![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9527 closed defect (duplicate)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00007ff848bb7700 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-08-05 08:52:35.00 +0800","app_version":"1.6.1","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"1.6.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":1,"is_first_party":0,"bug_type":"309","os_version":"macOS 13.5 (22G74)","roots_installed":0,"name":"ChimeraX","incident_id":"A818A589-ED8A-497F-9384-E2CDD6008903"}
{
"uptime" : 800000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,1",
"coalitionID" : 535,
"osVersion" : {
"train" : "macOS 13.5",
"build" : "22G74",
"releaseType" : "User"
},
"captureTime" : "2023-08-05 08:52:17.1320 +0800",
"incident" : "A818A589-ED8A-497F-9384-E2CDD6008903",
"pid" : 74527,
"cpuType" : "X86-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-08-02 09:24:36.2213 +0800",
"procStartAbsTime" : 602866965098694,
"procExitAbsTime" : 802409857179969,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"C968AC8B-3866-522B-A21E-8ADAC0FA01A2","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "895BBDB1-5A79-8D03-E2FE-511F3EBC5B5C",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 42861,
"bridgeVersion" : {"build":"20P6072","train":"7.6"},
"sleepWakeUUID" : "676239CB-0CAF-48AB-B2B2-8624B26A9ED7",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 140737488199656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7ffffffda000-7ffffffdb000 [ 4K] r-x\/r-x SM=SHM ",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":74527},
"ktriageinfo" : "VM - (arg = 0x0) Waiting on busy page was interrupted\n",
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 140737488199656\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n shared memory 7ffffffda000-7ffffffdb000 [ 4K] r-x\/r-x SM=SHM ",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "63508950b3714d3622fc77f7",
"factorPackIds" : {
"SIRI_MEMORY_SYNC_CONFIG" : "63508beab3714d3622fc7808"
},
"deploymentId" : 240000004
},
{
"rolloutId" : "62c751b6bcb0435c2153fe92",
"factorPackIds" : {
"SIRI_UNDERSTANDING_ASR_ASSISTANT" : "6317ae3a3d24842ff84fd83f",
"SIRI_UNDERSTANDING_MORPHUN" : "63f00b1c06644d312600c7bd"
},
"deploymentId" : 240000269
}
],
"experiments" : [
{
"treatmentId" : "a092db1b-c401-44fa-9c54-518b7d69ca61",
"experimentId" : "64a844035c85000c0f42398a",
"deploymentId" : 400000016
},
{
"treatmentId" : "d0f6b534-d7c4-4f38-8e01-a0cdc99f9c3f",
"experimentId" : "645b950d4dec7a5102737ec1",
"deploymentId" : 400000005
}
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/alncat/work/em/mtr4/ref0.mrc format mrc
Opened ref0.mrc as #1, grid size 136,136,136, pixel 1.7, shown at level
0.00572, step 1, values float32
> lighting soft
> lighting full
> lighting soft
> volume #1 level 0.003935
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 136,136,136, pixel 1.7, shown at level
0.00598, step 1, values float32
> volume #2 level 0.004341
> volume #1 level 0.00252
> volume #1 level 0.003997
> open /Users/alncat/work/em/mtr4/ref3.mrc
Opened ref3.mrc as #3, grid size 136,136,136, pixel 1.7, shown at level
0.00565, step 1, values float32
> volume #3 level 0.003531
> volume #3 level 0.002745
> volume #3 level 0.003833
> volume #3 level 0.003954
> close
> open /Users/alncat/work/em/mtr4/ref0.mrc format mrc
Opened ref0.mrc as #1, grid size 134,134,134, pixel 1.7, shown at level
0.0115, step 1, values float32
> volume #1 level 0.008327
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 134,134,134, pixel 1.7, shown at level
0.0107, step 1, values float32
> volume #2 level 0.006461
> open /Users/alncat/work/em/mtr4/ref2.mrc
Opened ref2.mrc as #3, grid size 134,134,134, pixel 1.7, shown at level
0.0131, step 1, values float32
> volume #3 level 0.01073
> open /Users/alncat/work/em/mtr4/ref3.mrc
Opened ref3.mrc as #4, grid size 134,134,134, pixel 1.7, shown at level
0.0118, step 1, values float32
> volume #4 level 0.009254
> volume #3 level 0.004441
> volume #1 level 0.005729
> close
> open /Users/alncat/work/em/mtr4/ref0.mrc format mrc
Opened ref0.mrc as #1, grid size 134,134,134, pixel 1.7, shown at level
0.0153, step 1, values float32
> volume #1 level 0.01193
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 134,134,134, pixel 1.7, shown at level
0.0141, step 1, values float32
> volume #2 level 0.01031
> volume #2 level 0.00937
> open /Users/alncat/work/em/mtr4/ref3.mrc
Opened ref3.mrc as #3, grid size 134,134,134, pixel 1.7, shown at level
0.0138, step 1, values float32
> volume #3 level 0.008342
> close
> open /Users/alncat/work/em/mtr4/ref0.mrc format mrc
Opened ref0.mrc as #1, grid size 136,136,136, pixel 1.7, shown at level
0.00614, step 1, values float32
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 136,136,136, pixel 1.7, shown at level
0.00728, step 1, values float32
> volume #2 level 0.004267
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0269, step 1, values float32
> volume #1 level 0.02366
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0204, step 1, values float32
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0241, step 1, values float32
> volume #3 level 0.02114
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0231, step 1, values float32
> volume #4 level 0.0209
> close
> open /Users/alncat/work/em/mtr4/ref0.mrc
Opened ref0.mrc as #1, grid size 134,134,134, pixel 1.7, shown at level
0.0141, step 1, values float32
> volume #1 level 0.01133
> volume #1 level 0.0105
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 134,134,134, pixel 1.7, shown at level 0.016,
step 1, values float32
> volume #2 level 0.01153
> open /Users/alncat/work/em/mtr4/ref2.mrc
Opened ref2.mrc as #3, grid size 134,134,134, pixel 1.7, shown at level
0.0151, step 1, values float32
> volume #3 level 0.009847
> open /Users/alncat/work/em/mtr4/ref3.mrc
Opened ref3.mrc as #4, grid size 134,134,134, pixel 1.7, shown at level
0.0141, step 1, values float32
> volume #4 level 0.007919
> close
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0308, step 1, values float32
> volume #1 level 0.02812
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0265, step 1, values float32
> volume #2 level 0.02325
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0275, step 1, values float32
> volume #3 level 0.02368
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0241, step 1, values float32
> volume #1 level 0.02022
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0308, step 1, values float32
> volume #2 level 0.0269
> close
> open /Users/alncat/work/em/mtr4/ref0.mrc
Opened ref0.mrc as #1, grid size 134,134,134, pixel 1.7, shown at level
0.0158, step 1, values float32
> volume #1 level 0.01186
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 134,134,134, pixel 1.7, shown at level
0.0175, step 1, values float32
> volume #2 level 0.009805
> volume #2 level 0.007595
> close
> open /Users/alncat/work/em/mtr4/ref0.mrc format mrc
Opened ref0.mrc as #1, grid size 134,134,134, pixel 1.7, shown at level
0.0159, step 1, values float32
> volume #1 level 0.01103
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 134,134,134, pixel 1.7, shown at level
0.0161, step 1, values float32
> volume #2 level 0.008955
> open /Users/alncat/work/em/mtr4/ref2.mrc
Opened ref2.mrc as #3, grid size 134,134,134, pixel 1.7, shown at level 0.014,
step 1, values float32
> volume #3 level 0.005699
> open /Users/alncat/work/em/mtr4/ref3.mrc
Opened ref3.mrc as #4, grid size 134,134,134, pixel 1.7, shown at level
0.0155, step 1, values float32
> volume #4 level 0.007719
> close
> open /Users/alncat/work/em/mtr4/ref0.mrc format mrc
Opened ref0.mrc as #1, grid size 134,134,134, pixel 1.7, shown at level
0.0116, step 1, values float32
> volume #1 level 0.005255
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0274, step 1, values float32
> close #2
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 134,134,134, pixel 1.7, shown at level
0.0124, step 1, values float32
> volume #2 level 0.007484
> open /Users/alncat/work/em/mtr4/ref2.mrc
Opened ref2.mrc as #3, grid size 134,134,134, pixel 1.7, shown at level
0.0127, step 1, values float32
> volume #3 level 0.0075
> open /Users/alncat/work/em/mtr4/ref3.mrc
Opened ref3.mrc as #4, grid size 134,134,134, pixel 1.7, shown at level
0.0146, step 1, values float32
> volume #4 level 0.008119
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0326, step 1, values float32
> volume #1 level 0.02489
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0274, step 1, values float32
> volume #2 level 0.02062
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level 0.02,
step 1, values float32
> volume #3 level 0.01713
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0319, step 1, values float32
> volume #4 level 0.02798
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x1b' for virtual key 53 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0322, step 1, values float32
> volume #1 level 0.02942
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0262, step 1, values float32
> volume #2 level 0.02008
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.024, step 1, values float32
> volume #3 level 0.01992
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0277, step 1, values float32
> volume #4 level 0.02292
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0242, step 1, values float32
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0263, step 1, values float32
> volume #2 level 0.02272
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0321, step 1, values float32
> volume #3 level 0.02647
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0245, step 1, values float32
> volume #4 level 0.01956
> close
> open /Users/alncat/work/em/mtr4/ref0.mrc format mrc
Opened ref0.mrc as #1, grid size 134,134,134, pixel 1.7, shown at level
0.0147, step 1, values float32
> volume #1 level 0.0103
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 134,134,134, pixel 1.7, shown at level
0.0155, step 1, values float32
> volume #2 level 0.01052
> open /Users/alncat/work/em/mtr4/ref2.mrc
Opened ref2.mrc as #3, grid size 134,134,134, pixel 1.7, shown at level
0.0149, step 1, values float32
> volume #3 level 0.006404
> open /Users/alncat/work/em/mtr4/ref3.mrc
Opened ref3.mrc as #4, grid size 134,134,134, pixel 1.7, shown at level 0.015,
step 1, values float32
> volume #4 level 0.009151
> volume #4 level 0.007737
> volume #3 level 0.008836
> volume #1 level 0.008028
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0215, step 1, values float32
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0249, step 1, values float32
> volume #1 level 0.02076
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0218, step 1, values float32
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0301, step 1, values float32
> volume #3 level 0.02402
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0298, step 1, values float32
> volume #4 level 0.02347
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0312, step 1, values float32
> volume #1 level 0.02605
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0206, step 1, values float32
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0196, step 1, values float32
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0336, step 1, values float32
> volume #4 level 0.02981
> close
> open /Users/alncat/work/em/mtr4/ref0.mrc
Opened ref0.mrc as #1, grid size 134,134,134, pixel 1.7, shown at level
0.0144, step 1, values float32
> volume #1 level 0.008603
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 134,134,134, pixel 1.7, shown at level
0.0148, step 1, values float32
> volume #2 level 0.01112
> open /Users/alncat/work/em/mtr4/ref2.mrc
Opened ref2.mrc as #3, grid size 134,134,134, pixel 1.7, shown at level
0.0134, step 1, values float32
> volume #3 level 0.009043
> open /Users/alncat/work/em/mtr4/ref3.mrc
Opened ref3.mrc as #4, grid size 134,134,134, pixel 1.7, shown at level 0.013,
step 1, values float32
> volume #4 level 0.008795
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0291, step 1, values float32
> volume #1 level 0.02704
> volume #1 level 0.02528
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0283, step 1, values float32
> volume #2 level 0.02493
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0287, step 1, values float32
> volume #3 level 0.02459
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.034, step 1, values float32
> volume #4 level 0.02922
> volume #4 level 0.02585
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0329, step 1, values float32
> volume #1 level 0.03037
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0318, step 1, values float32
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\xd' for virtual key 36 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume #2 level 0.028
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0314, step 1, values float32
> volume #3 level 0.02747
> volume #3 level 0.02631
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0229, step 1, values float32
> volume #4 level 0.02061
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0287, step 1, values float32
> volume #1 level 0.02634
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0276, step 1, values float32
> volume #2 level 0.02387
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0328, step 1, values float32
> volume #3 level 0.02448
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0325, step 1, values float32
> volume #4 level 0.02751
Mismatch between Cocoa '\x0' and Carbon 'w' for virtual key 13 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon 'W' for virtual key 13 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon 'w' for virtual key 13 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon 'w' for virtual key 13 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\u2211' for virtual key 13 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u201e' for virtual key 13 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u2211' for virtual key 13 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u201e' for virtual key 13 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x17' for virtual key 13 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x17' for virtual key 13 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x17' for virtual key 13 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x17' for virtual key 13 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x17' for virtual key 13 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x17' for virtual key 13 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x17' for virtual key 13 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x17' for virtual key 13 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> volume #1 level 0.02364
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0306, step 1, values float32
> volume #1 level 0.0288
> volume #1 level 0.025
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0334, step 1, values float32
> volume #2 level 0.03
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0321, step 1, values float32
> volume #3 level 0.03
> volume #3 level 0.028
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0286, step 1, values float32
> volume #4 level 0.024
> volume #4 level 0.02089
> close
> open /Users/alncat/work/em/mtr4/ref0.mrc format mrc
Opened ref0.mrc as #1, grid size 134,134,134, pixel 1.7, shown at level
0.0133, step 1, values float32
> volume #1 level 0.009655
> open /Users/alncat/work/em/mtr4/ref1.mrc
Opened ref1.mrc as #2, grid size 134,134,134, pixel 1.7, shown at level
0.0128, step 1, values float32
> volume #2 level 0.009314
> open /Users/alncat/work/em/mtr4/ref2.mrc
Opened ref2.mrc as #3, grid size 134,134,134, pixel 1.7, shown at level
0.0125, step 1, values float32
> volume #3 level 0.009478
> open /Users/alncat/work/em/mtr4/ref3.mrc
Opened ref3.mrc as #4, grid size 134,134,134, pixel 1.7, shown at level 0.014,
step 1, values float32
> volume #4 level 0.01021
> volume #4 level 0.008777
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0346, step 1, values float32
> volume #1 level 0.03
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0322, step 1, values float32
> volume #2 level 0.02691
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0338, step 1, values float32
> volume #3 level 0.03028
> volume #3 level 0.03
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0271, step 1, values float32
> volume #3 level 0.028
> volume #4 level 0.024
> volume #1 level 0.02802
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0326, step 1, values float32
> volume #1 level 0.03
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.034, step 1, values float32
> volume #2 level 0.03
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0309, step 1, values float32
> volume #3 level 0.03
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0312, step 1, values float32
> volume #4 level 0.03
> volume #4 level 0.02681
> close
> open /Users/alncat/Downloads/vol_000.mrc
Opened vol_000.mrc as #1, grid size 320,320,320, pixel 2.2, shown at level
0.0127, step 2, values float32
> volume #1 level 0.01159
> volume #1 level 0.01339
> close
> open /Users/alncat/Downloads/vol_000.mrc
Opened vol_000.mrc as #1, grid size 320,320,320, pixel 2.2, shown at level
0.0127, step 2, values float32
> volume #1 level 0.01519
> volume #1 level 0.01357
> open /Users/alncat/Downloads/vol_009.mrc
Opened vol_009.mrc as #2, grid size 320,320,320, pixel 2.2, shown at level
0.0138, step 2, values float32
> volume #2 level 0.008816
> volume #2 level 0.01517
> close
> open /Users/alncat/Downloads/vol_000.mrc
Opened vol_000.mrc as #1, grid size 320,320,320, pixel 2.2, shown at level
0.00961, step 2, values float32
> volume #1 level 0.01371
> close
> open /Users/alncat/Downloads/vol_009.mrc
Opened vol_009.mrc as #1, grid size 320,320,320, pixel 2.2, shown at level
0.0146, step 2, values float32
> volume #1 level 0.01064
> volume #1 level 0.01551
> close
> open /Users/alncat/Downloads/vol_009.mrc
Opened vol_009.mrc as #1, grid size 320,320,320, pixel 2.2, shown at level
0.0146, step 2, values float32
> volume #1 step 1
> volume #1 level 0.01612
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0336, step 1, values float32
> volume #1 level 0.03
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0339, step 1, values float32
> volume #2 level 0.03
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.033, step 1, values float32
> volume #3 level 0.03
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0358, step 1, values float32
> volume #4 level 0.03
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0313, step 1, values float32
> volume #1 level 0.03
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0336, step 1, values float32
> volume #2 level 0.03
> open /Users/alncat/work/em/mtr4/tmp2.mrc
File size 14385152 too small for grid size (174,174,174)
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0324, step 1, values float32
> volume #3 level 0.03
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0295, step 1, values float32
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0324, step 1, values float32
> volume #2 level 0.03
> volume #2 level 0.02809
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0304, step 1, values float32
> volume #3 level 0.03
> volume #3 level 0.0249
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0311, step 1, values float32
> volume #4 level 0.03
> volume #4 level 0.028
> volume #3 level 0.02235
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0263, step 1, values float32
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0356, step 1, values float32
> volume #2 level 0.03
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0289, step 1, values float32
> volume #3 level 0.025
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level 0.03,
step 1, values float32
> volume #4 level 0.02712
> volume #4 level 0.1
> volume #4 level 0.05
> volume #4 level 0.1
> volume #4 level 0.05
> volume #4 level 0.01
> volume #4 level 0.05
> volume #4 level 0.02
> volume #4 level 0.03
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc format mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.028, step 1, values float32
> volume #1 level 0.02008
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0337, step 1, values float32
> volume #2 level 0.02929
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0247, step 1, values float32
> volume #3 level 0.022
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0309, step 1, values float32
> volume #4 level 0.025
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.033, step 1, values float32
> volume #1 level 0.03
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0297, step 1, values float32
> volume #2 level 0.025
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0329, step 1, values float32
> volume #3 level 0.03
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0269, step 1, values float32
> volume #4 level 0.024
> volume #2 level 0.02088
> fitmpa
Unknown command: fitmpa
> fitmap
Missing or invalid "atomsOrMap" argument: empty atom specifier
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '!' for virtual key 18 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a1' for virtual key 18 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u2044' for virtual key 18 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a1' for virtual key 18 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u2044' for virtual key 18 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '1' for virtual key 18 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a0' for virtual key 49 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon ' ' for virtual key 49 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon '#' for virtual key 20 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a3' for virtual key 20 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u2039' for virtual key 20 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00a3' for virtual key 20 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u2039' for virtual key 20 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '3' for virtual key 20 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> measure rotation #1 toModel Model #3
Invalid "toModel" argument: invalid model specifier
> measure rotation #1 toModel #3
Position of tmp0.mrc #1 relative to tmp2.mrc #3 coordinates:
Matrix rotation and translation
1.00000000 0.00000000 0.00000000 0.00000000
0.00000000 1.00000000 0.00000000 0.00000000
0.00000000 0.00000000 1.00000000 0.00000000
Axis 0.00000000 0.00000000 1.00000000
Axis point 0.00000000 0.00000000 0.00000000
Rotation angle (degrees) 0.00000000
Shift along axis 0.00000000
Rotation angle is near zero (0 degrees)
> measure rotation #1 toModel #3 showAxis true
Position of tmp0.mrc #1 relative to tmp2.mrc #3 coordinates:
Matrix rotation and translation
1.00000000 0.00000000 0.00000000 0.00000000
0.00000000 1.00000000 0.00000000 0.00000000
0.00000000 0.00000000 1.00000000 0.00000000
Axis 0.00000000 0.00000000 1.00000000
Axis point 0.00000000 0.00000000 0.00000000
Rotation angle (degrees) 0.00000000
Shift along axis 0.00000000
Rotation angle is near zero (0 degrees)
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0315, step 1, values float32
> volume #1 level 0.03
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0328, step 1, values float32
> volume #2 level 0.02875
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0324, step 1, values float32
> volume #3 level 0.03
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0355, step 1, values float32
> volume #4 level 0.03
> volume #4 level 0.02887
> volume #3 level 0.02737
> measure rotation #3 toModel #4 showAxis true
Position of tmp2.mrc #3 relative to tmp3.mrc #4 coordinates:
Matrix rotation and translation
1.00000000 0.00000000 0.00000000 0.00000000
0.00000000 1.00000000 0.00000000 0.00000000
0.00000000 0.00000000 1.00000000 0.00000000
Axis 0.00000000 0.00000000 1.00000000
Axis point 0.00000000 0.00000000 0.00000000
Rotation angle (degrees) 0.00000000
Shift along axis 0.00000000
Rotation angle is near zero (0 degrees)
Mismatch between Cocoa '\x0' and Carbon 'e' for virtual key 14 with
QFlags(NoModifier)
Mismatch between Cocoa '\x0' and Carbon 'E' for virtual key 14 with
QFlags(ShiftModifier)
Mismatch between Cocoa '\x0' and Carbon 'e' for virtual key 14 with
QFlags(ControlModifier)
Mismatch between Cocoa '\x0' and Carbon 'e' for virtual key 14 with
QFlags(ShiftModifier|ControlModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00b4' for virtual key 14 with
QFlags(AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00b4' for virtual key 14 with
QFlags(ShiftModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00b4' for virtual key 14 with
QFlags(ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\u00b4' for virtual key 14 with
QFlags(ShiftModifier|ControlModifier|AltModifier)
Mismatch between Cocoa '\x0' and Carbon '\x5' for virtual key 14 with
QFlags(MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x5' for virtual key 14 with
QFlags(ShiftModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x5' for virtual key 14 with
QFlags(ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x5' for virtual key 14 with
QFlags(ShiftModifier|ControlModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x5' for virtual key 14 with
QFlags(AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x5' for virtual key 14 with
QFlags(ShiftModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x5' for virtual key 14 with
QFlags(ControlModifier|AltModifier|MetaModifier)
Mismatch between Cocoa '\x0' and Carbon '\x5' for virtual key 14 with
QFlags(ShiftModifier|ControlModifier|AltModifier|MetaModifier)
> translation #3 toModel #4
Unknown command: measure translation #3 toModel #4
> close
> open /Users/alncat/work/em/mtr4/tmp0.mrc
Opened tmp0.mrc as #1, grid size 174,174,174, pixel 2.27, shown at level
0.0315, step 1, values float32
> volume #1 level 0.03
> volume #1 level 0.028
> volume #1 level 0.02656
> open /Users/alncat/work/em/mtr4/tmp1.mrc
Opened tmp1.mrc as #2, grid size 174,174,174, pixel 2.27, shown at level
0.0336, step 1, values float32
> volume #2 level 0.03
> open /Users/alncat/work/em/mtr4/tmp2.mrc
Opened tmp2.mrc as #3, grid size 174,174,174, pixel 2.27, shown at level
0.0267, step 1, values float32
> volume #3 level 0.024
> open /Users/alncat/work/em/mtr4/tmp3.mrc
Opened tmp3.mrc as #4, grid size 174,174,174, pixel 2.27, shown at level
0.0319, step 1, values float32
> volume #4 level 0.03
> volume #4 level 0.02876
> ui tool show "Fit in Map"
Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 0 atomic models, 1 maps.
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-4.14.1
OpenGL renderer: AMD Radeon Pro 5300M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 6-Core Intel Core i7
Processor Speed: 2.6 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 12 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1968.140.7.0.0 (iBridge: 20.16.6072.0.0,0)
OS Loader Version: 577.140.2~15
Software:
System Software Overview:
System Version: macOS 13.5 (22G74)
Kernel Version: Darwin 22.6.0
Time since boot: 11 days, 13 hours, 16 minutes
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0000
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
AMD Radeon Pro 5300M:
Chipset Model: AMD Radeon Pro 5300M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0043
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32207P1-019
Option ROM Version: 113-D32207P1-019
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
VX2880-4K-HDU:
Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: WUF230220191
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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