Changes between Initial Version and Version 1 of Ticket #9928


Ignore:
Timestamp:
Oct 9, 2023, 10:32:28 AM (2 years ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #9928

    • Property Component Unassigned → Graphics
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Graphics hardware encountered an error and was reset

  • Ticket #9928 – Description

    initial v1  
    1434143454390 atoms, 55374 bonds, 40 pseudobonds, 7274 residues, 2 models selected 
    14351435
    1436 > select subtract #4
    1437 
    1438 Nothing selected 
    1439 
    1440 > hide #!3 models
    1441 
    1442 > show #!3 models
    1443 
    1444 > hide #!3 models
    1445 
    1446 > hide #!4 models
    1447 
    1448 > hide #!2 models
    1449 
    1450 > show #!2 models
    1451 
    1452 > rename #2 Structure_20SCP_preholo_docked.pdb
    1453 
    1454 > open
    1455 > /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_mature_beta-
    1456 > subunits_docking.pdb
    1457 
    1458 Summary of feedback from opening
    1459 /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_mature_beta-
    1460 subunits_docking.pdb 
    1461 --- 
    1462 warnings | Start residue of secondary structure not found: HELIX 1 1 VAL A 20
    1463 ALA A 30 1 11 
    1464 Start residue of secondary structure not found: HELIX 2 2 GLY A 80 TYR A 101 1
    1465 22 
    1466 Start residue of secondary structure not found: HELIX 3 3 THR A 107 THR A 122
    1467 1 16 
    1468 Start residue of secondary structure not found: HELIX 4 4 TYR A 167 ARG A 177
    1469 1 11 
    1470 Start residue of secondary structure not found: HELIX 5 5 LEU A 184 SER A 198
    1471 1 15 
    1472 955 messages similar to the above omitted 
    1473  
    1474 Chain information for Structure_20SCP_preholo_mature_beta-subunits_docking.pdb 
    1475 --- 
    1476 Chain | Description 
    1477 5.1/A 5.29/A 5.63/A 5.64/A 5.15/O 5.46/R 5.63/R 5.64/R | No description
    1478 available 
    1479 5.2/B 5.16/P | No description available 
    1480 5.30/B 5.63/B 5.64/B 5.47/S 5.63/S 5.64/S | No description available 
    1481 5.3/C 5.17/Q | No description available 
    1482 5.31/C 5.63/C 5.64/C 5.48/T 5.63/T 5.64/T | No description available 
    1483 5.4/D 5.18/R | No description available 
    1484 5.32/D 5.63/D 5.64/D 5.49/U 5.63/U 5.64/U | No description available 
    1485 5.5/E 5.19/S | No description available 
    1486 5.33/E 5.63/E 5.64/E 5.50/V 5.63/V 5.64/V | No description available 
    1487 5.6/F 5.20/T | No description available 
    1488 5.34/F 5.63/F 5.64/F 5.51/W 5.63/W 5.64/W | No description available 
    1489 5.7/G 5.21/U | No description available 
    1490 5.35/G 5.63/G 5.64/G 5.52/X 5.63/X 5.64/X | No description available 
    1491 5.8/H 5.63/K 5.22/V 5.63/b | No description available 
    1492 5.36/H 5.63/H 5.64/H 5.53/Y 5.63/Y 5.64/Y | No description available 
    1493 5.9/I 5.63/L 5.23/W 5.63/c | No description available 
    1494 5.37/I 5.63/I 5.64/I 5.54/Z 5.63/Z 5.64/Z | No description available 
    1495 5.10/J 5.41/M 5.63/M 5.64/M 5.24/X 5.58/d 5.63/d 5.64/d | No description
    1496 available 
    1497 5.38/J 5.63/J 5.64/J 5.55/a 5.63/a 5.64/a | No description available 
    1498 5.11/K 5.63/N 5.25/Y 5.63/e | No description available 
    1499 5.39/K 5.64/K 5.56/b 5.64/b | No description available 
    1500 5.12/L 5.63/O 5.26/Z 5.63/f | No description available 
    1501 5.40/L 5.64/L 5.57/c 5.64/c | No description available 
    1502 5.13/M 5.63/P 5.27/a 5.63/g | No description available 
    1503 5.14/N 5.63/Q 5.28/b 5.63/h | No description available 
    1504 5.42/N 5.64/N 5.59/e 5.64/e | No description available 
    1505 5.43/O 5.64/O 5.60/f 5.64/f | No description available 
    1506 5.44/P 5.64/P 5.61/g 5.64/g | No description available 
    1507 5.45/Q 5.64/Q 5.62/h 5.64/h | No description available 
    1508  
    1509 
    1510 > hide
    1511 > #2.1,3,5-8,13,18,20,22-25,30#5.1-3,5-17,19-29,31,33-36,41,46,48,50-53,58#!2.2,4,9-12,14-17,19,21,26-29,31-34#!5.4,18,30,32,37-40,42-45,47,49,54-57,59-64
    1512 > atoms
    1513 
    1514 > hide
    1515 > #2.1,3,5-8,13,18,20,22-25,30#5.1-3,5-17,19-29,31,33-36,41,46,48,50-53,58#!2.2,4,9-12,14-17,19,21,26-29,31-34#!5.4,18,30,32,37-40,42-45,47,49,54-57,59-64
    1516 > cartoons
    1517 
    1518 > show
    1519 > #2.1,3,5-8,13,18,20,22-25,30#5.1-3,5-17,19-29,31,33-36,41,46,48,50-53,58#!2.2,4,9-12,14-17,19,21,26-29,31-34#!5.4,18,30,32,37-40,42-45,47,49,54-57,59-64
    1520 > cartoons
    1521 
    1522 > style
    1523 > #2.1,3,5-8,13,18,20,22-25,30#5.1-3,5-17,19-29,31,33-36,41,46,48,50-53,58#!2.2,4,9-12,14-17,19,21,26-29,31-34#!5.4,18,30,32,37-40,42-45,47,49,54-57,59-64
    1524 > stick
    1525 
    1526 Changed 268216 atom styles 
    1527 
    1528 > hide #!5 models
    1529 
    1530 > close #5
    1531 
    1532 > rename #2 Structure_20SCP_preholo_2xMap5_docked.pdb
    1533 
    1534 > show #!3 models
    1535 
    1536 > hide #!3 models
    1537 
    1538 > show #!3 models
    1539 
    1540 > hide #!3 models
    1541 
    1542 > show #!3 models
    1543 
    1544 > show #!4 models
    1545 
    1546 > hide #!4 models
    1547 
    1548 > hide #!2 models
    1549 
    1550 > show #!4 models
    1551 
    1552 > hide #!4 models
    1553 
    1554 > show #!4 models
    1555 
    1556 > close #4
    1557 
    1558 > split #3
    1559 
    1560 Split Structure_20SCP_preholo_mature_beta-subunits_docked_split (#3) into 34
    1561 models 
    1562 Chain information for Structure_20SCP_preholo_mature_beta-
    1563 subunits_docked_split A #3.1 
    1564 --- 
    1565 Chain | Description 
    1566 A | No description available 
    1567  
    1568 Chain information for Structure_20SCP_preholo_mature_beta-
    1569 subunits_docked_split B #3.2 
    1570 --- 
    1571 Chain | Description 
    1572 B | No description available 
    1573  
    1574 Chain information for Structure_20SCP_preholo_mature_beta-
    1575 subunits_docked_split C #3.3 
    1576 --- 
    1577 Chain | Description 
    1578 C | No description available 
    1579  
    1580 Chain information for Structure_20SCP_preholo_mature_beta-
    1581 subunits_docked_split D #3.4 
    1582 --- 
    1583 Chain | Description 
    1584 D | No description available 
    1585  
    1586 Chain information for Structure_20SCP_preholo_mature_beta-
    1587 subunits_docked_split E #3.5 
    1588 --- 
    1589 Chain | Description 
    1590 E | No description available 
    1591  
    1592 Chain information for Structure_20SCP_preholo_mature_beta-
    1593 subunits_docked_split F #3.6 
    1594 --- 
    1595 Chain | Description 
    1596 F | No description available 
    1597  
    1598 Chain information for Structure_20SCP_preholo_mature_beta-
    1599 subunits_docked_split G #3.7 
    1600 --- 
    1601 Chain | Description 
    1602 G | No description available 
    1603  
    1604 Chain information for Structure_20SCP_preholo_mature_beta-
    1605 subunits_docked_split H #3.8 
    1606 --- 
    1607 Chain | Description 
    1608 H | No description available 
    1609  
    1610 Chain information for Structure_20SCP_preholo_mature_beta-
    1611 subunits_docked_split I #3.9 
    1612 --- 
    1613 Chain | Description 
    1614 I | No description available 
    1615  
    1616 Chain information for Structure_20SCP_preholo_mature_beta-
    1617 subunits_docked_split J #3.10 
    1618 --- 
    1619 Chain | Description 
    1620 J | No description available 
    1621  
    1622 Chain information for Structure_20SCP_preholo_mature_beta-
    1623 subunits_docked_split K #3.11 
    1624 --- 
    1625 Chain | Description 
    1626 K | No description available 
    1627  
    1628 Chain information for Structure_20SCP_preholo_mature_beta-
    1629 subunits_docked_split L #3.12 
    1630 --- 
    1631 Chain | Description 
    1632 L | No description available 
    1633  
    1634 Chain information for Structure_20SCP_preholo_mature_beta-
    1635 subunits_docked_split M #3.13 
    1636 --- 
    1637 Chain | Description 
    1638 M | No description available 
    1639  
    1640 Chain information for Structure_20SCP_preholo_mature_beta-
    1641 subunits_docked_split N #3.14 
    1642 --- 
    1643 Chain | Description 
    1644 N | No description available 
    1645  
    1646 Chain information for Structure_20SCP_preholo_mature_beta-
    1647 subunits_docked_split O #3.15 
    1648 --- 
    1649 Chain | Description 
    1650 O | No description available 
    1651  
    1652 Chain information for Structure_20SCP_preholo_mature_beta-
    1653 subunits_docked_split P #3.16 
    1654 --- 
    1655 Chain | Description 
    1656 P | No description available 
    1657  
    1658 Chain information for Structure_20SCP_preholo_mature_beta-
    1659 subunits_docked_split Q #3.17 
    1660 --- 
    1661 Chain | Description 
    1662 Q | No description available 
    1663  
    1664 Chain information for Structure_20SCP_preholo_mature_beta-
    1665 subunits_docked_split R #3.18 
    1666 --- 
    1667 Chain | Description 
    1668 R | No description available 
    1669  
    1670 Chain information for Structure_20SCP_preholo_mature_beta-
    1671 subunits_docked_split S #3.19 
    1672 --- 
    1673 Chain | Description 
    1674 S | No description available 
    1675  
    1676 Chain information for Structure_20SCP_preholo_mature_beta-
    1677 subunits_docked_split T #3.20 
    1678 --- 
    1679 Chain | Description 
    1680 T | No description available 
    1681  
    1682 Chain information for Structure_20SCP_preholo_mature_beta-
    1683 subunits_docked_split U #3.21 
    1684 --- 
    1685 Chain | Description 
    1686 U | No description available 
    1687  
    1688 Chain information for Structure_20SCP_preholo_mature_beta-
    1689 subunits_docked_split V #3.22 
    1690 --- 
    1691 Chain | Description 
    1692 V | No description available 
    1693  
    1694 Chain information for Structure_20SCP_preholo_mature_beta-
    1695 subunits_docked_split W #3.23 
    1696 --- 
    1697 Chain | Description 
    1698 W | No description available 
    1699  
    1700 Chain information for Structure_20SCP_preholo_mature_beta-
    1701 subunits_docked_split X #3.24 
    1702 --- 
    1703 Chain | Description 
    1704 X | No description available 
    1705  
    1706 Chain information for Structure_20SCP_preholo_mature_beta-
    1707 subunits_docked_split Y #3.25 
    1708 --- 
    1709 Chain | Description 
    1710 Y | No description available 
    1711  
    1712 Chain information for Structure_20SCP_preholo_mature_beta-
    1713 subunits_docked_split Z #3.26 
    1714 --- 
    1715 Chain | Description 
    1716 Z | No description available 
    1717  
    1718 Chain information for Structure_20SCP_preholo_mature_beta-
    1719 subunits_docked_split a #3.27 
    1720 --- 
    1721 Chain | Description 
    1722 a | No description available 
    1723  
    1724 Chain information for Structure_20SCP_preholo_mature_beta-
    1725 subunits_docked_split b #3.28 
    1726 --- 
    1727 Chain | Description 
    1728 b | No description available 
    1729  
    1730 Chain information for Structure_20SCP_preholo_mature_beta-
    1731 subunits_docked_split c #3.29 
    1732 --- 
    1733 Chain | Description 
    1734 c | No description available 
    1735  
    1736 Chain information for Structure_20SCP_preholo_mature_beta-
    1737 subunits_docked_split d #3.30 
    1738 --- 
    1739 Chain | Description 
    1740 d | No description available 
    1741  
    1742 Chain information for Structure_20SCP_preholo_mature_beta-
    1743 subunits_docked_split e #3.31 
    1744 --- 
    1745 Chain | Description 
    1746 e | No description available 
    1747  
    1748 Chain information for Structure_20SCP_preholo_mature_beta-
    1749 subunits_docked_split f #3.32 
    1750 --- 
    1751 Chain | Description 
    1752 f | No description available 
    1753  
    1754 Chain information for Structure_20SCP_preholo_mature_beta-
    1755 subunits_docked_split g #3.33 
    1756 --- 
    1757 Chain | Description 
    1758 g | No description available 
    1759  
    1760 Chain information for Structure_20SCP_preholo_mature_beta-
    1761 subunits_docked_split h #3.34 
    1762 --- 
    1763 Chain | Description 
    1764 h | No description available 
    1765  
    1766 
    1767 > show #!1 models
    1768 
    1769 > transparency 50
    1770 
    1771 > select add #3.1
    1772 
    1773 1727 atoms, 1766 bonds, 229 residues, 1 model selected 
    1774 
    1775 > combine #2
    1776 
    1777 > select add #3
    1778 
    1779 56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 43 models selected 
    1780 
    1781 > select subtract #3
    1782 
    1783 Nothing selected 
    1784 
    1785 > hide #!3 models
    1786 
    1787 > hide #!4 models
    1788 
    1789 > show #!4 models
    1790 
    1791 > hide #!4 models
    1792 
    1793 > show #!4 models
    1794 
    1795 > hide #!4 models
    1796 
    1797 > close #2
    1798 
    1799 > rename #3 Structure_20SCP_preholo_mature_beta-subunits_docked
    1800 
    1801 > rename #4 Structure_20SCP_preholo_2xMap5_docked
    1802 
    1803 > rename #4 id #2
    1804 
    1805 > show #!3 models
    1806 
    1807 > select add #3
    1808 
    1809 56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 43 models selected 
    1810 
    1811 > select subtract #3
    1812 
    1813 Nothing selected 
    1814 
    1815 > select add #3.1
    1816 
    1817 1727 atoms, 1766 bonds, 229 residues, 1 model selected 
    1818 
    1819 > open
    1820 > /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_Map5x2_docked.pdb
    1821 
    1822 Chain information for Structure_20SCP_preholo_Map5x2_docked.pdb #4 
    1823 --- 
    1824 Chain | Description 
    1825 A R | No description available 
    1826 B S | No description available 
    1827 C T | No description available 
    1828 D U | No description available 
    1829 E V | No description available 
    1830 F W | No description available 
    1831 G X | No description available 
    1832 H Y | No description available 
    1833 I Z | No description available 
    1834 J a | No description available 
    1835 K b | No description available 
    1836 L c | No description available 
    1837 M d | No description available 
    1838 N e | No description available 
    1839 O f | No description available 
    1840 P g | No description available 
    1841 Q h | No description available 
    1842  
    1843 
    1844 > hide #!4 models
    1845 
    1846 > close #4
    1847 
    1848 > fitmap #3.1 inMap #1
    1849 
    1850 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split A
    1851 (#3.1) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    1852 using 1727 atoms 
    1853 average map value = 0.3128, steps = 44 
    1854 shifted from previous position = 0.22 
    1855 rotated from previous position = 0.438 degrees 
    1856 atoms outside contour = 378, contour level = 0.12772 
    1857  
    1858 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split A (#3.1)
    1859 relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    1860 coordinates: 
    1861 Matrix rotation and translation 
    1862 0.99999366 0.00330766 -0.00132116 -0.14380031 
    1863 -0.00331653 0.99997159 -0.00676931 1.36502836 
    1864 0.00129874 0.00677365 0.99997622 -0.92005519 
    1865 Axis 0.88503674 -0.17121145 -0.43289331 
    1866 Axis point 0.00000000 134.15368166 202.03015126 
    1867 Rotation angle (degrees) 0.43837830 
    1868 Shift along axis 0.03730868 
    1869  
    1870 
    1871 > select add #3
    1872 
    1873 56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 43 models selected 
    1874 
    1875 > select subtract #3
    1876 
    1877 Nothing selected 
    1878 
    1879 > select add #3.2
    1880 
    1881 1762 atoms, 1789 bonds, 1 pseudobond, 242 residues, 2 models selected 
    1882 
    1883 > fitmap #3.2 inMap #1
    1884 
    1885 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split B
    1886 (#3.2) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    1887 using 1762 atoms 
    1888 average map value = 0.3063, steps = 48 
    1889 shifted from previous position = 0.208 
    1890 rotated from previous position = 0.132 degrees 
    1891 atoms outside contour = 380, contour level = 0.12772 
    1892  
    1893 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split B (#3.2)
    1894 relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    1895 coordinates: 
    1896 Matrix rotation and translation 
    1897 0.99999736 0.00168742 -0.00156034 0.06358106 
    1898 -0.00168724 0.99999857 0.00011938 0.02704562 
    1899 0.00156054 -0.00011675 0.99999878 -0.28530675 
    1900 Axis -0.05130437 -0.67806866 -0.73320581 
    1901 Axis point 91.45420342 -43.23971739 0.00000000 
    1902 Rotation angle (degrees) 0.13185507 
    1903 Shift along axis 0.18758779 
    1904  
    1905 
    1906 > select add #3.3
    1907 
    1908 3494 atoms, 3544 bonds, 1 pseudobond, 475 residues, 3 models selected 
    1909 
    1910 > select subtract #3.2
    1911 
    1912 1732 atoms, 1755 bonds, 233 residues, 1 model selected 
    1913 
    1914 > fitmap #3.3 inMap #1
    1915 
    1916 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split C
    1917 (#3.3) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    1918 using 1732 atoms 
    1919 average map value = 0.2874, steps = 44 
    1920 shifted from previous position = 0.0824 
    1921 rotated from previous position = 0.704 degrees 
    1922 atoms outside contour = 431, contour level = 0.12772 
    1923  
    1924 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split C (#3.3)
    1925 relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    1926 coordinates: 
    1927 Matrix rotation and translation 
    1928 0.99993794 0.01083104 0.00260746 -1.79445784 
    1929 -0.01084439 0.99992787 0.00516316 0.10811094 
    1930 -0.00255135 -0.00519112 0.99998327 0.91504149 
    1931 Axis -0.42143219 0.20997001 -0.88221738 
    1932 Axis point 9.40798610 166.83329063 0.00000000 
    1933 Rotation angle (degrees) 0.70387533 
    1934 Shift along axis -0.02832314 
    1935  
    1936 
    1937 > select add #3.4
    1938 
    1939 3479 atoms, 3530 bonds, 1 pseudobond, 468 residues, 3 models selected 
    1940 
    1941 > select subtract #3.3
    1942 
    1943 1747 atoms, 1775 bonds, 1 pseudobond, 235 residues, 2 models selected 
    1944 
    1945 > fitmap #3.4 inMap #1
    1946 
    1947 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split D
    1948 (#3.4) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    1949 using 1747 atoms 
    1950 average map value = 0.2892, steps = 48 
    1951 shifted from previous position = 0.13 
    1952 rotated from previous position = 0.336 degrees 
    1953 atoms outside contour = 433, contour level = 0.12772 
    1954  
    1955 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split D (#3.4)
    1956 relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    1957 coordinates: 
    1958 Matrix rotation and translation 
    1959 0.99999155 -0.00409063 -0.00041466 0.62938032 
    1960 0.00409233 0.99998288 0.00418225 -1.07611994 
    1961 0.00039755 -0.00418391 0.99999117 0.61687471 
    1962 Axis -0.71317510 -0.06923662 0.69755829 
    1963 Axis point 0.00000000 137.56836617 256.94324536 
    1964 Rotation angle (degrees) 0.33606649 
    1965 Shift along axis 0.05595459 
    1966  
    1967 
    1968 > select subtract #3.4
    1969 
    1970 Nothing selected 
    1971 
    1972 > select add #3.5
    1973 
    1974 1832 atoms, 1867 bonds, 238 residues, 1 model selected 
    1975 
    1976 > fitmap #3.5 inMap #1
    1977 
    1978 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split E
    1979 (#3.5) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    1980 using 1832 atoms 
    1981 average map value = 0.3119, steps = 44 
    1982 shifted from previous position = 0.0926 
    1983 rotated from previous position = 0.178 degrees 
    1984 atoms outside contour = 404, contour level = 0.12772 
    1985  
    1986 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split E (#3.5)
    1987 relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    1988 coordinates: 
    1989 Matrix rotation and translation 
    1990 0.99999615 0.00271585 -0.00057558 -0.35881395 
    1991 -0.00271664 0.99999537 -0.00137462 0.53829088 
    1992 0.00057185 0.00137618 0.99999889 -0.22498126 
    1993 Axis 0.44393518 -0.18517716 -0.87671602 
    1994 Axis point 193.72984616 122.30380727 0.00000000 
    1995 Rotation angle (degrees) 0.17751425 
    1996 Shift along axis -0.06172464 
    1997  
    1998 
    1999 > fitmap #3.6 inMap #1
    2000 
    2001 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split F
    2002 (#3.6) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2003 using 1834 atoms 
    2004 average map value = 0.2952, steps = 44 
    2005 shifted from previous position = 0.183 
    2006 rotated from previous position = 0.331 degrees 
    2007 atoms outside contour = 430, contour level = 0.12772 
    2008  
    2009 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split F (#3.6)
    2010 relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2011 coordinates: 
    2012 Matrix rotation and translation 
    2013 0.99999304 -0.00356288 0.00110672 0.18132674 
    2014 0.00356774 0.99998387 -0.00441914 0.13941919 
    2015 -0.00109096 0.00442306 0.99998962 -0.53508668 
    2016 Axis 0.76424900 0.18994995 0.61631363 
    2017 Axis point 0.00000000 98.11421519 38.27107754 
    2018 Rotation angle (degrees) 0.33145177 
    2019 Shift along axis -0.16471977 
    2020  
    2021 
    2022 > select subtract #3.5
    2023 
    2024 Nothing selected 
    2025 
    2026 > select add #3.6
    2027 
    2028 1834 atoms, 1869 bonds, 240 residues, 1 model selected 
    2029 
    2030 > fitmap #3.6 inMap #1
    2031 
    2032 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split F
    2033 (#3.6) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2034 using 1834 atoms 
    2035 average map value = 0.2952, steps = 40 
    2036 shifted from previous position = 0.0304 
    2037 rotated from previous position = 0.0338 degrees 
    2038 atoms outside contour = 426, contour level = 0.12772 
    2039  
    2040 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split F (#3.6)
    2041 relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2042 coordinates: 
    2043 Matrix rotation and translation 
    2044 0.99999177 -0.00397895 0.00079152 0.27163063 
    2045 0.00398220 0.99998349 -0.00414250 0.03044151 
    2046 -0.00077502 0.00414561 0.99999111 -0.52652750 
    2047 Axis 0.71458065 0.13506342 0.68639083 
    2048 Axis point 0.00000000 100.01522593 12.27070894 
    2049 Rotation angle (degrees) 0.33227620 
    2050 Shift along axis -0.16319012 
    2051  
    2052 
    2053 > select subtract #3.6
    2054 
    2055 Nothing selected 
    2056 
    2057 > select add #3.7
    2058 
    2059 1838 atoms, 1871 bonds, 244 residues, 1 model selected 
    2060 
    2061 > fitmap #3.7 inMap #1
    2062 
    2063 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split G
    2064 (#3.7) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2065 using 1838 atoms 
    2066 average map value = 0.2873, steps = 40 
    2067 shifted from previous position = 0.119 
    2068 rotated from previous position = 0.643 degrees 
    2069 atoms outside contour = 482, contour level = 0.12772 
    2070  
    2071 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split G (#3.7)
    2072 relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2073 coordinates: 
    2074 Matrix rotation and translation 
    2075 0.99993907 -0.01094111 -0.00146368 1.39015266 
    2076 0.01093816 0.99993816 -0.00200646 -1.15662249 
    2077 0.00148554 0.00199033 0.99999692 -0.47534195 
    2078 Axis 0.17814164 -0.13145059 0.97518526 
    2079 Axis point 107.23024107 127.50045829 0.00000000 
    2080 Rotation angle (degrees) 0.64275788 
    2081 Shift along axis -0.06386368 
    2082  
    2083 
    2084 > select add #3.8
    2085 
    2086 2739 atoms, 2787 bonds, 357 residues, 2 models selected 
    2087 
    2088 > select subtract #3.7
    2089 
    2090 901 atoms, 916 bonds, 113 residues, 1 model selected 
    2091 
    2092 > fitmap #3.8 inMap #1
    2093 
    2094 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split H
    2095 (#3.8) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2096 using 901 atoms 
    2097 average map value = 0.1819, steps = 40 
    2098 shifted from previous position = 0.0732 
    2099 rotated from previous position = 0.428 degrees 
    2100 atoms outside contour = 400, contour level = 0.12772 
    2101  
    2102 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split H (#3.8)
    2103 relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2104 coordinates: 
    2105 Matrix rotation and translation 
    2106 0.99997232 -0.00623841 -0.00405467 1.42973023 
    2107 0.00624096 0.99998033 0.00061780 -0.87614401 
    2108 0.00405074 -0.00064309 0.99999159 -0.42192718 
    2109 Axis -0.08443128 -0.54275137 0.83563886 
    2110 Axis point 140.91191250 228.58696563 0.00000000 
    2111 Rotation angle (degrees) 0.42782947 
    2112 Shift along axis 0.00223566 
    2113  
    2114 
    2115 > select subtract #3.8
    2116 
    2117 Nothing selected 
    2118 
    2119 > select add #3.9
    2120 
    2121 1994 atoms, 2036 bonds, 3 pseudobonds, 264 residues, 2 models selected 
    2122 
    2123 > fitmap #3.9 inMap #1
    2124 
    2125 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split I
    2126 (#3.9) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2127 using 1994 atoms 
    2128 average map value = 0.127, steps = 44 
    2129 shifted from previous position = 0.165 
    2130 rotated from previous position = 0.504 degrees 
    2131 atoms outside contour = 1134, contour level = 0.12772 
    2132  
    2133 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split I (#3.9)
    2134 relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2135 coordinates: 
    2136 Matrix rotation and translation 
    2137 0.99999025 -0.00190053 0.00398675 -0.52580936 
    2138 0.00193081 0.99996922 -0.00760474 1.06270195 
    2139 -0.00397218 0.00761236 0.99996314 -0.66569808 
    2140 Axis 0.86485378 0.45234062 0.21775192 
    2141 Axis point 0.00000000 84.75491758 146.47748803 
    2142 Rotation angle (degrees) 0.50406588 
    2143 Shift along axis -0.11900199 
    2144  
    2145 
    2146 > select add #3.10
    2147 
    2148 3877 atoms, 3959 bonds, 5 pseudobonds, 512 residues, 4 models selected 
    2149 
    2150 > select subtract #3.9
    2151 
    2152 1883 atoms, 1923 bonds, 2 pseudobonds, 248 residues, 2 models selected 
    2153 
    2154 > fitmap #3.10 inMap #1
    2155 
    2156 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split J
    2157 (#3.10) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2158 using 1883 atoms 
    2159 average map value = 0.144, steps = 44 
    2160 shifted from previous position = 0.181 
    2161 rotated from previous position = 0.341 degrees 
    2162 atoms outside contour = 988, contour level = 0.12772 
    2163  
    2164 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split J
    2165 (#3.10) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2166 (#1) coordinates: 
    2167 Matrix rotation and translation 
    2168 0.99998366 -0.00117162 -0.00559485 0.93178316 
    2169 0.00116236 0.99999795 -0.00165798 0.03346493 
    2170 0.00559678 0.00165145 0.99998297 -0.68303067 
    2171 Axis 0.27806191 -0.94033236 0.19610363 
    2172 Axis point 125.81370784 0.00000000 161.51974162 
    2173 Rotation angle (degrees) 0.34096295 
    2174 Shift along axis 0.09368046 
    2175  
    2176 
    2177 > select subtract #3.10
    2178 
    2179 Nothing selected 
    2180 
    2181 > select add #3.11
    2182 
    2183 1659 atoms, 1686 bonds, 220 residues, 1 model selected 
    2184 
    2185 > fitmap #3.11 inMap #1
    2186 
    2187 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split K
    2188 (#3.11) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2189 using 1659 atoms 
    2190 average map value = 0.3052, steps = 48 
    2191 shifted from previous position = 0.179 
    2192 rotated from previous position = 0.715 degrees 
    2193 atoms outside contour = 400, contour level = 0.12772 
    2194  
    2195 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split K
    2196 (#3.11) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2197 (#1) coordinates: 
    2198 Matrix rotation and translation 
    2199 0.99994918 0.00650650 -0.00770025 -0.17210017 
    2200 -0.00644976 0.99995203 0.00737077 -0.07791740 
    2201 0.00774784 -0.00732073 0.99994319 0.42225168 
    2202 Axis -0.58891059 -0.61923846 -0.51935349 
    2203 Axis point -50.02791844 0.00000000 -27.35017379 
    2204 Rotation angle (degrees) 0.71469496 
    2205 Shift along axis -0.06969682 
    2206  
    2207 
    2208 > fitmap #3.12 inMap #1
    2209 
    2210 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split L
    2211 (#3.12) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2212 using 1591 atoms 
    2213 average map value = 0.3263, steps = 48 
    2214 shifted from previous position = 0.328 
    2215 rotated from previous position = 0.653 degrees 
    2216 atoms outside contour = 317, contour level = 0.12772 
    2217  
    2218 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split L
    2219 (#3.12) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2220 (#1) coordinates: 
    2221 Matrix rotation and translation 
    2222 0.99997842 0.00604397 0.00257548 -1.89003372 
    2223 -0.00601971 0.99993842 -0.00932293 2.76720563 
    2224 -0.00263167 0.00930723 0.99995322 -1.25549058 
    2225 Axis 0.81719916 0.22840789 -0.52916478 
    2226 Axis point 0.00000000 150.51839485 301.90168710 
    2227 Rotation angle (degrees) 0.65311674 
    2228 Shift along axis -0.24812096 
    2229  
    2230 
    2231 > fitmap #3.13 inMap #1
    2232 
    2233 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split M
    2234 (#3.13) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2235 using 1561 atoms 
    2236 average map value = 0.3273, steps = 48 
    2237 shifted from previous position = 0.172 
    2238 rotated from previous position = 0.846 degrees 
    2239 atoms outside contour = 321, contour level = 0.12772 
    2240  
    2241 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split M
    2242 (#3.13) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2243 (#1) coordinates: 
    2244 Matrix rotation and translation 
    2245 0.99998024 -0.00605149 0.00170467 0.57642528 
    2246 0.00602817 0.99989250 0.01336633 -3.67034980 
    2247 -0.00178538 -0.01335579 0.99990921 2.72351120 
    2248 Axis -0.90483678 0.11817644 0.40902901 
    2249 Axis point 0.00000000 197.17349122 277.58547360 
    2250 Rotation angle (degrees) 0.84607532 
    2251 Shift along axis 0.15867542 
    2252  
    2253 
    2254 > fitmap #3.13 inMap #1
    2255 
    2256 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split M
    2257 (#3.13) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2258 using 1561 atoms 
    2259 average map value = 0.3273, steps = 40 
    2260 shifted from previous position = 0.00793 
    2261 rotated from previous position = 0.00911 degrees 
    2262 atoms outside contour = 321, contour level = 0.12772 
    2263  
    2264 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split M
    2265 (#3.13) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2266 (#1) coordinates: 
    2267 Matrix rotation and translation 
    2268 0.99998120 -0.00590852 0.00164176 0.55953111 
    2269 0.00588600 0.99989295 0.01339567 -3.64876373 
    2270 -0.00172073 -0.01338575 0.99990893 2.71299548 
    2271 Axis -0.90919795 0.11415268 0.40041011 
    2272 Axis point 0.00000000 195.98646947 275.32261443 
    2273 Rotation angle (degrees) 0.84388555 
    2274 Shift along axis 0.16107014 
    2275  
    2276 
    2277 > fitmap #3.14 inMap #1
    2278 
    2279 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split N
    2280 (#3.14) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2281 using 1543 atoms 
    2282 average map value = 0.3374, steps = 48 
    2283 shifted from previous position = 0.182 
    2284 rotated from previous position = 0.437 degrees 
    2285 atoms outside contour = 301, contour level = 0.12772 
    2286  
    2287 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split N
    2288 (#3.14) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2289 (#1) coordinates: 
    2290 Matrix rotation and translation 
    2291 0.99998173 -0.00595203 -0.00105854 1.26087681 
    2292 0.00595688 0.99997150 0.00463747 -1.98605307 
    2293 0.00103090 -0.00464369 0.99998869 0.63150299 
    2294 Axis -0.60890776 -0.13708156 0.78130659 
    2295 Axis point 334.46098882 210.59719947 0.00000000 
    2296 Rotation angle (degrees) 0.43666389 
    2297 Shift along axis -0.00210896 
    2298  
    2299 
    2300 > fitmap #3.14 inMap #1
    2301 
    2302 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split N
    2303 (#3.14) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2304 using 1543 atoms 
    2305 average map value = 0.3376, steps = 36 
    2306 shifted from previous position = 0.0309 
    2307 rotated from previous position = 0.0334 degrees 
    2308 atoms outside contour = 301, contour level = 0.12772 
    2309  
    2310 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split N
    2311 (#3.14) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2312 (#1) coordinates: 
    2313 Matrix rotation and translation 
    2314 0.99998458 -0.00551152 -0.00067757 1.13868134 
    2315 0.00551461 0.99997402 0.00464154 -1.91870976 
    2316 0.00065197 -0.00464521 0.99998900 0.68638126 
    2317 Axis -0.64147798 -0.09183677 0.76162458 
    2318 Axis point 349.40769406 201.96051067 0.00000000 
    2319 Rotation angle (degrees) 0.41474241 
    2320 Shift along axis -0.03146606 
    2321  
    2322 
    2323 > fitmap #3.15 inMap #1
    2324 
    2325 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split O
    2326 (#3.15) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2327 using 1650 atoms 
    2328 average map value = 0.3232, steps = 44 
    2329 shifted from previous position = 0.202 
    2330 rotated from previous position = 0.445 degrees 
    2331 atoms outside contour = 363, contour level = 0.12772 
    2332  
    2333 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split O
    2334 (#3.15) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2335 (#1) coordinates: 
    2336 Matrix rotation and translation 
    2337 0.99997298 -0.00634150 0.00371834 0.36313262 
    2338 0.00635088 0.99997667 -0.00251589 -0.96453011 
    2339 -0.00370230 0.00253944 0.99998992 0.34956678 
    2340 Axis 0.32515827 0.47729464 0.81637120 
    2341 Axis point 147.81504542 59.55128108 -0.00000000 
    2342 Rotation angle (degrees) 0.44540209 
    2343 Shift along axis -0.05691322 
    2344  
    2345 
    2346 > fitmap #3.16 inMap #1
    2347 
    2348 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split P
    2349 (#3.16) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2350 using 1686 atoms 
    2351 average map value = 0.3142, steps = 40 
    2352 shifted from previous position = 0.257 
    2353 rotated from previous position = 0.221 degrees 
    2354 atoms outside contour = 402, contour level = 0.12772 
    2355  
    2356 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split P
    2357 (#3.16) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2358 (#1) coordinates: 
    2359 Matrix rotation and translation 
    2360 0.99999791 0.00183184 -0.00090710 0.08553980 
    2361 -0.00183480 0.99999297 -0.00327059 0.85990652 
    2362 0.00090110 0.00327225 0.99999424 -0.54844214 
    2363 Axis 0.84805774 -0.23437153 -0.47525578 
    2364 Axis point 0.00000000 148.96131989 272.03471598 
    2365 Rotation angle (degrees) 0.22102178 
    2366 Shift along axis 0.13165537 
    2367  
    2368 
    2369 > fitmap #3.17 inMap #1
    2370 
    2371 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split Q
    2372 (#3.17) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2373 using 1514 atoms 
    2374 average map value = 0.308, steps = 48 
    2375 shifted from previous position = 0.321 
    2376 rotated from previous position = 0.59 degrees 
    2377 atoms outside contour = 359, contour level = 0.12772 
    2378  
    2379 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split Q
    2380 (#3.17) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2381 (#1) coordinates: 
    2382 Matrix rotation and translation 
    2383 0.99998361 -0.00387529 0.00421437 0.05990991 
    2384 0.00391121 0.99995582 -0.00854747 0.56418186 
    2385 -0.00418106 0.00856381 0.99995459 -0.48092873 
    2386 Axis 0.83108672 0.40776175 0.37818676 
    2387 Axis point 0.00000000 60.80788484 61.01813306 
    2388 Rotation angle (degrees) 0.58984305 
    2389 Shift along axis 0.09796123 
    2390  
    2391 
    2392 > fitmap #3.18 inMap #1
    2393 
    2394 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split R
    2395 (#3.18) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2396 using 1727 atoms 
    2397 average map value = 0.3156, steps = 40 
    2398 shifted from previous position = 0.195 
    2399 rotated from previous position = 0.38 degrees 
    2400 atoms outside contour = 369, contour level = 0.12772 
    2401  
    2402 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split R
    2403 (#3.18) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2404 (#1) coordinates: 
    2405 Matrix rotation and translation 
    2406 0.99999534 0.00294688 0.00080312 -0.77167156 
    2407 -0.00295155 0.99997837 0.00587715 -0.24314207 
    2408 -0.00078578 -0.00587949 0.99998241 1.35802759 
    2409 Axis -0.88736410 0.11992617 -0.44519958 
    2410 Axis point 0.00000000 234.70952234 43.27515594 
    2411 Rotation angle (degrees) 0.37955697 
    2412 Shift along axis 0.05100122 
    2413  
    2414 
    2415 > fitmap #3.19 inMap #1
    2416 
    2417 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split S
    2418 (#3.19) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2419 using 1762 atoms 
    2420 average map value = 0.3058, steps = 40 
    2421 shifted from previous position = 0.159 
    2422 rotated from previous position = 0.0602 degrees 
    2423 atoms outside contour = 373, contour level = 0.12772 
    2424  
    2425 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split S
    2426 (#3.19) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2427 (#1) coordinates: 
    2428 Matrix rotation and translation 
    2429 0.99999961 0.00067251 0.00057892 -0.25282186 
    2430 -0.00067218 0.99999962 -0.00056304 0.37343398 
    2431 -0.00057930 0.00056265 0.99999967 -0.08946434 
    2432 Axis 0.53562726 0.55110572 -0.63983273 
    2433 Axis point 450.64644939 477.85366089 0.00000000 
    2434 Rotation angle (degrees) 0.06020694 
    2435 Shift along axis 0.12762553 
    2436  
    2437 
    2438 > fitmap #3.20 inMap #1
    2439 
    2440 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split T
    2441 (#3.20) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2442 using 1732 atoms 
    2443 average map value = 0.2868, steps = 48 
    2444 shifted from previous position = 0.0801 
    2445 rotated from previous position = 0.693 degrees 
    2446 atoms outside contour = 439, contour level = 0.12772 
    2447  
    2448 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split T
    2449 (#3.20) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2450 (#1) coordinates: 
    2451 Matrix rotation and translation 
    2452 0.99993548 0.01060625 -0.00406670 -1.29189145 
    2453 -0.01062299 0.99993510 -0.00411568 3.06072041 
    2454 0.00402279 0.00415862 0.99998326 -1.60324900 
    2455 Axis 0.34222166 -0.33457806 -0.87803295 
    2456 Axis point 285.53805305 121.65542767 0.00000000 
    2457 Rotation angle (degrees) 0.69267070 
    2458 Shift along axis -0.05845769 
    2459  
    2460 
    2461 > fitmap #3.21 inMap #1
    2462 
    2463 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split U
    2464 (#3.21) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2465 using 1747 atoms 
    2466 average map value = 0.2874, steps = 48 
    2467 shifted from previous position = 0.148 
    2468 rotated from previous position = 0.391 degrees 
    2469 atoms outside contour = 431, contour level = 0.12772 
    2470  
    2471 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split U
    2472 (#3.21) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2473 (#1) coordinates: 
    2474 Matrix rotation and translation 
    2475 0.99998621 -0.00451830 -0.00267572 1.32128833 
    2476 0.00450661 0.99998035 -0.00435717 -0.26962975 
    2477 0.00269536 0.00434505 0.99998693 -1.25929759 
    2478 Axis 0.63803288 -0.39379921 0.66169194 
    2479 Axis point 50.90167341 275.90346830 0.00000000 
    2480 Rotation angle (degrees) 0.39073568 
    2481 Shift along axis 0.11593833 
    2482  
    2483 
    2484 > fitmap #3.22 inMap #1
    2485 
    2486 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split V
    2487 (#3.22) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2488 using 1832 atoms 
    2489 average map value = 0.3088, steps = 40 
    2490 shifted from previous position = 0.0712 
    2491 rotated from previous position = 0.287 degrees 
    2492 atoms outside contour = 402, contour level = 0.12772 
    2493  
    2494 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split V
    2495 (#3.22) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2496 (#1) coordinates: 
    2497 Matrix rotation and translation 
    2498 0.99999084 0.00391157 0.00174008 -0.88560719 
    2499 -0.00391608 0.99998896 0.00259665 0.43034209 
    2500 -0.00172991 -0.00260344 0.99999511 0.84980951 
    2501 Axis -0.51909131 0.34638662 -0.78138372 
    2502 Axis point 114.11860349 234.00694257 0.00000000 
    2503 Rotation angle (degrees) 0.28698626 
    2504 Shift along axis -0.05525158 
    2505  
    2506 
    2507 > fitmap #3.23 inMap #1
    2508 
    2509 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split W
    2510 (#3.23) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2511 using 1834 atoms 
    2512 average map value = 0.2906, steps = 40 
    2513 shifted from previous position = 0.128 
    2514 rotated from previous position = 0.255 degrees 
    2515 atoms outside contour = 451, contour level = 0.12772 
    2516  
    2517 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split W
    2518 (#3.23) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2519 (#1) coordinates: 
    2520 Matrix rotation and translation 
    2521 0.99999917 -0.00127948 0.00013013 0.30535055 
    2522 0.00127891 0.99999008 0.00426580 -0.75929935 
    2523 -0.00013559 -0.00426563 0.99999089 0.80565163 
    2524 Axis -0.95743226 0.02982097 0.28711352 
    2525 Axis point 0.00000000 194.12342737 177.86334795 
    2526 Rotation angle (degrees) 0.25527454 
    2527 Shift along axis -0.08368203 
    2528  
    2529 
    2530 > fitmap #3.24 inMap #1
    2531 
    2532 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split X
    2533 (#3.24) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2534 using 1838 atoms 
    2535 average map value = 0.284, steps = 48 
    2536 shifted from previous position = 0.128 
    2537 rotated from previous position = 0.688 degrees 
    2538 atoms outside contour = 495, contour level = 0.12772 
    2539  
    2540 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split X
    2541 (#3.24) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2542 (#1) coordinates: 
    2543 Matrix rotation and translation 
    2544 0.99993384 -0.01112821 0.00291240 1.92171681 
    2545 0.01111805 0.99993212 0.00348405 -2.53052238 
    2546 -0.00295097 -0.00345144 0.99998969 1.19772259 
    2547 Axis -0.28863440 0.24401555 0.92582212 
    2548 Axis point 227.25208412 169.69625843 0.00000000 
    2549 Rotation angle (degrees) 0.68838674 
    2550 Shift along axis -0.06328231 
    2551  
    2552 
    2553 > fitmap #3.25 inMap #1
    2554 
    2555 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split Y
    2556 (#3.25) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2557 using 901 atoms 
    2558 average map value = 0.1798, steps = 44 
    2559 shifted from previous position = 0.136 
    2560 rotated from previous position = 0.314 degrees 
    2561 atoms outside contour = 401, contour level = 0.12772 
    2562  
    2563 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split Y
    2564 (#3.25) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2565 (#1) coordinates: 
    2566 Matrix rotation and translation 
    2567 0.99998580 -0.00428211 0.00317277 0.29744538 
    2568 0.00428624 0.99998997 -0.00129572 -0.69695270 
    2569 -0.00316719 0.00130930 0.99999413 0.38577609 
    2570 Axis 0.23741199 0.57779906 0.78088655 
    2571 Axis point 158.61100397 70.64580159 0.00000000 
    2572 Rotation angle (degrees) 0.31434332 
    2573 Shift along axis -0.03083415 
    2574  
    2575 
    2576 > fitmap #3.26 inMap #1
    2577 
    2578 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split Z
    2579 (#3.26) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2580 using 1994 atoms 
    2581 average map value = 0.1295, steps = 48 
    2582 shifted from previous position = 0.147 
    2583 rotated from previous position = 0.468 degrees 
    2584 atoms outside contour = 1126, contour level = 0.12772 
    2585  
    2586 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split Z
    2587 (#3.26) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2588 (#1) coordinates: 
    2589 Matrix rotation and translation 
    2590 0.99999327 -0.00211651 -0.00299800 0.96996747 
    2591 0.00213833 0.99997110 0.00729499 -1.67106386 
    2592 0.00298247 -0.00730135 0.99996890 0.68725120 
    2593 Axis -0.89341047 -0.36605197 0.26042981 
    2594 Axis point 0.00000000 95.84031181 233.25849435 
    2595 Rotation angle (degrees) 0.46804776 
    2596 Shift along axis -0.07590218 
    2597  
    2598 
    2599 > fitmap #3.27 inMap #1
    2600 
    2601 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split a
    2602 (#3.27) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2603 using 1883 atoms 
    2604 average map value = 0.1535, steps = 48 
    2605 shifted from previous position = 0.0671 
    2606 rotated from previous position = 0.249 degrees 
    2607 atoms outside contour = 940, contour level = 0.12772 
    2608  
    2609 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split a
    2610 (#3.27) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2611 (#1) coordinates: 
    2612 Matrix rotation and translation 
    2613 0.99999109 -0.00051452 0.00418990 -0.54205287 
    2614 0.00051033 0.99999937 0.00099994 -0.22463103 
    2615 -0.00419041 -0.00099780 0.99999072 1.18124408 
    2616 Axis -0.23026384 0.96593210 0.11812593 
    2617 Axis point 280.27471293 0.00000000 127.36388738 
    2618 Rotation angle (degrees) 0.24854647 
    2619 Shift along axis 0.04737241 
    2620  
    2621 
    2622 > fitmap #3.28 inMap #1
    2623 
    2624 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split b
    2625 (#3.28) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2626 using 1659 atoms 
    2627 average map value = 0.3136, steps = 60 
    2628 shifted from previous position = 0.229 
    2629 rotated from previous position = 0.701 degrees 
    2630 atoms outside contour = 378, contour level = 0.12772 
    2631  
    2632 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split b
    2633 (#3.28) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2634 (#1) coordinates: 
    2635 Matrix rotation and translation 
    2636 0.99994731 0.00642010 0.00800935 -1.81609946 
    2637 -0.00636665 0.99995742 -0.00668052 2.13777762 
    2638 -0.00805190 0.00662917 0.99994561 0.69461762 
    2639 Axis 0.54399526 0.65645708 -0.52262152 
    2640 Axis point 88.10825820 0.00000000 230.88525685 
    2641 Rotation angle (degrees) 0.70093259 
    2642 Shift along axis 0.05238765 
    2643  
    2644 
    2645 > fitmap #3.29 inMap #1
    2646 
    2647 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split c
    2648 (#3.29) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2649 using 1591 atoms 
    2650 average map value = 0.3329, steps = 48 
    2651 shifted from previous position = 0.389 
    2652 rotated from previous position = 0.668 degrees 
    2653 atoms outside contour = 319, contour level = 0.12772 
    2654  
    2655 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split c
    2656 (#3.29) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2657 (#1) coordinates: 
    2658 Matrix rotation and translation 
    2659 0.99998111 0.00563816 -0.00244575 0.11737615 
    2660 -0.00561363 0.99993500 0.00992429 -0.91316338 
    2661 0.00250154 -0.00991037 0.99994776 0.95912655 
    2662 Axis -0.85001952 -0.21201728 -0.48219861 
    2663 Axis point -0.00000000 78.31359490 100.40169372 
    2664 Rotation angle (degrees) 0.66849528 
    2665 Shift along axis -0.36865508 
    2666  
    2667 
    2668 > fitmap #3.30 inMap #1
    2669 
    2670 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split d
    2671 (#3.30) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2672 using 1561 atoms 
    2673 average map value = 0.3275, steps = 44 
    2674 shifted from previous position = 0.251 
    2675 rotated from previous position = 0.921 degrees 
    2676 atoms outside contour = 322, contour level = 0.12772 
    2677  
    2678 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split d
    2679 (#3.30) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2680 (#1) coordinates: 
    2681 Matrix rotation and translation 
    2682 0.99997995 -0.00549054 -0.00315645 1.65410232 
    2683 0.00544331 0.99987591 -0.01478317 2.27541943 
    2684 0.00323722 0.01476569 0.99988574 -2.47831874 
    2685 Axis 0.91912002 -0.19887563 0.34009832 
    2686 Axis point 0.00000000 174.22678705 155.48289538 
    2687 Rotation angle (degrees) 0.92104303 
    2688 Shift along axis 0.22492104 
    2689  
    2690 
    2691 > fitmap #3.31 inMap #1
    2692 
    2693 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split e
    2694 (#3.31) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2695 using 1543 atoms 
    2696 average map value = 0.3323, steps = 36 
    2697 shifted from previous position = 0.124 
    2698 rotated from previous position = 0.435 degrees 
    2699 atoms outside contour = 309, contour level = 0.12772 
    2700  
    2701 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split e
    2702 (#3.31) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2703 (#1) coordinates: 
    2704 Matrix rotation and translation 
    2705 0.99998308 -0.00580277 -0.00040991 0.98890388 
    2706 0.00580070 0.99997126 -0.00488086 0.29004400 
    2707 0.00043822 0.00487840 0.99998800 -0.75326971 
    2708 Axis 0.64266519 -0.05585037 0.76410876 
    2709 Axis point -49.60190473 165.71804976 0.00000000 
    2710 Rotation angle (degrees) 0.43504016 
    2711 Shift along axis 0.04375505 
    2712  
    2713 
    2714 > fitmap #3.31 inMap #1
    2715 
    2716 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split e
    2717 (#3.31) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2718 using 1543 atoms 
    2719 average map value = 0.3324, steps = 36 
    2720 shifted from previous position = 0.013 
    2721 rotated from previous position = 0.0456 degrees 
    2722 atoms outside contour = 309, contour level = 0.12772 
    2723  
    2724 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split e
    2725 (#3.31) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2726 (#1) coordinates: 
    2727 Matrix rotation and translation 
    2728 0.99998403 -0.00564795 -0.00019218 0.90966799 
    2729 0.00564711 0.99997552 -0.00413203 0.16334862 
    2730 0.00021551 0.00413087 0.99999144 -0.60928634 
    2731 Axis 0.59017668 -0.02911898 0.80674877 
    2732 Axis point -28.45500616 156.90293075 0.00000000 
    2733 Rotation angle (degrees) 0.40109442 
    2734 Shift along axis 0.04056728 
    2735  
    2736 
    2737 > fitmap #3.32 inMap #1
    2738 
    2739 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split f
    2740 (#3.32) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2741 using 1650 atoms 
    2742 average map value = 0.3184, steps = 44 
    2743 shifted from previous position = 0.251 
    2744 rotated from previous position = 0.42 degrees 
    2745 atoms outside contour = 370, contour level = 0.12772 
    2746  
    2747 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split f
    2748 (#3.32) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2749 (#1) coordinates: 
    2750 Matrix rotation and translation 
    2751 0.99997698 -0.00600947 -0.00315100 1.60984287 
    2752 0.00601816 0.99997809 0.00275610 -0.95270175 
    2753 0.00313437 -0.00277500 0.99999124 0.11268531 
    2754 Axis -0.37742650 -0.42889518 0.82073026 
    2755 Axis point 166.84326278 260.55637524 0.00000000 
    2756 Rotation angle (degrees) 0.41983229 
    2757 Shift along axis -0.10650394 
    2758  
    2759 
    2760 > fitmap #3.32 inMap #1
    2761 
    2762 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split f
    2763 (#3.32) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2764 using 1650 atoms 
    2765 average map value = 0.3184, steps = 40 
    2766 shifted from previous position = 0.0295 
    2767 rotated from previous position = 0.0352 degrees 
    2768 atoms outside contour = 369, contour level = 0.12772 
    2769  
    2770 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split f
    2771 (#3.32) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2772 (#1) coordinates: 
    2773 Matrix rotation and translation 
    2774 0.99998053 -0.00542468 -0.00308361 1.50252873 
    2775 0.00543374 0.99998093 0.00293496 -0.88545476 
    2776 0.00306763 -0.00295166 0.99999094 0.15328228 
    2777 Axis -0.42661632 -0.44579418 0.78693460 
    2778 Axis point 174.19873995 266.47322071 0.00000000 
    2779 Rotation angle (degrees) 0.39529759 
    2780 Shift along axis -0.12564956 
    2781  
    2782 
    2783 > fitmap #3.33 inMap #1
    2784 
    2785 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split g
    2786 (#3.33) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2787 using 1686 atoms 
    2788 average map value = 0.3197, steps = 40 
    2789 shifted from previous position = 0.172 
    2790 rotated from previous position = 0.296 degrees 
    2791 atoms outside contour = 396, contour level = 0.12772 
    2792  
    2793 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split g
    2794 (#3.33) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2795 (#1) coordinates: 
    2796 Matrix rotation and translation 
    2797 0.99999636 0.00230758 0.00140119 -0.70952798 
    2798 -0.00231373 0.99998763 0.00440309 -0.26801055 
    2799 -0.00139101 -0.00440631 0.99998932 1.02659594 
    2800 Axis -0.85259986 0.27023800 -0.44726379 
    2801 Axis point 0.00000000 240.26915395 66.04611291 
    2802 Rotation angle (degrees) 0.29600268 
    2803 Shift along axis 0.07335763 
    2804  
    2805 
    2806 > fitmap #3.33 inMap #1
    2807 
    2808 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split g
    2809 (#3.33) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2810 using 1686 atoms 
    2811 average map value = 0.3196, steps = 44 
    2812 shifted from previous position = 0.0223 
    2813 rotated from previous position = 0.0239 degrees 
    2814 atoms outside contour = 394, contour level = 0.12772 
    2815  
    2816 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split g
    2817 (#3.33) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2818 (#1) coordinates: 
    2819 Matrix rotation and translation 
    2820 0.99999612 0.00214130 0.00178424 -0.74733051 
    2821 -0.00214914 0.99998800 0.00440154 -0.30843292 
    2822 -0.00177480 -0.00440536 0.99998872 1.07695445 
    2823 Axis -0.84495949 0.34146507 -0.41163706 
    2824 Axis point 0.00000000 252.00683371 77.18658784 
    2825 Rotation angle (degrees) 0.29859435 
    2826 Shift along axis 0.08283057 
    2827  
    2828 
    2829 > fitmap #3.34 inMap #1
    2830 
    2831 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split h
    2832 (#3.34) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2833 using 1514 atoms 
    2834 average map value = 0.312, steps = 48 
    2835 shifted from previous position = 0.329 
    2836 rotated from previous position = 0.648 degrees 
    2837 atoms outside contour = 352, contour level = 0.12772 
    2838  
    2839 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split h
    2840 (#3.34) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2841 (#1) coordinates: 
    2842 Matrix rotation and translation 
    2843 0.99997658 -0.00482214 -0.00485588 1.46361826 
    2844 0.00486569 0.99994768 0.00899841 -1.92013472 
    2845 0.00481223 -0.00902183 0.99994772 0.87708748 
    2846 Axis -0.79634658 -0.42725094 0.42812236 
    2847 Axis point 0.00000000 94.54765875 212.49551592 
    2848 Rotation angle (degrees) 0.64827663 
    2849 Shift along axis 0.03033274 
    2850  
    2851 
    2852 > fitmap #3.34 inMap #1
    2853 
    2854 Fit molecule Structure_20SCP_preholo_mature_beta-subunits_docked_split h
    2855 (#3.34) to map cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1)
    2856 using 1514 atoms 
    2857 average map value = 0.3119, steps = 48 
    2858 shifted from previous position = 0.0447 
    2859 rotated from previous position = 0.0408 degrees 
    2860 atoms outside contour = 355, contour level = 0.12772 
    2861  
    2862 Position of Structure_20SCP_preholo_mature_beta-subunits_docked_split h
    2863 (#3.34) relative to cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc
    2864 (#1) coordinates: 
    2865 Matrix rotation and translation 
    2866 0.99998022 -0.00431631 -0.00457590 1.39114212 
    2867 0.00435926 0.99994615 0.00941783 -1.92120098 
    2868 0.00453500 -0.00943759 0.99994518 0.96484662 
    2869 Axis -0.83183811 -0.40194224 0.38273724 
    2870 Axis point 0.00000000 101.67937116 205.24807821 
    2871 Rotation angle (degrees) 0.64938057 
    2872 Shift along axis -0.01571047 
    2873  
    2874 
    2875 > select subtract #3.11
    2876 
    2877 Nothing selected 
    2878 
    2879 > hide #!3 models
    2880 
    2881 > show #!3 models
    2882 
    2883 > select add #3
    2884 
    2885 56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 43 models selected 
    2886 
    2887 > combine sel
    2888 
    2889 > rename #4 Structure_20SCP_preholo_mature_beta-subunits_docked
    2890 
    2891 > select add #4
    2892 
    2893 113816 atoms, 115920 bonds, 28 pseudobonds, 14956 residues, 45 models selected 
    2894 
    2895 > select subtract #3
    2896 
    2897 56908 atoms, 57960 bonds, 14 pseudobonds, 7478 residues, 2 models selected 
    2898 
    2899 > select subtract #4
    2900 
    2901 Nothing selected 
    2902 
    2903 > hide #!3 models
    2904 
    2905 > hide #!4 models
    2906 
    2907 > show #!4 models
    2908 
    2909 > show #!3 models
    2910 
    2911 > hide #!3 models
    2912 
    2913 > hide #!4 models
    2914 
    2915 > show #!4 models
    2916 
    2917 > color zone #1 near #4 distance 11.3
    2918 
    2919 > close #3
    2920 
    2921 > split #2
    2922 
    2923 Split Structure_20SCP_preholo_2xMap5_docked (#2) into 34 models 
    2924 Chain information for Structure_20SCP_preholo_2xMap5_docked A #2.1 
    2925 --- 
    2926 Chain | Description 
    2927 A | No description available 
    2928  
    2929 Chain information for Structure_20SCP_preholo_2xMap5_docked B #2.2 
    2930 --- 
    2931 Chain | Description 
    2932 B | No description available 
    2933  
    2934 Chain information for Structure_20SCP_preholo_2xMap5_docked C #2.3 
    2935 --- 
    2936 Chain | Description 
    2937 C | No description available 
    2938  
    2939 Chain information for Structure_20SCP_preholo_2xMap5_docked D #2.4 
    2940 --- 
    2941 Chain | Description 
    2942 D | No description available 
    2943  
    2944 Chain information for Structure_20SCP_preholo_2xMap5_docked E #2.5 
    2945 --- 
    2946 Chain | Description 
    2947 E | No description available 
    2948  
    2949 Chain information for Structure_20SCP_preholo_2xMap5_docked F #2.6 
    2950 --- 
    2951 Chain | Description 
    2952 F | No description available 
    2953  
    2954 Chain information for Structure_20SCP_preholo_2xMap5_docked G #2.7 
    2955 --- 
    2956 Chain | Description 
    2957 G | No description available 
    2958  
    2959 Chain information for Structure_20SCP_preholo_2xMap5_docked H #2.8 
    2960 --- 
    2961 Chain | Description 
    2962 H | No description available 
    2963  
    2964 Chain information for Structure_20SCP_preholo_2xMap5_docked I #2.9 
    2965 --- 
    2966 Chain | Description 
    2967 I | No description available 
    2968  
    2969 Chain information for Structure_20SCP_preholo_2xMap5_docked J #2.10 
    2970 --- 
    2971 Chain | Description 
    2972 J | No description available 
    2973  
    2974 Chain information for Structure_20SCP_preholo_2xMap5_docked K #2.11 
    2975 --- 
    2976 Chain | Description 
    2977 K | No description available 
    2978  
    2979 Chain information for Structure_20SCP_preholo_2xMap5_docked L #2.12 
    2980 --- 
    2981 Chain | Description 
    2982 L | No description available 
    2983  
    2984 Chain information for Structure_20SCP_preholo_2xMap5_docked M #2.13 
    2985 --- 
    2986 Chain | Description 
    2987 M | No description available 
    2988  
    2989 Chain information for Structure_20SCP_preholo_2xMap5_docked N #2.14 
    2990 --- 
    2991 Chain | Description 
    2992 N | No description available 
    2993  
    2994 Chain information for Structure_20SCP_preholo_2xMap5_docked O #2.15 
    2995 --- 
    2996 Chain | Description 
    2997 O | No description available 
    2998  
    2999 Chain information for Structure_20SCP_preholo_2xMap5_docked P #2.16 
    3000 --- 
    3001 Chain | Description 
    3002 P | No description available 
    3003  
    3004 Chain information for Structure_20SCP_preholo_2xMap5_docked Q #2.17 
    3005 --- 
    3006 Chain | Description 
    3007 Q | No description available 
    3008  
    3009 Chain information for Structure_20SCP_preholo_2xMap5_docked R #2.18 
    3010 --- 
    3011 Chain | Description 
    3012 R | No description available 
    3013  
    3014 Chain information for Structure_20SCP_preholo_2xMap5_docked S #2.19 
    3015 --- 
    3016 Chain | Description 
    3017 S | No description available 
    3018  
    3019 Chain information for Structure_20SCP_preholo_2xMap5_docked T #2.20 
    3020 --- 
    3021 Chain | Description 
    3022 T | No description available 
    3023  
    3024 Chain information for Structure_20SCP_preholo_2xMap5_docked U #2.21 
    3025 --- 
    3026 Chain | Description 
    3027 U | No description available 
    3028  
    3029 Chain information for Structure_20SCP_preholo_2xMap5_docked V #2.22 
    3030 --- 
    3031 Chain | Description 
    3032 V | No description available 
    3033  
    3034 Chain information for Structure_20SCP_preholo_2xMap5_docked W #2.23 
    3035 --- 
    3036 Chain | Description 
    3037 W | No description available 
    3038  
    3039 Chain information for Structure_20SCP_preholo_2xMap5_docked X #2.24 
    3040 --- 
    3041 Chain | Description 
    3042 X | No description available 
    3043  
    3044 Chain information for Structure_20SCP_preholo_2xMap5_docked Y #2.25 
    3045 --- 
    3046 Chain | Description 
    3047 Y | No description available 
    3048  
    3049 Chain information for Structure_20SCP_preholo_2xMap5_docked Z #2.26 
    3050 --- 
    3051 Chain | Description 
    3052 Z | No description available 
    3053  
    3054 Chain information for Structure_20SCP_preholo_2xMap5_docked a #2.27 
    3055 --- 
    3056 Chain | Description 
    3057 a | No description available 
    3058  
    3059 Chain information for Structure_20SCP_preholo_2xMap5_docked b #2.28 
    3060 --- 
    3061 Chain | Description 
    3062 b | No description available 
    3063  
    3064 Chain information for Structure_20SCP_preholo_2xMap5_docked c #2.29 
    3065 --- 
    3066 Chain | Description 
    3067 c | No description available 
    3068  
    3069 Chain information for Structure_20SCP_preholo_2xMap5_docked d #2.30 
    3070 --- 
    3071 Chain | Description 
    3072 d | No description available 
    3073  
    3074 Chain information for Structure_20SCP_preholo_2xMap5_docked e #2.31 
    3075 --- 
    3076 Chain | Description 
    3077 e | No description available 
    3078  
    3079 Chain information for Structure_20SCP_preholo_2xMap5_docked f #2.32 
    3080 --- 
    3081 Chain | Description 
    3082 f | No description available 
    3083  
    3084 Chain information for Structure_20SCP_preholo_2xMap5_docked g #2.33 
    3085 --- 
    3086 Chain | Description 
    3087 g | No description available 
    3088  
    3089 Chain information for Structure_20SCP_preholo_2xMap5_docked h #2.34 
    3090 --- 
    3091 Chain | Description 
    3092 h | No description available 
    3093  
    3094 
    3095 > select add #2.1
    3096 
    3097 1727 atoms, 1766 bonds, 229 residues, 1 model selected 
    3098 
    3099 > transparency 50
    3100 
    3101 > show #2.1 models
    3102 
    3103 > hide #!2 models
    3104 
    3105 > show #!2 models
    3106 
    3107 > show #!2.2 models
    3108 
    3109 > show #2.3 models
    3110 
    3111 > show #!2.4 models
    3112 
    3113 > show #2.5 models
    3114 
    3115 > show #2.6 models
    3116 
    3117 > show #2.7 models
    3118 
    3119 > show #2.8 models
    3120 
    3121 > show #!2.9 models
    3122 
    3123 > show #!2.10 models
    3124 
    3125 > show #!2.11 models
    3126 
    3127 > show #!2.12 models
    3128 
    3129 > show #2.13 models
    3130 
    3131 > hide #2.13 models
    3132 
    3133 > show #!2.14 models
    3134 
    3135 > show #2.13 models
    3136 
    3137 > show #!2.15 models
    3138 
    3139 > show #!2.16 models
    3140 
    3141 > show #!2.17 models
    3142 
    3143 > show #2.18 models
    3144 
    3145 > show #!2.19 models
    3146 
    3147 > show #2.20 models
    3148 
    3149 > show #!2.21 models
    3150 
    3151 > show #2.22 models
    3152 
    3153 > show #2.23 models
    3154 
    3155 > show #2.24 models
    3156 
    3157 > show #2.25 models
    3158 
    3159 > show #!2.26 models
    3160 
    3161 > show #!2.27 models
    3162 
    3163 > show #!2.28 models
    3164 
    3165 > show #!2.29 models
    3166 
    3167 > show #2.30 models
    3168 
    3169 > show #!2.31 models
    3170 
    3171 > show #!2.32 models
    3172 
    3173 > show #!2.33 models
    3174 
    3175 > show #!2.34 models
    3176 
    3177 > fitmap #2.1 inMap #1
    3178 
    3179 Fit molecule Structure_20SCP_preholo_2xMap5_docked A (#2.1) to map
    3180 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1727
    3181 atoms 
    3182 average map value = 0.3128, steps = 44 
    3183 shifted from previous position = 0.22 
    3184 rotated from previous position = 0.438 degrees 
    3185 atoms outside contour = 378, contour level = 0.12772 
    3186  
    3187 Position of Structure_20SCP_preholo_2xMap5_docked A (#2.1) relative to
    3188 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    3189 Matrix rotation and translation 
    3190 0.99999366 0.00330766 -0.00132116 -0.14380031 
    3191 -0.00331653 0.99997159 -0.00676931 1.36502836 
    3192 0.00129874 0.00677365 0.99997622 -0.92005519 
    3193 Axis 0.88503674 -0.17121145 -0.43289331 
    3194 Axis point 0.00000000 134.15368166 202.03015126 
    3195 Rotation angle (degrees) 0.43837830 
    3196 Shift along axis 0.03730868 
    3197  
    3198 
    3199 > select subtract #2.1
    3200 
    3201 Nothing selected 
    3202 
    3203 > select add #2.1
    3204 
    3205 1727 atoms, 1766 bonds, 229 residues, 1 model selected 
    3206 
    3207 > select add #2
    3208 
    3209 54390 atoms, 55374 bonds, 40 pseudobonds, 7274 residues, 55 models selected 
    3210 
    3211 > select subtract #2
    3212 
    3213 Nothing selected 
    3214 
    3215 > select add #2.1
    3216 
    3217 1727 atoms, 1766 bonds, 229 residues, 1 model selected 
    3218 
    3219 > select subtract #2.1
    3220 
    3221 Nothing selected 
    3222 
    3223 > select add #2.2
    3224 
    3225 1762 atoms, 1789 bonds, 1 pseudobond, 242 residues, 2 models selected 
    3226 
    3227 > fitmap #2.2 inMap #1
    3228 
    3229 Fit molecule Structure_20SCP_preholo_2xMap5_docked B (#2.2) to map
    3230 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1762
    3231 atoms 
    3232 average map value = 0.3063, steps = 48 
    3233 shifted from previous position = 0.208 
    3234 rotated from previous position = 0.132 degrees 
    3235 atoms outside contour = 380, contour level = 0.12772 
    3236  
    3237 Position of Structure_20SCP_preholo_2xMap5_docked B (#2.2) relative to
    3238 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    3239 Matrix rotation and translation 
    3240 0.99999736 0.00168742 -0.00156034 0.06358106 
    3241 -0.00168724 0.99999857 0.00011938 0.02704562 
    3242 0.00156054 -0.00011675 0.99999878 -0.28530675 
    3243 Axis -0.05130437 -0.67806866 -0.73320581 
    3244 Axis point 91.45420342 -43.23971739 0.00000000 
    3245 Rotation angle (degrees) 0.13185507 
    3246 Shift along axis 0.18758779 
    3247  
    3248 
    3249 > select subtract #2.2
    3250 
    3251 Nothing selected 
    3252 
    3253 > select add #2.3
    3254 
    3255 1732 atoms, 1755 bonds, 233 residues, 1 model selected 
    3256 
    3257 > select add #2
    3258 
    3259 54390 atoms, 55374 bonds, 40 pseudobonds, 7274 residues, 55 models selected 
    3260 
    3261 > select subtract #2
    3262 
    3263 Nothing selected 
    3264 
    3265 > hide #!4 models
    3266 
    3267 > hide #!2 models
    3268 
    3269 > show #!2 models
    3270 
    3271 > hide #!2 models
    3272 
    3273 > hide #!1 models
    3274 
    3275 > show #!1 models
    3276 
    3277 > show #!2 models
    3278 
    3279 > hide #!2 models
    3280 
    3281 > show #!2 models
    3282 
    3283 > hide #!2 models
    3284 
    3285 > show #!2 models
    3286 
    3287 > hide #!2 models
    3288 
    3289 > show #!2 models
    3290 
    3291 > hide #!2 models
    3292 
    3293 > show #!2 models
    3294 
    3295 > volume #1 level 0.1277
    3296 
    3297 > volume #1 level 0.1723
    3298 
    3299 > hide #!2 models
    3300 
    3301 > close #2
    3302 
    3303 > rename #4 id #2
    3304 
    3305 > show #!2 models
    3306 
    3307 > color zone #1 near #2 distance 11.3
    3308 
    3309 > save
    3310 > /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_mature_beta-
    3311 > subunits_docked.pdb
    3312 
    3313 > save
    3314 > /Users/fadlof/Downloads/20SCP_preholo/Structure_20SCP_preholo_model_building.cxs
    3315 > includeMaps true
    3316 
    3317 ——— End of log from Tue Sep 19 12:38:57 2023 ———
    3318 
    3319 opened ChimeraX session 
    3320 
    3321 > hide #!2 models
    3322 
    3323 > open "/Users/fadlof/Downloads/20SCP_preholo/Coot
    3324 > /Structure_20SCP_preholo_mature_beta-
    3325 > subunits_docked_real_space_refined_001-coot-2.pdb"
    3326 
    3327 Summary of feedback from opening /Users/fadlof/Downloads/20SCP_preholo/Coot
    3328 /Structure_20SCP_preholo_mature_beta-
    3329 subunits_docked_real_space_refined_001-coot-2.pdb 
    3330 --- 
    3331 warning | End residue of secondary structure not found: HELIX 99 99 ASP P 255
    3332 HIS P 258 1 4 
    3333  
    3334 Chain information for Structure_20SCP_preholo_mature_beta-
    3335 subunits_docked_real_space_refined_001-coot-2.pdb #3 
    3336 --- 
    3337 Chain | Description 
    3338 A | No description available 
    3339 B | No description available 
    3340 C | No description available 
    3341 D | No description available 
    3342 E | No description available 
    3343 F | No description available 
    3344 G | No description available 
    3345 H | No description available 
    3346 I | No description available 
    3347 J a | No description available 
    3348 K | No description available 
    3349 L c | No description available 
    3350 M | No description available 
    3351 N | No description available 
    3352 O | No description available 
    3353 P | No description available 
    3354 Q | No description available 
    3355 R | No description available 
    3356 S | No description available 
    3357 T | No description available 
    3358 U | No description available 
    3359 V | No description available 
    3360 W | No description available 
    3361 X | No description available 
    3362 Y | No description available 
    3363 Z | No description available 
    3364 b | No description available 
    3365 d | No description available 
    3366 e | No description available 
    3367 f | No description available 
    3368 g | No description available 
    3369 h | No description available 
    3370  
    3371 
    3372 > style #!3 stick
    3373 
    3374 Changed 57246 atom styles 
    3375 
    3376 > show #!3 cartoons
    3377 
    3378 > hide #!3 cartoons
    3379 
    3380 > show #!3 cartoons
    3381 
    3382 > hide #!3 atoms
    3383 
    3384 > show #!2 models
    3385 
    3386 > hide #!3 models
    3387 
    3388 > show #!3 models
    3389 
    3390 > hide #!2 models
    3391 
    3392 > show #!2 models
    3393 
    3394 > hide #!3 models
    3395 
    3396 > show #!3 models
    3397 
    3398 > hide #!2 models
    3399 
    3400 > color zone #1 near #3 distance 11.3
    3401 
    3402 > volume #1 level 0.1557
    3403 
    3404 > volume #1 level 0.1391
    3405 
    3406 > volume #1 level 0.04631
    3407 
    3408 > view
    3409 
    3410 [Repeated 1 time(s)]
    3411 
    3412 > ui tool show "Side View"
    3413 
    3414 > close #3
    3415 
    3416 > open "/Users/fadlof/Downloads/20SCP_preholo/Coot
    3417 > /Structure_20SCP_preholo_mature_beta-
    3418 > subunits_docked_real_space_refined_001-coot-1.pdb"
    3419 
    3420 Summary of feedback from opening /Users/fadlof/Downloads/20SCP_preholo/Coot
    3421 /Structure_20SCP_preholo_mature_beta-
    3422 subunits_docked_real_space_refined_001-coot-1.pdb 
    3423 --- 
    3424 warning | End residue of secondary structure not found: HELIX 99 99 ASP P 255
    3425 HIS P 258 1 4 
    3426  
    3427 Chain information for Structure_20SCP_preholo_mature_beta-
    3428 subunits_docked_real_space_refined_001-coot-1.pdb #3 
    3429 --- 
    3430 Chain | Description 
    3431 A | No description available 
    3432 B | No description available 
    3433 C | No description available 
    3434 D | No description available 
    3435 E | No description available 
    3436 F | No description available 
    3437 G | No description available 
    3438 H | No description available 
    3439 I | No description available 
    3440 J a | No description available 
    3441 K | No description available 
    3442 L c | No description available 
    3443 M | No description available 
    3444 N | No description available 
    3445 O | No description available 
    3446 P | No description available 
    3447 Q | No description available 
    3448 R | No description available 
    3449 S | No description available 
    3450 T | No description available 
    3451 U | No description available 
    3452 V | No description available 
    3453 W | No description available 
    3454 X | No description available 
    3455 Y | No description available 
    3456 Z | No description available 
    3457 b | No description available 
    3458 d | No description available 
    3459 e | No description available 
    3460 f | No description available 
    3461 g | No description available 
    3462 h | No description available 
    3463  
    3464 
    3465 > style #!3 stick
    3466 
    3467 Changed 57246 atom styles 
    3468 
    3469 > hide #!3 cartoons
    3470 
    3471 [Repeated 1 time(s)]
    3472 
    3473 > show #!3 cartoons
    3474 
    3475 > hide #!3 atoms
    3476 
    3477 [Repeated 1 time(s)]
    3478 
    3479 > hide #!1 models
    3480 
    3481 > show #!1 models
    3482 
    3483 > color zone #1 near #3 distance 11.3
    3484 
    3485 > volume #1 level 0.05
    3486 
    3487 > volume #1 level 0.08
    3488 
    3489 > volume #1 level 0.1
    3490 
    3491 > transparency 50
    3492 
    3493 > slpit #3
    3494 
    3495 Unknown command: slpit #3 
    3496 
    3497 > split #3
    3498 
    3499 Split Structure_20SCP_preholo_mature_beta-
    3500 subunits_docked_real_space_refined_001-coot-1.pdb (#3) into 34 models 
    3501 Chain information for Structure_20SCP_preholo_mature_beta-
    3502 subunits_docked_real_space_refined_001-coot-1.pdb A #3.1 
    3503 --- 
    3504 Chain | Description 
    3505 A | No description available 
    3506  
    3507 Chain information for Structure_20SCP_preholo_mature_beta-
    3508 subunits_docked_real_space_refined_001-coot-1.pdb B #3.2 
    3509 --- 
    3510 Chain | Description 
    3511 B | No description available 
    3512  
    3513 Chain information for Structure_20SCP_preholo_mature_beta-
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    3519 Chain information for Structure_20SCP_preholo_mature_beta-
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    3525 Chain information for Structure_20SCP_preholo_mature_beta-
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    3531 Chain information for Structure_20SCP_preholo_mature_beta-
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    3537 Chain information for Structure_20SCP_preholo_mature_beta-
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    3543 Chain information for Structure_20SCP_preholo_mature_beta-
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    3549 Chain information for Structure_20SCP_preholo_mature_beta-
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    3555 Chain information for Structure_20SCP_preholo_mature_beta-
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    3561 Chain information for Structure_20SCP_preholo_mature_beta-
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    3567 Chain information for Structure_20SCP_preholo_mature_beta-
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    3573 Chain information for Structure_20SCP_preholo_mature_beta-
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    3578  
    3579 Chain information for Structure_20SCP_preholo_mature_beta-
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    3585 Chain information for Structure_20SCP_preholo_mature_beta-
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    3590  
    3591 Chain information for Structure_20SCP_preholo_mature_beta-
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    3596  
    3597 Chain information for Structure_20SCP_preholo_mature_beta-
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    3600 Chain | Description 
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    3603 Chain information for Structure_20SCP_preholo_mature_beta-
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    3608  
    3609 Chain information for Structure_20SCP_preholo_mature_beta-
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    3614  
    3615 Chain information for Structure_20SCP_preholo_mature_beta-
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    3620  
    3621 Chain information for Structure_20SCP_preholo_mature_beta-
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    3626  
    3627 Chain information for Structure_20SCP_preholo_mature_beta-
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    3630 Chain | Description 
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    3632  
    3633 Chain information for Structure_20SCP_preholo_mature_beta-
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    3636 Chain | Description 
    3637 W | No description available 
    3638  
    3639 Chain information for Structure_20SCP_preholo_mature_beta-
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    3642 Chain | Description 
    3643 X | No description available 
    3644  
    3645 Chain information for Structure_20SCP_preholo_mature_beta-
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    3647 --- 
    3648 Chain | Description 
    3649 Y | No description available 
    3650  
    3651 Chain information for Structure_20SCP_preholo_mature_beta-
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    3653 --- 
    3654 Chain | Description 
    3655 Z | No description available 
    3656  
    3657 Chain information for Structure_20SCP_preholo_mature_beta-
    3658 subunits_docked_real_space_refined_001-coot-1.pdb a #3.27 
    3659 --- 
    3660 Chain | Description 
    3661 a | No description available 
    3662  
    3663 Chain information for Structure_20SCP_preholo_mature_beta-
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    3666 Chain | Description 
    3667 b | No description available 
    3668  
    3669 Chain information for Structure_20SCP_preholo_mature_beta-
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    3671 --- 
    3672 Chain | Description 
    3673 c | No description available 
    3674  
    3675 Chain information for Structure_20SCP_preholo_mature_beta-
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    3677 --- 
    3678 Chain | Description 
    3679 d | No description available 
    3680  
    3681 Chain information for Structure_20SCP_preholo_mature_beta-
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    3683 --- 
    3684 Chain | Description 
    3685 e | No description available 
    3686  
    3687 Chain information for Structure_20SCP_preholo_mature_beta-
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    3689 --- 
    3690 Chain | Description 
    3691 f | No description available 
    3692  
    3693 Chain information for Structure_20SCP_preholo_mature_beta-
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    3695 --- 
    3696 Chain | Description 
    3697 g | No description available 
    3698  
    3699 Chain information for Structure_20SCP_preholo_mature_beta-
    3700 subunits_docked_real_space_refined_001-coot-1.pdb h #3.34 
    3701 --- 
    3702 Chain | Description 
    3703 h | No description available 
    3704  
    3705 
    3706 > color #3.1 #a3d1f6ff
    3707 
    3708 > color #3.2 #90c8f5ff
    3709 
    3710 > color #3.3 #59acefff
    3711 
    3712 > color #3.4 #2590eaff
    3713 
    3714 > color #3.5 #176fbbff
    3715 
    3716 > color #3.6 #326cb1ff
    3717 
    3718 > color #3.7 #c7e4faff
    3719 
    3720 > select add #3.8
    3721 
    3722 889 atoms, 904 bonds, 111 residues, 1 model selected 
    3723 
    3724 > color #3.8 #fe9000ff
    3725 
    3726 > select add #3.9
    3727 
    3728 2929 atoms, 2987 bonds, 3 pseudobonds, 379 residues, 3 models selected 
    3729 
    3730 > select subtract #3.9
    3731 
    3732 889 atoms, 904 bonds, 111 residues, 1 model selected 
    3733 
    3734 > select add #3.9
    3735 
    3736 2929 atoms, 2987 bonds, 3 pseudobonds, 379 residues, 3 models selected 
    3737 
    3738 > color #3.8 #fff7d6ff
    3739 
    3740 > color #3.8 #fe9000ff
    3741 
    3742 > color #3.9 #fff7d6ff
    3743 
    3744 > color #3.10 #ffec99ff
    3745 
    3746 > color #3.10 #f4d5ffff
    3747 
    3748 > color #3.11 #efc1ffff
    3749 
    3750 > color #3.12 #e497ffff
    3751 
    3752 > color #3.13 #d356ffff
    3753 
    3754 > color #3.14 #c300ffff
    3755 
    3756 > color #3.15 #a500e0ff
    3757 
    3758 > color #3.16 #9600ccff
    3759 
    3760 > select add #3.17
    3761 
    3762 4384 atoms, 4467 bonds, 3 pseudobonds, 574 residues, 4 models selected 
    3763 
    3764 > color #3.17 silver
    3765 
    3766 > color #3.18 silver
    3767 
    3768 > color #3.19 silver
    3769 
    3770 > color #3.20 silver
    3771 
    3772 > color #3.21 silver
    3773 
    3774 > color #3.22 silver
    3775 
    3776 > color #3.23 silver
    3777 
    3778 > color #3.24 #fe9000ff
    3779 
    3780 > color #3.25 silver
    3781 
    3782 > color #3.26 silver
    3783 
    3784 > color #3.27 #ff7e79ff
    3785 
    3786 > color #3.28 darkgrey
    3787 
    3788 > color #3.29 silver
    3789 
    3790 > color #3.28 silver
    3791 
    3792 > color #3.30 silver
    3793 
    3794 > color #3.31 silver
    3795 
    3796 > color #3.32 darkgrey
    3797 
    3798 > color #3.32 silver
    3799 
    3800 > color #3.33 silver
    3801 
    3802 > color #3.34 #d6d6d6ff
    3803 
    3804 > color #3.34 silver
    3805 
    3806 > select add #3
    3807 
    3808 57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 44 models selected 
    3809 
    3810 > select subtract #3
    3811 
    3812 Nothing selected 
    3813 
    3814 > combine #3
    3815 
    3816 Color zone shortcut requires 1 displayed atomic model and 1 map, got 35 atomic
    3817 models, 1 maps. 
    3818 
    3819 > hide #!3 models
    3820 
    3821 > color zone #1 near #4 distance 11.3
    3822 
    3823 > color #3.24 silver
    3824 
    3825 > color #3.24 darkgrey
    3826 
    3827 > color #3.27 silver
    3828 
    3829 > combine #3
    3830 
    3831 > close #4
    3832 
    3833 > rename #5 id #4
    3834 
    3835 > color zone #1 near #4 distance 11.3
    3836 
    3837 > select add #3.1
    3838 
    3839 1720 atoms, 1759 bonds, 229 residues, 1 model selected 
    3840 
    3841 > select subtract #3.1
    3842 
    3843 Nothing selected 
    3844 
    3845 > select add #3.1
    3846 
    3847 1720 atoms, 1759 bonds, 229 residues, 1 model selected 
    3848 
    3849 > select add #3.2
    3850 
    3851 3522 atoms, 3589 bonds, 477 residues, 2 models selected 
    3852 
    3853 > select add #3.3
    3854 
    3855 5290 atoms, 5380 bonds, 714 residues, 3 models selected 
    3856 
    3857 > select add #3.4
    3858 
    3859 7063 atoms, 7181 bonds, 1 pseudobond, 952 residues, 5 models selected 
    3860 
    3861 > select add #3.5
    3862 
    3863 8972 atoms, 9127 bonds, 1 pseudobond, 1199 residues, 6 models selected 
    3864 
    3865 > select add #3.6
    3866 
    3867 10819 atoms, 11009 bonds, 1 pseudobond, 1440 residues, 7 models selected 
    3868 
    3869 > select add #3.7
    3870 
    3871 12684 atoms, 12907 bonds, 1 pseudobond, 1686 residues, 8 models selected 
    3872 
    3873 > hide #!1 models
    3874 
    3875 > select add #3
    3876 
    3877 57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 44 models selected 
    3878 
    3879 > select subtract #3
    3880 
    3881 Nothing selected 
    3882 
    3883 > select add #3.8
    3884 
    3885 889 atoms, 904 bonds, 111 residues, 1 model selected 
    3886 
    3887 > color #3.8 #8efa00ff
    3888 
    3889 > hide #!4 models
    3890 
    3891 > show #!3 models
    3892 
    3893 > close #4
    3894 
    3895 > color #3.10 #ffec99ff
    3896 
    3897 > color #3.11 #f4d5ffff
    3898 
    3899 > color #3.12 #efc1ffff
    3900 
    3901 > color #3.13 #e497ffff
    3902 
    3903 > color #3.14 #d356ffff
    3904 
    3905 > color #3.15 #c300ffff
    3906 
    3907 > color #3.16 #a500e0ff
    3908 
    3909 > color #3.17 #9600ccff
    3910 
    3911 > select add #3.18
    3912 
    3913 2616 atoms, 2670 bonds, 340 residues, 2 models selected 
    3914 
    3915 > select subtract #3.18
    3916 
    3917 889 atoms, 904 bonds, 111 residues, 1 model selected 
    3918 
    3919 > select add #3.18
    3920 
    3921 2616 atoms, 2670 bonds, 340 residues, 2 models selected 
    3922 
    3923 > select subtract #3.18
    3924 
    3925 889 atoms, 904 bonds, 111 residues, 1 model selected 
    3926 
    3927 > color #3.25 #fe9000ff
    3928 
    3929 > select add #3.28
    3930 
    3931 2548 atoms, 2590 bonds, 331 residues, 2 models selected 
    3932 
    3933 > color #3.25 #f4d5ffff
    3934 
    3935 > color #3.25 #fe9000ff
    3936 
    3937 > color #3.28 #f4d5ffff
    3938 
    3939 > color #3.29 #efc1ffff
    3940 
    3941 > color #3.30 #e497ffff
    3942 
    3943 > color #3.31 #d356ffff
    3944 
    3945 > color #3.32 #c300ffff
    3946 
    3947 > color #3.33 #a500e0ff
    3948 
    3949 > color #3.34 #9600ccff
    3950 
    3951 > select subtract #3.28
    3952 
    3953 889 atoms, 904 bonds, 111 residues, 1 model selected 
    3954 
    3955 Color zone shortcut requires 1 displayed atomic model and 1 map, got 34 atomic
    3956 models, 0 maps. 
    3957 
    3958 > combine #3
    3959 
    3960 > select add #3
    3961 
    3962 57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 44 models selected 
    3963 
    3964 > select subtract #3
    3965 
    3966 Nothing selected 
    3967 
    3968 > hide #!3 models
    3969 
    3970 > show #!1 models
    3971 
    3972 > color zone #1 near #4 distance 11.3
    3973 
    3974 > transparency 50
    3975 
    3976 > color zone #1 near #4 distance 11.3
    3977 
    3978 > hide #3.8 models
    3979 
    3980 > show #3.8 models
    3981 
    3982 > hide #!4 models
    3983 
    3984 > hide #3.8 models
    3985 
    3986 > show #3.8 models
    3987 
    3988 > volume #1 level 0.12
    3989 
    3990 > transparency 50
    3991 
    3992 > transparency 0
    3993 
    3994 > hide #!3.11 models
    3995 
    3996 > hide #3.12 models
    3997 
    3998 > hide #3.13 models
    3999 
    4000 > hide #3.14 models
    4001 
    4002 > hide #3.15 models
    4003 
    4004 > hide #3.16 models
    4005 
    4006 > hide #3.17 models
    4007 
    4008 > show #3.17 models
    4009 
    4010 > show #3.16 models
    4011 
    4012 > show #3.15 models
    4013 
    4014 > show #3.14 models
    4015 
    4016 > show #3.13 models
    4017 
    4018 > show #3.12 models
    4019 
    4020 > show #!3.11 models
    4021 
    4022 > select add #3.11
    4023 
    4024 1875 atoms, 1906 bonds, 1 pseudobond, 251 residues, 2 models selected 
    4025 
    4026 > select add #3.12
    4027 
    4028 3466 atoms, 3526 bonds, 1 pseudobond, 455 residues, 3 models selected 
    4029 
    4030 > select add #3.13
    4031 
    4032 5034 atoms, 5127 bonds, 1 pseudobond, 652 residues, 4 models selected 
    4033 
    4034 > select add #3.14
    4035 
    4036 6583 atoms, 6707 bonds, 1 pseudobond, 852 residues, 5 models selected 
    4037 
    4038 > select add #3.15
    4039 
    4040 8226 atoms, 8380 bonds, 1 pseudobond, 1064 residues, 6 models selected 
    4041 
    4042 > select add #3.16
    4043 
    4044 9849 atoms, 10034 bonds, 1 pseudobond, 1272 residues, 7 models selected 
    4045 
    4046 > select add #3.17
    4047 
    4048 11304 atoms, 11514 bonds, 1 pseudobond, 1467 residues, 8 models selected 
    4049 
    4050 > select add #3.18
    4051 
    4052 13031 atoms, 13280 bonds, 1 pseudobond, 1696 residues, 9 models selected 
    4053 
    4054 > select add #3.19
    4055 
    4056 14793 atoms, 15069 bonds, 2 pseudobonds, 1938 residues, 11 models selected 
    4057 
    4058 > select add #3.20
    4059 
    4060 16525 atoms, 16824 bonds, 2 pseudobonds, 2171 residues, 12 models selected 
    4061 
    4062 > select add #3.21
    4063 
    4064 18272 atoms, 18599 bonds, 3 pseudobonds, 2406 residues, 14 models selected 
    4065 
    4066 > select add #3.22
    4067 
    4068 20104 atoms, 20466 bonds, 3 pseudobonds, 2644 residues, 15 models selected 
    4069 
    4070 > select add #3.23
    4071 
    4072 21938 atoms, 22335 bonds, 3 pseudobonds, 2884 residues, 16 models selected 
    4073 
    4074 > select add #3.24
    4075 
    4076 23776 atoms, 24206 bonds, 3 pseudobonds, 3128 residues, 17 models selected 
    4077 
    4078 > select add #3.25
    4079 
    4080 24677 atoms, 25122 bonds, 3 pseudobonds, 3241 residues, 18 models selected 
    4081 
    4082 > select add #3.26
    4083 
    4084 26671 atoms, 27158 bonds, 6 pseudobonds, 3505 residues, 20 models selected 
    4085 
    4086 > select add #3.27
    4087 
    4088 28554 atoms, 29081 bonds, 8 pseudobonds, 3753 residues, 22 models selected 
    4089 
    4090 > close #2
    4091 
    4092 > close #4
    4093 
    4094 > rename #3 id #2
    4095 
    4096 > combine #2
    4097 
    4098 > select add #2
    4099 
    4100 57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 44 models selected 
    4101 
    4102 > select subtract #2
    4103 
    4104 Nothing selected 
    4105 
    4106 > select add #3
    4107 
    4108 57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 2 models selected 
    4109 
    4110 > select subtract #3
    4111 
    4112 Nothing selected 
    4113 
    4114 > select add #3
    4115 
    4116 57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 2 models selected 
    4117 
    4118 > select subtract #3
    4119 
    4120 Nothing selected 
    4121 
    4122 > select add #3
    4123 
    4124 57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 2 models selected 
    4125 
    4126 > select subtract #3
    4127 
    4128 Nothing selected 
    4129 
    4130 > select add #2.1
    4131 
    4132 1720 atoms, 1759 bonds, 229 residues, 1 model selected 
    4133 
    4134 > select subtract #2.1
    4135 
    4136 Nothing selected 
    4137 
    4138 > select add #2.11
    4139 
    4140 1875 atoms, 1906 bonds, 1 pseudobond, 251 residues, 2 models selected 
    4141 
    4142 > select add #2.12
    4143 
    4144 3466 atoms, 3526 bonds, 1 pseudobond, 455 residues, 3 models selected 
    4145 
    4146 > select add #2.13
    4147 
    4148 5034 atoms, 5127 bonds, 1 pseudobond, 652 residues, 4 models selected 
    4149 
    4150 > select add #2.14
    4151 
    4152 6583 atoms, 6707 bonds, 1 pseudobond, 852 residues, 5 models selected 
    4153 
    4154 > select add #2.15
    4155 
    4156 8226 atoms, 8380 bonds, 1 pseudobond, 1064 residues, 6 models selected 
    4157 
    4158 > select add #2.16
    4159 
    4160 9849 atoms, 10034 bonds, 1 pseudobond, 1272 residues, 7 models selected 
    4161 
    4162 > select add #2.17
    4163 
    4164 11304 atoms, 11514 bonds, 1 pseudobond, 1467 residues, 8 models selected 
    4165 
    4166 > select add #2.25
    4167 
    4168 12205 atoms, 12430 bonds, 1 pseudobond, 1580 residues, 9 models selected 
    4169 
    4170 > select add #2.26
    4171 
    4172 14199 atoms, 14466 bonds, 4 pseudobonds, 1844 residues, 11 models selected 
    4173 
    4174 > select add #2.27
    4175 
    4176 16082 atoms, 16389 bonds, 6 pseudobonds, 2092 residues, 13 models selected 
    4177 
    4178 > select add #2.18
    4179 
    4180 17809 atoms, 18155 bonds, 6 pseudobonds, 2321 residues, 14 models selected 
    4181 
    4182 > select add #2.19
    4183 
    4184 19571 atoms, 19944 bonds, 7 pseudobonds, 2563 residues, 16 models selected 
    4185 
    4186 > select add #2.20
    4187 
    4188 21303 atoms, 21699 bonds, 7 pseudobonds, 2796 residues, 17 models selected 
    4189 
    4190 > select add #2.21
    4191 
    4192 23050 atoms, 23474 bonds, 8 pseudobonds, 3031 residues, 19 models selected 
    4193 
    4194 > select add #2.22
    4195 
    4196 24882 atoms, 25341 bonds, 8 pseudobonds, 3269 residues, 20 models selected 
    4197 
    4198 > select add #2.23
    4199 
    4200 26716 atoms, 27210 bonds, 8 pseudobonds, 3509 residues, 21 models selected 
    4201 
    4202 > select add #2.24
    4203 
    4204 28554 atoms, 29081 bonds, 8 pseudobonds, 3753 residues, 22 models selected 
    4205 
    4206 > hide #!3 models
    4207 
    4208 > combine sel
    4209 
    4210 > select add #4
    4211 
    4212 57108 atoms, 58162 bonds, 16 pseudobonds, 7506 residues, 24 models selected 
    4213 
    4214 > select subtract #4
    4215 
    4216 28554 atoms, 29081 bonds, 8 pseudobonds, 3753 residues, 22 models selected 
    4217 
    4218 > hide #!2 models
    4219 
    4220 > hide #!1 models
    4221 
    4222 > show #!1 models
    4223 
    4224 > show #!2 models
    4225 
    4226 > hide #!2 models
    4227 
    4228 > show #!2 models
    4229 
    4230 > hide #!2 models
    4231 
    4232 > hide #!1 models
    4233 
    4234 > show #!1 models
    4235 
    4236 > hide #!1 models
    4237 
    4238 > show #!1 models
    4239 
    4240 > hide #!1 models
    4241 
    4242 > show #!1 models
    4243 
    4244 > hide #!1 models
    4245 
    4246 > show #!1 models
    4247 
    4248 > show #!2 models
    4249 
    4250 > hide #!4 models
    4251 
    4252 > show #!4 models
    4253 
    4254 > hide #!4 models
    4255 
    4256 > show #!4 models
    4257 
    4258 > hide #!1 models
    4259 
    4260 > hide #!2 models
    4261 
    4262 > select add #4
    4263 
    4264 57108 atoms, 58162 bonds, 16 pseudobonds, 7506 residues, 24 models selected 
    4265 
    4266 > show #!1 models
    4267 
    4268 > ui mousemode right select
    4269 
    4270 Drag select of 1 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc ,
    4271 58 residues 
    4272 Drag select of 1 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc ,
    4273 27 residues 
    4274 
    4275 > ui mousemode right "translate selected models"
    4276 
    4277 > view matrix models
    4278 > #1,1,0,0,-10.612,0,1,0,-6.1576,0,0,1,6.0525,#4,1,0,0,-10.612,0,1,0,-6.1576,0,0,1,6.0525
    4279 
    4280 > show #!2 models
    4281 
    4282 > hide #!2 models
    4283 
    4284 > undo
    4285 
    4286 [Repeated 2 time(s)]
    4287 
    4288 > show #!2 models
    4289 
    4290 > hide #!2 models
    4291 
    4292 > show #!2 models
    4293 
    4294 > hide #!2 models
    4295 
    4296 > show #!2 models
    4297 
    4298 > hide #!2 models
    4299 
    4300 > hide #!1 models
    4301 
    4302 > show #!1 models
    4303 
    4304 > ui mousemode right "rotate selected models"
    4305 
    4306 > view matrix models
    4307 > #2.11,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.12,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.13,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.14,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.15,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.16,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.17,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.18,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.19,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.20,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.21,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.22,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.23,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.24,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.25,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.26,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#2.27,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224,#4,0.99998,-0.00083329,-0.0058114,1.1469,0.00089495,0.99994,0.010616,-1.9718,0.0058022,-0.010621,0.99993,0.84224
    4308 
    4309 > ui mousemode right select
    4310 
    4311 > ui mousemode right "translate selected models"
    4312 
    4313 > view matrix models
    4314 > #2.11,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.12,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.13,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.14,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.15,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.16,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.17,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.18,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.19,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.20,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.21,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.22,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.23,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.24,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.25,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.26,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#2.27,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43,#4,0.99998,-0.00083329,-0.0058114,-113.8,0.00089495,0.99994,0.010616,30.465,0.0058022,-0.010621,0.99993,71.43
    4315 
    4316 > ui mousemode right "rotate selected models"
    4317 
    4318 > view matrix models
    4319 > #2.11,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.12,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.13,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.14,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.15,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.16,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.17,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.18,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.19,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.20,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.21,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.22,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.23,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.24,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.25,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.26,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#2.27,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081,#4,0.93879,0.2446,-0.24258,-106.83,-0.27058,0.95938,-0.079805,106.19,0.21321,0.14056,0.96684,8.8081
    4320 
    4321 > view matrix models
    4322 > #2.11,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.12,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.13,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.14,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.15,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.16,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.17,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.18,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.19,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.20,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.21,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.22,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.23,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.24,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.25,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.26,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#2.27,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43,#4,-0.67053,-0.48694,-0.55971,395.37,-0.3669,-0.43807,0.82066,229.34,-0.6448,0.75564,0.11508,207.43
    4323 
    4324 > view matrix models
    4325 > #2.11,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.12,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.13,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.14,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.15,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.16,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.17,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.18,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.19,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.20,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.21,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.22,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.23,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.24,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.25,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.26,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#2.27,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53,#4,-0.66239,-0.59331,-0.45741,395.98,-0.13832,-0.5032,0.85303,191.35,-0.73628,0.6283,0.25125,225.53
    4326 
    4327 > view matrix models
    4328 > #2.11,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.12,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.13,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.14,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.15,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.16,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.17,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.18,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.19,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.20,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.21,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.22,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.23,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.24,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.25,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.26,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#2.27,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926,#4,-0.9773,-0.072135,-0.1992,317.16,0.036702,-0.98368,0.17615,361.21,-0.20865,0.16484,0.964,86.926
    4329 
    4330 > ui mousemode right "translate selected models"
    4331 
    4332 > view matrix models
    4333 > #2.11,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.12,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.13,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.14,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.15,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.16,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.17,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.18,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.19,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.20,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.21,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.22,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.23,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.24,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.25,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.26,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#2.27,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767,#4,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,287.24,-0.20865,0.16484,0.964,2.767
    4334 
    4335 > view matrix models
    4336 > #2.11,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.12,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.13,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.14,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.15,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.16,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.17,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.18,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.19,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.20,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.21,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.22,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.23,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.24,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.25,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.26,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#2.27,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397,#4,-0.9773,-0.072135,-0.1992,355.61,0.036702,-0.98368,0.17615,289.61,-0.20865,0.16484,0.964,8.7397
    4337 
    4338 > view matrix models
    4339 > #2.11,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.12,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.13,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.14,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.15,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.16,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.17,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.18,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.19,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.20,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.21,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.22,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.23,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.24,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.25,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.26,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#2.27,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012,#4,-0.9773,-0.072135,-0.1992,355.04,0.036702,-0.98368,0.17615,289.03,-0.20865,0.16484,0.964,7.9012
    4340 
    4341 > ui mousemode right "rotate selected models"
    4342 
    4343 > view matrix models
    4344 > #2.11,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.12,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.13,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.14,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.15,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.16,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.17,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.18,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.19,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.20,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.21,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.22,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.23,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.24,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.25,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.26,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#2.27,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927,#4,-0.9896,-0.0089052,-0.14358,336.29,-0.00088445,-0.99769,0.067977,317.35,-0.14385,0.067397,0.9873,9.2927
    4345 
    4346 > view matrix models
    4347 > #2.11,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.12,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.13,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.14,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.15,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.16,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.17,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.18,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.19,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.20,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.21,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.22,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.23,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.24,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.25,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.26,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#2.27,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978,#4,-0.96715,-0.076865,-0.2423,361.27,0.0087928,-0.96273,0.27031,274.56,-0.25405,0.2593,0.93178,4.7978
    4348 
    4349 > select add #2
    4350 
    4351 85800 atoms, 87383 bonds, 23 pseudobonds, 11271 residues, 46 models selected 
    4352 
    4353 > select subtract #2
    4354 
    4355 28554 atoms, 29081 bonds, 8 pseudobonds, 3753 residues, 2 models selected 
    4356 
    4357 > select subtract #4
    4358 
    4359 Nothing selected 
    4360 
    4361 > ui tool show "Fit in Map"
    4362 
    4363 > fitmap #4 inMap #1
    4364 
    4365 Fit molecule combination (#4) to map
    4366 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28554
    4367 atoms 
    4368 average map value = 0.2992, steps = 112 
    4369 shifted from previous position = 15.3 
    4370 rotated from previous position = 21.4 degrees 
    4371 atoms outside contour = 6626, contour level = 0.12 
    4372  
    4373 Position of combination (#4) relative to
    4374 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    4375 Matrix rotation and translation 
    4376 -1.00000000 -0.00002298 -0.00000592 316.77674915 
    4377 0.00002297 -0.99999999 0.00007630 316.74687067 
    4378 -0.00000592 0.00007630 1.00000000 -0.01966736 
    4379 Axis -0.00004486 0.00013737 0.99999999 
    4380 Axis point 158.38655460 158.37525639 0.00000000 
    4381 Rotation angle (degrees) 179.99868347 
    4382 Shift along axis 0.00963571 
    4383  
    4384 
    4385 > fitmap #4 inMap #1
    4386 
    4387 Fit molecule combination (#4) to map
    4388 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28554
    4389 atoms 
    4390 average map value = 0.2994, steps = 28 
    4391 shifted from previous position = 0.0333 
    4392 rotated from previous position = 0.0185 degrees 
    4393 atoms outside contour = 6627, contour level = 0.12 
    4394  
    4395 Position of combination (#4) relative to
    4396 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    4397 Matrix rotation and translation 
    4398 -0.99999998 -0.00002596 0.00020068 316.71325904 
    4399 0.00002592 -0.99999998 -0.00017126 316.77191032 
    4400 0.00020068 -0.00017126 0.99999996 -0.01526541 
    4401 Axis 0.00006324 0.00000227 1.00000000 
    4402 Axis point 158.35457583 158.38800897 0.00000000 
    4403 Rotation angle (degrees) 179.99851382 
    4404 Shift along axis 0.00548476 
    4405  
    4406 
    4407 > hide #!1 models
    4408 
    4409 > show #!3 models
    4410 
    4411 > hide #!3 models
    4412 
    4413 > show #!3 models
    4414 
    4415 > hide #!3 models
    4416 
    4417 > show #!3 models
    4418 
    4419 > show #!2 models
    4420 
    4421 > hide #!3 models
    4422 
    4423 > hide #!4 models
    4424 
    4425 > show #!4 models
    4426 
    4427 > hide #!2 models
    4428 
    4429 > show #!2 models
    4430 
    4431 > hide #!2 models
    4432 
    4433 > show #!2 models
    4434 
    4435 > hide #!2 models
    4436 
    4437 > show #!2 models
    4438 
    4439 > hide #!2 models
    4440 
    4441 > show #!2 models
    4442 
    4443 > hide #!2 models
    4444 
    4445 > show #!2 models
    4446 
    4447 > hide #!2 models
    4448 
    4449 > show #!1 models
    4450 
    4451 > color zone #1 near #4 distance 11.3
    4452 
    4453 > transparency 50
    4454 
    4455 > transparency 0
    4456 
    4457 > show #!3 models
    4458 
    4459 > hide #!4 models
    4460 
    4461 > show #!4 models
    4462 
    4463 > hide #!4 models
    4464 
    4465 > show #!4 models
    4466 
    4467 > hide #!3 models
    4468 
    4469 > show #!3 models
    4470 
    4471 > hide #!3 models
    4472 
    4473 > show #!3 models
    4474 
    4475 > hide #!3 models
    4476 
    4477 > show #!3 models
    4478 
    4479 > hide #!3 models
    4480 
    4481 > show #!3 models
    4482 
    4483 > hide #!3 models
    4484 
    4485 > show #!3 models
    4486 
    4487 > hide #!3 models
    4488 
    4489 > hide #!4 models
    4490 
    4491 > show #!4 models
    4492 
    4493 > hide #!4 models
    4494 
    4495 > show #!4 models
    4496 
    4497 > split 4
    4498 
    4499 Expected a structures specifier or a keyword 
    4500 
    4501 > split #4
    4502 
    4503 Split combination (#4) into 17 models 
    4504 Chain information for combination K #4.1 
    4505 --- 
    4506 Chain | Description 
    4507 K | No description available 
    4508  
    4509 Chain information for combination L #4.2 
    4510 --- 
    4511 Chain | Description 
    4512 L | No description available 
    4513  
    4514 Chain information for combination M #4.3 
    4515 --- 
    4516 Chain | Description 
    4517 M | No description available 
    4518  
    4519 Chain information for combination N #4.4 
    4520 --- 
    4521 Chain | Description 
    4522 N | No description available 
    4523  
    4524 Chain information for combination O #4.5 
    4525 --- 
    4526 Chain | Description 
    4527 O | No description available 
    4528  
    4529 Chain information for combination P #4.6 
    4530 --- 
    4531 Chain | Description 
    4532 P | No description available 
    4533  
    4534 Chain information for combination Q #4.7 
    4535 --- 
    4536 Chain | Description 
    4537 Q | No description available 
    4538  
    4539 Chain information for combination R #4.8 
    4540 --- 
    4541 Chain | Description 
    4542 R | No description available 
    4543  
    4544 Chain information for combination S #4.9 
    4545 --- 
    4546 Chain | Description 
    4547 S | No description available 
    4548  
    4549 Chain information for combination T #4.10 
    4550 --- 
    4551 Chain | Description 
    4552 T | No description available 
    4553  
    4554 Chain information for combination U #4.11 
    4555 --- 
    4556 Chain | Description 
    4557 U | No description available 
    4558  
    4559 Chain information for combination V #4.12 
    4560 --- 
    4561 Chain | Description 
    4562 V | No description available 
    4563  
    4564 Chain information for combination W #4.13 
    4565 --- 
    4566 Chain | Description 
    4567 W | No description available 
    4568  
    4569 Chain information for combination X #4.14 
    4570 --- 
    4571 Chain | Description 
    4572 X | No description available 
    4573  
    4574 Chain information for combination Y #4.15 
    4575 --- 
    4576 Chain | Description 
    4577 Y | No description available 
    4578  
    4579 Chain information for combination Z #4.16 
    4580 --- 
    4581 Chain | Description 
    4582 Z | No description available 
    4583  
    4584 Chain information for combination a #4.17 
    4585 --- 
    4586 Chain | Description 
    4587 a | No description available 
    4588  
    4589 
    4590 > hide #4.8 models
    4591 
    4592 > hide #!4.9 models
    4593 
    4594 > hide #4.10 models
    4595 
    4596 > hide #!4.11 models
    4597 
    4598 > hide #4.12 models
    4599 
    4600 > hide #4.13 models
    4601 
    4602 > hide #4.14 models
    4603 
    4604 > hide #4.15 models
    4605 
    4606 > hide #!4.16 models
    4607 
    4608 > hide #!4.17 models
    4609 
    4610 > select add #2.1
    4611 
    4612 1720 atoms, 1759 bonds, 229 residues, 1 model selected 
    4613 
    4614 > select subtract #2.1
    4615 
    4616 Nothing selected 
    4617 
    4618 > select add #2
    4619 
    4620 57246 atoms, 58302 bonds, 15 pseudobonds, 7518 residues, 44 models selected 
    4621 
    4622 > select subtract #2
    4623 
    4624 Nothing selected 
    4625 
    4626 > show #!2 models
    4627 
    4628 > hide #2.1 models
    4629 
    4630 > hide #2.2 models
    4631 
    4632 > hide #2.3 models
    4633 
    4634 > hide #!2.4 models
    4635 
    4636 > hide #2.5 models
    4637 
    4638 > hide #2.6 models
    4639 
    4640 > show #2.6 models
    4641 
    4642 > hide #2.7 models
    4643 
    4644 > hide #2.8 models
    4645 
    4646 > hide #2.6 models
    4647 
    4648 > hide #!2.9 models
    4649 
    4650 > hide #!2.10 models
    4651 
    4652 > hide #!2.11 models
    4653 
    4654 > hide #2.12 models
    4655 
    4656 > hide #2.13 models
    4657 
    4658 > hide #2.14 models
    4659 
    4660 > hide #2.15 models
    4661 
    4662 > hide #2.16 models
    4663 
    4664 > hide #2.17 models
    4665 
    4666 > hide #2.18 models
    4667 
    4668 > hide #!2.19 models
    4669 
    4670 > hide #2.20 models
    4671 
    4672 > hide #!2.21 models
    4673 
    4674 > hide #2.22 models
    4675 
    4676 > hide #2.23 models
    4677 
    4678 > hide #2.24 models
    4679 
    4680 > hide #2.25 models
    4681 
    4682 > hide #!2.26 models
    4683 
    4684 > hide #!2.27 models
    4685 
    4686 > hide #2.28 models
    4687 
    4688 > hide #2.29 models
    4689 
    4690 > hide #2.30 models
    4691 
    4692 > hide #2.31 models
    4693 
    4694 > hide #!2.32 models
    4695 
    4696 > hide #2.33 models
    4697 
    4698 > hide #2.34 models
    4699 
    4700 > hide #!2 models
    4701 
    4702 > hide #!1 models
    4703 
    4704 > show #2.1 models
    4705 
    4706 > show #2.2 models
    4707 
    4708 > show #2.3 models
    4709 
    4710 > show #!2.4 models
    4711 
    4712 > show #2.5 models
    4713 
    4714 > show #2.6 models
    4715 
    4716 > show #2.7 models
    4717 
    4718 > show #2.8 models
    4719 
    4720 > show #!2.9 models
    4721 
    4722 > show #!2.10 models
    4723 
    4724 > select add #2.1
    4725 
    4726 1720 atoms, 1759 bonds, 229 residues, 1 model selected 
    4727 
    4728 > select add #2.2
    4729 
    4730 3522 atoms, 3589 bonds, 477 residues, 2 models selected 
    4731 
    4732 > select add #2.3
    4733 
    4734 5290 atoms, 5380 bonds, 714 residues, 3 models selected 
    4735 
    4736 > select add #2.4
    4737 
    4738 7063 atoms, 7181 bonds, 1 pseudobond, 952 residues, 5 models selected 
    4739 
    4740 > select add #2.5
    4741 
    4742 8972 atoms, 9127 bonds, 1 pseudobond, 1199 residues, 6 models selected 
    4743 
    4744 > select add #2.6
    4745 
    4746 10819 atoms, 11009 bonds, 1 pseudobond, 1440 residues, 7 models selected 
    4747 
    4748 > select add #2.7
    4749 
    4750 12684 atoms, 12907 bonds, 1 pseudobond, 1686 residues, 8 models selected 
    4751 
    4752 > select add #2.8
    4753 
    4754 13573 atoms, 13811 bonds, 1 pseudobond, 1797 residues, 9 models selected 
    4755 
    4756 > select add #2.9
    4757 
    4758 15613 atoms, 15894 bonds, 4 pseudobonds, 2065 residues, 11 models selected 
    4759 
    4760 > select add #2.10
    4761 
    4762 17496 atoms, 17817 bonds, 6 pseudobonds, 2313 residues, 13 models selected 
    4763 
    4764 > select add #4
    4765 
    4766 46050 atoms, 46898 bonds, 14 pseudobonds, 6066 residues, 36 models selected 
    4767 
    4768 > select subtract #4
    4769 
    4770 17496 atoms, 17817 bonds, 6 pseudobonds, 2313 residues, 13 models selected 
    4771 
    4772 > select add #4.1
    4773 
    4774 19371 atoms, 19723 bonds, 7 pseudobonds, 2564 residues, 15 models selected 
    4775 
    4776 > select add #4.2
    4777 
    4778 20962 atoms, 21343 bonds, 7 pseudobonds, 2768 residues, 16 models selected 
    4779 
    4780 > select add #4.3
    4781 
    4782 22530 atoms, 22944 bonds, 7 pseudobonds, 2965 residues, 17 models selected 
    4783 
    4784 > select add #4.4
    4785 
    4786 24079 atoms, 24524 bonds, 7 pseudobonds, 3165 residues, 18 models selected 
    4787 
    4788 > select add #4.5
    4789 
    4790 25722 atoms, 26197 bonds, 7 pseudobonds, 3377 residues, 19 models selected 
    4791 
    4792 > select add #4.6
    4793 
    4794 27345 atoms, 27851 bonds, 7 pseudobonds, 3585 residues, 20 models selected 
    4795 
    4796 > select add #4.7
    4797 
    4798 28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected 
    4799 
    4800 > show #!1 models
    4801 
    4802 > combine sel
    4803 
    4804 > hide #!4 models
    4805 
    4806 > hide #!2 models
    4807 
    4808 > color zone #1 near #5 distance 11.3
    4809 
    4810 > fitmap #5 inMap #1
    4811 
    4812 Fit molecule combination (#5) to map
    4813 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
    4814 atoms 
    4815 average map value = 0.3023, steps = 36 
    4816 shifted from previous position = 0.0408 
    4817 rotated from previous position = 0.00974 degrees 
    4818 atoms outside contour = 6710, contour level = 0.12 
    4819  
    4820 Position of combination (#5) relative to
    4821 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    4822 Matrix rotation and translation 
    4823 1.00000000 -0.00001293 -0.00004818 0.04488739 
    4824 0.00001294 0.99999999 0.00016254 -0.01066532 
    4825 0.00004818 -0.00016254 0.99999999 0.02476895 
    4826 Axis -0.95598611 -0.28337362 0.07609178 
    4827 Axis point 0.00000000 170.16262033 131.88556380 
    4828 Rotation angle (degrees) 0.00974184 
    4829 Shift along axis -0.03800473 
    4830  
    4831 
    4832 > fitmap #5 inMap #1
    4833 
    4834 Fit molecule combination (#5) to map
    4835 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
    4836 atoms 
    4837 average map value = 0.3023, steps = 40 
    4838 shifted from previous position = 0.0141 
    4839 rotated from previous position = 0.00922 degrees 
    4840 atoms outside contour = 6706, contour level = 0.12 
    4841  
    4842 Position of combination (#5) relative to
    4843 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    4844 Matrix rotation and translation 
    4845 0.99999999 0.00009943 -0.00008556 0.03076750 
    4846 -0.00009943 0.99999999 0.00005366 0.02638276 
    4847 0.00008556 -0.00005366 0.99999999 -0.00551184 
    4848 Axis -0.37862231 -0.60370823 -0.70155650 
    4849 Axis point 121.39937934 -219.14042275 0.00000000 
    4850 Rotation angle (degrees) 0.00812030 
    4851 Shift along axis -0.02370989 
    4852  
    4853 
    4854 > fitmap #5 inMap #1
    4855 
    4856 Fit molecule combination (#5) to map
    4857 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
    4858 atoms 
    4859 average map value = 0.3024, steps = 40 
    4860 shifted from previous position = 0.0355 
    4861 rotated from previous position = 0.0151 degrees 
    4862 atoms outside contour = 6703, contour level = 0.12 
    4863  
    4864 Position of combination (#5) relative to
    4865 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    4866 Matrix rotation and translation 
    4867 0.99999997 0.00020762 0.00014925 -0.05458065 
    4868 -0.00020762 0.99999998 -0.00000047 0.04181406 
    4869 -0.00014925 0.00000044 0.99999999 0.03057363 
    4870 Axis 0.00179065 0.58368775 -0.81197624 
    4871 Axis point 202.82044299 262.91307017 0.00000000 
    4872 Rotation angle (degrees) 0.01465046 
    4873 Shift along axis -0.00051644 
    4874  
    4875 
    4876 > fitmap #5 inMap #1
    4877 
    4878 Fit molecule combination (#5) to map
    4879 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
    4880 atoms 
    4881 average map value = 0.3023, steps = 28 
    4882 shifted from previous position = 0.0268 
    4883 rotated from previous position = 0.0144 degrees 
    4884 atoms outside contour = 6703, contour level = 0.12 
    4885  
    4886 Position of combination (#5) relative to
    4887 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    4888 Matrix rotation and translation 
    4889 1.00000000 0.00002559 0.00001562 0.01822379 
    4890 -0.00002559 0.99999999 0.00010870 0.00396059 
    4891 -0.00001562 -0.00010870 0.99999999 0.02718273 
    4892 Axis -0.96400970 0.13853707 -0.22692020 
    4893 Axis point 0.00000000 201.67477696 -65.97879906 
    4894 Rotation angle (degrees) 0.00646037 
    4895 Shift along axis -0.02318753 
    4896  
    4897 
    4898 > fitmap #5 inMap #1
    4899 
    4900 Fit molecule combination (#5) to map
    4901 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
    4902 atoms 
    4903 average map value = 0.3024, steps = 40 
    4904 shifted from previous position = 0.0237 
    4905 rotated from previous position = 0.00628 degrees 
    4906 atoms outside contour = 6706, contour level = 0.12 
    4907  
    4908 Position of combination (#5) relative to
    4909 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    4910 Matrix rotation and translation 
    4911 1.00000000 0.00000538 -0.00008487 0.01691860 
    4912 -0.00000537 0.99999999 0.00014727 -0.01338798 
    4913 0.00008487 -0.00014727 0.99999999 0.02729926 
    4914 Axis -0.86598736 -0.49906574 -0.03161156 
    4915 Axis point 0.00000000 183.45838002 120.85152622 
    4916 Rotation angle (degrees) 0.00974388 
    4917 Shift along axis -0.00883279 
    4918  
    4919 
    4920 > fitmap #5 inMap #1
    4921 
    4922 Fit molecule combination (#5) to map
    4923 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
    4924 atoms 
    4925 average map value = 0.3022, steps = 40 
    4926 shifted from previous position = 0.0353 
    4927 rotated from previous position = 0.0176 degrees 
    4928 atoms outside contour = 6703, contour level = 0.12 
    4929  
    4930 Position of combination (#5) relative to
    4931 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    4932 Matrix rotation and translation 
    4933 0.99999999 -0.00000251 0.00015530 0.00801717 
    4934 0.00000252 1.00000000 -0.00004330 0.02944592 
    4935 -0.00015530 0.00004330 0.99999999 0.01904566 
    4936 Axis 0.26855366 0.96313829 0.01560631 
    4937 Axis point 119.53797027 0.00000000 1.66521043 
    4938 Rotation angle (degrees) 0.00923886 
    4939 Shift along axis 0.03081076 
    4940  
    4941 
    4942 > split #5
    4943 
    4944 Split combination (#5) into 17 models 
    4945 Chain information for combination A #5.1 
    4946 --- 
    4947 Chain | Description 
    4948 A | No description available 
    4949  
    4950 Chain information for combination B #5.2 
    4951 --- 
    4952 Chain | Description 
    4953 B | No description available 
    4954  
    4955 Chain information for combination C #5.3 
    4956 --- 
    4957 Chain | Description 
    4958 C | No description available 
    4959  
    4960 Chain information for combination D #5.4 
    4961 --- 
    4962 Chain | Description 
    4963 D | No description available 
    4964  
    4965 Chain information for combination E #5.5 
    4966 --- 
    4967 Chain | Description 
    4968 E | No description available 
    4969  
    4970 Chain information for combination F #5.6 
    4971 --- 
    4972 Chain | Description 
    4973 F | No description available 
    4974  
    4975 Chain information for combination G #5.7 
    4976 --- 
    4977 Chain | Description 
    4978 G | No description available 
    4979  
    4980 Chain information for combination H #5.8 
    4981 --- 
    4982 Chain | Description 
    4983 H | No description available 
    4984  
    4985 Chain information for combination I #5.9 
    4986 --- 
    4987 Chain | Description 
    4988 I | No description available 
    4989  
    4990 Chain information for combination J #5.10 
    4991 --- 
    4992 Chain | Description 
    4993 J | No description available 
    4994  
    4995 Chain information for combination K #5.11 
    4996 --- 
    4997 Chain | Description 
    4998 K | No description available 
    4999  
    5000 Chain information for combination L #5.12 
    5001 --- 
    5002 Chain | Description 
    5003 L | No description available 
    5004  
    5005 Chain information for combination M #5.13 
    5006 --- 
    5007 Chain | Description 
    5008 M | No description available 
    5009  
    5010 Chain information for combination N #5.14 
    5011 --- 
    5012 Chain | Description 
    5013 N | No description available 
    5014  
    5015 Chain information for combination O #5.15 
    5016 --- 
    5017 Chain | Description 
    5018 O | No description available 
    5019  
    5020 Chain information for combination P #5.16 
    5021 --- 
    5022 Chain | Description 
    5023 P | No description available 
    5024  
    5025 Chain information for combination Q #5.17 
    5026 --- 
    5027 Chain | Description 
    5028 Q | No description available 
    5029  
    5030 
    5031 > select add #5.1
    5032 
    5033 30520 atoms, 31090 bonds, 7 pseudobonds, 4009 residues, 22 models selected 
    5034 
    5035 > show #!3 models
    5036 
    5037 > hide #!3 models
    5038 
    5039 > hide #!1 models
    5040 
    5041 > hide #!5 models
    5042 
    5043 > show #!2 models
    5044 
    5045 > show #!2.26 models
    5046 
    5047 > hide #!2.26 models
    5048 
    5049 > show #!2.26 models
    5050 
    5051 > hide #!2.26 models
    5052 
    5053 > show #!2.27 models
    5054 
    5055 > hide #!2.27 models
    5056 
    5057 > show #!2.27 models
    5058 
    5059 > hide #!2.27 models
    5060 
    5061 > select subtract #5.1
    5062 
    5063 28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected 
    5064 
    5065 > hide #!2 models
    5066 
    5067 > show #!3 models
    5068 
    5069 > hide #!3 models
    5070 
    5071 > show #!4 models
    5072 
    5073 > hide #!4 models
    5074 
    5075 > show #!4 models
    5076 
    5077 > show #!2 models
    5078 
    5079 > hide #!2 models
    5080 
    5081 > hide #!4 models
    5082 
    5083 > show #!5 models
    5084 
    5085 > select add #5.1
    5086 
    5087 30520 atoms, 31090 bonds, 7 pseudobonds, 4009 residues, 22 models selected 
    5088 
    5089 > show #!1 models
    5090 
    5091 > transparency 50
    5092 
    5093 > view matrix models
    5094 > #2.1,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.2,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.3,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.4,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.5,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.6,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.7,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.8,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.9,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#2.10,0.99043,-0.13784,0.0069621,12.97,0.13713,0.98852,0.063416,-26.899,-0.015623,-0.061855,0.99796,8.1187,#4.1,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.2,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.3,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.4,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.5,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.6,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#4.7,-0.99043,0.13781,0.0071845,282.99,-0.13709,-0.98854,0.063274,329.67,0.015822,0.061684,0.99797,-16.438,#5.1,0.99043,-0.13784,0.0071219,12.974,0.13712,0.98852,0.063395,-26.868,-0.015778,-0.061811,0.99796,8.1357
    5095 
    5096 > undo
    5097 
    5098 > ui mousemode right "rotate selected models"
    5099 
    5100 > ui mousemode right select
    5101 
    5102 > fitmap #5.1 inMap #1
    5103 
    5104 Fit molecule combination A (#5.1) to map
    5105 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1720
    5106 atoms 
    5107 average map value = 0.3413, steps = 40 
    5108 shifted from previous position = 0.053 
    5109 rotated from previous position = 0.142 degrees 
    5110 atoms outside contour = 270, contour level = 0.12 
    5111  
    5112 Position of combination A (#5.1) relative to
    5113 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5114 Matrix rotation and translation 
    5115 0.99999987 -0.00014443 0.00048105 -0.06767842 
    5116 0.00014327 0.99999707 0.00241711 -0.38461886 
    5117 -0.00048140 -0.00241704 0.99999696 0.25393103 
    5118 Axis -0.97908452 0.19493112 0.05826980 
    5119 Axis point 0.00000000 104.71133799 159.74133817 
    5120 Rotation angle (degrees) 0.14144665 
    5121 Shift along axis 0.00608522 
    5122  
    5123 
    5124 > fitmap #5.1 inMap #1
    5125 
    5126 Fit molecule combination A (#5.1) to map
    5127 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1720
    5128 atoms 
    5129 average map value = 0.3413, steps = 48 
    5130 shifted from previous position = 0.00162 
    5131 rotated from previous position = 0.0316 degrees 
    5132 atoms outside contour = 272, contour level = 0.12 
    5133  
    5134 Position of combination A (#5.1) relative to
    5135 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5136 Matrix rotation and translation 
    5137 0.99999987 0.00038156 0.00032756 -0.09055737 
    5138 -0.00038233 0.99999715 0.00235454 -0.30191074 
    5139 -0.00032667 -0.00235467 0.99999717 0.22640944 
    5140 Axis -0.97794486 0.13586165 -0.15863624 
    5141 Axis point 0.00000000 96.78188161 129.01257642 
    5142 Rotation angle (degrees) 0.13795157 
    5143 Shift along axis 0.01162528 
    5144  
    5145 
    5146 > fitmap #5.1 inMap #1
    5147 
    5148 Fit molecule combination A (#5.1) to map
    5149 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1720
    5150 atoms 
    5151 average map value = 0.3412, steps = 48 
    5152 shifted from previous position = 0.00755 
    5153 rotated from previous position = 0.0278 degrees 
    5154 atoms outside contour = 271, contour level = 0.12 
    5155  
    5156 Position of combination A (#5.1) relative to
    5157 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5158 Matrix rotation and translation 
    5159 0.99999995 -0.00010336 0.00031290 -0.03829829 
    5160 0.00010263 0.99999727 0.00233421 -0.36312342 
    5161 -0.00031314 -0.00233418 0.99999723 0.21721202 
    5162 Axis -0.99018140 0.13278565 0.04368943 
    5163 Axis point 0.00000000 92.88731643 155.62859774 
    5164 Rotation angle (degrees) 0.13506581 
    5165 Shift along axis -0.00080545 
    5166  
    5167 
    5168 > fitmap #5.1 inMap #1
    5169 
    5170 Fit molecule combination A (#5.1) to map
    5171 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1720
    5172 atoms 
    5173 average map value = 0.3414, steps = 28 
    5174 shifted from previous position = 0.0283 
    5175 rotated from previous position = 0.046 degrees 
    5176 atoms outside contour = 272, contour level = 0.12 
    5177  
    5178 Position of combination A (#5.1) relative to
    5179 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5180 Matrix rotation and translation 
    5181 0.99999945 -0.00024274 0.00102203 -0.15643426 
    5182 0.00024000 0.99999637 0.00268297 -0.44729935 
    5183 -0.00102268 -0.00268272 0.99999588 0.36716941 
    5184 Axis -0.93116609 0.35484013 0.08377464 
    5185 Axis point 0.00000000 136.05145639 169.24361450 
    5186 Rotation angle (degrees) 0.16507911 
    5187 Shift along axis 0.01770600 
    5188  
    5189 
    5190 > fitmap #5.2 inMap #1
    5191 
    5192 Fit molecule combination B (#5.2) to map
    5193 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5194 atoms 
    5195 average map value = 0.3273, steps = 28 
    5196 shifted from previous position = 0.0451 
    5197 rotated from previous position = 0.188 degrees 
    5198 atoms outside contour = 332, contour level = 0.12 
    5199  
    5200 Position of combination B (#5.2) relative to
    5201 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5202 Matrix rotation and translation 
    5203 0.99999632 0.00194753 -0.00188954 0.16920159 
    5204 -0.00194443 0.99999676 0.00164264 -0.03766470 
    5205 0.00189274 -0.00163896 0.99999687 -0.07536082 
    5206 Axis -0.51743369 -0.59637884 -0.61367308 
    5207 Axis point -25.01292413 -81.92142410 0.00000000 
    5208 Rotation angle (degrees) 0.18168735 
    5209 Shift along axis -0.01884126 
    5210  
    5211 
    5212 > fitmap #5.2 inMap #1
    5213 
    5214 Fit molecule combination B (#5.2) to map
    5215 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5216 atoms 
    5217 average map value = 0.3273, steps = 28 
    5218 shifted from previous position = 0.032 
    5219 rotated from previous position = 0.0115 degrees 
    5220 atoms outside contour = 331, contour level = 0.12 
    5221  
    5222 Position of combination B (#5.2) relative to
    5223 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5224 Matrix rotation and translation 
    5225 0.99999675 0.00186293 -0.00173860 0.17196425 
    5226 -0.00186026 0.99999708 0.00153982 -0.03820704 
    5227 0.00174146 -0.00153658 0.99999730 -0.08489080 
    5228 Axis -0.51678832 -0.58459771 -0.62544013 
    5229 Axis point -24.62302485 -88.62303706 0.00000000 
    5230 Rotation angle (degrees) 0.17053876 
    5231 Shift along axis -0.01343925 
    5232  
    5233 
    5234 > fitmap #5.2 inMap #1
    5235 
    5236 Fit molecule combination B (#5.2) to map
    5237 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5238 atoms 
    5239 average map value = 0.3273, steps = 40 
    5240 shifted from previous position = 0.0113 
    5241 rotated from previous position = 0.00823 degrees 
    5242 atoms outside contour = 331, contour level = 0.12 
    5243  
    5244 Position of combination B (#5.2) relative to
    5245 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5246 Matrix rotation and translation 
    5247 0.99999640 0.00198829 -0.00180397 0.16441388 
    5248 -0.00198547 0.99999680 0.00156522 -0.02173207 
    5249 0.00180708 -0.00156163 0.99999715 -0.08475845 
    5250 Axis -0.50323407 -0.58116184 -0.63953607 
    5251 Axis point -15.47375493 -78.69421275 0.00000000 
    5252 Rotation angle (degrees) 0.17800386 
    5253 Shift along axis -0.01590273 
    5254  
    5255 
    5256 > select add #5
    5257 
    5258 57600 atoms, 58662 bonds, 14 pseudobonds, 7560 residues, 43 models selected 
    5259 
    5260 > select subtract #5
    5261 
    5262 28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected 
    5263 
    5264 > select add #5.1
    5265 
    5266 30520 atoms, 31090 bonds, 7 pseudobonds, 4009 residues, 22 models selected 
    5267 
    5268 > select add #5.2
    5269 
    5270 32322 atoms, 32920 bonds, 7 pseudobonds, 4257 residues, 23 models selected 
    5271 
    5272 > select subtract #5.1
    5273 
    5274 30602 atoms, 31161 bonds, 7 pseudobonds, 4028 residues, 22 models selected 
    5275 
    5276 > select add #5.3
    5277 
    5278 32370 atoms, 32952 bonds, 7 pseudobonds, 4265 residues, 23 models selected 
    5279 
    5280 > select subtract #5.2
    5281 
    5282 30568 atoms, 31122 bonds, 7 pseudobonds, 4017 residues, 22 models selected 
    5283 
    5284 > fitmap #5.2 inMap #1
    5285 
    5286 Fit molecule combination B (#5.2) to map
    5287 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5288 atoms 
    5289 average map value = 0.3272, steps = 40 
    5290 shifted from previous position = 0.0214 
    5291 rotated from previous position = 0.0124 degrees 
    5292 atoms outside contour = 332, contour level = 0.12 
    5293  
    5294 Position of combination B (#5.2) relative to
    5295 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5296 Matrix rotation and translation 
    5297 0.99999607 0.00206866 -0.00189026 0.15780104 
    5298 -0.00206536 0.99999634 0.00174742 -0.04096312 
    5299 0.00189387 -0.00174351 0.99999669 -0.06466432 
    5300 Axis -0.52870715 -0.57311378 -0.62610650 
    5301 Axis point -25.10889323 -71.35384233 0.00000000 
    5302 Rotation angle (degrees) 0.18915526 
    5303 Shift along axis -0.01946725 
    5304  
    5305 
    5306 > fitmap #5.2 inMap #1
    5307 
    5308 Fit molecule combination B (#5.2) to map
    5309 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5310 atoms 
    5311 average map value = 0.3274, steps = 28 
    5312 shifted from previous position = 0.0463 
    5313 rotated from previous position = 0.0653 degrees 
    5314 atoms outside contour = 332, contour level = 0.12 
    5315  
    5316 Position of combination B (#5.2) relative to
    5317 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5318 Matrix rotation and translation 
    5319 0.99999676 0.00176926 -0.00182951 0.19913342 
    5320 -0.00176807 0.99999823 0.00064807 0.11839739 
    5321 0.00183065 -0.00064483 0.99999812 -0.20096513 
    5322 Axis -0.24618245 -0.69693897 -0.67355050 
    5323 Axis point 108.48417930 0.00000000 109.16735892 
    5324 Rotation angle (degrees) 0.15045232 
    5325 Shift along axis 0.00382125 
    5326  
    5327 
    5328 > fitmap #5.2 inMap #1
    5329 
    5330 Fit molecule combination B (#5.2) to map
    5331 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5332 atoms 
    5333 average map value = 0.3273, steps = 40 
    5334 shifted from previous position = 0.0484 
    5335 rotated from previous position = 0.0632 degrees 
    5336 atoms outside contour = 332, contour level = 0.12 
    5337  
    5338 Position of combination B (#5.2) relative to
    5339 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5340 Matrix rotation and translation 
    5341 0.99999665 0.00189716 -0.00175967 0.14848035 
    5342 -0.00189409 0.99999669 0.00174145 -0.06137092 
    5343 0.00176297 -0.00173811 0.99999694 -0.04630911 
    5344 Axis -0.55796352 -0.56487126 -0.60794504 
    5345 Axis point -38.24712152 -72.44228174 0.00000000 
    5346 Rotation angle (degrees) 0.17865335 
    5347 Shift along axis -0.02002656 
    5348  
    5349 
    5350 > fitmap #5.2 inMap #1
    5351 
    5352 Fit molecule combination B (#5.2) to map
    5353 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5354 atoms 
    5355 average map value = 0.3274, steps = 28 
    5356 shifted from previous position = 0.0449 
    5357 rotated from previous position = 0.0432 degrees 
    5358 atoms outside contour = 333, contour level = 0.12 
    5359  
    5360 Position of combination B (#5.2) relative to
    5361 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5362 Matrix rotation and translation 
    5363 0.99999698 0.00170433 -0.00177267 0.19498351 
    5364 -0.00170254 0.99999804 0.00101205 0.04071982 
    5365 0.00177439 -0.00100903 0.99999792 -0.15373000 
    5366 Axis -0.38009859 -0.66708512 -0.64072030 
    5367 Axis point 87.76975472 0.00000000 109.24874400 
    5368 Rotation angle (degrees) 0.15232832 
    5369 Shift along axis -0.00277861 
    5370  
    5371 
    5372 > select add #5.4
    5373 
    5374 32341 atoms, 32923 bonds, 8 pseudobonds, 4255 residues, 24 models selected 
    5375 
    5376 > select subtract #5.3
    5377 
    5378 30573 atoms, 31132 bonds, 8 pseudobonds, 4018 residues, 23 models selected 
    5379 
    5380 > fitmap #5.2 inMap #1
    5381 
    5382 Fit molecule combination B (#5.2) to map
    5383 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5384 atoms 
    5385 average map value = 0.3272, steps = 40 
    5386 shifted from previous position = 0.045 
    5387 rotated from previous position = 0.0527 degrees 
    5388 atoms outside contour = 333, contour level = 0.12 
    5389  
    5390 Position of combination B (#5.2) relative to
    5391 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5392 Matrix rotation and translation 
    5393 0.99999617 0.00204557 -0.00186320 0.15339725 
    5394 -0.00204211 0.99999618 0.00186154 -0.06556602 
    5395 0.00186700 -0.00185772 0.99999653 -0.04840320 
    5396 Axis -0.55781336 -0.55945571 -0.61306897 
    5397 Axis point -37.23965871 -69.82075763 0.00000000 
    5398 Rotation angle (degrees) 0.19101210 
    5399 Shift along axis -0.01921125 
    5400  
    5401 
    5402 > fitmap #5.2 inMap #1
    5403 
    5404 Fit molecule combination B (#5.2) to map
    5405 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5406 atoms 
    5407 average map value = 0.3274, steps = 40 
    5408 shifted from previous position = 0.0284 
    5409 rotated from previous position = 0.0413 degrees 
    5410 atoms outside contour = 332, contour level = 0.12 
    5411  
    5412 Position of combination B (#5.2) relative to
    5413 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5414 Matrix rotation and translation 
    5415 0.99999682 0.00178086 -0.00178776 0.18373265 
    5416 -0.00177872 0.99999770 0.00119554 0.02027378 
    5417 0.00178988 -0.00119235 0.99999769 -0.12271194 
    5418 Axis -0.42769170 -0.64078617 -0.63755227 
    5419 Axis point 73.43773789 0.00000000 99.45134682 
    5420 Rotation angle (degrees) 0.15994714 
    5421 Shift along axis -0.01333681 
    5422  
    5423 
    5424 > fitmap #5.2 inMap #1
    5425 
    5426 Fit molecule combination B (#5.2) to map
    5427 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5428 atoms 
    5429 average map value = 0.3272, steps = 40 
    5430 shifted from previous position = 0.0228 
    5431 rotated from previous position = 0.0464 degrees 
    5432 atoms outside contour = 333, contour level = 0.12 
    5433  
    5434 Position of combination B (#5.2) relative to
    5435 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5436 Matrix rotation and translation 
    5437 0.99999604 0.00208393 -0.00189123 0.15918667 
    5438 -0.00208026 0.99999595 0.00193997 -0.07683383 
    5439 0.00189526 -0.00193603 0.99999633 -0.04812908 
    5440 Axis -0.56717745 -0.55407948 -0.60934856 
    5441 Axis point -41.69328581 -71.46239601 0.00000000 
    5442 Rotation angle (degrees) 0.19577559 
    5443 Shift along axis -0.01838766 
    5444  
    5445 
    5446 > fitmap #5.2 inMap #1
    5447 
    5448 Fit molecule combination B (#5.2) to map
    5449 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5450 atoms 
    5451 average map value = 0.3274, steps = 28 
    5452 shifted from previous position = 0.0408 
    5453 rotated from previous position = 0.0635 degrees 
    5454 atoms outside contour = 334, contour level = 0.12 
    5455  
    5456 Position of combination B (#5.2) relative to
    5457 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5458 Matrix rotation and translation 
    5459 0.99999702 0.00167597 -0.00177723 0.19892382 
    5460 -0.00167434 0.99999818 0.00091580 0.05529019 
    5461 0.00177876 -0.00091283 0.99999800 -0.16493651 
    5462 Axis -0.35053726 -0.68165997 -0.64223307 
    5463 Axis point 93.38949904 0.00000000 111.47838496 
    5464 Rotation angle (degrees) 0.14944628 
    5465 Shift along axis -0.00149164 
    5466  
    5467 
    5468 > fitmap #5.2 inMap #1
    5469 
    5470 Fit molecule combination B (#5.2) to map
    5471 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5472 atoms 
    5473 average map value = 0.3272, steps = 40 
    5474 shifted from previous position = 0.0453 
    5475 rotated from previous position = 0.0594 degrees 
    5476 atoms outside contour = 333, contour level = 0.12 
    5477  
    5478 Position of combination B (#5.2) relative to
    5479 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5480 Matrix rotation and translation 
    5481 0.99999576 0.00221638 -0.00188842 0.14480242 
    5482 -0.00221299 0.99999594 0.00179448 -0.02962851 
    5483 0.00189239 -0.00179030 0.99999661 -0.05753536 
    5484 Axis -0.52420869 -0.55287550 -0.64771439 
    5485 Axis point -18.83931489 -60.10426990 0.00000000 
    5486 Rotation angle (degrees) 0.19590772 
    5487 Shift along axis -0.02225932 
    5488  
    5489 
    5490 > select add #5.5
    5491 
    5492 32482 atoms, 33078 bonds, 8 pseudobonds, 4265 residues, 24 models selected 
    5493 
    5494 > select subtract #5.4
    5495 
    5496 30709 atoms, 31277 bonds, 7 pseudobonds, 4027 residues, 22 models selected 
    5497 
    5498 > fitmap #5.2 inMap #1
    5499 
    5500 Fit molecule combination B (#5.2) to map
    5501 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5502 atoms 
    5503 average map value = 0.3274, steps = 28 
    5504 shifted from previous position = 0.0366 
    5505 rotated from previous position = 0.0438 degrees 
    5506 atoms outside contour = 332, contour level = 0.12 
    5507  
    5508 Position of combination B (#5.2) relative to
    5509 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5510 Matrix rotation and translation 
    5511 0.99999691 0.00175813 -0.00175706 0.18618813 
    5512 -0.00175603 0.99999774 0.00119555 0.01510663 
    5513 0.00175915 -0.00119246 0.99999774 -0.12556137 
    5514 Axis -0.43299877 -0.63756729 -0.63719700 
    5515 Axis point 75.21898799 0.00000000 103.30942789 
    5516 Rotation angle (degrees) 0.15799444 
    5517 Shift along axis -0.01024340 
    5518  
    5519 
    5520 > fitmap #5.2 inMap #1
    5521 
    5522 Fit molecule combination B (#5.2) to map
    5523 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5524 atoms 
    5525 average map value = 0.3273, steps = 40 
    5526 shifted from previous position = 0.0329 
    5527 rotated from previous position = 0.0343 degrees 
    5528 atoms outside contour = 332, contour level = 0.12 
    5529  
    5530 Position of combination B (#5.2) relative to
    5531 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5532 Matrix rotation and translation 
    5533 0.99999607 0.00206106 -0.00190198 0.16284030 
    5534 -0.00205785 0.99999645 0.00169119 -0.03179377 
    5535 0.00190546 -0.00168727 0.99999676 -0.07355126 
    5536 Axis -0.51595504 -0.58146792 -0.62903534 
    5537 Axis point -20.76558175 -74.22492464 0.00000000 
    5538 Rotation angle (degrees) 0.18758600 
    5539 Shift along axis -0.01926487 
    5540  
    5541 
    5542 > fitmap #5.2 inMap #1
    5543 
    5544 Fit molecule combination B (#5.2) to map
    5545 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5546 atoms 
    5547 average map value = 0.3274, steps = 28 
    5548 shifted from previous position = 0.0398 
    5549 rotated from previous position = 0.0444 degrees 
    5550 atoms outside contour = 333, contour level = 0.12 
    5551  
    5552 Position of combination B (#5.2) relative to
    5553 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5554 Matrix rotation and translation 
    5555 0.99999700 0.00169536 -0.00177027 0.19564615 
    5556 -0.00169356 0.99999805 0.00101922 0.03826950 
    5557 0.00177199 -0.00101622 0.99999791 -0.15223992 
    5558 Axis -0.38346384 -0.66733733 -0.63844841 
    5559 Axis point 87.25578931 0.00000000 109.64082340 
    5560 Rotation angle (degrees) 0.15206479 
    5561 Shift along axis -0.00336456 
    5562  
    5563 
    5564 > fitmap #5.2 inMap #1
    5565 
    5566 Fit molecule combination B (#5.2) to map
    5567 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5568 atoms 
    5569 average map value = 0.3272, steps = 40 
    5570 shifted from previous position = 0.0457 
    5571 rotated from previous position = 0.0584 degrees 
    5572 atoms outside contour = 333, contour level = 0.12 
    5573  
    5574 Position of combination B (#5.2) relative to
    5575 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5576 Matrix rotation and translation 
    5577 0.99999602 0.00218121 -0.00178990 0.12656876 
    5578 -0.00217778 0.99999579 0.00191598 -0.05681822 
    5579 0.00179407 -0.00191207 0.99999656 -0.03242655 
    5580 Axis -0.56137550 -0.52558084 -0.63923574 
    5581 Axis point -30.92617629 -52.81709053 0.00000000 
    5582 Rotation angle (degrees) 0.19535209 
    5583 Shift along axis -0.02046182 
    5584  
    5585 
    5586 > fitmap #5.2 inMap #1
    5587 
    5588 Fit molecule combination B (#5.2) to map
    5589 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1802
    5590 atoms 
    5591 average map value = 0.3274, steps = 28 
    5592 shifted from previous position = 0.0467 
    5593 rotated from previous position = 0.0691 degrees 
    5594 atoms outside contour = 334, contour level = 0.12 
    5595  
    5596 Position of combination B (#5.2) relative to
    5597 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5598 Matrix rotation and translation 
    5599 0.99999703 0.00166314 -0.00178364 0.20092020 
    5600 -0.00166167 0.99999828 0.00082533 0.07090658 
    5601 0.00178501 -0.00082236 0.99999807 -0.17432325 
    5602 Axis -0.32004971 -0.69317680 -0.64581275 
    5603 Axis point 98.09786181 0.00000000 112.32579069 
    5604 Rotation angle (degrees) 0.14748649 
    5605 Shift along axis -0.00087507 
    5606  
    5607 
    5608 > fitmap #5.3 inMap #1
    5609 
    5610 Fit molecule combination C (#5.3) to map
    5611 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1768
    5612 atoms 
    5613 average map value = 0.3056, steps = 40 
    5614 shifted from previous position = 0.0421 
    5615 rotated from previous position = 0.205 degrees 
    5616 atoms outside contour = 374, contour level = 0.12 
    5617  
    5618 Position of combination C (#5.3) relative to
    5619 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5620 Matrix rotation and translation 
    5621 0.99999736 0.00121050 -0.00195553 0.30809893 
    5622 -0.00121573 0.99999569 -0.00267381 0.68825308 
    5623 0.00195229 0.00267618 0.99999451 -0.50249424 
    5624 Axis 0.75827304 -0.55386883 -0.34387688 
    5625 Axis point 0.00000000 185.06276669 262.33018072 
    5626 Rotation angle (degrees) 0.20212565 
    5627 Shift along axis 0.02521734 
    5628  
    5629 
    5630 > fitmap #5.3 inMap #1
    5631 
    5632 Fit molecule combination C (#5.3) to map
    5633 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1768
    5634 atoms 
    5635 average map value = 0.3056, steps = 40 
    5636 shifted from previous position = 0.00202 
    5637 rotated from previous position = 0.0131 degrees 
    5638 atoms outside contour = 374, contour level = 0.12 
    5639  
    5640 Position of combination C (#5.3) relative to
    5641 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5642 Matrix rotation and translation 
    5643 0.99999713 0.00127702 -0.00202729 0.31679638 
    5644 -0.00128202 0.99999613 -0.00246731 0.65366717 
    5645 0.00202413 0.00246990 0.99999490 -0.48652470 
    5646 Axis 0.71758430 -0.58884266 -0.37193695 
    5647 Axis point 0.00000000 194.01881115 270.20634326 
    5648 Rotation angle (degrees) 0.19710714 
    5649 Shift along axis 0.02337751 
    5650  
    5651 
    5652 > fitmap #5.3 inMap #1
    5653 
    5654 Fit molecule combination C (#5.3) to map
    5655 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1768
    5656 atoms 
    5657 average map value = 0.3055, steps = 44 
    5658 shifted from previous position = 0.0168 
    5659 rotated from previous position = 0.0194 degrees 
    5660 atoms outside contour = 376, contour level = 0.12 
    5661  
    5662 Position of combination C (#5.3) relative to
    5663 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5664 Matrix rotation and translation 
    5665 0.99999707 0.00117080 -0.00211850 0.34849132 
    5666 -0.00117668 0.99999545 -0.00277632 0.68915318 
    5667 0.00211524 0.00277880 0.99999390 -0.53659035 
    5668 Axis 0.75390301 -0.57457302 -0.31858453 
    5669 Axis point 0.00000000 189.33906889 255.71953578 
    5670 Rotation angle (degrees) 0.21109204 
    5671 Shift along axis 0.03770921 
    5672  
    5673 
    5674 > fitmap #5.4 inMap #1
    5675 
    5676 Fit molecule combination D (#5.4) to map
    5677 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1773
    5678 atoms 
    5679 average map value = 0.3068, steps = 44 
    5680 shifted from previous position = 0.0555 
    5681 rotated from previous position = 0.229 degrees 
    5682 atoms outside contour = 380, contour level = 0.12 
    5683  
    5684 Position of combination D (#5.4) relative to
    5685 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5686 Matrix rotation and translation 
    5687 0.99999579 -0.00101424 -0.00271761 0.67202100 
    5688 0.00100709 0.99999603 -0.00263128 0.38927866 
    5689 0.00272027 0.00262853 0.99999285 -0.59352657 
    5690 Axis 0.67167935 -0.69441969 0.25812428 
    5691 Axis point 221.46120935 0.00000000 240.05585247 
    5692 Rotation angle (degrees) 0.22433736 
    5693 Shift along axis 0.02785624 
    5694  
    5695 
    5696 > fitmap #5.4 inMap #1
    5697 
    5698 Fit molecule combination D (#5.4) to map
    5699 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1773
    5700 atoms 
    5701 average map value = 0.3069, steps = 36 
    5702 shifted from previous position = 0.0354 
    5703 rotated from previous position = 0.0529 degrees 
    5704 atoms outside contour = 377, contour level = 0.12 
    5705  
    5706 Position of combination D (#5.4) relative to
    5707 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5708 Matrix rotation and translation 
    5709 0.99999675 -0.00010724 -0.00254626 0.49326906 
    5710 0.00010065 0.99999665 -0.00258763 0.46725754 
    5711 0.00254653 0.00258737 0.99999341 -0.60181254 
    5712 Axis 0.71245383 -0.70113511 0.02861969 
    5713 Axis point 0.00000000 233.13316373 182.05886415 
    5714 Rotation angle (degrees) 0.20808803 
    5715 Shift along axis 0.00659707 
    5716  
    5717 
    5718 > fitmap #5.4 inMap #1
    5719 
    5720 Fit molecule combination D (#5.4) to map
    5721 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1773
    5722 atoms 
    5723 average map value = 0.3069, steps = 40 
    5724 shifted from previous position = 0.0022 
    5725 rotated from previous position = 0.0213 degrees 
    5726 atoms outside contour = 377, contour level = 0.12 
    5727  
    5728 Position of combination D (#5.4) relative to
    5729 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5730 Matrix rotation and translation 
    5731 0.99999658 -0.00047803 -0.00257061 0.55225173 
    5732 0.00047132 0.99999649 -0.00260848 0.43626956 
    5733 0.00257185 0.00260726 0.99999329 -0.60628149 
    5734 Axis 0.70618361 -0.69626351 0.12853729 
    5735 Axis point 0.00000000 233.38066041 169.15261130 
    5736 Rotation angle (degrees) 0.21158811 
    5737 Shift along axis 0.00830277 
    5738  
    5739 
    5740 > fitmap #5.4 inMap #1
    5741 
    5742 Fit molecule combination D (#5.4) to map
    5743 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1773
    5744 atoms 
    5745 average map value = 0.3068, steps = 36 
    5746 shifted from previous position = 0.0287 
    5747 rotated from previous position = 0.0144 degrees 
    5748 atoms outside contour = 381, contour level = 0.12 
    5749  
    5750 Position of combination D (#5.4) relative to
    5751 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5752 Matrix rotation and translation 
    5753 0.99999651 -0.00072039 -0.00254016 0.59496329 
    5754 0.00071392 0.99999650 -0.00254747 0.39679491 
    5755 0.00254199 0.00254565 0.99999353 -0.57046969 
    5756 Axis 0.69420958 -0.69271390 0.19550067 
    5757 Axis point 0.00000000 226.55531913 162.69226779 
    5758 Rotation angle (degrees) 0.21017772 
    5759 Shift along axis 0.02663666 
    5760  
    5761 
    5762 > fitmap #5.4 inMap #1
    5763 
    5764 Fit molecule combination D (#5.4) to map
    5765 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1773
    5766 atoms 
    5767 average map value = 0.3069, steps = 40 
    5768 shifted from previous position = 0.0368 
    5769 rotated from previous position = 0.0326 degrees 
    5770 atoms outside contour = 377, contour level = 0.12 
    5771  
    5772 Position of combination D (#5.4) relative to
    5773 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5774 Matrix rotation and translation 
    5775 0.99999700 -0.00016638 -0.00244578 0.48715979 
    5776 0.00016039 0.99999698 -0.00245207 0.43344363 
    5777 0.00244618 0.00245167 0.99999400 -0.58303806 
    5778 Axis 0.70716975 -0.70547168 0.04712385 
    5779 Axis point 0.00000000 238.46853282 179.70885922 
    5780 Rotation angle (degrees) 0.19865386 
    5781 Shift along axis 0.01124746 
    5782  
    5783 
    5784 > fitmap #5.5 inMap #1
    5785 
    5786 Fit molecule combination E (#5.5) to map
    5787 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1909
    5788 atoms 
    5789 average map value = 0.3243, steps = 40 
    5790 shifted from previous position = 0.0449 
    5791 rotated from previous position = 0.0444 degrees 
    5792 atoms outside contour = 368, contour level = 0.12 
    5793  
    5794 Position of combination E (#5.5) relative to
    5795 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5796 Matrix rotation and translation 
    5797 0.99999981 0.00030122 -0.00053955 0.03251072 
    5798 -0.00030116 0.99999995 0.00011320 0.04230695 
    5799 0.00053959 -0.00011304 0.99999985 -0.01227929 
    5800 Axis -0.18006346 -0.85890172 -0.47944238 
    5801 Axis point 55.02804945 0.00000000 48.11972921 
    5802 Rotation angle (degrees) 0.03599374 
    5803 Shift along axis -0.03630430 
    5804  
    5805 
    5806 > fitmap #5.5 inMap #1
    5807 
    5808 Fit molecule combination E (#5.5) to map
    5809 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1909
    5810 atoms 
    5811 average map value = 0.3243, steps = 60 
    5812 shifted from previous position = 0.0295 
    5813 rotated from previous position = 0.0394 degrees 
    5814 atoms outside contour = 365, contour level = 0.12 
    5815  
    5816 Position of combination E (#5.5) relative to
    5817 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5818 Matrix rotation and translation 
    5819 0.99999926 0.00031659 -0.00117705 0.12683874 
    5820 -0.00031675 0.99999994 -0.00014282 0.07442856 
    5821 0.00117700 0.00014320 0.99999930 -0.13362543 
    5822 Axis 0.11652864 -0.95908260 -0.25803417 
    5823 Axis point 118.44582641 0.00000000 109.87542125 
    5824 Rotation angle (degrees) 0.07031577 
    5825 Shift along axis -0.02212286 
    5826  
    5827 
    5828 > fitmap #5.5 inMap #1
    5829 
    5830 Fit molecule combination E (#5.5) to map
    5831 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1909
    5832 atoms 
    5833 average map value = 0.3243, steps = 60 
    5834 shifted from previous position = 0.00338 
    5835 rotated from previous position = 0.0127 degrees 
    5836 atoms outside contour = 366, contour level = 0.12 
    5837  
    5838 Position of combination E (#5.5) relative to
    5839 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5840 Matrix rotation and translation 
    5841 0.99999897 0.00042295 -0.00136890 0.14311392 
    5842 -0.00042310 0.99999990 -0.00011260 0.07586381 
    5843 0.00136885 0.00011318 0.99999906 -0.14679386 
    5844 Axis 0.07855095 -0.95246674 -0.29434139 
    5845 Axis point 111.14072601 0.00000000 105.48528312 
    5846 Rotation angle (degrees) 0.08234493 
    5847 Shift along axis -0.01780851 
    5848  
    5849 
    5850 > fitmap #5.5 inMap #1
    5851 
    5852 Fit molecule combination E (#5.5) to map
    5853 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1909
    5854 atoms 
    5855 average map value = 0.3243, steps = 40 
    5856 shifted from previous position = 0.0297 
    5857 rotated from previous position = 0.0348 degrees 
    5858 atoms outside contour = 366, contour level = 0.12 
    5859  
    5860 Position of combination E (#5.5) relative to
    5861 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5862 Matrix rotation and translation 
    5863 0.99999912 0.00084530 -0.00102328 0.02046048 
    5864 -0.00084514 0.99999963 0.00015306 0.09354168 
    5865 0.00102340 -0.00015220 0.99999946 -0.05855206 
    5866 Axis -0.11424507 -0.76596747 -0.63264674 
    5867 Axis point 80.05967188 0.00000000 15.80143615 
    5868 Rotation angle (degrees) 0.07654773 
    5869 Shift along axis -0.03694462 
    5870  
    5871 
    5872 > select add #5.6
    5873 
    5874 32556 atoms, 33159 bonds, 7 pseudobonds, 4268 residues, 23 models selected 
    5875 
    5876 > select subtract #5.5
    5877 
    5878 30647 atoms, 31213 bonds, 7 pseudobonds, 4021 residues, 22 models selected 
    5879 
    5880 > fitmap #5.6 inMap #1
    5881 
    5882 Fit molecule combination F (#5.6) to map
    5883 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
    5884 atoms 
    5885 average map value = 0.3178, steps = 48 
    5886 shifted from previous position = 0.0258 
    5887 rotated from previous position = 0.0743 degrees 
    5888 atoms outside contour = 354, contour level = 0.12 
    5889  
    5890 Position of combination F (#5.6) relative to
    5891 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5892 Matrix rotation and translation 
    5893 0.99999921 0.00008509 0.00125521 -0.16762757 
    5894 -0.00008589 0.99999979 0.00063867 -0.07248961 
    5895 -0.00125516 -0.00063878 0.99999901 0.21094595 
    5896 Axis -0.45269463 0.88960479 -0.06058783 
    5897 Axis point 167.89054094 0.00000000 134.15012567 
    5898 Rotation angle (degrees) 0.08084131 
    5899 Shift along axis -0.00138376 
    5900  
    5901 
    5902 > fitmap #5.6 inMap #1
    5903 
    5904 Fit molecule combination F (#5.6) to map
    5905 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
    5906 atoms 
    5907 average map value = 0.3175, steps = 44 
    5908 shifted from previous position = 0.043 
    5909 rotated from previous position = 0.0503 degrees 
    5910 atoms outside contour = 352, contour level = 0.12 
    5911  
    5912 Position of combination F (#5.6) relative to
    5913 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5914 Matrix rotation and translation 
    5915 0.99999830 0.00075684 0.00168338 -0.33314867 
    5916 -0.00075729 0.99999968 0.00026733 0.08416048 
    5917 -0.00168318 -0.00026860 0.99999855 0.21379988 
    5918 Axis -0.14367805 0.90254293 -0.40592225 
    5919 Axis point 135.78578792 0.00000000 194.88073754 
    5920 Rotation angle (degrees) 0.10685898 
    5921 Shift along axis 0.03703847 
    5922  
    5923 
    5924 > fitmap #5.6 inMap #1
    5925 
    5926 Fit molecule combination F (#5.6) to map
    5927 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
    5928 atoms 
    5929 average map value = 0.3177, steps = 44 
    5930 shifted from previous position = 0.0344 
    5931 rotated from previous position = 0.0552 degrees 
    5932 atoms outside contour = 353, contour level = 0.12 
    5933  
    5934 Position of combination F (#5.6) relative to
    5935 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5936 Matrix rotation and translation 
    5937 0.99999936 0.00085886 0.00073511 -0.20117157 
    5938 -0.00085916 0.99999955 0.00040384 0.05242997 
    5939 -0.00073476 -0.00040447 0.99999965 0.11641295 
    5940 Axis -0.33663476 0.61215541 -0.71550178 
    5941 Axis point 49.13262785 227.79085998 0.00000000 
    5942 Rotation angle (degrees) 0.06878760 
    5943 Shift along axis 0.01652296 
    5944  
    5945 
    5946 > fitmap #5.6 inMap #1
    5947 
    5948 Fit molecule combination F (#5.6) to map
    5949 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
    5950 atoms 
    5951 average map value = 0.3177, steps = 44 
    5952 shifted from previous position = 0.00607 
    5953 rotated from previous position = 0.0219 degrees 
    5954 atoms outside contour = 352, contour level = 0.12 
    5955  
    5956 Position of combination F (#5.6) relative to
    5957 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5958 Matrix rotation and translation 
    5959 0.99999937 0.00058257 0.00095838 -0.19524469 
    5960 -0.00058309 0.99999968 0.00054686 0.00626368 
    5961 -0.00095806 -0.00054742 0.99999939 0.16397935 
    5962 Axis -0.43844958 0.76786935 -0.46705314 
    5963 Axis point 177.77311985 0.00000000 197.51457778 
    5964 Rotation angle (degrees) 0.07149907 
    5965 Shift along axis 0.01382757 
    5966  
    5967 
    5968 > hide #5.7 models
    5969 
    5970 > select add #5.7
    5971 
    5972 32512 atoms, 33111 bonds, 7 pseudobonds, 4267 residues, 23 models selected 
    5973 
    5974 > select subtract #5.6
    5975 
    5976 30665 atoms, 31229 bonds, 7 pseudobonds, 4026 residues, 22 models selected 
    5977 
    5978 > show #5.7 models
    5979 
    5980 > fitmap #5.6 inMap #1
    5981 
    5982 Fit molecule combination F (#5.6) to map
    5983 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
    5984 atoms 
    5985 average map value = 0.3178, steps = 44 
    5986 shifted from previous position = 0.0127 
    5987 rotated from previous position = 0.0241 degrees 
    5988 atoms outside contour = 351, contour level = 0.12 
    5989  
    5990 Position of combination F (#5.6) relative to
    5991 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    5992 Matrix rotation and translation 
    5993 0.99999924 0.00025199 0.00120952 -0.19236483 
    5994 -0.00025257 0.99999985 0.00047684 -0.02857304 
    5995 -0.00120940 -0.00047714 0.99999915 0.17866200 
    5996 Axis -0.36016367 0.91323369 -0.19048978 
    5997 Axis point 149.06036575 0.00000000 156.40974755 
    5998 Rotation angle (degrees) 0.07588100 
    5999 Shift along axis 0.00915568 
    6000  
    6001 
    6002 > fitmap #5.6 inMap #1
    6003 
    6004 Fit molecule combination F (#5.6) to map
    6005 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1847
    6006 atoms 
    6007 average map value = 0.3177, steps = 44 
    6008 shifted from previous position = 0.0242 
    6009 rotated from previous position = 0.0184 degrees 
    6010 atoms outside contour = 354, contour level = 0.12 
    6011  
    6012 Position of combination F (#5.6) relative to
    6013 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6014 Matrix rotation and translation 
    6015 0.99999884 0.00028610 0.00149573 -0.25522564 
    6016 -0.00028660 0.99999990 0.00033352 0.00852715 
    6017 -0.00149564 -0.00033395 0.99999883 0.18678061 
    6018 Axis -0.21407061 0.95939428 -0.18367469 
    6019 Axis point 128.25415062 0.00000000 166.65496552 
    6020 Rotation angle (degrees) 0.08932346 
    6021 Shift along axis 0.02851034 
    6022  
    6023 
    6024 > fitmap #5.7 inMap #1
    6025 
    6026 Fit molecule combination G (#5.7) to map
    6027 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1865
    6028 atoms 
    6029 average map value = 0.3079, steps = 40 
    6030 shifted from previous position = 0.0372 
    6031 rotated from previous position = 0.109 degrees 
    6032 atoms outside contour = 418, contour level = 0.12 
    6033  
    6034 Position of combination G (#5.7) relative to
    6035 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6036 Matrix rotation and translation 
    6037 0.99999857 0.00111817 0.00126845 -0.29201334 
    6038 -0.00111676 0.99999876 -0.00110838 0.29301652 
    6039 -0.00126969 0.00110697 0.99999858 0.05645919 
    6040 Axis 0.54796403 0.62780492 -0.55280774 
    6041 Axis point 41.04942223 0.00000000 227.12009064 
    6042 Rotation angle (degrees) 0.11581983 
    6043 Shift along axis -0.00726667 
    6044  
    6045 
    6046 > fitmap #5.7 inMap #1
    6047 
    6048 Fit molecule combination G (#5.7) to map
    6049 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1865
    6050 atoms 
    6051 average map value = 0.3078, steps = 48 
    6052 shifted from previous position = 0.0133 
    6053 rotated from previous position = 0.0454 degrees 
    6054 atoms outside contour = 418, contour level = 0.12 
    6055  
    6056 Position of combination G (#5.7) relative to
    6057 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6058 Matrix rotation and translation 
    6059 0.99999721 0.00134408 0.00194133 -0.40642310 
    6060 -0.00134125 0.99999803 -0.00146006 0.37257318 
    6061 -0.00194329 0.00145745 0.99999705 0.08940663 
    6062 Axis 0.52558714 0.69981048 -0.48375970 
    6063 Axis point 46.65137815 0.00000000 210.46715975 
    6064 Rotation angle (degrees) 0.15902351 
    6065 Shift along axis 0.00386854 
    6066  
    6067 
    6068 > select add #5.8
    6069 
    6070 31554 atoms, 32133 bonds, 7 pseudobonds, 4137 residues, 23 models selected 
    6071 
    6072 > select subtract #5.7
    6073 
    6074 29689 atoms, 30235 bonds, 7 pseudobonds, 3891 residues, 22 models selected 
    6075 
    6076 > fitmap #5.7 inMap #1
    6077 
    6078 Fit molecule combination G (#5.7) to map
    6079 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1865
    6080 atoms 
    6081 average map value = 0.3077, steps = 44 
    6082 shifted from previous position = 0.0455 
    6083 rotated from previous position = 0.0642 degrees 
    6084 atoms outside contour = 426, contour level = 0.12 
    6085  
    6086 Position of combination G (#5.7) relative to
    6087 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6088 Matrix rotation and translation 
    6089 0.99999783 0.00099386 0.00183210 -0.34934666 
    6090 -0.00099312 0.99999943 -0.00039978 0.16555898 
    6091 -0.00183250 0.00039796 0.99999824 0.23017648 
    6092 Axis 0.18795584 0.86342441 -0.46815692 
    6093 Axis point 117.64301289 -0.00000000 187.69422638 
    6094 Rotation angle (degrees) 0.12158916 
    6095 Shift along axis -0.03047279 
    6096  
    6097 
    6098 > fitmap #5.7 inMap #1
    6099 
    6100 Fit molecule combination G (#5.7) to map
    6101 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1865
    6102 atoms 
    6103 average map value = 0.3077, steps = 48 
    6104 shifted from previous position = 0.021 
    6105 rotated from previous position = 0.0201 degrees 
    6106 atoms outside contour = 426, contour level = 0.12 
    6107  
    6108 Position of combination G (#5.7) relative to
    6109 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6110 Matrix rotation and translation 
    6111 0.99999814 0.00113679 0.00155570 -0.30883772 
    6112 -0.00113592 0.99999920 -0.00056217 0.21460771 
    6113 -0.00155633 0.00056040 0.99999863 0.17426485 
    6114 Axis 0.27968335 0.77534336 -0.56623308 
    6115 Axis point 105.01201182 0.00000000 195.29191178 
    6116 Rotation angle (degrees) 0.11498532 
    6117 Shift along axis -0.01865663 
    6118  
    6119 
    6120 > fitmap #5.8 inMap #1
    6121 
    6122 Fit molecule combination H (#5.8) to map
    6123 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms 
    6124 average map value = 0.2027, steps = 40 
    6125 shifted from previous position = 0.03 
    6126 rotated from previous position = 0.19 degrees 
    6127 atoms outside contour = 353, contour level = 0.12 
    6128  
    6129 Position of combination H (#5.8) relative to
    6130 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6131 Matrix rotation and translation 
    6132 0.99999440 -0.00275694 0.00189722 0.04382613 
    6133 0.00275592 0.99999606 0.00054021 -0.41537653 
    6134 -0.00189870 -0.00053498 0.99999805 0.30954556 
    6135 Axis -0.15860298 0.55994154 0.81321004 
    6136 Axis point 153.22144657 16.28661118 0.00000000 
    6137 Rotation angle (degrees) 0.19420795 
    6138 Shift along axis 0.01218802 
    6139  
    6140 
    6141 > fitmap #5.8 inMap #1
    6142 
    6143 Fit molecule combination H (#5.8) to map
    6144 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms 
    6145 average map value = 0.2027, steps = 44 
    6146 shifted from previous position = 0.0236 
    6147 rotated from previous position = 0.0738 degrees 
    6148 atoms outside contour = 353, contour level = 0.12 
    6149  
    6150 Position of combination H (#5.8) relative to
    6151 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6152 Matrix rotation and translation 
    6153 0.99999284 -0.00300611 0.00229986 0.00578704 
    6154 0.00300211 0.99999398 0.00173846 -0.63111976 
    6155 -0.00230507 -0.00173154 0.99999584 0.49879301 
    6156 Axis -0.41669862 0.55298733 0.72150348 
    6157 Axis point 211.79032217 2.59427673 0.00000000 
    6158 Rotation angle (degrees) 0.23856193 
    6159 Shift along axis 0.00846821 
    6160  
    6161 
    6162 > fitmap #5.8 inMap #1
    6163 
    6164 Fit molecule combination H (#5.8) to map
    6165 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms 
    6166 average map value = 0.2027, steps = 44 
    6167 shifted from previous position = 0.00296 
    6168 rotated from previous position = 0.0212 degrees 
    6169 atoms outside contour = 352, contour level = 0.12 
    6170  
    6171 Position of combination H (#5.8) relative to
    6172 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6173 Matrix rotation and translation 
    6174 0.99999180 -0.00305021 0.00266373 -0.04766558 
    6175 0.00304571 0.99999393 0.00169218 -0.62695795 
    6176 -0.00266887 -0.00168405 0.99999502 0.54025313 
    6177 Axis -0.38476741 0.60772305 0.69471342 
    6178 Axis point 208.34362778 -14.59203511 0.00000000 
    6179 Rotation angle (degrees) 0.25137801 
    6180 Shift along axis 0.01264446 
    6181  
    6182 
    6183 > fitmap #5.8 inMap #1
    6184 
    6185 Fit molecule combination H (#5.8) to map
    6186 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms 
    6187 average map value = 0.2027, steps = 40 
    6188 shifted from previous position = 0.0273 
    6189 rotated from previous position = 0.0629 degrees 
    6190 atoms outside contour = 352, contour level = 0.12 
    6191  
    6192 Position of combination H (#5.8) relative to
    6193 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6194 Matrix rotation and translation 
    6195 0.99999426 -0.00263806 0.00212706 0.00609837 
    6196 0.00263631 0.99999618 0.00082622 -0.43129337 
    6197 -0.00212924 -0.00082060 0.99999740 0.38125234 
    6198 Axis -0.23611174 0.61024417 0.75620983 
    6199 Axis point 169.08289667 4.06240884 0.00000000 
    6200 Rotation angle (degrees) 0.19981220 
    6201 Shift along axis 0.02367260 
    6202  
    6203 
    6204 > fitmap #5.8 inMap #1
    6205 
    6206 Fit molecule combination H (#5.8) to map
    6207 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms 
    6208 average map value = 0.2026, steps = 44 
    6209 shifted from previous position = 0.0368 
    6210 rotated from previous position = 0.0686 degrees 
    6211 atoms outside contour = 353, contour level = 0.12 
    6212  
    6213 Position of combination H (#5.8) relative to
    6214 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6215 Matrix rotation and translation 
    6216 0.99999182 -0.00306291 0.00264073 -0.04701339 
    6217 0.00305810 0.99999366 0.00182195 -0.64951378 
    6218 -0.00264629 -0.00181386 0.99999485 0.54552389 
    6219 Axis -0.41000057 0.59620149 0.69024873 
    6220 Axis point 214.03359243 -14.77196932 0.00000000 
    6221 Rotation angle (degrees) 0.25404550 
    6222 Shift along axis 0.00858160 
    6223  
    6224 
    6225 > fitmap #5.8 inMap #1
    6226 
    6227 Fit molecule combination H (#5.8) to map
    6228 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms 
    6229 average map value = 0.2027, steps = 40 
    6230 shifted from previous position = 0.0311 
    6231 rotated from previous position = 0.0683 degrees 
    6232 atoms outside contour = 352, contour level = 0.12 
    6233  
    6234 Position of combination H (#5.8) relative to
    6235 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6236 Matrix rotation and translation 
    6237 0.99999418 -0.00269849 0.00208750 0.01434101 
    6238 0.00269676 0.99999602 0.00082952 -0.44229254 
    6239 -0.00208973 -0.00082389 0.99999748 0.37299289 
    6240 Axis -0.23550037 0.59497929 0.76846550 
    6241 Axis point 168.45313101 6.70530163 0.00000000 
    6242 Rotation angle (degrees) 0.20113195 
    6243 Shift along axis 0.02009995 
    6244  
    6245 
    6246 > fitmap #5.8 inMap #1
    6247 
    6248 Fit molecule combination H (#5.8) to map
    6249 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms 
    6250 average map value = 0.2027, steps = 44 
    6251 shifted from previous position = 0.0132 
    6252 rotated from previous position = 0.00682 degrees 
    6253 atoms outside contour = 352, contour level = 0.12 
    6254  
    6255 Position of combination H (#5.8) relative to
    6256 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6257 Matrix rotation and translation 
    6258 0.99999443 -0.00261188 0.00207931 0.01310919 
    6259 0.00261032 0.99999631 0.00074822 -0.41864656 
    6260 -0.00208126 -0.00074278 0.99999756 0.37169683 
    6261 Axis -0.21793788 0.60814563 0.76332298 
    6262 Axis point 166.51097364 6.85577371 0.00000000 
    6263 Rotation angle (degrees) 0.19599210 
    6264 Shift along axis 0.02626967 
    6265  
    6266 
    6267 > fitmap #5.8 inMap #1
    6268 
    6269 Fit molecule combination H (#5.8) to map
    6270 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 889 atoms 
    6271 average map value = 0.2026, steps = 44 
    6272 shifted from previous position = 0.0426 
    6273 rotated from previous position = 0.0682 degrees 
    6274 atoms outside contour = 351, contour level = 0.12 
    6275  
    6276 Position of combination H (#5.8) relative to
    6277 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6278 Matrix rotation and translation 
    6279 0.99999420 -0.00270177 0.00207359 0.00837488 
    6280 0.00269776 0.99999449 0.00193617 -0.61510474 
    6281 -0.00207881 -0.00193057 0.99999598 0.48503672 
    6282 Axis -0.49367475 0.53014517 0.68937025 
    6283 Axis point 228.82633525 3.36514922 0.00000000 
    6284 Rotation angle (degrees) 0.22438686 
    6285 Shift along axis 0.00414061 
    6286  
    6287 
    6288 > select add #5.9
    6289 
    6290 31729 atoms, 32318 bonds, 10 pseudobonds, 4159 residues, 24 models selected 
    6291 
    6292 > select subtract #5.8
    6293 
    6294 30840 atoms, 31414 bonds, 10 pseudobonds, 4048 residues, 23 models selected 
    6295 
    6296 > fitmap #5.9 inMap #1
    6297 
    6298 Fit molecule combination I (#5.9) to map
    6299 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 2040
    6300 atoms 
    6301 average map value = 0.1315, steps = 44 
    6302 shifted from previous position = 0.0687 
    6303 rotated from previous position = 0.049 degrees 
    6304 atoms outside contour = 1094, contour level = 0.12 
    6305  
    6306 Position of combination I (#5.9) relative to
    6307 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6308 Matrix rotation and translation 
    6309 0.99999961 -0.00084012 0.00026067 0.05161513 
    6310 0.00084009 0.99999964 0.00009195 -0.01926858 
    6311 -0.00026075 -0.00009173 0.99999996 0.08863745 
    6312 Axis -0.10384751 0.29477993 0.94990552 
    6313 Axis point 48.63618997 70.45852495 0.00000000 
    6314 Rotation angle (degrees) 0.05067299 
    6315 Shift along axis 0.07315711 
    6316  
    6317 
    6318 > fitmap #5.9 inMap #1
    6319 
    6320 Fit molecule combination I (#5.9) to map
    6321 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 2040
    6322 atoms 
    6323 average map value = 0.1316, steps = 44 
    6324 shifted from previous position = 0.0315 
    6325 rotated from previous position = 0.0352 degrees 
    6326 atoms outside contour = 1092, contour level = 0.12 
    6327  
    6328 Position of combination I (#5.9) relative to
    6329 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6330 Matrix rotation and translation 
    6331 0.99999920 -0.00113650 0.00056357 0.02394769 
    6332 0.00113670 0.99999929 -0.00035390 0.01892679 
    6333 -0.00056316 0.00035454 0.99999978 0.03394522 
    6334 Axis 0.26894495 0.42773579 0.86296622 
    6335 Axis point -0.15097385 10.69949916 0.00000000 
    6336 Rotation angle (degrees) 0.07546349 
    6337 Shift along axis 0.04382986 
    6338  
    6339 
    6340 > fitmap #5.9 inMap #1
    6341 
    6342 Fit molecule combination I (#5.9) to map
    6343 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 2040
    6344 atoms 
    6345 average map value = 0.1316, steps = 40 
    6346 shifted from previous position = 0.0119 
    6347 rotated from previous position = 0.0308 degrees 
    6348 atoms outside contour = 1092, contour level = 0.12 
    6349  
    6350 Position of combination I (#5.9) relative to
    6351 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6352 Matrix rotation and translation 
    6353 0.99999963 -0.00082526 0.00024786 0.04874493 
    6354 0.00082527 0.99999966 -0.00004983 -0.00656040 
    6355 -0.00024782 0.00005004 0.99999997 0.05611431 
    6356 Axis 0.05785578 0.28714742 0.95613758 
    6357 Axis point 26.96627744 55.22708835 0.00000000 
    6358 Rotation angle (degrees) 0.04945332 
    6359 Shift along axis 0.05458937 
    6360  
    6361 
    6362 > fitmap #5.10 inMap #1
    6363 
    6364 Fit molecule combination J (#5.10) to map
    6365 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
    6366 atoms 
    6367 average map value = 0.1493, steps = 36 
    6368 shifted from previous position = 0.0393 
    6369 rotated from previous position = 0.134 degrees 
    6370 atoms outside contour = 923, contour level = 0.12 
    6371  
    6372 Position of combination J (#5.10) relative to
    6373 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6374 Matrix rotation and translation 
    6375 0.99999819 0.00166154 -0.00092908 -0.00713277 
    6376 -0.00166274 0.99999778 -0.00129115 0.34406202 
    6377 0.00092693 0.00129270 0.99999873 -0.18693657 
    6378 Axis 0.56154909 -0.40336590 -0.72246700 
    6379 Axis point 205.04636424 1.90303381 0.00000000 
    6380 Rotation angle (degrees) 0.13181735 
    6381 Shift along axis -0.00773279 
    6382  
    6383 
    6384 > fitmap #5.10 inMap #1
    6385 
    6386 Fit molecule combination J (#5.10) to map
    6387 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
    6388 atoms 
    6389 average map value = 0.1493, steps = 40 
    6390 shifted from previous position = 0.0217 
    6391 rotated from previous position = 0.019 degrees 
    6392 atoms outside contour = 922, contour level = 0.12 
    6393  
    6394 Position of combination J (#5.10) relative to
    6395 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6396 Matrix rotation and translation 
    6397 0.99999835 0.00154939 -0.00094847 0.01674358 
    6398 -0.00155091 0.99999751 -0.00160268 0.40239959 
    6399 0.00094599 0.00160414 0.99999827 -0.22659577 
    6400 Axis 0.66173441 -0.39092621 -0.63975329 
    6401 Axis point 0.00000000 142.03118803 250.55130864 
    6402 Rotation angle (degrees) 0.13883018 
    6403 Shift along axis -0.00126335 
    6404  
    6405 
    6406 > fitmap #5.10 inMap #1
    6407 
    6408 Fit molecule combination J (#5.10) to map
    6409 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
    6410 atoms 
    6411 average map value = 0.1493, steps = 36 
    6412 shifted from previous position = 0.012 
    6413 rotated from previous position = 0.0286 degrees 
    6414 atoms outside contour = 925, contour level = 0.12 
    6415  
    6416 Position of combination J (#5.10) relative to
    6417 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6418 Matrix rotation and translation 
    6419 0.99999903 0.00105214 -0.00091433 0.06974202 
    6420 -0.00105363 0.99999813 -0.00162097 0.36514233 
    6421 0.00091262 0.00162194 0.99999827 -0.22888569 
    6422 Axis 0.75830821 -0.42720802 -0.49240428 
    6423 Axis point 0.00000000 138.44792888 227.63123464 
    6424 Rotation angle (degrees) 0.12251292 
    6425 Shift along axis 0.00959851 
    6426  
    6427 
    6428 > fitmap #5.10 inMap #1
    6429 
    6430 Fit molecule combination J (#5.10) to map
    6431 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
    6432 atoms 
    6433 average map value = 0.1493, steps = 36 
    6434 shifted from previous position = 0.0277 
    6435 rotated from previous position = 0.0291 degrees 
    6436 atoms outside contour = 923, contour level = 0.12 
    6437  
    6438 Position of combination J (#5.10) relative to
    6439 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6440 Matrix rotation and translation 
    6441 0.99999839 0.00153641 -0.00092896 0.00243568 
    6442 -0.00153777 0.99999774 -0.00146641 0.36826985 
    6443 0.00092671 0.00146784 0.99999849 -0.20713456 
    6444 Axis 0.63275974 -0.40016827 -0.66293323 
    6445 Axis point 237.27523914 -4.84214511 -0.00000000 
    6446 Rotation angle (degrees) 0.13284707 
    6447 Shift along axis -0.00851232 
    6448  
    6449 
    6450 > fitmap #5.10 inMap #1
    6451 
    6452 Fit molecule combination J (#5.10) to map
    6453 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
    6454 atoms 
    6455 average map value = 0.1493, steps = 40 
    6456 shifted from previous position = 0.0234 
    6457 rotated from previous position = 0.0281 degrees 
    6458 atoms outside contour = 924, contour level = 0.12 
    6459  
    6460 Position of combination J (#5.10) relative to
    6461 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6462 Matrix rotation and translation 
    6463 0.99999903 0.00105566 -0.00090429 0.06559302 
    6464 -0.00105707 0.99999822 -0.00156020 0.34868223 
    6465 0.00090264 0.00156116 0.99999837 -0.22169675 
    6466 Axis 0.74675711 -0.43229043 -0.50544911 
    6467 Axis point 0.00000000 138.90664101 226.18273666 
    6468 Rotation angle (degrees) 0.11974502 
    6469 Shift along axis 0.01030649 
    6470  
    6471 
    6472 > fitmap #5.10 inMap #1
    6473 
    6474 Fit molecule combination J (#5.10) to map
    6475 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
    6476 atoms 
    6477 average map value = 0.1493, steps = 44 
    6478 shifted from previous position = 0.0143 
    6479 rotated from previous position = 0.0352 degrees 
    6480 atoms outside contour = 921, contour level = 0.12 
    6481  
    6482 Position of combination J (#5.10) relative to
    6483 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6484 Matrix rotation and translation 
    6485 0.99999816 0.00147229 -0.00122574 0.08530676 
    6486 -0.00147459 0.99999715 -0.00187657 0.44579723 
    6487 0.00122298 0.00187837 0.99999749 -0.27889891 
    6488 Axis 0.69993596 -0.45645173 -0.54931000 
    6489 Axis point 0.00000000 146.04309260 239.63137413 
    6490 Rotation angle (degrees) 0.15368705 
    6491 Shift along axis 0.00942632 
    6492  
    6493 
    6494 > fitmap #5.10 inMap #1
    6495 
    6496 Fit molecule combination J (#5.10) to map
    6497 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1883
    6498 atoms 
    6499 average map value = 0.1493, steps = 44 
    6500 shifted from previous position = 0.00747 
    6501 rotated from previous position = 0.0507 degrees 
    6502 atoms outside contour = 924, contour level = 0.12 
    6503  
    6504 Position of combination J (#5.10) relative to
    6505 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6506 Matrix rotation and translation 
    6507 0.99999939 0.00081745 -0.00074209 0.07007152 
    6508 -0.00081859 0.99999850 -0.00152896 0.33138974 
    6509 0.00074084 0.00152956 0.99999856 -0.20189867 
    6510 Axis 0.81078383 -0.39310889 -0.43369918 
    6511 Axis point 0.00000000 128.20656559 220.24269964 
    6512 Rotation angle (degrees) 0.10806842 
    6513 Shift along axis 0.01410389 
    6514  
    6515 
    6516 > select subtract #5.9
    6517 
    6518 28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected 
    6519 
    6520 > select add #5.11
    6521 
    6522 30675 atoms, 31237 bonds, 8 pseudobonds, 4031 residues, 23 models selected 
    6523 
    6524 > fitmap #5.11 inMap #1
    6525 
    6526 Fit molecule combination K (#5.11) to map
    6527 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1875
    6528 atoms 
    6529 average map value = 0.3238, steps = 28 
    6530 shifted from previous position = 0.0453 
    6531 rotated from previous position = 0.123 degrees 
    6532 atoms outside contour = 367, contour level = 0.12 
    6533  
    6534 Position of combination K (#5.11) relative to
    6535 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6536 Matrix rotation and translation 
    6537 0.99999748 -0.00152833 0.00164337 -0.01008541 
    6538 0.00152881 0.99999879 -0.00029428 -0.19152746 
    6539 -0.00164292 0.00029680 0.99999861 0.20115230 
    6540 Axis 0.13056325 0.72590554 0.67528837 
    6541 Axis point 124.28514747 0.00000000 5.96900842 
    6542 Rotation angle (degrees) 0.12969387 
    6543 Shift along axis -0.00451182 
    6544  
    6545 
    6546 > fitmap #5.11 inMap #1
    6547 
    6548 Fit molecule combination K (#5.11) to map
    6549 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1875
    6550 atoms 
    6551 average map value = 0.3238, steps = 40 
    6552 shifted from previous position = 0.00321 
    6553 rotated from previous position = 0.00947 degrees 
    6554 atoms outside contour = 367, contour level = 0.12 
    6555  
    6556 Position of combination K (#5.11) relative to
    6557 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6558 Matrix rotation and translation 
    6559 0.99999774 -0.00137079 0.00162472 -0.02806499 
    6560 0.00137120 0.99999903 -0.00024820 -0.17490401 
    6561 -0.00162438 0.00025043 0.99999865 0.20537031 
    6562 Axis 0.11648616 0.75902399 0.64055723 
    6563 Axis point 128.18019069 0.00000000 17.13122081 
    6564 Rotation angle (degrees) 0.12263099 
    6565 Shift along axis -0.00447408 
    6566  
    6567 
    6568 > fitmap #5.11 inMap #1
    6569 
    6570 Fit molecule combination K (#5.11) to map
    6571 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1875
    6572 atoms 
    6573 average map value = 0.3239, steps = 40 
    6574 shifted from previous position = 0.0209 
    6575 rotated from previous position = 0.0226 degrees 
    6576 atoms outside contour = 370, contour level = 0.12 
    6577  
    6578 Position of combination K (#5.11) relative to
    6579 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6580 Matrix rotation and translation 
    6581 0.99999799 -0.00140987 0.00142893 0.01172865 
    6582 0.00141072 0.99999883 -0.00058874 -0.13906194 
    6583 -0.00142809 0.00059076 0.99999881 0.14877759 
    6584 Axis 0.28187764 0.68277302 0.67406676 
    6585 Axis point 100.10427196 0.00000000 -6.36164152 
    6586 Rotation angle (degrees) 0.11987536 
    6587 Shift along axis 0.00864433 
    6588  
    6589 
    6590 > fitmap #5.11 inMap #1
    6591 
    6592 Fit molecule combination K (#5.11) to map
    6593 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1875
    6594 atoms 
    6595 average map value = 0.3238, steps = 40 
    6596 shifted from previous position = 0.0268 
    6597 rotated from previous position = 0.0264 degrees 
    6598 atoms outside contour = 368, contour level = 0.12 
    6599  
    6600 Position of combination K (#5.11) relative to
    6601 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6602 Matrix rotation and translation 
    6603 0.99999770 -0.00138027 0.00164108 -0.03140531 
    6604 0.00138057 0.99999903 -0.00018156 -0.18405076 
    6605 -0.00164082 0.00018383 0.99999864 0.21127569 
    6606 Axis 0.08489115 0.76247796 0.64142097 
    6607 Axis point 131.67182525 0.00000000 18.93435366 
    6608 Rotation angle (degrees) 0.12330794 
    6609 Shift along axis -0.00748403 
    6610  
    6611 
    6612 > fitmap #5.12 inMap #1
    6613 
    6614 Fit molecule combination L (#5.12) to map
    6615 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1591
    6616 atoms 
    6617 average map value = 0.3602, steps = 44 
    6618 shifted from previous position = 0.0353 
    6619 rotated from previous position = 0.213 degrees 
    6620 atoms outside contour = 249, contour level = 0.12 
    6621  
    6622 Position of combination L (#5.12) relative to
    6623 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6624 Matrix rotation and translation 
    6625 0.99999687 0.00250035 0.00010264 -0.28183793 
    6626 -0.00250062 0.99999324 0.00269515 -0.06305584 
    6627 -0.00009590 -0.00269540 0.99999636 0.36821761 
    6628 Axis -0.73283387 0.02699156 -0.67987203 
    6629 Axis point 0.00000000 125.10099524 23.25403728 
    6630 Rotation angle (degrees) 0.21072752 
    6631 Shift along axis -0.04550245 
    6632  
    6633 
    6634 > fitmap #5.12 inMap #1
    6635 
    6636 Fit molecule combination L (#5.12) to map
    6637 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1591
    6638 atoms 
    6639 average map value = 0.3595, steps = 28 
    6640 shifted from previous position = 0.0508 
    6641 rotated from previous position = 0.076 degrees 
    6642 atoms outside contour = 246, contour level = 0.12 
    6643  
    6644 Position of combination L (#5.12) relative to
    6645 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6646 Matrix rotation and translation 
    6647 0.99999913 0.00130576 -0.00016553 -0.04703377 
    6648 -0.00130523 0.99999400 0.00320756 -0.33473859 
    6649 0.00016971 -0.00320734 0.99999484 0.37418109 
    6650 Axis -0.92513453 -0.04834680 -0.37654838 
    6651 Axis point 0.00000000 106.96072544 105.78320749 
    6652 Rotation angle (degrees) 0.19864529 
    6653 Shift along axis -0.08120117 
    6654  
    6655 
    6656 > fitmap #5.12 inMap #1
    6657 
    6658 Fit molecule combination L (#5.12) to map
    6659 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1591
    6660 atoms 
    6661 average map value = 0.3601, steps = 44 
    6662 shifted from previous position = 0.0456 
    6663 rotated from previous position = 0.0689 degrees 
    6664 atoms outside contour = 248, contour level = 0.12 
    6665  
    6666 Position of combination L (#5.12) relative to
    6667 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6668 Matrix rotation and translation 
    6669 0.99999715 0.00238710 0.00008144 -0.25981759 
    6670 -0.00238731 0.99999338 0.00274487 -0.08927229 
    6671 -0.00007489 -0.00274506 0.99999623 0.36934257 
    6672 Axis -0.75439329 0.02148240 -0.65607109 
    6673 Axis point 0.00000000 122.97710941 32.44231473 
    6674 Rotation angle (degrees) 0.20847903 
    6675 Shift along axis -0.04822812 
    6676  
    6677 
    6678 > fitmap #5.12 inMap #1
    6679 
    6680 Fit molecule combination L (#5.12) to map
    6681 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1591
    6682 atoms 
    6683 average map value = 0.3597, steps = 28 
    6684 shifted from previous position = 0.0365 
    6685 rotated from previous position = 0.00451 degrees 
    6686 atoms outside contour = 246, contour level = 0.12 
    6687  
    6688 Position of combination L (#5.12) relative to
    6689 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6690 Matrix rotation and translation 
    6691 0.99999719 0.00236736 0.00010714 -0.23491782 
    6692 -0.00236765 0.99999323 0.00281670 -0.08235789 
    6693 -0.00010047 -0.00281694 0.99999603 0.38869340 
    6694 Axis -0.76521655 0.02820002 -0.64315502 
    6695 Axis point 0.00000000 121.37913964 28.80453364 
    6696 Rotation angle (degrees) 0.21091071 
    6697 Shift along axis -0.07254960 
    6698  
    6699 
    6700 > select subtract #5.11
    6701 
    6702 28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected 
    6703 
    6704 > select add #5.13
    6705 
    6706 30368 atoms, 30932 bonds, 7 pseudobonds, 3977 residues, 22 models selected 
    6707 
    6708 > fitmap #5.13 inMap #1
    6709 
    6710 Fit molecule combination M (#5.13) to map
    6711 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1568
    6712 atoms 
    6713 average map value = 0.3566, steps = 40 
    6714 shifted from previous position = 0.0533 
    6715 rotated from previous position = 0.0795 degrees 
    6716 atoms outside contour = 240, contour level = 0.12 
    6717  
    6718 Position of combination M (#5.13) relative to
    6719 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6720 Matrix rotation and translation 
    6721 0.99999988 -0.00028641 0.00039926 -0.05095853 
    6722 0.00028696 0.99999901 -0.00137882 0.24592661 
    6723 -0.00039887 0.00137893 0.99999897 -0.10924343 
    6724 Axis 0.94197644 0.27262240 0.19585051 
    6725 Axis point 0.00000000 79.02286280 178.76901811 
    6726 Rotation angle (degrees) 0.08387004 
    6727 Shift along axis -0.00235201 
    6728  
    6729 
    6730 > fitmap #5.13 inMap #1
    6731 
    6732 Fit molecule combination M (#5.13) to map
    6733 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1568
    6734 atoms 
    6735 average map value = 0.3564, steps = 44 
    6736 shifted from previous position = 0.0343 
    6737 rotated from previous position = 0.0313 degrees 
    6738 atoms outside contour = 244, contour level = 0.12 
    6739  
    6740 Position of combination M (#5.13) relative to
    6741 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6742 Matrix rotation and translation 
    6743 0.99999954 -0.00069240 0.00066856 -0.06555419 
    6744 0.00069315 0.99999912 -0.00113130 0.15249805 
    6745 -0.00066778 0.00113176 0.99999914 -0.01044014 
    6746 Axis 0.76171091 0.44978892 0.46635439 
    6747 Axis point -0.00000000 15.00551215 129.30442704 
    6748 Rotation angle (degrees) 0.08511380 
    6749 Shift along axis 0.01378978 
    6750  
    6751 
    6752 > fitmap #5.13 inMap #1
    6753 
    6754 Fit molecule combination M (#5.13) to map
    6755 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1568
    6756 atoms 
    6757 average map value = 0.3564, steps = 40 
    6758 shifted from previous position = 0.00978 
    6759 rotated from previous position = 0.0757 degrees 
    6760 atoms outside contour = 241, contour level = 0.12 
    6761  
    6762 Position of combination M (#5.13) relative to
    6763 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6764 Matrix rotation and translation 
    6765 0.99999998 0.00010166 0.00014603 -0.06274524 
    6766 -0.00010136 0.99999789 -0.00204999 0.45859912 
    6767 -0.00014624 0.00204997 0.99999789 -0.22339911 
    6768 Axis 0.99625436 0.07101873 -0.04933136 
    6769 Axis point 0.00000000 109.66288383 224.25087995 
    6770 Rotation angle (degrees) 0.11789697 
    6771 Shift along axis -0.01892051 
    6772  
    6773 
    6774 > fitmap #5.13 inMap #1
    6775 
    6776 Fit molecule combination M (#5.13) to map
    6777 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1568
    6778 atoms 
    6779 average map value = 0.3566, steps = 40 
    6780 shifted from previous position = 0.0232 
    6781 rotated from previous position = 0.0632 degrees 
    6782 atoms outside contour = 240, contour level = 0.12 
    6783  
    6784 Position of combination M (#5.13) relative to
    6785 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6786 Matrix rotation and translation 
    6787 0.99999980 -0.00042208 0.00046582 -0.04647305 
    6788 0.00042261 0.99999927 -0.00113340 0.17580375 
    6789 -0.00046534 0.00113360 0.99999925 -0.06468881 
    6790 Axis 0.87452453 0.35920417 0.32585152 
    6791 Axis point 0.00000000 57.57817649 154.62186356 
    6792 Rotation angle (degrees) 0.07426286 
    6793 Shift along axis 0.00142866 
    6794  
    6795 
    6796 > select add #5.14
    6797 
    6798 31917 atoms, 32512 bonds, 7 pseudobonds, 4177 residues, 23 models selected 
    6799 
    6800 > select subtract #5.13
    6801 
    6802 30349 atoms, 30911 bonds, 7 pseudobonds, 3980 residues, 22 models selected 
    6803 
    6804 > fitmap #5.14 inMap #1
    6805 
    6806 Fit molecule combination N (#5.14) to map
    6807 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1549
    6808 atoms 
    6809 average map value = 0.3527, steps = 36 
    6810 shifted from previous position = 0.0221 
    6811 rotated from previous position = 0.0564 degrees 
    6812 atoms outside contour = 239, contour level = 0.12 
    6813  
    6814 Position of combination N (#5.14) relative to
    6815 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6816 Matrix rotation and translation 
    6817 0.99999963 -0.00062065 -0.00059564 0.28083927 
    6818 0.00062053 0.99999979 -0.00019455 -0.02880770 
    6819 0.00059576 0.00019418 0.99999980 -0.10806917 
    6820 Axis 0.22038930 -0.67546335 0.70368872 
    6821 Axis point 40.80251932 450.58438382 -0.00000000 
    6822 Rotation angle (degrees) 0.05052984 
    6823 Shift along axis 0.00530546 
    6824  
    6825 
    6826 > fitmap #5.14 inMap #1
    6827 
    6828 Fit molecule combination N (#5.14) to map
    6829 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1549
    6830 atoms 
    6831 average map value = 0.3527, steps = 44 
    6832 shifted from previous position = 0.00511 
    6833 rotated from previous position = 0.00656 degrees 
    6834 atoms outside contour = 240, contour level = 0.12 
    6835  
    6836 Position of combination N (#5.14) relative to
    6837 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6838 Matrix rotation and translation 
    6839 0.99999963 -0.00054927 -0.00066856 0.28715744 
    6840 0.00054911 0.99999982 -0.00024659 -0.01190953 
    6841 0.00066869 0.00024622 0.99999975 -0.12342747 
    6842 Axis 0.27388844 -0.74319717 0.61044499 
    6843 Axis point 195.83786737 0.00000000 424.43043774 
    6844 Rotation angle (degrees) 0.05154658 
    6845 Shift along axis 0.01215455 
    6846  
    6847 
    6848 > fitmap #5.14 inMap #1
    6849 
    6850 Fit molecule combination N (#5.14) to map
    6851 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1549
    6852 atoms 
    6853 average map value = 0.353, steps = 44 
    6854 shifted from previous position = 0.0391 
    6855 rotated from previous position = 0.0304 degrees 
    6856 atoms outside contour = 237, contour level = 0.12 
    6857  
    6858 Position of combination N (#5.14) relative to
    6859 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6860 Matrix rotation and translation 
    6861 0.99999949 -0.00015855 -0.00099735 0.26188873 
    6862 0.00015845 0.99999998 -0.00010018 0.02528157 
    6863 0.00099737 0.00010002 0.99999950 -0.16463257 
    6864 Axis 0.09864097 -0.98279005 0.15618473 
    6865 Axis point 161.32791818 0.00000000 264.94632757 
    6866 Rotation angle (degrees) 0.05814537 
    6867 Shift along axis -0.02472661 
    6868  
    6869 
    6870 > select add #5.15
    6871 
    6872 31992 atoms, 32584 bonds, 7 pseudobonds, 4192 residues, 23 models selected 
    6873 
    6874 > select subtract #5.14
    6875 
    6876 30443 atoms, 31004 bonds, 7 pseudobonds, 3992 residues, 22 models selected 
    6877 
    6878 > fitmap #5.15 inMap #1
    6879 
    6880 Fit molecule combination O (#5.15) to map
    6881 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1643
    6882 atoms 
    6883 average map value = 0.3446, steps = 44 
    6884 shifted from previous position = 0.00819 
    6885 rotated from previous position = 0.0709 degrees 
    6886 atoms outside contour = 276, contour level = 0.12 
    6887  
    6888 Position of combination O (#5.15) relative to
    6889 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6890 Matrix rotation and translation 
    6891 0.99999941 0.00069383 -0.00084011 0.05801410 
    6892 -0.00069367 0.99999974 0.00019410 0.06402063 
    6893 0.00084024 -0.00019351 0.99999963 -0.06057621 
    6894 Axis -0.17512365 -0.75918509 -0.62687296 
    6895 Axis point 87.63259557 0.00000000 64.65991641 
    6896 Rotation angle (degrees) 0.06340815 
    6897 Shift along axis -0.02078955 
    6898  
    6899 
    6900 > fitmap #5.15 inMap #1
    6901 
    6902 Fit molecule combination O (#5.15) to map
    6903 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1643
    6904 atoms 
    6905 average map value = 0.3447, steps = 44 
    6906 shifted from previous position = 0.00831 
    6907 rotated from previous position = 0.0116 degrees 
    6908 atoms outside contour = 276, contour level = 0.12 
    6909  
    6910 Position of combination O (#5.15) relative to
    6911 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6912 Matrix rotation and translation 
    6913 0.99999955 0.00053427 -0.00077944 0.07109588 
    6914 -0.00053420 0.99999985 0.00008389 0.05712097 
    6915 0.00077949 -0.00008348 0.99999969 -0.07383059 
    6916 Axis -0.08821310 -0.82163809 -0.56314234 
    6917 Axis point 103.15240509 0.00000000 89.83875823 
    6918 Rotation angle (degrees) 0.05435490 
    6919 Shift along axis -0.01162722 
    6920  
    6921 
    6922 > fitmap #5.15 inMap #1
    6923 
    6924 Fit molecule combination O (#5.15) to map
    6925 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1643
    6926 atoms 
    6927 average map value = 0.3445, steps = 40 
    6928 shifted from previous position = 0.0332 
    6929 rotated from previous position = 0.0275 degrees 
    6930 atoms outside contour = 276, contour level = 0.12 
    6931  
    6932 Position of combination O (#5.15) relative to
    6933 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6934 Matrix rotation and translation 
    6935 0.99999938 0.00030380 -0.00107167 0.15165450 
    6936 -0.00030338 0.99999988 0.00038671 -0.01129547 
    6937 0.00107179 -0.00038638 0.99999935 -0.08415800 
    6938 Axis -0.32783924 -0.90896845 -0.25748358 
    6939 Axis point 82.87528448 0.00000000 136.02446357 
    6940 Rotation angle (degrees) 0.06755528 
    6941 Shift along axis -0.01778177 
    6942  
    6943 
    6944 > fitmap #5.15 inMap #1
    6945 
    6946 Fit molecule combination O (#5.15) to map
    6947 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1643
    6948 atoms 
    6949 average map value = 0.3444, steps = 44 
    6950 shifted from previous position = 0.00823 
    6951 rotated from previous position = 0.0172 degrees 
    6952 atoms outside contour = 276, contour level = 0.12 
    6953  
    6954 Position of combination O (#5.15) relative to
    6955 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6956 Matrix rotation and translation 
    6957 0.99999932 0.00026762 -0.00113506 0.16379104 
    6958 -0.00026685 0.99999973 0.00067749 -0.06660641 
    6959 0.00113524 -0.00067718 0.99999913 -0.04656856 
    6960 Axis -0.50224543 -0.84171470 -0.19815623 
    6961 Axis point 44.08870541 0.00000000 136.76597378 
    6962 Rotation angle (degrees) 0.07726979 
    6963 Shift along axis -0.01697186 
    6964  
    6965 
    6966 > fitmap #5.15 inMap #1
    6967 
    6968 Fit molecule combination O (#5.15) to map
    6969 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1643
    6970 atoms 
    6971 average map value = 0.3446, steps = 40 
    6972 shifted from previous position = 0.0275 
    6973 rotated from previous position = 0.0521 degrees 
    6974 atoms outside contour = 278, contour level = 0.12 
    6975  
    6976 Position of combination O (#5.15) relative to
    6977 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    6978 Matrix rotation and translation 
    6979 0.99999940 -0.00015748 -0.00108386 0.24506924 
    6980 0.00015735 0.99999998 -0.00012525 0.01471248 
    6981 0.00108388 0.00012508 0.99999940 -0.16060208 
    6982 Axis 0.11353922 -0.98321782 0.14279905 
    6983 Axis point 147.03700734 0.00000000 227.03005343 
    6984 Rotation angle (degrees) 0.06316099 
    6985 Shift along axis -0.00957443 
    6986  
    6987 
    6988 > fitmap #5.16 inMap #1
    6989 
    6990 Fit molecule combination P (#5.16) to map
    6991 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1623
    6992 atoms 
    6993 average map value = 0.3541, steps = 28 
    6994 shifted from previous position = 0.0553 
    6995 rotated from previous position = 0.22 degrees 
    6996 atoms outside contour = 245, contour level = 0.12 
    6997  
    6998 Position of combination P (#5.16) relative to
    6999 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    7000 Matrix rotation and translation 
    7001 0.99999412 -0.00176197 -0.00294228 0.70976592 
    7002 0.00176604 0.99999749 0.00137884 -0.42550079 
    7003 0.00293984 -0.00138402 0.99999472 -0.10487320 
    7004 Axis -0.37363421 -0.79546522 0.47710855 
    7005 Axis point 39.88344742 0.00000000 244.10192655 
    7006 Rotation angle (degrees) 0.21183910 
    7007 Shift along axis 0.02324236 
    7008  
    7009 
    7010 > fitmap #5.16 inMap #1
    7011 
    7012 Fit molecule combination P (#5.16) to map
    7013 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1623
    7014 atoms 
    7015 average map value = 0.3542, steps = 44 
    7016 shifted from previous position = 0.043 
    7017 rotated from previous position = 0.0795 degrees 
    7018 atoms outside contour = 243, contour level = 0.12 
    7019  
    7020 Position of combination P (#5.16) relative to
    7021 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    7022 Matrix rotation and translation 
    7023 0.99999145 -0.00251228 -0.00328571 0.90822716 
    7024 0.00252047 0.99999372 0.00249112 -0.68641510 
    7025 0.00327943 -0.00249938 0.99999150 0.00344362 
    7026 Axis -0.51656151 -0.67955118 0.52093608 
    7027 Axis point -0.47800571 -0.00000000 276.27622397 
    7028 Rotation angle (degrees) 0.27676795 
    7029 Shift along axis -0.00090708 
    7030  
    7031 
    7032 > fitmap #5.17 inMap #1
    7033 
    7034 Fit molecule combination Q (#5.17) to map
    7035 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1455
    7036 atoms 
    7037 average map value = 0.3481, steps = 28 
    7038 shifted from previous position = 0.0376 
    7039 rotated from previous position = 0.173 degrees 
    7040 atoms outside contour = 229, contour level = 0.12 
    7041  
    7042 Position of combination Q (#5.17) relative to
    7043 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    7044 Matrix rotation and translation 
    7045 0.99999530 -0.00164434 0.00258785 -0.04900956 
    7046 0.00164636 0.99999834 -0.00077865 -0.13759945 
    7047 -0.00258657 0.00078291 0.99999635 0.26805165 
    7048 Axis 0.24677605 0.81772015 0.52003398 
    7049 Axis point 100.63091118 0.00000000 20.53086550 
    7050 Rotation angle (degrees) 0.18128017 
    7051 Shift along axis 0.01478374 
    7052  
    7053 
    7054 > fitmap #5.17 inMap #1
    7055 
    7056 Fit molecule combination Q (#5.17) to map
    7057 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 1455
    7058 atoms 
    7059 average map value = 0.3483, steps = 44 
    7060 shifted from previous position = 0.0387 
    7061 rotated from previous position = 0.0196 degrees 
    7062 atoms outside contour = 228, contour level = 0.12 
    7063  
    7064 Position of combination Q (#5.17) relative to
    7065 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    7066 Matrix rotation and translation 
    7067 0.99999514 -0.00138869 0.00279063 -0.14613544 
    7068 0.00139116 0.99999864 -0.00088082 -0.07767017 
    7069 -0.00278940 0.00088469 0.99999572 0.29989604 
    7070 Axis 0.27248448 0.86120869 0.42903589 
    7071 Axis point 104.05163599 0.00000000 54.69150167 
    7072 Rotation angle (degrees) 0.18561863 
    7073 Shift along axis 0.02195630 
    7074  
    7075 
    7076 > select subtract #5.15
    7077 
    7078 28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 21 models selected 
    7079 
    7080 > rename #5 tophalf
    7081 
    7082 > hide #!5 models
    7083 
    7084 > hide #!1 models
    7085 
    7086 > show #!2 models
    7087 
    7088 > show #!4 models
    7089 
    7090 > hide #!4 models
    7091 
    7092 > hide #!2 models
    7093 
    7094 > show #!5 models
    7095 
    7096 > show #!1 models
    7097 
    7098 > hide #!1 models
    7099 
    7100 Drag select of 9 residues 
    7101 Drag select of 5 residues 
    7102 
    7103 > select clear
    7104 
    7105 Drag select of 1 residues 
    7106 
    7107 > show #!1 models
    7108 
    7109 > select #1
    7110 
    7111 3 models selected 
    7112 
    7113 > combine #5
    7114 
    7115 > hide #!5 models
    7116 
    7117 > color zone #1 near #6 distance 11.3
    7118 
    7119 > rename #6 bottomhalf
    7120 
    7121 Drag select of 1 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc ,
    7122 15 residues 
    7123 Drag select of 1 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc 
    7124 
    7125 > select add #6
    7126 
    7127 28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 4 models selected 
    7128 
    7129 > select subtract #1
    7130 
    7131 28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 2 models selected 
    7132 
    7133 > ui mousemode right "translate selected models"
    7134 
    7135 > view matrix models
    7136 > #6,1,-0.00024274,0.001022,53.633,0.00024,1,0.002683,92.502,-0.0010227,-0.0026827,1,67.904
    7137 
    7138 > show #!5 models
    7139 
    7140 > hide #!5 models
    7141 
    7142 > ui mousemode right "rotate selected models"
    7143 
    7144 > view matrix models
    7145 > #6,-0.89506,0.013162,-0.44574,360.56,-0.088842,-0.98479,0.14932,334.72,-0.437,0.17325,0.88262,118.68
    7146 
    7147 > view matrix models
    7148 > #6,-0.69586,0.46278,-0.5492,295.96,-0.59135,-0.80315,0.07249,385.88,-0.40754,0.37521,0.83254,97.62
    7149 
    7150 > view matrix models
    7151 > #6,-0.8143,0.54871,-0.18929,237.12,-0.57946,-0.74955,0.32001,334.73,0.033715,0.37027,0.92831,27.816
    7152 
    7153 > view matrix models
    7154 > #6,-0.98346,0.012626,0.18068,263.18,-0.084627,-0.91401,-0.39676,419.41,0.16014,-0.40549,0.89996,117.6
    7155 
    7156 > view matrix models
    7157 > #6,-0.99662,0.015971,-0.080567,309.5,-0.016608,-0.99984,0.0072342,352.4,-0.080438,0.0085478,0.99672,76.717
    7158 
    7159 > ui mousemode right "translate selected models"
    7160 
    7161 > view matrix models
    7162 > #6,-0.99662,0.015971,-0.080567,311.93,-0.016608,-0.99984,0.0072342,339.85,-0.080438,0.0085478,0.99672,5.3622
    7163 
    7164 > view matrix models
    7165 > #6,-0.99662,0.015971,-0.080567,326.99,-0.016608,-0.99984,0.0072342,317.92,-0.080438,0.0085478,0.99672,9.669
    7166 
    7167 > view matrix models
    7168 > #6,-0.99662,0.015971,-0.080567,325.99,-0.016608,-0.99984,0.0072342,318.16,-0.080438,0.0085478,0.99672,7.4382
    7169 
    7170 > fitmap #6 inMap #1
    7171 
    7172 Fit molecule bottomhalf (#6) to map
    7173 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
    7174 atoms 
    7175 average map value = 0.3015, steps = 60 
    7176 shifted from previous position = 2.67 
    7177 rotated from previous position = 4.7 degrees 
    7178 atoms outside contour = 6690, contour level = 0.12 
    7179  
    7180 Position of bottomhalf (#6) relative to
    7181 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    7182 Matrix rotation and translation 
    7183 -0.99999962 0.00010436 -0.00086658 316.89879083 
    7184 -0.00010207 -0.99999651 -0.00264062 317.17295730 
    7185 -0.00086685 -0.00264053 0.99999614 0.34592174 
    7186 Axis 0.00043670 0.00132253 -0.99999903 
    7187 Axis point 158.45765544 158.57852998 0.00000000 
    7188 Rotation angle (degrees) 179.99408605 
    7189 Shift along axis 0.21193985 
    7190  
    7191 
    7192 > fitmap #6 inMap #1
    7193 
    7194 Fit molecule bottomhalf (#6) to map
    7195 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
    7196 atoms 
    7197 average map value = 0.3015, steps = 24 
    7198 shifted from previous position = 0.0193 
    7199 rotated from previous position = 0.00595 degrees 
    7200 atoms outside contour = 6683, contour level = 0.12 
    7201  
    7202 Position of bottomhalf (#6) relative to
    7203 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    7204 Matrix rotation and translation 
    7205 -0.99999953 0.00008836 -0.00096838 316.91276632 
    7206 -0.00008579 -0.99999648 -0.00265353 317.16248238 
    7207 -0.00096861 -0.00265344 0.99999601 0.37508957 
    7208 Axis 0.00048821 0.00132940 -0.99999900 
    7209 Axis point 158.46337912 158.57459155 0.00000000 
    7210 Rotation angle (degrees) 179.99501085 
    7211 Shift along axis 0.20126680 
    7212  
    7213 
    7214 > fitmap #6 inMap #1
    7215 
    7216 Fit molecule bottomhalf (#6) to map
    7217 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
    7218 atoms 
    7219 average map value = 0.3013, steps = 28 
    7220 shifted from previous position = 0.048 
    7221 rotated from previous position = 0.0237 degrees 
    7222 atoms outside contour = 6693, contour level = 0.12 
    7223  
    7224 Position of bottomhalf (#6) relative to
    7225 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    7226 Matrix rotation and translation 
    7227 -0.99999943 0.00011397 -0.00106918 316.96276612 
    7228 -0.00011156 -0.99999746 -0.00225304 317.12389681 
    7229 -0.00106944 -0.00225292 0.99999689 0.31801038 
    7230 Axis 0.00053772 0.00112854 -0.99999922 
    7231 Axis point 158.49040838 158.55319257 0.00000000 
    7232 Rotation angle (degrees) 179.99353926 
    7233 Shift along axis 0.21031326 
    7234  
    7235 
    7236 > fitmap #6 inMap #1
    7237 
    7238 Fit molecule bottomhalf (#6) to map
    7239 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) using 28800
    7240 atoms 
    7241 average map value = 0.3014, steps = 40 
    7242 shifted from previous position = 0.0158 
    7243 rotated from previous position = 0.00717 degrees 
    7244 atoms outside contour = 6699, contour level = 0.12 
    7245  
    7246 Position of bottomhalf (#6) relative to
    7247 cryosparc_P231_J120_preholo_manual_sharp_deepEmhancer.mrc (#1) coordinates: 
    7248 Matrix rotation and translation 
    7249 -0.99999945 0.00006741 -0.00104627 316.95170540 
    7250 -0.00006493 -0.99999720 -0.00236680 317.12915113 
    7251 -0.00104642 -0.00236673 0.99999666 0.33203260 
    7252 Axis 0.00052839 0.00118688 -0.99999916 
    7253 Axis point 158.48118629 158.55952967 0.00000000 
    7254 Rotation angle (degrees) 179.99620891 
    7255 Shift along axis 0.21183479 
    7256  
    7257 
    7258 > show #!5 models
    7259 
    7260 > split #66
    7261 
    7262 > split #6
    7263 
    7264 Split bottomhalf (#6) into 17 models 
    7265 Chain information for bottomhalf A #6.1 
    7266 --- 
    7267 Chain | Description 
    7268 A | No description available 
    7269  
    7270 Chain information for bottomhalf B #6.2 
    7271 --- 
    7272 Chain | Description 
    7273 B | No description available 
    7274  
    7275 Chain information for bottomhalf C #6.3 
    7276 --- 
    7277 Chain | Description 
    7278 C | No description available 
    7279  
    7280 Chain information for bottomhalf D #6.4 
    7281 --- 
    7282 Chain | Description 
    7283 D | No description available 
    7284  
    7285 Chain information for bottomhalf E #6.5 
    7286 --- 
    7287 Chain | Description 
    7288 E | No description available 
    7289  
    7290 Chain information for bottomhalf F #6.6 
    7291 --- 
    7292 Chain | Description 
    7293 F | No description available 
    7294  
    7295 Chain information for bottomhalf G #6.7 
    7296 --- 
    7297 Chain | Description 
    7298 G | No description available 
    7299  
    7300 Chain information for bottomhalf H #6.8 
    7301 --- 
    7302 Chain | Description 
    7303 H | No description available 
    7304  
    7305 Chain information for bottomhalf I #6.9 
    7306 --- 
    7307 Chain | Description 
    7308 I | No description available 
    7309  
    7310 Chain information for bottomhalf J #6.10 
    7311 --- 
    7312 Chain | Description 
    7313 J | No description available 
    7314  
    7315 Chain information for bottomhalf K #6.11 
    7316 --- 
    7317 Chain | Description 
    7318 K | No description available 
    7319  
    7320 Chain information for bottomhalf L #6.12 
    7321 --- 
    7322 Chain | Description 
    7323 L | No description available 
    7324  
    7325 Chain information for bottomhalf M #6.13 
    7326 --- 
    7327 Chain | Description 
    7328 M | No description available 
    7329  
    7330 Chain information for bottomhalf N #6.14 
    7331 --- 
    7332 Chain | Description 
    7333 N | No description available 
    7334  
    7335 Chain information for bottomhalf O #6.15 
    7336 --- 
    7337 Chain | Description 
    7338 O | No description available 
    7339  
    7340 Chain information for bottomhalf P #6.16 
    7341 --- 
    7342 Chain | Description 
    7343 P | No description available 
    7344  
    7345 Chain information for bottomhalf Q #6.17 
    7346 --- 
    7347 Chain | Description 
    7348 Q | No description available 
    7349  
    7350 
    7351 > select add #5
    7352 
    7353 28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 22 models selected 
    7354 
    7355 > select add #6
    7356 
    7357 57600 atoms, 58662 bonds, 14 pseudobonds, 7560 residues, 44 models selected 
    7358 
    7359 > hide #!1 models
    7360 
    7361 > combine selected
    7362 
    7363 Expected a keyword 
    7364 
    7365 > combine sel
    7366 
    7367 Remapping chain ID 'A' in bottomhalf A #6.1 to 'R' 
    7368 Remapping chain ID 'B' in bottomhalf B #6.2 to 'S' 
    7369 Remapping chain ID 'C' in bottomhalf C #6.3 to 'T' 
    7370 Remapping chain ID 'D' in bottomhalf D #6.4 to 'U' 
    7371 Remapping chain ID 'E' in bottomhalf E #6.5 to 'V' 
    7372 Remapping chain ID 'F' in bottomhalf F #6.6 to 'W' 
    7373 Remapping chain ID 'G' in bottomhalf G #6.7 to 'X' 
    7374 Remapping chain ID 'H' in bottomhalf H #6.8 to 'Y' 
    7375 Remapping chain ID 'I' in bottomhalf I #6.9 to 'Z' 
    7376 Remapping chain ID 'J' in bottomhalf J #6.10 to 'a' 
    7377 Remapping chain ID 'K' in bottomhalf K #6.11 to 'b' 
    7378 Remapping chain ID 'L' in bottomhalf L #6.12 to 'c' 
    7379 Remapping chain ID 'M' in bottomhalf M #6.13 to 'd' 
    7380 Remapping chain ID 'N' in bottomhalf N #6.14 to 'e' 
    7381 Remapping chain ID 'O' in bottomhalf O #6.15 to 'f' 
    7382 Remapping chain ID 'P' in bottomhalf P #6.16 to 'g' 
    7383 Remapping chain ID 'Q' in bottomhalf Q #6.17 to 'h' 
    7384 
    7385 > hide #!5 models
    7386 
    7387 > hide #!6 models
    7388 
    7389 > select subtract #6
    7390 
    7391 28800 atoms, 29331 bonds, 7 pseudobonds, 3780 residues, 22 models selected 
    7392 
    7393 > select subtract #5
    7394 
    7395 Nothing selected 
    7396 
    7397 > show #!1 models
    7398 
    7399 > color zone #1 near #7 distance 11.3
    7400 
    7401 > rename #7 Structure_20SCP_preholo_mature_beta-
    7402 > subunits_docked_real_space_refined_001-coot-1.pdb
    7403 
    7404 > close #2
    7405 
    7406 > show #!3 models
    7407 
    7408 > hide #!3 models
    7409 
    7410 > hide #!1 models
    7411 
    7412 > hide #!7 models
    7413 
    7414 > show #!3 models
    7415 
    7416 > show #!4 models
    7417 
    7418 > hide #!4 models
    7419 
    7420 > show #!4 models
    7421 
    7422 > hide #!4 models
    7423 
    7424 > show #!4 models
    7425 
    7426 > hide #!4 models
    7427 
    7428 > show #!4 models
    7429 
    7430 > hide #!3 models
    7431 
    7432 > close #4
    7433 
    7434 > show #!5 models
    7435 
    7436 > show #!6 models
    7437 
    7438 > hide #!6 models
    7439 
    7440 > hide #!5 models
    7441 
    7442 > show #!7 models
    7443 
    7444 > show #!1 models
    7445 
    7446 > ui tool show "Side View"
    7447 
    7448 > close #3
    7449 
    7450 > rename #7 id #2
    7451 
    7452 > split #2
    7453 
    7454 Split Structure_20SCP_preholo_mature_beta-
    7455 subunits_docked_real_space_refined_001-coot-1.pdb (#2) into 34 models 
    7456 Chain information for Structure_20SCP_preholo_mature_beta-
    7457 subunits_docked_real_space_refined_001-coot-1.pdb A #2.1 
    7458 --- 
    7459 Chain | Description 
    7460 A | No description available 
    7461  
    7462 Chain information for Structure_20SCP_preholo_mature_beta-
    7463 subunits_docked_real_space_refined_001-coot-1.pdb B #2.2 
    7464 --- 
    7465 Chain | Description 
    7466 B | No description available 
    7467  
    7468 Chain information for Structure_20SCP_preholo_mature_beta-
    7469 subunits_docked_real_space_refined_001-coot-1.pdb C #2.3 
    7470 --- 
    7471 Chain | Description 
    7472 C | No description available 
    7473  
    7474 Chain information for Structure_20SCP_preholo_mature_beta-
    7475 subunits_docked_real_space_refined_001-coot-1.pdb D #2.4 
    7476 --- 
    7477 Chain | Description 
    7478 D | No description available 
    7479  
    7480 Chain information for Structure_20SCP_preholo_mature_beta-
    7481 subunits_docked_real_space_refined_001-coot-1.pdb E #2.5 
    7482 --- 
    7483 Chain | Description 
    7484 E | No description available 
    7485  
    7486 Chain information for Structure_20SCP_preholo_mature_beta-
    7487 subunits_docked_real_space_refined_001-coot-1.pdb F #2.6 
    7488 --- 
    7489 Chain | Description 
    7490 F | No description available 
    7491  
    7492 Chain information for Structure_20SCP_preholo_mature_beta-
    7493 subunits_docked_real_space_refined_001-coot-1.pdb G #2.7 
    7494 --- 
    7495 Chain | Description 
    7496 G | No description available 
    7497  
    7498 Chain information for Structure_20SCP_preholo_mature_beta-
    7499 subunits_docked_real_space_refined_001-coot-1.pdb H #2.8 
    7500 --- 
    7501 Chain | Description 
    7502 H | No description available 
    7503  
    7504 Chain information for Structure_20SCP_preholo_mature_beta-
    7505 subunits_docked_real_space_refined_001-coot-1.pdb I #2.9 
    7506 --- 
    7507 Chain | Description 
    7508 I | No description available 
    7509  
    7510 Chain information for Structure_20SCP_preholo_mature_beta-
    7511 subunits_docked_real_space_refined_001-coot-1.pdb J #2.10 
    7512 --- 
    7513 Chain | Description 
    7514 J | No description available 
    7515  
    7516 Chain information for Structure_20SCP_preholo_mature_beta-
    7517 subunits_docked_real_space_refined_001-coot-1.pdb K #2.11 
    7518 --- 
    7519 Chain | Description 
    7520 K | No description available 
    7521  
    7522 Chain information for Structure_20SCP_preholo_mature_beta-
    7523 subunits_docked_real_space_refined_001-coot-1.pdb L #2.12 
    7524 --- 
    7525 Chain | Description 
    7526 L | No description available 
    7527  
    7528 Chain information for Structure_20SCP_preholo_mature_beta-
    7529 subunits_docked_real_space_refined_001-coot-1.pdb M #2.13 
    7530 --- 
    7531 Chain | Description 
    7532 M | No description available 
    7533  
    7534 Chain information for Structure_20SCP_preholo_mature_beta-
    7535 subunits_docked_real_space_refined_001-coot-1.pdb N #2.14 
    7536 --- 
    7537 Chain | Description 
    7538 N | No description available 
    7539  
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