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Opened 4 hours ago
#20768 new defect
ChimeraX bug report submission
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Unassigned | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | ||
| Project: |
Description
The following bug report has been submitted:
Platform: macOS-15.7.7-arm64-arm-64bit
ChimeraX Version: 1.9rc202410310525 (2024-10-31 05:25:41 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001fc8d22c0 (most recent call first):
File "/Applications/ChimeraX-1.9-rc2024.10.31.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9-rc2024.10.31.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9-rc2024.10.31.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, lxml._elementpath, lxml.etree, chimerax.pdb_lib._load_libs, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, PIL._imagingmath (total: 58)
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{
"uptime" : 68000,
"procRole" : "Foreground",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "Mac15,12",
"coalitionID" : 6875,
"osVersion" : {
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"build" : "24G720",
"releaseType" : "User"
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"captureTime" : "2026-07-17 11:45:03.3600 +0100",
"codeSigningMonitor" : 1,
"incident" : "91854E71-9002-4F34-BD8E-81B849DDD240",
"pid" : 40471,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2026-07-17 11:38:45.3226 +0100",
"procStartAbsTime" : 1638187402914,
"procExitAbsTime" : 1647257415536,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9-rc2024.10.31.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "1BAC394B-317C-E30E-4982-EF83CFC24863",
"appleIntelligenceStatus" : {"reasons":["siriAssetIsNotReady","assetIsNotReady","notOptedIn"],"state":"unavailable"},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRm+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkZDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
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"wakeTime" : 5873,
"sleepWakeUUID" : "0630A552-A0EC-4B43-A412-1428FD5001C1",
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"exception" : {"codes":"0x0000000000000001, 0x0000000000000003","rawCodes":[1,3],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000003"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":40471},
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===== Log before crash start =====
UCSF ChimeraX version: 1.9rc202410310525 (2024-10-31)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/u5631158/Desktop/Anne Straube Placement/KIF1C mutations
> chimera.cxs" format session
opened ChimeraX session
Drag select of 23 residues
> select clear
> select /N
233 atoms, 234 bonds, 28 residues, 1 model selected
> select /M
587 atoms, 597 bonds, 80 residues, 1 model selected
> select /G
587 atoms, 597 bonds, 80 residues, 1 model selected
> select /F
360 atoms, 362 bonds, 43 residues, 1 model selected
> select /G
587 atoms, 597 bonds, 80 residues, 1 model selected
> select /F
360 atoms, 362 bonds, 43 residues, 1 model selected
> select /I
2530 atoms, 2571 bonds, 328 residues, 1 model selected
> select /H
233 atoms, 234 bonds, 28 residues, 1 model selected
> color sel #333333ff
> save "/Users/u5631158/Desktop/Anne Straube Placement/KIF1C mutations
> chimera.cxs"
> select #1/A, I: 17, 434, 702, 909, 996, 1017
10 atoms, 8 bonds, 2 residues, 1 model selected
> select clear
Drag select of 10 residues
> select #1: 17, 434, 702, 909, 996, 1017
78 atoms, 68 bonds, 12 residues, 1 model selected
> color sel forest green
> color sel #3d423cff
> color sel #3c423cff
> color sel #36423aff
> color sel #354239ff
> color sel #324237ff
> color sel #314236ff
> color sel #304236ff
> color sel #304235ff
> color sel #2f4235ff
> color sel #2d4233ff
> color sel #2c4232ff
> color sel #29422eff
> color sel #28422dff
> color sel #26422aff
> color sel #254229ff
> color sel #244228ff
> color sel #234226ff
> color sel #224225ff
> color sel #214224ff
> color sel #204223ff
> color sel #1f4222ff
> color sel #1e4220ff
> color sel #1c421fff
> color sel #1b421eff
> color sel #1b421fff
> color sel #1c421fff
> color sel #1d4220ff
> color sel #1e4220ff
> color sel #1e4221ff
> color sel #1f4221ff
> color sel #1f4222ff
> color sel #204223ff
> color sel #214224ff
> color sel #214225ff
> color sel #224225ff
> color sel #224226ff
> color sel #234227ff
> color sel #234228ff
> color sel #244229ff
> color sel #25422bff
> color sel #26422cff
> color sel #27422eff
> color sel #28422fff
> color sel #27422fff
> color sel #274230ff
> color sel #264230ff
> color sel #26422fff
> color sel #25422eff
> color sel #23422dff
> color sel #22422cff
> color sel #20422aff
> color sel #204229ff
> color sel #1f4228ff
> color sel #1e4227ff
> color sel #1e4226ff
> color sel #1e4225ff
> color sel #1e4223ff
> color sel #1e4221ff
> color sel #1e421fff
> color sel #1e421eff
> color sel #1f421eff
> color sel #20421eff
> color sel #20421dff
> color sel #1f421cff
> color sel #1e421bff
> color sel #1c4219ff
> color sel #1a4216ff
> color sel #184214ff
> color sel #174213ff
> color sel #164211ff
> color sel #154211ff
> color sel #144210ff
> color sel #14420fff
> color sel #13420eff
> color sel #13420dff
> color sel #13420cff
> color sel #13420bff
> color sel #13420aff
> color sel #154209ff
> color sel #164209ff
> color sel #184209ff
> color sel #194209ff
> color sel #1b4209ff
> color sel #1d420aff
> color sel #1e420aff
> color sel #1f420aff
> color sel #20420aff
> color sel #21420aff
> color sel #22420aff
> color sel #23420bff
> color sel #24420bff
> color sel #25420bff
> color sel #26420bff
> color sel #27420bff
> color sel #28420bff
> color sel #29420bff
> color sel #28420bff
> color sel #27420bff
> color sel #26420bff
> color sel #24420bff
> color sel #23420cff
> color sel #21420cff
> color sel #20420dff
> color sel #1e420eff
> color sel #1d420fff
> color sel #1b4210ff
> color sel #1b4211ff
> color sel #1a4212ff
> color sel #1a4213ff
> color sel #194214ff
> color sel #194216ff
> color sel #194218ff
> color sel #194219ff
> color sel #1a4219ff
> color sel #1a421aff
> color sel #1b421aff
> color sel #1c421bff
> color sel #1c421cff
> color sel #1d421cff
> color sel #1d431cff
> color sel #1f471eff
> color sel #1f491fff
> color sel #204a1fff
> color sel #214d20ff
> color sel #224e21ff
> color sel #224f21ff
> color sel #235222ff
> color sel #245524ff
> color sel #255624ff
> color sel #265825ff
> color sel #265925ff
> color sel #275b26ff
> color sel #285c27ff
> color sel #296028ff
> color sel #2a6229ff
Drag select of 10 residues
> select clear
> save "/Users/u5631158/Desktop/Anne Straube Placement/KIF1C mutations
> chimera.cxs"
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.9rc202410310525 (2024-10-31)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
QAccessibleTree::indexFromLogical: invalid index: 0 0 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 0
QAccessibleTree::indexFromLogical: invalid index: 0 1 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 1
QAccessibleTree::indexFromLogical: invalid index: 0 2 for
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QAccessibleTree::indexFromLogical: invalid index: 0 5 for
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QAccessibleTree::indexFromLogical: invalid index: 0 0 for
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QAccessibleTree::indexFromLogical: invalid index: 0 1 for
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QAccessibleTree::indexFromLogical: invalid index: 0 2 for
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QAccessibleTree::indexFromLogical: invalid index: 0 3 for
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QAccessibleTree::indexFromLogical: invalid index: 0 4 for
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QAccessibleTree::indexFromLogical: invalid index: 0 5 for
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QAccessibleTree::indexFromLogical: invalid index: 0 0 for
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QAccessibleTree::indexFromLogical: invalid index: 0 1 for
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QAccessibleTree::indexFromLogical: invalid index: 0 2 for
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QAccessibleTree::indexFromLogical: invalid index: 0 3 for
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QAccessibleTree::indexFromLogical: invalid index: 0 4 for
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QAccessibleTree::indexFromLogical: invalid index: 0 5 for
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QAccessibleTree::indexFromLogical: invalid index: 0 0 for
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QAccessibleTree::indexFromLogical: invalid index: 0 1 for
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QAccessibleTree::indexFromLogical: invalid index: 0 2 for
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QAccessibleTree::indexFromLogical: invalid index: 0 3 for
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QAccessibleTree::indexFromLogical: invalid index: 0 4 for
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QAccessibleTree::indexFromLogical: invalid index: 0 0 for
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QAccessibleTree::indexFromLogical: invalid index: 0 1 for
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QAccessibleTree::indexFromLogical: invalid index: 0 2 for
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QAccessibleTree::indexFromLogical: invalid index: 0 3 for
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QAccessibleTree::indexFromLogical: invalid index: 0 4 for
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QAccessibleTree::indexFromLogical: invalid index: 0 5 for
SizedTreeWidget(0x131a6f6f0)
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QAccessibleTree::indexFromLogical: invalid index: 0 0 for
SizedTreeWidget(0x131a6f6f0)
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QAccessibleTree::indexFromLogical: invalid index: 0 1 for
SizedTreeWidget(0x131a6f6f0)
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QAccessibleTree::indexFromLogical: invalid index: 0 2 for
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QAccessibleTree::indexFromLogical: invalid index: 0 3 for
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QAccessibleTree::indexFromLogical: invalid index: 0 4 for
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QAccessibleTree::indexFromLogical: invalid index: 0 5 for
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QAccessibleTree::indexFromLogical: invalid index: 0 0 for
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QAccessibleTree::indexFromLogical: invalid index: 0 2 for
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Requested invalid tree cell: 0 2
QAccessibleTree::indexFromLogical: invalid index: 0 3 for
SizedTreeWidget(0x131a6f6f0)
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QAccessibleTree::indexFromLogical: invalid index: 0 4 for
SizedTreeWidget(0x131a6f6f0)
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QAccessibleTree::indexFromLogical: invalid index: 0 5 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 5
QAccessibleTree::indexFromLogical: invalid index: 0 0 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 0
QAccessibleTree::indexFromLogical: invalid index: 0 1 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 1
QAccessibleTree::indexFromLogical: invalid index: 0 2 for
SizedTreeWidget(0x131a6f6f0)
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QAccessibleTree::indexFromLogical: invalid index: 0 3 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 3
QAccessibleTree::indexFromLogical: invalid index: 0 4 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 4
QAccessibleTree::indexFromLogical: invalid index: 0 5 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 5
QAccessibleTree::indexFromLogical: invalid index: 0 0 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 0
QAccessibleTree::indexFromLogical: invalid index: 0 1 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 1
QAccessibleTree::indexFromLogical: invalid index: 0 2 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 2
QAccessibleTree::indexFromLogical: invalid index: 0 3 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 3
QAccessibleTree::indexFromLogical: invalid index: 0 4 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 4
QAccessibleTree::indexFromLogical: invalid index: 0 5 for
SizedTreeWidget(0x131a6f6f0)
Requested invalid tree cell: 0 5
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M3
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac15,12
Model Number: MRXN3B/A
Chip: Apple M3
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: mBoot-18000.120.36
OS Loader Version: 11881.140.96.701.1
Software:
System Software Overview:
System Version: macOS 15.7.7 (24G720)
Kernel Version: Darwin 24.6.0
Time since boot: 2 days, 22 hours, 19 minutes
Graphics/Displays:
Apple M3:
Chipset Model: Apple M3
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.7.1
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.7
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.7
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9rc202410310525
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.5
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2
ChimeraX-Label: 1.1.11
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.2.3
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.7
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.54.1
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.12.1
html2text: 2024.2.26
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.1
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.1
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
File attachment: KIF1C mutations chimera.cxs
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