecognized file suffix '.dsv'  

> open C:/Users/challeppa/Ifeoluwapo/h-ENT1.pdb format zdock

Summary of feedback from opening C:/Users/challeppa/Ifeoluwapo/h-ENT1.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK BIOVIA PDB file  
  
Ignored bad PDB record found on line 2  
  
  
Ignored bad PDB record found on line 3  
REMARK Created: 2026-07-07T11:07:35Z  
  
Ignored bad PDB record found on line 4  
  
  
Ignored bad PDB record found on line 5543  
  
  
96 messages similar to the above omitted  
  
Chain information for h-ENT1.pdb #1  
---  
Chain | Description  
A | No description available  
B | No description available  
  
Computing secondary structure  

> ui tool show "Find Cavities"

> kvfinder

35 cavities found for h-ENT1.pdb #1  
h-ENT1.pdb Cavities  
---  
ID |  | Volume | Area | Points | Maximum  
Depth | Average  
Depth  
1.2.2 |  | 1463.4 | 993.94 | 6775 | 18 | 6.87  
1.2.5 |  | 1457.14 | 1006.04 | 6746 | 17.53 | 6.95  
1.2.15 |  | 1370.3 | 875.78 | 6344 | 12.06 | 2.71  
1.2.26 |  | 97.63 | 170.44 | 452 | 0 | 0  
1.2.27 |  | 69.34 | 75.44 | 321 | 3.7 | 1.18  
1.2.32 |  | 62.21 | 68.39 | 288 | 1.7 | 0.45  
1.2.7 |  | 57.24 | 55.29 | 265 | 2.16 | 0.64  
1.2.20 |  | 45.58 | 71.39 | 211 | 3.55 | 1.48  
1.2.3 |  | 41.9 | 60.51 | 194 | 1.8 | 0.5  
1.2.1 |  | 38.66 | 59.31 | 179 | 0 | 0  
1.2.34 |  | 33.05 | 53.02 | 153 | 0 | 0  
1.2.6 |  | 28.94 | 32.16 | 134 | 1.9 | 0.49  
1.2.28 |  | 28.73 | 45.58 | 133 | 3.6 | 1.67  
1.2.19 |  | 27.43 | 45.23 | 127 | 0 | 0  
1.2.4 |  | 27.22 | 36.03 | 126 | 1.7 | 0.45  
1.2.22 |  | 27.22 | 46.67 | 126 | 0 | 0  
1.2.35 |  | 26.14 | 30.78 | 121 | 1.8 | 0.65  
1.2.17 |  | 24.62 | 45.55 | 114 | 3.55 | 1.72  
1.2.12 |  | 23.54 | 37.11 | 109 | 0.85 | 0.27  
1.2.13 |  | 22.03 | 40.03 | 102 | 0 | 0  
1.2.21 |  | 21.82 | 40.63 | 101 | 0 | 0  
1.2.30 |  | 21.82 | 40.63 | 101 | 0 | 0  
1.2.8 |  | 21.38 | 37.45 | 99 | 0 | 0  
1.2.23 |  | 21.17 | 39.07 | 98 | 0 | 0  
1.2.16 |  | 19.87 | 36.19 | 92 | 0 | 0  
1.2.29 |  | 17.93 | 29.92 | 83 | 2.16 | 0.85  
1.2.14 |  | 16.85 | 32.3 | 78 | 0 | 0  
1.2.31 |  | 15.77 | 28.41 | 73 | 1.34 | 0.38  
1.2.24 |  | 14.9 | 26.03 | 69 | 1.7 | 0.53  
1.2.9 |  | 14.47 | 22.59 | 67 | 1.34 | 0.4  
1.2.10 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.18 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.25 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.33 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.11 |  | 11.23 | 25.38 | 52 | 1.9 | 0.9  
  

> kvfinder

35 cavities found for h-ENT1.pdb #1  
h-ENT1.pdb Cavities  
---  
ID |  | Volume | Area | Points | Maximum  
Depth | Average  
Depth  
1.2.2 |  | 1463.4 | 993.94 | 6775 | 18 | 6.87  
1.2.5 |  | 1457.14 | 1006.04 | 6746 | 17.53 | 6.95  
1.2.15 |  | 1370.3 | 875.78 | 6344 | 12.06 | 2.71  
1.2.26 |  | 97.63 | 170.44 | 452 | 0 | 0  
1.2.27 |  | 69.34 | 75.44 | 321 | 3.7 | 1.18  
1.2.32 |  | 62.21 | 68.39 | 288 | 1.7 | 0.45  
1.2.7 |  | 57.24 | 55.29 | 265 | 2.16 | 0.64  
1.2.20 |  | 45.58 | 71.39 | 211 | 3.55 | 1.48  
1.2.3 |  | 41.9 | 60.51 | 194 | 1.8 | 0.5  
1.2.1 |  | 38.66 | 59.31 | 179 | 0 | 0  
1.2.34 |  | 33.05 | 53.02 | 153 | 0 | 0  
1.2.6 |  | 28.94 | 32.16 | 134 | 1.9 | 0.49  
1.2.28 |  | 28.73 | 45.58 | 133 | 3.6 | 1.67  
1.2.19 |  | 27.43 | 45.23 | 127 | 0 | 0  
1.2.4 |  | 27.22 | 36.03 | 126 | 1.7 | 0.45  
1.2.22 |  | 27.22 | 46.67 | 126 | 0 | 0  
1.2.35 |  | 26.14 | 30.78 | 121 | 1.8 | 0.65  
1.2.17 |  | 24.62 | 45.55 | 114 | 3.55 | 1.72  
1.2.12 |  | 23.54 | 37.11 | 109 | 0.85 | 0.27  
1.2.13 |  | 22.03 | 40.03 | 102 | 0 | 0  
1.2.21 |  | 21.82 | 40.63 | 101 | 0 | 0  
1.2.30 |  | 21.82 | 40.63 | 101 | 0 | 0  
1.2.8 |  | 21.38 | 37.45 | 99 | 0 | 0  
1.2.23 |  | 21.17 | 39.07 | 98 | 0 | 0  
1.2.16 |  | 19.87 | 36.19 | 92 | 0 | 0  
1.2.29 |  | 17.93 | 29.92 | 83 | 2.16 | 0.85  
1.2.14 |  | 16.85 | 32.3 | 78 | 0 | 0  
1.2.31 |  | 15.77 | 28.41 | 73 | 1.34 | 0.38  
1.2.24 |  | 14.9 | 26.03 | 69 | 1.7 | 0.53  
1.2.9 |  | 14.47 | 22.59 | 67 | 1.34 | 0.4  
1.2.10 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.18 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.25 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.33 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.11 |  | 11.23 | 25.38 | 52 | 1.9 | 0.9  
  

> kvfinder

35 cavities found for h-ENT1.pdb #1  
h-ENT1.pdb Cavities  
---  
ID |  | Volume | Area | Points | Maximum  
Depth | Average  
Depth  
1.2.2 |  | 1463.4 | 993.94 | 6775 | 18 | 6.87  
1.2.5 |  | 1457.14 | 1006.04 | 6746 | 17.53 | 6.95  
1.2.15 |  | 1370.3 | 875.78 | 6344 | 12.06 | 2.71  
1.2.26 |  | 97.63 | 170.44 | 452 | 0 | 0  
1.2.27 |  | 69.34 | 75.44 | 321 | 3.7 | 1.18  
1.2.32 |  | 62.21 | 68.39 | 288 | 1.7 | 0.45  
1.2.7 |  | 57.24 | 55.29 | 265 | 2.16 | 0.64  
1.2.20 |  | 45.58 | 71.39 | 211 | 3.55 | 1.48  
1.2.3 |  | 41.9 | 60.51 | 194 | 1.8 | 0.5  
1.2.1 |  | 38.66 | 59.31 | 179 | 0 | 0  
1.2.34 |  | 33.05 | 53.02 | 153 | 0 | 0  
1.2.6 |  | 28.94 | 32.16 | 134 | 1.9 | 0.49  
1.2.28 |  | 28.73 | 45.58 | 133 | 3.6 | 1.67  
1.2.19 |  | 27.43 | 45.23 | 127 | 0 | 0  
1.2.4 |  | 27.22 | 36.03 | 126 | 1.7 | 0.45  
1.2.22 |  | 27.22 | 46.67 | 126 | 0 | 0  
1.2.35 |  | 26.14 | 30.78 | 121 | 1.8 | 0.65  
1.2.17 |  | 24.62 | 45.55 | 114 | 3.55 | 1.72  
1.2.12 |  | 23.54 | 37.11 | 109 | 0.85 | 0.27  
1.2.13 |  | 22.03 | 40.03 | 102 | 0 | 0  
1.2.21 |  | 21.82 | 40.63 | 101 | 0 | 0  
1.2.30 |  | 21.82 | 40.63 | 101 | 0 | 0  
1.2.8 |  | 21.38 | 37.45 | 99 | 0 | 0  
1.2.23 |  | 21.17 | 39.07 | 98 | 0 | 0  
1.2.16 |  | 19.87 | 36.19 | 92 | 0 | 0  
1.2.29 |  | 17.93 | 29.92 | 83 | 2.16 | 0.85  
1.2.14 |  | 16.85 | 32.3 | 78 | 0 | 0  
1.2.31 |  | 15.77 | 28.41 | 73 | 1.34 | 0.38  
1.2.24 |  | 14.9 | 26.03 | 69 | 1.7 | 0.53  
1.2.9 |  | 14.47 | 22.59 | 67 | 1.34 | 0.4  
1.2.10 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.18 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.25 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.33 |  | 12.31 | 29.54 | 57 | 0 | 0  
1.2.11 |  | 11.23 | 25.38 | 52 | 1.9 | 0.9  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.13.dev202607020135\bin\Lib\site-
packages\chimerax\kvfinder\tool.py", line 147, in find_cavities  
structures = self.structures_list.value  
^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.13.dev202607020135\bin\Lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 149, in value  
return self.get_value()  
^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.13.dev202607020135\bin\Lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 152, in get_value  
self._sleep_check()  
File "C:\Program Files\ChimeraX 1.13.dev202607020135\bin\Lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 105, in _sleep_check  
if not self._handlers and not hasattr(self, '_recursion'):  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
RuntimeError: wrapped C/C++ object of type ShortASLWidget has been deleted  
  
RuntimeError: wrapped C/C++ object of type ShortASLWidget has been deleted  
  
File "C:\Program Files\ChimeraX 1.13.dev202607020135\bin\Lib\site-
packages\chimerax\ui\widgets\item_chooser.py", line 105, in _sleep_check  
if not self._handlers and not hasattr(self, '_recursion'):  
^^^^^^^^^^^^^^^^^^^^^^^^^^^  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 595.79
OpenGL renderer: NVIDIA RTX A4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.9
Locale: en_US.cp1252
Qt version: PyQt6 6.11.0, Qt 6.11.0
Qt runtime version: 6.11.1
Qt platform: windows

Manufacturer: HP
Model: HP Z8 G4 Workstation
OS: Microsoft Windows 11 Pro for Workstations (Build 22631.6199)
Memory: 137,127,550,976
MaxProcessMemory: 137,438,953,344
CPU: 24 Intel(R) Xeon(R) Gold 6136 CPU @ 3.00GHz
OSLanguage: en-US

Installed Packages:
    accessible-pygments: 0.0.5
    aiohappyeyeballs: 2.7.1
    aiohttp: 3.13.4
    aiosignal: 1.4.0
    alabaster: 1.0.0
    annotated-types: 0.7.0
    anyio: 4.14.1
    appdirs: 1.4.4
    asttokens: 3.0.1
    attrs: 26.1.0
    babel: 2.18.0
    beautifulsoup4: 4.13.5
    blockdiag: 3.0.0
    blosc2: 4.7.0
    build: 1.5.0
    certifi: 2026.6.17
    cftime: 1.6.5
    charset-normalizer: 3.4.7
    ChimeraX-AddCharge: 1.5.20
    ChimeraX-AddH: 2.3.1
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.2
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 3.2.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Animations: 1.0
    ChimeraX-Aniso: 1.3.2
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.70
    ChimeraX-AtomicLibrary: 14.4.1
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.1
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.6.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4.1
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.4
    ChimeraX-Cluster: 1.0
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3.1
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.13.dev202607020135
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.6
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.2.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.4
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.4
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.8.3
    ChimeraX-Label: 1.5
    ChimeraX-LightingGUI: 1.0
    ChimeraX-ListInfo: 1.3.1
    ChimeraX-Log: 1.2.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.3
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchAlign: 1.2.1
    ChimeraX-MatchMaker: 2.4.1
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    ChimeraX-MCPServer: 0.2.0
    ChimeraX-MDcrds: 2.19.1
    ChimeraX-Meeting: 1.0.1
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    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.17
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.24
    ChimeraX-ModelPanel: 1.6.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0.1
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.16.2
    ChimeraX-OpenFold: 1.0
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.13
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.5
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.4
    ChimeraX-ProfileGrids: 1.10.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.8.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.3
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.2
    ChimeraX-Scenes: 0.3.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.12
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.19.1
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SNFG: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.20
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.4
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.53
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDock: 1.6.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    click: 8.4.2
    colorama: 0.4.6
    comm: 0.2.3
    comtypes: 1.4.11
    contourpy: 1.3.3
    coverage: 7.14.3
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.2.4
    debugpy: 1.8.21
    decorator: 5.3.1
    docutils: 0.21.2
    executing: 2.2.1
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    h11: 0.16.0
    h5py: 3.16.0
    html2text: 2025.4.15
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    imagecodecs: 2024.6.1
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    ipykernel: 7.3.0
    ipython: 9.14.1
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    mcp: 1.18.0
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    ndindex: 1.10.1
    nest-asyncio2: 1.7.2
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    networkx: 3.3
    numexpr: 2.14.1
    numpy: 2.4.6
    numpy: 1.26.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.4.0
    OpenMM-CUDA-12: 8.4.0
    openvr: 1.26.701
    packaging: 25.0
    ParmEd: 4.2.2
    parso: 0.8.7
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 11.3.0
    pip: 26.1.2
    pkginfo: 1.12.1.2
    platformdirs: 4.10.0
    plotly: 6.8.0
    pluggy: 1.6.0
    prompt_toolkit: 3.0.52
    propcache: 0.5.2
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
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    pydantic-settings: 2.14.2
    pydantic_core: 2.46.4
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    Pygments: 2.18.0
    pyKVFinder: 0.9.3
    pynmrstar: 3.5.1
    PyOpenGL: 3.1.10
    PyOpenGL-accelerate: 3.1.10
    pyopenxr: 1.1.4501
    pyparsing: 3.3.2
    pyproject_hooks: 1.2.0
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    PyQt6-Qt6: 6.11.1
    PyQt6-WebEngine: 6.11.0
    PyQt6-WebEngine-Qt6: 6.11.1
    PyQt6_sip: 13.11.1
    pytest: 9.1.1
    pytest-cov: 7.1.0
    python-dateutil: 2.9.0.post0
    python-dotenv: 1.2.2
    python-multipart: 0.0.32
    pywin32: 311
    pyzmq: 27.1.0
    qtconsole: 5.7.2
    QtPy: 2.4.3
    qtshim: 1.2.2
    RandomWords: 0.4.0
    referencing: 0.37.0
    requests: 2.32.5
    rich: 15.0.0
    roman-numerals: 4.1.0
    rpds-py: 2026.6.3
    scipy: 1.14.0
    setuptools: 82.0.1
    sfftk-rw: 0.8.1
    six: 1.17.0
    snowballstemmer: 3.1.1
    sortedcontainers: 2.4.0
    soupsieve: 2.8.4
    Sphinx: 9.0.4
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    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
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    sphinxcontrib-serializinghtml: 2.0.0
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    stack-data: 0.6.3
    starlette: 1.3.1
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    threadpoolctl: 3.6.0
    tifffile: 2025.3.13
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    traitlets: 5.15.1
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    typing_extensions: 4.15.0
    urllib3: 2.7.0
    uvicorn: 0.49.0
    wcwidth: 0.8.2
    webcolors: 24.11.1
    wheel: 0.47.0
    wheel-filename: 1.4.2
    WMI: 1.5.1
    yarl: 1.24.2