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Version 2 (modified by trac, 9 years ago) ( diff )
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Trac Ticket Queries

In addition to reports, Trac provides support for custom ticket queries, which can be used to display tickets that meet specified criteria.

To configure and execute a custom query, switch to the View Tickets module from the navigation bar, and select the Custom Query link.

Filters

When you first go to the query page, the default filter will display tickets relevant to you:

If logged in then all open tickets, it will display open tickets assigned to you.
If not logged in but you have specified a name or email address in the preferences, then it will display all open tickets where your email (or name if email not defined) is in the CC list.
If not logged in and no name/email is defined in the preferences, then all open issues are displayed.

Current filters can be removed by clicking the button to the left with the minus sign on the label. New filters are added from the pulldown lists at the bottom corners of the filters box; 'And' conditions on the left, 'Or' conditions on the right. Filters with either a text box or a pulldown menu of options can be added multiple times to perform an Or on the criteria.

You can use the fields just below the filters box to group the results based on a field, or display the full description for each ticket.

After you have edited your filters, click the Update button to refresh your results.

Some shortcuts can be used to manipulate checkbox filters.

Clicking on a filter row label toggles all checkboxes.
Pressing the modifier key while clicking on a filter row label inverts the state of all checkboxes.
Pressing the modifier key while clicking on a checkbox selects the checkbox and deselects all other checkboxes in the filter.

The modifier key is platform and browser dependent. On Mac the modified key is Option/Alt or Command. On Linux the modifier key is Ctrl + Alt. Opera on Windows seems to use Ctrl + Alt, while Alt is effective for other Windows browsers.

Navigating Tickets

Clicking on one of the query results will take you to that ticket. You can navigate through the results by clicking the Next Ticket or Previous Ticket links just below the main menu bar, or click the Back to Query link to return to the query page.

You can safely edit any of the tickets and continue to navigate through the results using the Next/Previous/Back to Query links after saving your results. When you return to the query any tickets which were edited will be displayed with italicized text. If one of the tickets was edited such that it no longer matches the query criteria , the text will also be greyed. Lastly, if a new ticket matching the query criteria has been created, it will be shown in bold.

The query results can be refreshed and cleared of these status indicators by clicking the Update button again.

Saving Queries

Trac allows you to save the query as a named query accessible from the reports module. To save a query ensure that you have Updated the view and then click the Save query button displayed beneath the results. You can also save references to queries in Wiki content, as described below.

Note: one way to easily build queries like the ones below, you can build and test the queries in the Custom report module and when ready - click Save query. This will build the query string for you. All you need to do is remove the extra line breaks.

Note: you must have the REPORT_CREATE permission in order to save queries to the list of default reports. The Save query button will only appear if you are logged in as a user that has been granted this permission. If your account does not have permission to create reports, you can still use the methods below to save a query.

Using TracLinks

You may want to save some queries so that you can come back to them later. You can do this by making a link to the query from any Wiki page.

[query:status=new|assigned|reopened&version=1.0 Active tickets against 1.0]

Which is displayed as:

Active tickets against 1.0

This uses a very simple query language to specify the criteria, see Query Language.

Alternatively, you can copy the query string of a query and paste that into the Wiki link, including the leading ? character:

[query:?status=new&status=assigned&status=reopened&group=owner Assigned tickets by owner]

Which is displayed as:

Assigned tickets by owner

Customizing the table format

You can also customize the columns displayed in the table format (format=table) by using col=<field>. You can specify multiple fields and what order they are displayed in by placing pipes (|) between the columns:

[[TicketQuery(max=3,status=closed,order=id,desc=1,format=table,col=resolution|summary|owner|reporter)]]

This is displayed as:

Results (1 - 3 of 13265)

1 2 3 4 5 6 7 8 9 10 11 →


Ticket	Resolution	Summary	Owner	Reporter
#19481	can't reproduce	Crash using open/save dialog	Eric Pettersen	chimerax-bug-report@…
#19479	can't reproduce	Save command history: Permission Denied	Eric Pettersen	chimerax-bug-report@…
#19476	can't reproduce	Crash in Qt 6.9 event loop processing geometry change, QDockWidget.event()	Tom Goddard	chimerax-bug-report@…

1 2 3 4 5 6 7 8 9 10 11 →

Full rows

In table format you can also have full rows by using rows=<field>:

[[TicketQuery(max=3,status=closed,order=id,desc=1,format=table,col=resolution|summary|owner|reporter,rows=description)]]

This is displayed as:

Results (1 - 3 of 13265)

1 2 3 4 5 6 7 8 9 10 11 →


Ticket	Resolution	Summary	Owner	Reporter
#19481	can't reproduce	Crash using open/save dialog	Eric Pettersen	chimerax-bug-report@…
Description	The following bug report has been submitted: Platform: Windows-10-10.0.26100 ChimeraX Version: 1.11.dev202509100058 (2025-09-10 00:58:36 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_Windows fatal exception: code 0x8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.pyWindows fatal exception: code 0x"8001010e, line 324Windows fatal exception: code 0x in show_open_file_dialog8001010e Windows fatal exception: code 0x File "8001010e C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x2768001010e in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line Windows fatal exception: 368code 0x in 8001010eevent_loop File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py8001010e" Windows fatal exception: code 0x8001010e , line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py8001010e" , line 324 in Windows fatal exception: show_open_file_dialogcode 0x 8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x2768001010e in Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py ", line Windows fatal exception: 368code 0x in 8001010eevent_loop File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.pycode 0x"8001010e Windows fatal exception: code 0x, line 8001010e1064 in init Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py ", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064Windows fatal exception: in code 0xinit8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: , line code 0x12298001010e in Windows fatal exception: File code 0x"8001010e ", line Windows fatal exception: 88code 0x in 8001010e_run_code File Windows fatal exception: "code 0x8001010e" , line 198Windows fatal exception: in code 0x_run_module_as_main8001010e Thread 0x000027bc (most recent call first): Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py ", line Windows fatal exception: 193code 0x in 8001010e_from_kwarg_name_to_kwarg_name_ File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py8001010e" , line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.pyWindows fatal exception: "code 0x8001010e , line 276 in Windows fatal exception: code 0x 8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py"Windows fatal exception: , line code 0x3688001010e in event_loop Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py "Windows fatal exception: code 0x8001010e , line Windows fatal exception: code 0x10648001010e in init Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py "Windows fatal exception: , line code 0x12298001010e in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276Windows fatal exception: in code 0x8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.pyWindows fatal exception: "code 0x, line 8001010e368 in event_loop Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py "Windows fatal exception: code 0x8001010e , line 1064Windows fatal exception: in code 0xinit8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.pycode 0x"8001010e , line 1229Windows fatal exception: in code 0x8001010e File "Windows fatal exception: code 0x"8001010e, line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in Windows fatal exception: code 0x8001010e init File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.pycode 0x"8001010e, line 1229 in Windows fatal exception: code 0x File 8001010e" ", line Windows fatal exception: 88code 0x in 8001010e_run_code File "Windows fatal exception: code 0x"8001010e, line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in Windows fatal exception: code 0x File 8001010e" "Windows fatal exception: code 0x8001010e , line Windows fatal exception: 88code 0x8001010e in Windows fatal exception: _run_codecode 0x8001010e Windows fatal exception: code 0x8001010e File Windows fatal exception: "code 0x8001010e Windows fatal exception: "code 0x, line 8001010e 198Windows fatal exception: in code 0x_run_module_as_main8001010e Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line Windows fatal exception: 193code 0x in 8001010e_from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.pyWindows fatal exception: "code 0x, line 8001010e324 in show_open_file_dialog Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py ", line 276Windows fatal exception: in code 0x8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.pyWindows fatal exception: "code 0x, line 8001010e368 in event_loop Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py "Windows fatal exception: code 0x8001010e , line 1064Windows fatal exception: in code 0xinit8001010e Windows fatal exception: File "code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py ", line 8001010e1229 in File Windows fatal exception: "code 0x8001010e" , line 88Windows fatal exception: in code 0x_run_code8001010e File "Windows fatal exception: code 0x"8001010e, line 198 in Windows fatal exception: _run_module_as_maincode 0x 8001010e Thread 0x000027bcWindows fatal exception: (most recent call first): code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324Windows fatal exception: in code 0xshow_open_file_dialog8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.pycode 0x"8001010e, line 276 in Windows fatal exception: code 0x8001010e Windows fatal exception: File code 0x8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py"Windows fatal exception: , line code 0x8001010e368 in event_loopWindows fatal exception: code 0x8001010e File "Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py8001010e "Windows fatal exception: code 0x8001010e , line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in initWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: , line code 0x12298001010e in Windows fatal exception: code 0x 8001010e File "Windows fatal exception: "code 0x, line 8001010e88 in _run_codeWindows fatal exception: code 0x File 8001010e" "Windows fatal exception: , line code 0x1988001010e in _run_module_as_main Windows fatal exception: code 0x8001010eWindows fatal exception: code 0xThread 0x8001010e000027bc (most recent call first): File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py8001010e" , line 193Windows fatal exception: in code 0x_from_kwarg_name_to_kwarg_name_8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.pycode 0x"8001010e, line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "Windows fatal exception: code 0x8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py ", line 193 in _from_kwarg_name_to_kwarg_name_ Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py" , line 324 in show_open_file_dialogWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: code 0x, line 8001010e 276 in Windows fatal exception: code 0x 8001010e File "Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py"8001010e , line 368Windows fatal exception: code 0x in 8001010e event_loop File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py8001010e" , line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276Windows fatal exception: in code 0x8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.pyWindows fatal exception: "code 0x, line 8001010e368 in event_loopWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: code 0x8001010e , line Windows fatal exception: 1064code 0x in 8001010einit File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.pycode 0x"8001010e, line 1229 in Windows fatal exception: code 0x 8001010e File ""Windows fatal exception: , line code 0x888001010e in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in initWindows fatal exception: code 0x8001010e Windows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: , line code 0x12298001010e in File Windows fatal exception: "code 0x"8001010e, line 88 in _run_code File "Windows fatal exception: "code 0x, line 198 in 8001010e_run_module_as_main Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010eThread 0x 000027bc (most recent call first): Windows fatal exception: File code 0x8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x3248001010e in show_open_file_dialog File "Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"8001010e, line 276 in Windows fatal exception: code 0x8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py"Windows fatal exception: , line 368code 0x in event_loopWindows fatal exception: File code 0x"8001010e8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py "Windows fatal exception: Windows fatal exception: code 0xcode 0x, line 8001010e8001010e1064 in init Windows fatal exception: File code 0x"8001010e Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.pycode 0x"8001010e, line 1229 in Windows fatal exception: File "code 0x"8001010e, line Windows fatal exception: 88code 0x in _run_code8001010e File Windows fatal exception: Windows fatal exception: "code 0xcode 0x8001010e8001010e" , line Windows fatal exception: code 0x198 in 8001010e_run_module_as_main Thread 0x000027bc (most recent call first): Windows fatal exception: File code 0x8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py"Windows fatal exception: code 0x8001010e , line 193 in Windows fatal exception: code 0x8001010e _from_kwarg_name_to_kwarg_name_ Windows fatal exception: code 0x8001010e File "Windows fatal exception: code 0x8001010e C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: code 0x8001010e , line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Windows fatal exception: Thread 0xcode 0x000027bc (most recent call first): 8001010e File " C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in Windows fatal exception: _from_kwarg_name_to_kwarg_name_ code 0x File "8001010e C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x3248001010e in show_open_file_dialog File "Windows fatal exception: code 0x8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py" , line 276 in Windows fatal exception: code 0x File "8001010e C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py"Windows fatal exception: code 0x, line 368 in 8001010e event_loop File "Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"8001010e Windows fatal exception: code 0x8001010e , line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File ""Windows fatal exception: , line code 0x8001010e198 in _run_module_as_mainWindows fatal exception: code 0x 8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in Windows fatal exception: code 0x File "8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py" , line 368 in event_loop File "Windows fatal exception: code 0x8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py" Windows fatal exception: code 0x, line 8001010e 1064 in Windows fatal exception: initcode 0x8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"code 0x, line 8001010e 1229 in Windows fatal exception: code 0x8001010e File "Windows fatal exception: code 0x8001010e" , line 88Windows fatal exception: in code 0x_run_code8001010e File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: , line 1064code 0x in 8001010einit File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: , line code 0x1229 in 8001010e File "Windows fatal exception: "code 0x, line 8001010e88 in _run_codeWindows fatal exception: code 0x File 8001010e" "Windows fatal exception: , line code 0x1988001010e in _run_module_as_main Windows fatal exception: code 0x8001010eWindows fatal exception: code 0xThread 0x8001010e000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x3248001010e in show_open_file_dialog Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py ", line 276Windows fatal exception: in code 0x8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.pycode 0x"8001010e, line 368 in event_loopWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: code 0x8001010e, line 1064 in Windows fatal exception: code 0x8001010einit File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.pycode 0x"8001010e, line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Windows fatal exception: code 0xThread 0x8001010e000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in Windows fatal exception: code 0x_from_kwarg_name_to_kwarg_name_ File 8001010e" Windows fatal exception: code 0x8001010e C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.pyWindows fatal exception: "code 0x, line 8001010e324 in show_open_file_dialogWindows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x2768001010e in Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.pyWindows fatal exception: code 0x8001010eWindows fatal exception: code 0x 8001010e" Windows fatal exception: , line code 0x3688001010e in event_loop Windows fatal exception: File code 0x"8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py "Windows fatal exception: code 0x8001010e , line Windows fatal exception: 1064code 0x in 8001010einit File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.pycode 0x"8001010e , line 1229Windows fatal exception: in code 0x8001010e File "Windows fatal exception: "code 0x, line 8001010e88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010eWindows fatal exception: code 0x8001010eThread 0x 000027bc (most recent call first): Windows fatal exception: code 0x8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.pycode 0x8001010e" , line 193 in Windows fatal exception: _from_kwarg_name_to_kwarg_name_ code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: code 0x8001010e, line 324 in Windows fatal exception: show_open_file_dialogcode 0x8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.pyWindows fatal exception: code 0x"8001010e , line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py"Windows fatal exception: , line code 0x193 in 8001010e_from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x3248001010e in show_open_file_dialog File Windows fatal exception: "code 0x8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py ", line Windows fatal exception: 276 in code 0x8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.pycode 0x"8001010e , line 368Windows fatal exception: in code 0xevent_loop8001010e File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py8001010e" Windows fatal exception: code 0x8001010e , line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in Windows fatal exception: code 0x8001010e init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"Windows fatal exception: , line code 0x12298001010e Windows fatal exception: code 0x in 8001010e File Windows fatal exception: code 0x"8001010e ", line Windows fatal exception: code 0x888001010e in _run_code Windows fatal exception: code 0x File 8001010e ""Windows fatal exception: code 0x8001010e, line 198 in Windows fatal exception: code 0x_run_module_as_main8001010e Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py"code 0x, line 8001010e193 in _from_kwarg_name_to_kwarg_name_ File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py8001010e ", line Windows fatal exception: code 0x8001010e324 in show_open_file_dialog Windows fatal exception: code 0x File "8001010e C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: code 0x, line 8001010e276 in Windows fatal exception: code 0x8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.pyWindows fatal exception: code 0x"8001010e , line 368 in Windows fatal exception: code 0xevent_loop 8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File ""Windows fatal exception: , line 88code 0x in 8001010e_run_code File "", line Windows fatal exception: 198 in code 0x_run_module_as_main8001010e Thread 0x000027bc (most recent call first): Windows fatal exception: File code 0x8001010e "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.pyWindows fatal exception: "code 0x, line 8001010e193 in _from_kwarg_name_to_kwarg_name_ Windows fatal exception: File code 0x"8001010e C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: code 0x, line 8001010e324 in show_open_file_dialog Windows fatal exception: code 0x File "8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py" , line 276 in Windows fatal exception: code 0x File 8001010e" C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py"Windows fatal exception: , line code 0x368 in 8001010eevent_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py"code 0x, line 8001010e1229 in File "Windows fatal exception: "code 0x, line 88 in 8001010e _run_code File ""Windows fatal exception: , line 198code 0x in 8001010e_run_module_as_main Thread 0x000027bc (most recent call first): Windows fatal exception: code 0x8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py"Windows fatal exception: code 0x, line 8001010e 193 in Windows fatal exception: code 0x8001010e_from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.pyWindows fatal exception: "code 0x8001010e, line 324 in show_open_file_dialog File Windows fatal exception: "code 0x8001010eC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py ", line Windows fatal exception: code 0x276 in 8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e8001010e Thread 0x000027bc (most recent call first): File Windows fatal exception: code 0x"8001010e C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py"Windows fatal exception: code 0x, line 8001010e 193 in Windows fatal exception: _from_kwarg_name_to_kwarg_name_code 0x 8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.pycode 0x"8001010e, line 324 in show_open_file_dialogWindows fatal exception: code 0x 8001010e File "Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py8001010e ", line Windows fatal exception: 276code 0x8001010e in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88Windows fatal exception: in code 0x_run_code8001010e File "Windows fatal exception: "code 0x, line 8001010e198 in _run_module_as_mainWindows fatal exception: code 0x8001010e Thread 0xWindows fatal exception: 000027bccode 0x (most recent call first): 8001010e File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py"Windows fatal exception: , line code 0x193 in 8001010e_from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"Windows fatal exception: , line code 0x3248001010e in show_open_file_dialog File Windows fatal exception: "code 0xC:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py"8001010e, line 276 in Windows fatal exception: code 0x8001010e File "Windows fatal exception: C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py"code 0x, line 3688001010e in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_ File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 324 in show_open_file_dialog File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\open_command\dialog.py", line 276 in File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\ui\gui.py", line 368 in event_loop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1064 in init File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\core\__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Windows fatal exception: code 0x8001010e Thread 0x000027bc (most recent call first): File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\atomic\molc.py", line 338 in pointer File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\atomic\molc.py", line 58 in get_prop File "C:\Program Files\ChimeraX 1.11.dev202509100058\bin\Lib\site-packages\chimerax\atomic\structure.py", line 1985 in _update_graphics_if_needed File "", line 720 in __ior__ File ???, line 0 in ??? Windows fatal exception: access violation Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0xWindows fatal exception: 8001010e code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e Windows fatal exception: code 0x8001010e ===== Log before crash start ===== UCSF ChimeraX version: 1.11.dev202509100058 (2025-09-10) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > H:\My_PhD\SERT_Piperazines_docking\Analysis\SERT_all_conformation_Substrates_all.cxs > format session > view name session-start opened ChimeraX session > hide #2-3,5-6,8-9,11-12,14-15#!1,4,7,10,13 target m > show #!1 models > show #2 models > show #3 models > hide #3 models > hide #2 models > hide #!1 models > show #!7 models > show #8 models > show #9 models > ui tool show "Side View" > hide #9 models > hide #8 models > show #!1 models > show #2 models > show #3 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #8 models > hide #8 models > show #9 models > hide #9 models > show #8 models > hide #8 models > hide #!1 models > hide #2 models > show #!4 models > show #5 models > show #6 models > show #2 models > hide #2 models > hide #!4 models > hide #5 models > show #!7 models > show #8 models > show #9 models > hide #6 models > hide #!7 models > hide #8 models > show #!10 models > show #11 models > show #12 models > hide #9 models > hide #3 models > hide #!10 models > hide #11 models > hide #12 models > show #15 models > show #14 models > show #!13 models > hide #15 models > hide #!13 models > hide #14 models > show #!1 models > show #2 models > show #3 models > hide #2 models > hide #!1 models > hide #3 models > show #!1 models > show #!4 models > show #5 models > show #6 models > hide #6 models > hide #5 models > hide #!4 models > show #!7 models > show #8 models > show #9 models > hide #9 models > hide #!7 models > show #!10 models > show #11 models > show #12 models > hide #!10 models > hide #12 models > show #!13 models > show #14 models > show #15 models > hide #11 models > hide #8 models > show #2 models > hide #!1 models > show #!1 models > show #3 models > hide #!13 models > hide #14 models > hide #15 models > hide #!1 models > hide #2 models > hide #3 models > show #!4 models > show #5 models > show #6 models > hide #6 models > hide #5 models > hide #!4 models > show #!7 models > show #8 models > show #9 models > save > H:/My_PhD/SERT_Piperazines_docking/Analysis/SERT_all_conformation_Substrates_all_for_substrte- > ring_displacement.cxs > close session ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11.dev202509100058 (2025-09-10) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.0 NVIDIA 571.96 OpenGL renderer: NVIDIA GeForce RTX 3050 Ti Laptop GPU/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.11.9 Locale: en_US.cp1252 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: windows Manufacturer: ASUSTeK COMPUTER INC. Model: ASUS TUF Dash F15 FX516PE_FX516PE OS: Microsoft Windows 11 Home (Build 26100) Memory: 16,856,203,264 MaxProcessMemory: 137,438,953,344 CPU: 8 11th Gen Intel(R) Core(TM) i7-11370H @ 3.30GHz OSLanguage: en-US Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 asttokens: 3.0.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.7.2 build: 1.3.0 certifi: 2025.8.3 cftime: 1.6.4.post1 charset-normalizer: 3.4.3 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.0.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.16 ChimeraX-AtomicLibrary: 14.2 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.dev202509100058 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.1 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.17.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NIHPresets: 1.2.8 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.11 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.3.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.2.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.2 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.48.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.3.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.3 comtypes: 1.4.11 contourpy: 1.3.3 coverage: 7.10.6 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.3 debugpy: 1.8.16 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.59.2 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2025.4.15 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.7 jedi: 0.19.2 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.1 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.2 matplotlib: 3.10.5 matplotlib-inline: 0.1.7 MolecularDynamicsViewer: 1.6 msgpack: 1.1.1 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 nvidia-nvjitlink-cu12: 12.9.86 OpenMM: 8.2.0 OpenMM-CUDA-12: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.4.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 psutil: 7.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 8.4.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 pytz: 2025.2 pywin32: 311 pyzmq: 27.1.0 qtconsole: 5.6.1 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 requests: 2.32.4 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.2 traitlets: 5.14.3 typing_extensions: 4.15.0 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 WMI: 1.5.1
#19479	can't reproduce	Save command history: Permission Denied	Eric Pettersen	chimerax-bug-report@…
Description	The following bug report has been submitted: Platform: Windows-10-10.0.26100 ChimeraX Version: 1.11rc202512020129 (2025-12-02 01:29:55 UTC) Description selected residues in MatchMaker Alignment Log: UCSF ChimeraX version: 1.11rc202512020129 (2025-12-02) © 2016-2025 Regents of the University of California. All rights reserved. > open C:/Users/evc1/Downloads/12_3_2025_GII.17_workspace_epitopeColored.cxs Log from Thu Dec 4 10:11:43 2025UCSF ChimeraX version: 1.11rc202512020129 (2025-12-02) © 2016-2025 Regents of the University of California. All rights reserved. > open C:\Users\evc1\Downloads\12_3_2025_GII.17_workspace.cxs format session Log from Wed Dec 3 15:50:48 2025UCSF ChimeraX version: 1.11rc202512020129 (2025-12-02) © 2016-2025 Regents of the University of California. All rights reserved. > open > \\\groups.biotech.cdc.gov\groups\OID\NCIRD\DVD\VGB\Norovirus\Helen\phylogenetics\protein_modeling\GII.17_2025\work_session_superimposition.cxs > format session Log from Tue Dec 2 14:05:21 2025UCSF ChimeraX version: 1.11rc202512020129 (2025-12-02) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > //groups.biotech.cdc.gov/groups/OID/NCIRD/DVD/VGB/Norovirus/Helen/phylogenetics/protein_modeling/GII.17_2025/reference_backbone/8V97.cif Summary of feedback from opening //groups.biotech.cdc.gov/groups/OID/NCIRD/DVD/VGB/Norovirus/Helen/phylogenetics/protein_modeling/GII.17_2025/reference_backbone/8V97.cif --- notes \| Fetching CCD EDO from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/O/EDO/EDO.cif Fetching CCD PEG from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/PEG/PEG.cif 8V97.cif title: GII.17 CS-E1 norovirus protruding domain [more info...] Chain information for 8V97.cif #1 --- Chain \| Description \| UniProt A B \| Capsid protein VP1 \| Q6EAX3_9CALI 1-540 Non-standard residues in 8V97.cif #1 --- EDO — 1,2-ethanediol (ethylene glycol) PEG — di(hydroxyethyl)ether 47 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > open > //groups.biotech.cdc.gov/groups/OID/NCIRD/DVD/VGB/Norovirus/Helen/phylogenetics/protein_modeling/GII.17_2025/AlphaFold_output/fold_2025_12_01_gii17_new_orf2/fold_2025_12_01_gii17_new_orf2_model_0.cif Chain information for fold_2025_12_01_gii17_new_orf2_model_0.cif #2 --- Chain \| Description A \| . Computing secondary structure > open > //groups.biotech.cdc.gov/groups/OID/NCIRD/DVD/VGB/Norovirus/Helen/phylogenetics/protein_modeling/GII.17_2025/AlphaFold_output/gii17_santaclara_vehq_orf2/fold_2025_12_02_gii17_santaclara_vehq_orf2_model_0.cif Chain information for fold_2025_12_02_gii17_santaclara_vehq_orf2_model_0.cif #3 --- Chain \| Description A \| . Computing secondary structure > open > //groups.biotech.cdc.gov/groups/OID/NCIRD/DVD/VGB/Norovirus/Helen/phylogenetics/protein_modeling/GII.17_2025/AlphaFold_output/gii17_santaclara_venq_orf2/fold_2025_12_02_gii17_santaclara_venq_orf2_model_0.cif Chain information for fold_2025_12_02_gii17_santaclara_venq_orf2_model_0.cif #4 --- Chain \| Description A \| . Computing secondary structure > hide #3 models > hide #4 models > select :270-415 5568 atoms, 5713 bonds, 730 residues, 4 models selected > select ~sel 12603 atoms, 12060 bonds, 2369 residues, 4 models selected > color (#1-2 & sel) gray > show #3 models > show #4 models > color sel gray > select ~sel 5568 atoms, 5713 bonds, 730 residues, 4 models selected > hide #3 models > hide #4 models > ui tool show Matchmaker > rename #2 NEW > rename #3 SantaClara_VEHQ > rename #4 SantaClara_VENQ > rename #1 prototype_8V97 > rename #2 new > ui tool show Matchmaker > matchmaker #2 & sel to #1 & sel showAlignment true Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker prototype_8V97, chain A (#1) with new, chain A (#2), sequence alignment score = 667 Alignment identifier is 1 Showing conservation header ("seq_conservation" residue attribute) for alignment 1 Hiding conservation header for alignment 1 Chains used in RMSD evaluation for alignment 1: prototype_8V97 #1/A, new #2/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1 RMSD between 139 pruned atom pairs is 0.494 angstroms; (across all 143 pairs: 0.790) > select clear > show #3 models > show #4 models > ui tool show Matchmaker > matchmaker #2-4 & sel to #1 & sel showAlignment true No 'to' model specified > matchmaker #2-4 & sel to #1 & sel showAlignment true No 'to' model specified > matchmaker #3 & sel to #1 & sel showAlignment true No 'to' model specified > select :270-415 5568 atoms, 5713 bonds, 730 residues, 4 models selected > matchmaker #2-4 & sel to #1 & sel showAlignment true Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker prototype_8V97, chain A (#1) with new, chain A (#2), sequence alignment score = 667 Alignment identifier is 2 Showing conservation header ("seq_conservation" residue attribute) for alignment 2 Hiding conservation header for alignment 2 Chains used in RMSD evaluation for alignment 2: prototype_8V97 #1/A, new #2/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2 RMSD between 139 pruned atom pairs is 0.494 angstroms; (across all 143 pairs: 0.790) Matchmaker prototype_8V97, chain A (#1) with SantaClara_VEHQ, chain A (#3), sequence alignment score = 664.4 Alignment identifier is 3 Showing conservation header ("seq_conservation" residue attribute) for alignment 3 Hiding conservation header for alignment 3 Chains used in RMSD evaluation for alignment 3: prototype_8V97 #1/A, SantaClara_VEHQ #3/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 3 RMSD between 136 pruned atom pairs is 0.487 angstroms; (across all 145 pairs: 1.061) Matchmaker prototype_8V97, chain A (#1) with SantaClara_VENQ, chain A (#4), sequence alignment score = 665.1 Alignment identifier is 4 Showing conservation header ("seq_conservation" residue attribute) for alignment 4 Hiding conservation header for alignment 4 Chains used in RMSD evaluation for alignment 4: prototype_8V97 #1/A, SantaClara_VENQ #4/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 4 RMSD between 141 pruned atom pairs is 0.510 angstroms; (across all 145 pairs: 0.704) > matchmaker #2-4 & sel to #1 & sel showAlignment true Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker prototype_8V97, chain A (#1) with new, chain A (#2), sequence alignment score = 667 Alignment identifier is 5 Showing conservation header ("seq_conservation" residue attribute) for alignment 5 Hiding conservation header for alignment 5 Chains used in RMSD evaluation for alignment 5: prototype_8V97 #1/A, new #2/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 5 RMSD between 139 pruned atom pairs is 0.494 angstroms; (across all 143 pairs: 0.790) Matchmaker prototype_8V97, chain A (#1) with SantaClara_VEHQ, chain A (#3), sequence alignment score = 664.4 Alignment identifier is 6 Showing conservation header ("seq_conservation" residue attribute) for alignment 6 Hiding conservation header for alignment 6 Chains used in RMSD evaluation for alignment 6: prototype_8V97 #1/A, SantaClara_VEHQ #3/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 6 RMSD between 136 pruned atom pairs is 0.487 angstroms; (across all 145 pairs: 1.061) Matchmaker prototype_8V97, chain A (#1) with SantaClara_VENQ, chain A (#4), sequence alignment score = 665.1 Alignment identifier is 7 Showing conservation header ("seq_conservation" residue attribute) for alignment 7 Hiding conservation header for alignment 7 Chains used in RMSD evaluation for alignment 7: prototype_8V97 #1/A, SantaClara_VENQ #4/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 7 RMSD between 141 pruned atom pairs is 0.510 angstroms; (across all 145 pairs: 0.704) > ui tool show "Selection Inspector" > select ~sel 12603 atoms, 12060 bonds, 2369 residues, 4 models selected > select clear > hide #3 models > hide #4 models > morph #1,2 warp true frames 60 Expected a keyword > morph #1,2 wrap true frames 60 models have different number of chains, 2 (Morph - prototype_8V97 #/A,Morph - prototype_8V97 #/B) and 1 (new #2/A) > split #1 Split prototype_8V97 (#1) into 2 models Chain information for prototype_8V97 A #1.1 --- Chain \| Description A \| No description available Associated prototype_8V97 A (1.1) chain A to prototype_8V97, chain A with 0 mismatches Associated prototype_8V97 B (1.2) chain B to prototype_8V97, chain A with 0 mismatches Associated prototype_8V97 A (1.1) chain A to prototype_8V97, chain A with 0 mismatches Associated prototype_8V97 B (1.2) chain B to prototype_8V97, chain A with 0 mismatches Associated prototype_8V97 A (1.1) chain A to prototype_8V97, chain A with 0 mismatches Associated prototype_8V97 B (1.2) chain B to prototype_8V97, chain A with 0 mismatches Chain information for prototype_8V97 B #1.2 --- Chain \| Description B \| No description available Chains used in RMSD evaluation for alignment 2: prototype_8V97 A #1.1/A, prototype_8V97 B #1.2/B, new #2/A Chains used in RMSD evaluation for alignment 3: prototype_8V97 A #1.1/A, prototype_8V97 B #1.2/B, SantaClara_VEHQ #3/A Chains used in RMSD evaluation for alignment 4: prototype_8V97 A #1.1/A, prototype_8V97 B #1.2/B, SantaClara_VENQ #4/A > morph #1,2 wrap true frames 60 Associated Morph - prototype_8V97 A chain A to prototype_8V97, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 2: prototype_8V97 A #1.1/A, prototype_8V97 B #1.2/B, new #2/A, Morph - prototype_8V97 A #5/A Associated Morph - prototype_8V97 A chain A to prototype_8V97, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 3: prototype_8V97 A #1.1/A, prototype_8V97 B #1.2/B, SantaClara_VEHQ #3/A, Morph - prototype_8V97 A #5/A Associated Morph - prototype_8V97 A chain A to prototype_8V97, chain A with 0 mismatches Chains used in RMSD evaluation for alignment 4: prototype_8V97 A #1.1/A, prototype_8V97 B #1.2/B, SantaClara_VENQ #4/A, Morph - prototype_8V97 A #5/A Computed 181 frame morph #5 > coordset #5 1,181 > hide #5.1 models > show #2 models > show #5.1 models > show #1.1 models > hide #!1 models > hide #1.1 models > show #1.1 models > hide #!5 models > show target m > hide target m > show target m > hide target m > show #1.1 models > show #2 models > save > //groups.biotech.cdc.gov/groups/OID/NCIRD/DVD/VGB/Norovirus/Helen/phylogenetics/protein_modeling/GII.17_2025/work_session_superimposition.cxs > hide #2 models > show #3 models > show #2 models > hide #2 models > show #2 models > hide #2 models > show #2 models > hide #2 models > show #4 models > hide #4 models > show #4 models > hide #4 models > show #4 models > hide #4 models > show #4 models > hide #1.1 models > coulombic #3-4 Using Amber 20 recommended default charges and atom types for standard residues [Repeated 1 time(s)]Coulombic values for SantaClara_VEHQ_A SES surface #3.1: minimum, -19.64, mean -2.45, maximum 11.97 Coulombic values for SantaClara_VENQ_A SES surface #4.1: minimum, -17.14, mean -2.47, maximum 13.55 To also show corresponding color key, enter the above coulombic command and add key true > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > hide #3.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > hide #!3 models > show #!3 models > hide #3.1 models > show #3.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > hide #3.1 models > mlp #!3-4 Map values for surface "SantaClara_VENQ_A SES surface": minimum -29.38, mean -5.265, maximum 22.48 Map values for surface "SantaClara_VEHQ_A SES surface": minimum -28.05, mean -5.403, maximum 22.27 To also show corresponding color key, enter the above mlp command and add key true > hide #4.1 models > show #4.1 models > hide #3.1 models > show #3.1 models > hide #4.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > hide #!3 models > show #!3 models > show #4.1 models > show #3.1 models > show #1.1 models > show #1.2 models > hide #1.2 models > mlp #1.1#!3-4 Map values for surface "SantaClara_VENQ_A SES surface": minimum -29.38, mean -5.265, maximum 22.48 Map values for surface "SantaClara_VEHQ_A SES surface": minimum -28.05, mean -5.403, maximum 22.27 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > hide #1.1.1 models > show #1.1.1 models > hide #4.1 models > hide #!4 models > hide #1.1.1 models > show #1.1.1 models > hide #1.1.1 models > show #1.1.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #1.1.1 models > hide #3.1 models > show #1.1.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > coulombic #!3#!1.1 Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for SantaClara_VEHQ_A SES surface #3.1: minimum, -19.64, mean -2.45, maximum 11.97 Coulombic values for prototype_8V97 A_A SES surface #1.1.1: minimum, -14.58, mean -1.76, maximum 14.31 To also show corresponding color key, enter the above coulombic command and add key true > hide #3.1 models > show #3.1 models > show #4.1 models > hide #4.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > color #!3-4#!1.1 bynucleotide > hide #1.1.1 models > hide #3.1 models > label #!1,3-4#!1.1 text "{0.name} {0.number}{0.insertion_code}" > label clear Expected one of 'atoms', 'bonds', 'models', 'pseudobonds', or 'residues' or a keyword > label clear residues Expected one of 'atoms', 'bonds', 'models', 'pseudobonds', or 'residues' or a keyword > label residues \clear Expected a keyword > label residues clear Expected a keyword > ~label #3.2#4.2#1.1.2#!1,3-4#!1.1 residues > select 20470 atoms, 20146 bonds, 1 pseudobond, 3401 residues, 8 models selected > select :341-346 211 atoms, 207 bonds, 1 pseudobond, 33 residues, 7 models selected > style sel & #!3-4#!1.1 ball Changed 107 atom styles > style sel & #!3-4#!1.1 stick Changed 107 atom styles > mlp sel & #!3-4#!1.1 Map values for surface "SantaClara_VENQ_A SES surface": minimum -29.38, mean -5.265, maximum 22.48 Map values for surface "SantaClara_VEHQ_A SES surface": minimum -28.05, mean -5.403, maximum 22.27 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > select subtract #3.1 177 atoms, 174 bonds, 1 pseudobond, 27 residues, 9 models selected > select add #3.1 4344 atoms, 174 bonds, 1 pseudobond, 568 residues, 9 models selected > select subtract #4.1 4311 atoms, 142 bonds, 1 pseudobond, 562 residues, 9 models selected > select subtract #3.1 144 atoms, 142 bonds, 1 pseudobond, 21 residues, 7 models selected > select subtract #5.1 144 atoms, 142 bonds, 21 residues, 5 models selected > hide #1.1.1 models > hide #3.1 models > hide #4.1 models > show #4.1 models > show #3.1 models > hide #3.1 models > show #1.1.1 models > hide #1.1.1 models > show #1.1.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > show #4.1 models > hide #4.1 models > hide #1.1.1 models > show #1.1.1 models > show #3.1 models > hide #1.1.1 models > show #1.1.1 models > color sel & #!1.1 bynucleotide > hide #1.1.1 models > show #1.1.1 models > hide #3.1 models > hide #1.1.1 models > show #1.1.1 models > show #3.1 models > hide #1.1.1 models > show #1.1.1 models > hide #1.1.1 models > select :330-350 884 atoms, 887 bonds, 1 pseudobond, 123 residues, 7 models selected > mlp sel & #!3-4#!1.1 Map values for surface "SantaClara_VENQ_A SES surface": minimum -29.38, mean -5.265, maximum 22.48 Map values for surface "SantaClara_VEHQ_A SES surface": minimum -28.05, mean -5.403, maximum 22.27 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > select subtract #4.1 741 atoms, 744 bonds, 1 pseudobond, 102 residues, 9 models selected > select subtract #3.1 597 atoms, 600 bonds, 1 pseudobond, 81 residues, 7 models selected > select subtract #5.1 597 atoms, 600 bonds, 81 residues, 5 models selected > hide #4.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > show #3.1 models > hide #3.1 models > save > //groups.biotech.cdc.gov/groups/OID/NCIRD/DVD/VGB/Norovirus/Helen/phylogenetics/protein_modeling/GII.17_2025/work_session_superimposition.cxs ——— End of log from Tue Dec 2 14:05:21 2025 ——— > view name session-start opened ChimeraX session > select :270-415 6626 atoms, 6797 bonds, 1 pseudobond, 873 residues, 7 models selected > select add #1.2 8357 atoms, 8122 bonds, 1 pseudobond, 1477 residues, 10 models selected > select subtract #1.2 5514 atoms, 5656 bonds, 1 pseudobond, 727 residues, 9 models selected > hide #!4 models > hide #!3 models > show #2 models > color sel & #2#!1.1 bychain > color (#2#!1.1 & sel) light gray > mlp sel & #2#!1.1 Map values for surface "new_A SES surface": minimum -28.04, mean -5.29, maximum 22.61 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > color sel & #!2#!1.1 bychain > color (#!2#!1.1 & sel) light gray > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show sel & #!1.1 cartoons > hide sel & #!1.1 surfaces > show #!2 models > hide sel & #!2#!1.1 surfaces > show sel & #!2#!1.1 cartoons > show sel & #!2#!1.1 surfaces > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide sel & #!2#!1.1 surfaces > select :405-415 516 atoms, 525 bonds, 66 residues, 6 models selected > show sel & #!2#!1.1 surfaces > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > hide #!1.1 models > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > show #!1.1 models > hide #!1.1 models > hide #!2 models > show #!2 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > select ~sel 19954 atoms, 19609 bonds, 1 pseudobond, 3335 residues, 8 models selected > hide sel & #!2 cartoons > select ~sel 516 atoms, 525 bonds, 66 residues, 6 models selected > show #!1.1 models > select :270-415 6626 atoms, 6797 bonds, 1 pseudobond, 873 residues, 7 models selected > select ~sel 13844 atoms, 13337 bonds, 2528 residues, 7 models selected > hide sel & #!2#!1.1 cartoons > select :270-415 6626 atoms, 6797 bonds, 1 pseudobond, 873 residues, 7 models selected > select :405-415 516 atoms, 525 bonds, 66 residues, 6 models selected > hide #2.1 models > show #2.1 models > hide #2.1 models > hide #!1.1 models > show #!1.1 models > hide sel & #!2#!1.1 cartoons [Repeated 1 time(s)] > show #2.1 models > hide #2.1 models > show #2.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > select :400-415 802 atoms, 831 bonds, 96 residues, 6 models selected > mlp sel & #!2#!1.1 Map values for surface "new_A SES surface": minimum -28.04, mean -5.29, maximum 22.61 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > color sel & #!2#!1.1 bychain > select :390-415 1247 atoms, 1285 bonds, 156 residues, 6 models selected > mlp sel & #!2#!1.1 Map values for surface "new_A SES surface": minimum -28.04, mean -5.29, maximum 22.61 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > color sel & #!2#!1.1 bychain > hide #2.1 models > show #2.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > select ~sel 19223 atoms, 18849 bonds, 1 pseudobond, 3245 residues, 8 models selected > hide sel & #!2#!1.1 cartoons > select ~sel 1247 atoms, 1285 bonds, 156 residues, 6 models selected > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > coulombic sel & #!2#!1.1 Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for new_A SES surface #2.1: minimum, -18.37, mean -2.63, maximum 11.52 Coulombic values for prototype_8V97 A_A SES surface #1.1.1: minimum, -14.58, mean -1.76, maximum 14.31 To also show corresponding color key, enter the above coulombic command and add key true > color sel & #!2#!1.1 bychain > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > mlp sel & #!2#!1.1 Map values for surface "new_A SES surface": minimum -28.04, mean -5.29, maximum 22.61 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > color sel & #!2#!1.1 bychain > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > color sel & #!2#!1.1 bychain > hide #2.1 models > show #2.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide sel & #!2#!1.1 surfaces [Repeated 1 time(s)] > show sel & #!2#!1.1 cartoons > style sel & #!2#!1.1 ball Changed 426 atom styles > show sel & #!2#!1.1 atoms > color sel & #!2#!1.1 bynucleotide > select :285-305 1039 atoms, 1064 bonds, 126 residues, 6 models selected > show sel & #!2#!1.1 surfaces > show sel & #!2#!1.1 cartoons > color sel & #!2#!1.1 bychain > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > show sel & #!2#!1.1 cartoons > select :294-299 277 atoms, 279 bonds, 36 residues, 6 models selected > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > select :330-360 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > show sel & #!2#!1.1 surfaces > show sel & #!2#!1.1 cartoons > select ~sel 19154 atoms, 18809 bonds, 3218 residues, 7 models selected > hide sel & #!2#!1.1 surfaces > hide sel & #!2#!1.1 cartoons > hide sel & #!2#!1.1 atoms > select ~sel 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > select :344-347 154 atoms, 150 bonds, 23 residues, 6 models selected > select :342-345 128 atoms, 123 bonds, 21 residues, 6 models selected > select :341-345 176 atoms, 170 bonds, 1 pseudobond, 27 residues, 7 models selected > hide sel & #!2#!1.1 surfaces > show sel & #!2#!1.1 atoms > style sel & #!2#!1.1 ball Changed 70 atom styles > select ~sel 20294 atoms, 19964 bonds, 3374 residues, 7 models selected > transparency 80 > transparency 70 > select :341-345 176 atoms, 170 bonds, 1 pseudobond, 27 residues, 7 models selected > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > color sel & #!2#!1.1 bychain > coulombic sel & #!2#!1.1 Coulombic values for new_A SES surface #2.1: minimum, -18.37, mean -2.63, maximum 11.52 Coulombic values for prototype_8V97 A_A SES surface #1.1.1: minimum, -14.58, mean -1.76, maximum 14.31 To also show corresponding color key, enter the above coulombic command and add key true > color sel & #!2#!1.1 bychain > transparency 75 > hide #2.1 models > show #2.1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > select :330-360 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > color sel & #!1.1 bychain > coulombic sel & #!1.1 Coulombic values for prototype_8V97 A_A SES surface #1.1.1: minimum, -14.58, mean -1.76, maximum 14.31 To also show corresponding color key, enter the above coulombic command and add key true > color sel & #!1.1 bychain > show #!2 models > mlp sel & #!2#!1.1 Map values for surface "new_A SES surface": minimum -28.04, mean -5.29, maximum 22.61 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > color sel & #!2#!1.1 bychain > select :330-375 1971 atoms, 1997 bonds, 1 pseudobond, 273 residues, 7 models selected > coulombic sel & #!2#!1.1 Coulombic values for new_A SES surface #2.1: minimum, -18.37, mean -2.63, maximum 11.52 Coulombic values for prototype_8V97 A_A SES surface #1.1.1: minimum, -14.58, mean -1.76, maximum 14.31 To also show corresponding color key, enter the above coulombic command and add key true > select :320-360 1739 atoms, 1772 bonds, 1 pseudobond, 243 residues, 7 models selected > coulombic sel & #!2#!1.1 Coulombic values for new_A SES surface #2.1: minimum, -18.37, mean -2.63, maximum 11.52 Coulombic values for prototype_8V97 A_A SES surface #1.1.1: minimum, -14.58, mean -1.76, maximum 14.31 To also show corresponding color key, enter the above coulombic command and add key true > select :330-360 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > coulombic sel & #!2#!1.1 Coulombic values for new_A SES surface #2.1: minimum, -18.37, mean -2.63, maximum 11.52 Coulombic values for prototype_8V97 A_A SES surface #1.1.1: minimum, -14.58, mean -1.76, maximum 14.31 To also show corresponding color key, enter the above coulombic command and add key true > color sel & #!2#!1.1 bychain > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > undo > hide #2.1 models > show #2.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > mlp sel & #!2 Map values for surface "new_A SES surface": minimum -28.04, mean -5.29, maximum 22.61 To also show corresponding color key, enter the above mlp command and add key true > show #!1.1 models > color sel & #!2#!1.1 bychain > hide #2.1 models > show #2.1 models > hide #2.1 models > hide sel & #!2#!1.1 atoms > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > style sel & #!2#!1.1 ball Changed 457 atom styles > show sel & #!2#!1.1 atoms > transparency 75 > hide #2.1 models > show #2.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > select ~sel 19154 atoms, 18809 bonds, 3218 residues, 7 models selected > coulombic sel & #!2 Coulombic values for new_A SES surface #2.1: minimum, -18.37, mean -2.63, maximum 11.52 To also show corresponding color key, enter the above coulombic command and add key true > color sel & #!2 bychain > color (#!2 & sel) gray > select ~sel 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > show sel & #!2 surfaces > color sel & #!2 bychain > transparency 75 > set bgColor white > show #!1.1 models > hide #!1.1 models > hide #2.1 models > show #!1.1 models > hide #!1.1 models > show #2.1 models > hide #!2 models > show #!1.1 models > show #!2 models > hide #!2 models > select :330-360 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > hide sel & #!1.1 surfaces > select :330-340 481 atoms, 481 bonds, 66 residues, 6 models selected > hide sel & #!1.1 atoms > select :349-360 533 atoms, 534 bonds, 72 residues, 6 models selected > hide sel & #!1.1 atoms > select :346-360 659 atoms, 662 bonds, 90 residues, 6 models selected > select :349-360 533 atoms, 534 bonds, 72 residues, 6 models selected > hide sel & #!1.1 atoms > show #!2 models > hide #!1.1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1.1 models > hide #!1.1 models > hide sel & #!2 atoms > select :330-341 529 atoms, 529 bonds, 72 residues, 6 models selected > hide sel & #!2 atoms > hide sel & #!2 cartoons > show sel & #!2 cartoons > show #!1.1 models > hide #!1.1 models > show #!1.1 models > show sel & #!2#!1.1 surfaces > hide #!1.1 models > show #!1.1 models > select :330-360 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > show sel & #!2#!1.1 surfaces > hide #!1.1 models > show #!1.1 models > hide #!1.1 models > show #!1.1 models > hide #2.1 models > show #2.1 models > hide #!2 models > select clear > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > hide #2.1 models > show #!2 models > show #2.1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > select :330-360 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > select ~sel 19154 atoms, 18809 bonds, 3218 residues, 7 models selected > coulombic sel & #!1.1 Coulombic values for prototype_8V97 A_A SES surface #1.1.1: minimum, -14.58, mean -1.76, maximum 14.31 To also show corresponding color key, enter the above coulombic command and add key true > color sel & #!1.1 bychain > color (#!1.1 & sel) gray > transparency 75 > select ~sel 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > mlp sel & #!1.1 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > select :270-415 6626 atoms, 6797 bonds, 1 pseudobond, 873 residues, 7 models selected > mlp sel & #!1.1 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > color sel & #!1.1 bychain > show #!2 models > hide #!2 models > select :330-360 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > select ~sel 19154 atoms, 18809 bonds, 3218 residues, 7 models selected > color (#!1.1 & sel) gray > transparency 75 > select ~sel 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > save C:/Users/evc1/Downloads/12_3_2025_GII.17_workspace.cxs > select :342-344 88 atoms, 84 bonds, 15 residues, 5 models selected > hide #1.1.1 models > select :342-345 128 atoms, 123 bonds, 21 residues, 6 models selected > color (#!1.1 & sel) magenta > show #1.1.1 models > hide sel & #!1.1 surfaces > show sel & #!1.1 surfaces > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > save C:\Users\evc1/Desktop\image2.png supersample 3 > show #!2 models > hide #!1 models > select clear > select :330-360 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > color (#!2 & sel) gray > color (#!2 & sel) dim gray > select ~sel 19154 atoms, 18809 bonds, 3218 residues, 7 models selected > color (#!2 & sel) dim gray > show #!1 models > hide #!2 models > color (#!1.1 & sel) dim gray > select ~sel 1316 atoms, 1325 bonds, 1 pseudobond, 183 residues, 7 models selected > color (#!1.1 & sel) dim gray > select :342-345 128 atoms, 123 bonds, 21 residues, 6 models selected > color (#!1.1 & sel) light sea green > color (#!1.1 & sel) cornflower blue > color (#!1.1 & sel) medium blue > color (#!1.1 & sel) blue > color (#!1.1 & sel) light sea green > hide #!1 models > show #!2 models > select clear > show #1.2 models > hide #!1 models > hide #1.2 models > hide #!2 models > show #!2 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > save C:\Users\evc1/Desktop\image2.png supersample 3 > hide #!1 models > show #!2 models > save C:\Users\evc1/Desktop\image2.png supersample 3 > save C:/Users/evc1/Downloads/12_3_2025_GII.17_workspace.cxs ——— End of log from Wed Dec 3 15:50:48 2025 ——— > view name session-start opened ChimeraX session > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > save C:\Users\evc1/Desktop\image2.png supersample 3 > show #!2 models > hide #!1 models > save C:\Users\evc1/Desktop\image2.png supersample 3 > ui mousemode right "mark point" > select :342 36 atoms, 32 bonds, 5 residues, 5 models selected > ui mousemode right "mark point" [Repeated 1 time(s)] > select clear > show #!1 models > hide #!2 models > select #1.1/A:224-225,342-344 #1.2/B:342-344 50 atoms, 47 bonds, 8 residues, 2 models selected > select #1.1/A:270-341,346-410,414-415 #1.2/B:270-341,346-410,414-415 > #5/A:270-341,346-410,414-415 #2/A:270-341,343-407,411-412 4222 atoms, 4324 bonds, 556 residues, 4 models selected > select #1.1/A:224-225,342-344 #1.2/B:342-344 50 atoms, 47 bonds, 8 residues, 2 models selected > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > show #!3 models > show #!4 models > select #3/A:294 7 atoms, 6 bonds, 1 residue, 1 model selected > select #3/A:294-298 45 atoms, 46 bonds, 5 residues, 1 model selected > select #3/A:294-298 #1.1/A:294-298 #1.2/B:294-298 #5/A:294-298 147 atoms, 148 bonds, 20 residues, 4 models selected MatchMaker Alignment [ID: 3] region SantaClara_VEHQ, chain A [294-298] + 1 other block RMSD: 33.112 > select #1.1/A:224-225,342-344 #1.2/B:342-344 #2/A:294-298 90 atoms, 88 bonds, 13 residues, 3 models selected MatchMaker Alignment [ID: 2] region partial missing structure of prototype_8V97, chain A RMSD: 49.603 > select #1.1/A:224-225,294-298,342-344 #1.2/B:294-298,342-344 #2/A:294-298 > #5/A:294-298 192 atoms, 190 bonds, 28 residues, 4 models selected MatchMaker Alignment [ID: 2] region partial missing structure of prototype_8V97, chain A RMSD: 36.383 > select :294-299,368,372-373 411 atoms, 406 bonds, 54 residues, 6 models selected > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > select all 20470 atoms, 20146 bonds, 1 pseudobond, 3401 residues, 8 models selected > mlp sel & #!2-4#!1.1 Map values for surface "new_A SES surface": minimum -28.04, mean -5.29, maximum 22.61 Map values for surface "SantaClara_VEHQ_A SES surface": minimum -28.05, mean -5.403, maximum 22.27 Map values for surface "SantaClara_VENQ_A SES surface": minimum -29.38, mean -5.265, maximum 22.48 Map values for surface "prototype_8V97 A_A SES surface": minimum -28.72, mean -5.694, maximum 22.19 To also show corresponding color key, enter the above mlp command and add key true > color (#!2-4#!1.1 & sel) dim gray > color (#!2-4#!1.1 & sel) light gray > color (#!2-4#!1.1 & sel) gray > select :294-299,368,372-373 411 atoms, 406 bonds, 54 residues, 6 models selected > color (#!2-4#!1.1 & sel) red > select :333,382,389 136 atoms, 121 bonds, 18 residues, 6 models selected > color (#!2-4#!1.1 & sel) orange red > select :339-341,375-378 343 atoms, 332 bonds, 42 residues, 6 models selected > select :333,382,389 136 atoms, 121 bonds, 18 residues, 6 models selected > select :333,382,389 136 atoms, 121 bonds, 18 residues, 6 models selected > select #1.1/A:382 #1.2/B:382 #5/A:382 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:382 #1.2/B:382 #5/A:382 #2/A:379 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [382] RMSD: 30.792 > select #1.1/A:381 #1.2/B:381 #5/A:381 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:381 #1.2/B:381 #5/A:381 #2/A:378 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [381] RMSD: 27.911 > select :333,382,389 136 atoms, 121 bonds, 18 residues, 6 models selected > color (#!2-4#!1.1 & sel) gray > select #1.1/A:381 #1.2/B:381 #5/A:381 #2/A:378 28 atoms, 24 bonds, 4 residues, 4 models selected > color (#!2#!1.1 & sel) orange red > select #1.1/A:270-342,345-411,414 #1.2/B:270-342,345-411,414 > #5/A:270-411,414 #4/A:270-342,346-412,415 4271 atoms, 4376 bonds, 1 pseudobond, 563 residues, 5 models selected > select #3/A:382 7 atoms, 6 bonds, 1 residue, 1 model selected > select #1.1/A:381 #1.2/B:381 #5/A:381 #3/A:382 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [382] RMSD: 27.910 > color (#!3#!1.1 & sel) orange red > select #4/A:382 7 atoms, 6 bonds, 1 residue, 1 model selected > select #1.1/A:381 #1.2/B:381 #5/A:381 #4/A:382 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [382] RMSD: 27.907 > color (#!4#!1.1 & sel) orange red > select :368,372-373 134 atoms, 127 bonds, 18 residues, 6 models selected > select #1.1/A:367 #1.2/B:367 #5/A:367 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:367 #1.2/B:367 #5/A:367 #2/A:364 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [367] RMSD: 35.674 > select :368,372-373 134 atoms, 127 bonds, 18 residues, 6 models selected > color (#!2-4#!1.1 & sel) gray > select #1.1/A:367 #1.2/B:367 #5/A:367 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:367 #1.2/B:367 #5/A:367 #2/A:364 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [367] RMSD: 35.674 > color (#!2#!1.1 & sel) orange > color (#!2#!1.1 & sel) red > select #1.1/A:367 #1.2/B:367 #5/A:367 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:367 #1.2/B:367 #5/A:367 #4/A:368 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [368] RMSD: 35.693 > color (#!4#!1.1 & sel) red > select #1.1/A:367 #1.2/B:367 #5/A:367 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:367 #1.2/B:367 #5/A:367 #3/A:368 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [368] RMSD: 35.688 > color (#!3#!1.1 & sel) red > select :368,372-373 134 atoms, 127 bonds, 18 residues, 6 models selected > select #1.1/A:371 #1.2/B:371 #5/A:371 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:371-372 #1.2/B:371-372 #5/A:371-372 #2/A:368-369 76 atoms, 76 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [371-372] RMSD: 21.371 > color (#!2#!1.1 & sel) red > select #1.1/A:371 #1.2/B:371 #5/A:371 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:371-372 #1.2/B:371-372 #5/A:371-372 #4/A:372-373 76 atoms, 76 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [372-373] RMSD: 21.328 > color (#!4#!1.1 & sel) red > select #1.1/A:371 #1.2/B:371 #5/A:371 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:371-372 #1.2/B:371-372 #5/A:371-372 #3/A:372-373 76 atoms, 76 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [372-373] RMSD: 21.320 > color (#!3#!1.1 & sel) red > select :339-341 168 atoms, 162 bonds, 18 residues, 6 models selected > color (#!2-4#!1.1 & sel) orange > select #1.1/A:373-374 #1.2/B:373-374 #5/A:373-374 30 atoms, 27 bonds, 6 residues, 3 models selected > select #1.1/A:373-375 #1.2/B:373-375 #5/A:373-375 #2/A:370-372 68 atoms, 64 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [373-375] RMSD: 13.055 > select #1.1/A:374 #1.2/B:374 #5/A:374 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:374-376 #1.2/B:374-376 #5/A:374-376 #2/A:371-373 76 atoms, 72 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [374-376] RMSD: 10.465 > color (#!2#!1.1 & sel) orange > select #1.1/A:374-375 #1.2/B:374-375 #5/A:374-375 37 atoms, 34 bonds, 6 residues, 3 models selected > select #1.1/A:374-377 #1.2/B:374-377 #5/A:374-377 #2/A:371-374 104 atoms, 100 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [374-377] RMSD: 11.727 > color (#!2#!1.1 & sel) orange > select #1.1/A:374 #1.2/B:374 #5/A:374 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:374-377 #1.2/B:374-377 #5/A:374-377 #4/A:375-378 105 atoms, 101 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [375-378] RMSD: 11.701 > color (#!4#!1.1 & sel) orange > select #1.1/A:374 #1.2/B:374 #5/A:374 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:374-377 #1.2/B:374-377 #5/A:374-377 #3/A:375-378 105 atoms, 101 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [375-378] RMSD: 11.696 > color (#!3#!1.1 & sel) orange > select #1.1/A:390 #1.2/B:390 #5/A:390 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:390-396 #1.2/B:390-396 #5/A:390-396 #2/A:387-393 202 atoms, 198 bonds, 28 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [390-396] RMSD: 19.332 > color (#!2#!1.1 & sel) yellow > select #1.1/A:390 #1.2/B:390 #5/A:390 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:390-396 #1.2/B:390-396 #5/A:390-396 #4/A:391-397 201 atoms, 197 bonds, 28 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [391-397] RMSD: 19.314 > color (#!4#!1.1 & sel) yellow > select #1.1/A:390 #1.2/B:390 #5/A:390 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:390-396 #1.2/B:390-396 #5/A:390-396 #3/A:391-397 201 atoms, 197 bonds, 28 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [391-397] RMSD: 19.319 > color (#!3#!1.1 & sel) yellow > select #1.1/A:405 #1.2/B:405 #5/A:405 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:405 #1.2/B:405 #5/A:405 #2/A:402 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [405] RMSD: 31.236 > color (#!2#!1.1 & sel) lime > select #1.1/A:405 #1.2/B:405 #5/A:405 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:405 #1.2/B:405 #5/A:405 #4/A:406 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [406] RMSD: 31.241 > color (#!4#!1.1 & sel) lime > select #1.1/A:405 #1.2/B:405 #5/A:405 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:405 #1.2/B:405 #5/A:405 #3/A:406 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [406] RMSD: 31.234 > color (#!3#!1.1 & sel) lime > select #1.1/A:409 #1.2/B:409 #5/A:409 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:409-412 #1.2/B:409-412 #5/A:409-412 #2/A:406-409 112 atoms, 112 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [409-412] RMSD: 39.656 > color (#!2#!1.1 & sel) lime > select #1.1/A:409 #1.2/B:409 #5/A:409 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:409-412 #1.2/B:409-412 #5/A:409-412 #4/A:410-413 106 atoms, 105 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [410-413] RMSD: 39.646 > color (#!4#!1.1 & sel) lime > select #1.1/A:409 #1.2/B:409 #5/A:409 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:409-412 #1.2/B:409-412 #5/A:409-412 #3/A:410-413 106 atoms, 105 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [410-413] RMSD: 39.673 > color (#!3#!1.1 & sel) lime > select :327 42 atoms, 42 bonds, 6 residues, 6 models selected > color (#!2-4#!1.1 & sel) forest green > select #1.1/A:402 #1.2/B:402 #5/A:402 27 atoms, 24 bonds, 3 residues, 3 models selected > select #1.1/A:402 #1.2/B:402 #5/A:402 #2/A:399 36 atoms, 32 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [402] RMSD: 26.934 > color (#!2#!1.1 & sel) forest green > select #1.1/A:402 #1.2/B:402 #5/A:402 27 atoms, 24 bonds, 3 residues, 3 models selected > select #1.1/A:402 #1.2/B:402 #5/A:402 #4/A:403 36 atoms, 32 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [403] RMSD: 26.943 > color (#!4#!1.1 & sel) forest green > select #1.1/A:402 #1.2/B:402 #5/A:402 27 atoms, 24 bonds, 3 residues, 3 models selected > select #1.1/A:402 #1.2/B:402 #5/A:402 #3/A:403 36 atoms, 32 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [403] RMSD: 26.926 > color (#!3#!1.1 & sel) forest green > select #1.1/A:351 #1.2/B:351 #5/A:351 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:351 #1.2/B:351 #5/A:351 #4/A:352 20 atoms, 16 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [352] RMSD: 11.055 > color (#!4#!1.1 & sel) cyan > select #1.1/A:351 #1.2/B:351 #5/A:351 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:351 #1.2/B:351 #5/A:351 #2/A:348 20 atoms, 16 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [351] RMSD: 11.080 > color (#!2#!1.1 & sel) cyan > select #1.1/A:351 #1.2/B:351 #5/A:351 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:351 #1.2/B:351 #5/A:351 #3/A:352 20 atoms, 16 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [352] RMSD: 11.045 > color (#!3#!1.1 & sel) cyan > select #1.1/A:354 #1.2/B:354 #5/A:354 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:354-356 #1.2/B:354-356 #5/A:354-356 #2/A:351-353 79 atoms, 75 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [354-356] RMSD: 14.291 > color (#!2#!1.1 & sel) light sea green > color (#!2#!1.1 & sel) blue > color (#!2#!1.1 & sel) cornflower blue > select #1.1/A:354 #1.2/B:354 #5/A:354 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:354-356 #1.2/B:354-356 #5/A:354-356 #4/A:355-357 77 atoms, 73 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [355-357] RMSD: 14.282 > color (#!4#!1.1 & sel) cornflower blue > select #1.1/A:354 #1.2/B:354 #5/A:354 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:354-356 #1.2/B:354-356 #5/A:354-356 #3/A:355-357 77 atoms, 73 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [355-357] RMSD: 14.287 > color (#!3#!1.1 & sel) cornflower blue > select #1.1/A:358 #1.2/B:358 #5/A:358 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:358 #1.2/B:358 #5/A:358 #4/A:359 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [359] RMSD: 25.070 > select #1.1/A:359 #1.2/B:359 #5/A:359 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:359 #1.2/B:359 #5/A:359 #4/A:360 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [360] RMSD: 29.537 > select #1.1/A:358 #1.2/B:358 #5/A:358 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:358 #1.2/B:358 #5/A:358 #4/A:359 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [359] RMSD: 25.070 > color (#!4#!1.1 & sel) medium blue > select #1.1/A:358 #1.2/B:358 #5/A:358 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:358 #1.2/B:358 #5/A:358 #2/A:355 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [358] RMSD: 25.069 > color (#!2#!1.1 & sel) medium blue > select #1.1/A:358 #1.2/B:358 #5/A:358 #3/A:359 28 atoms, 24 bonds, 4 residues, 4 models selected > select #1.1/A:358 #1.2/B:358 #5/A:358 #3/A:359 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [359] RMSD: 25.070 > color (#!3#!1.1 & sel) medium blue > color (#!3#!1.1 & sel) cornflower blue > select #1.1/A:358 #1.2/B:358 #5/A:358 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:358 #1.2/B:358 #5/A:358 #4/A:359 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [359] RMSD: 25.070 > color (#!4#!1.1 & sel) cornflower blue > select #1.1/A:358 #1.2/B:358 #5/A:358 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:358 #1.2/B:358 #5/A:358 #2/A:355 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [358] RMSD: 25.069 > color (#!2#!1.1 & sel) cornflower blue > select #1.1/A:363 #1.2/B:363 #5/A:363 33 atoms, 33 bonds, 3 residues, 3 models selected > select #1.1/A:363 #1.2/B:363 #5/A:363 #4/A:364 44 atoms, 44 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [364] RMSD: 28.431 > color (#!4#!1.1 & sel) cornflower blue > select #1.1/A:363 #1.2/B:363 #5/A:363 33 atoms, 33 bonds, 3 residues, 3 models selected > select #1.1/A:363 #1.2/B:363 #5/A:363 #2/A:360 44 atoms, 44 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [363] RMSD: 28.432 > color (#!2#!1.1 & sel) cornflower blue [Repeated 1 time(s)] > select #1.1/A:363 #1.2/B:363 #5/A:363 33 atoms, 33 bonds, 3 residues, 3 models selected > select #1.1/A:363 #1.2/B:363 #5/A:363 #3/A:364 44 atoms, 44 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [364] RMSD: 28.439 > color (#!3#!1.1 & sel) cornflower blue > select :309-310 96 atoms, 90 bonds, 12 residues, 6 models selected > color (#!2-4#!1.1 & sel) medium blue > select :333 48 atoms, 42 bonds, 6 residues, 6 models selected > select #1.1/A:381 #1.2/B:381 #5/A:381 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:381 #1.2/B:381 #5/A:381 #2/A:378 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [381] RMSD: 27.911 > select #1.1/A:376 #1.2/B:376 #5/A:376 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:376 #1.2/B:376 #5/A:376 #2/A:373 24 atoms, 20 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [376] RMSD: 9.862 > select #4/A:390-391 14 atoms, 14 bonds, 2 residues, 1 model selected > select #1.1/A:389-394 #1.2/B:389-394 #5/A:389-394 #4/A:390-395 169 atoms, 169 bonds, 24 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [390-395] RMSD: 14.508 > select #4/A:410 5 atoms, 4 bonds, 1 residue, 1 model selected > select #1.1/A:409-412 #1.2/B:409-412 #5/A:409-412 #4/A:410-413 106 atoms, 105 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [410-413] RMSD: 39.646 > select #1.1/A:327 #1.2/B:327 #5/A:327 21 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:327 #1.2/B:327 #5/A:327 #4/A:327 28 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [327] RMSD: 19.935 > select #1.1/A:402 #1.2/B:402 #5/A:402 27 atoms, 24 bonds, 3 residues, 3 models selected > select #1.1/A:402 #1.2/B:402 #5/A:402 #4/A:403 36 atoms, 32 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [403] RMSD: 26.943 > select #1.1/A:354 #1.2/B:354 #5/A:354 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:354-357 #1.2/B:354-357 #5/A:354-357 75 atoms, 72 bonds, 12 residues, 3 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A [354-357] RMSD: 19.201 > select #4/A:355 5 atoms, 4 bonds, 1 residue, 1 model selected > select #4/A:355-357 20 atoms, 19 bonds, 3 residues, 1 model selected > select #4/A:355 5 atoms, 4 bonds, 1 residue, 1 model selected > select #1.1/A:354-356 #1.2/B:354-356 #5/A:354-356 #4/A:355-357 77 atoms, 73 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [355-357] RMSD: 14.282 > color (#!4#!1.1 & sel) cyan > select #1.1/A:354 #1.2/B:354 #5/A:354 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:354-356 #1.2/B:354-356 #5/A:354-356 #2/A:351-353 79 atoms, 75 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [354-356] RMSD: 14.291 > select :354-356 119 atoms, 113 bonds, 18 residues, 6 models selected > select #1.1/A:354 #1.2/B:354 #5/A:354 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:354-356 #1.2/B:354-356 #5/A:354-356 #2/A:351-353 79 atoms, 75 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [354-356] RMSD: 14.291 > color (#!2#!1.1 & sel) cyan > select #1.1/A:354 #1.2/B:354 #5/A:354 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:354-356 #1.2/B:354-356 #5/A:354-356 #3/A:355-357 77 atoms, 73 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [355-357] RMSD: 14.287 > color (#!3#!1.1 & sel) cyan > select #1.1/A:358 #1.2/B:358 #5/A:358 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:358 #1.2/B:358 #5/A:358 #4/A:359 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [359] RMSD: 25.070 > color (#!4#!1.1 & sel) cyan > select #1.1/A:358 #1.2/B:358 #5/A:358 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:358 #1.2/B:358 #5/A:358 #2/A:355 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [358] RMSD: 25.069 > color (#!2#!1.1 & sel) cyan > select #3/A:359 7 atoms, 6 bonds, 1 residue, 1 model selected > select #1.1/A:358 #1.2/B:358 #5/A:358 #3/A:359 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [359] RMSD: 25.070 > color (#!3#!1.1 & sel) cyan > select #1.1/A:363 #1.2/B:363 #5/A:363 33 atoms, 33 bonds, 3 residues, 3 models selected > select #1.1/A:363 #1.2/B:363 #5/A:363 #4/A:364 44 atoms, 44 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [364] RMSD: 28.431 > color (#!4#!1.1 & sel) cyan > select #1.1/A:363 #1.2/B:363 #5/A:363 33 atoms, 33 bonds, 3 residues, 3 models selected > select #1.1/A:363 #1.2/B:363 #5/A:363 #2/A:360 44 atoms, 44 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [363] RMSD: 28.432 > color (#!2#!1.1 & sel) cyan > select #1.1/A:363 #1.2/B:363 #5/A:363 33 atoms, 33 bonds, 3 residues, 3 models selected > select #1.1/A:363 #1.2/B:363 #5/A:363 #3/A:364 44 atoms, 44 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [364] RMSD: 28.439 > color (#!3#!1.1 & sel) cyan > select :309-310 96 atoms, 90 bonds, 12 residues, 6 models selected > color (#!2-4#!1.1 & sel) cornflower blue > select #1.1/A:400 #1.2/B:400 #5/A:400 33 atoms, 33 bonds, 3 residues, 3 models selected > select #1.1/A:400-401 #1.2/B:400-401 #5/A:400-401 #4/A:401-402 77 atoms, 77 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [401-402] RMSD: 28.336 > color (#!4#!1.1 & sel) medium blue > select #1.1/A:400 #1.2/B:400 #5/A:400 33 atoms, 33 bonds, 3 residues, 3 models selected > select #1.1/A:400-401 #1.2/B:400-401 #5/A:400-401 #2/A:397-398 76 atoms, 76 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [400-401] RMSD: 28.360 > color (#!2#!1.1 & sel) medium blue > select #1.1/A:400 #1.2/B:400 #5/A:400 33 atoms, 33 bonds, 3 residues, 3 models selected > select #1.1/A:400-401 #1.2/B:400-401 #5/A:400-401 #3/A:401-402 77 atoms, 77 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [401-402] RMSD: 28.339 > color (#!3#!1.1 & sel) medium blue > select #1.1/A:502 #1.2/B:502 #5/A:502 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:502 #1.2/B:502 #5/A:502 #3/A:503 25 atoms, 21 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [503] RMSD: 46.375 > color (#!3#!1.1 & sel) purple > select #1.1/A:502 #1.2/B:502 #5/A:502 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:502 #1.2/B:502 #5/A:502 #4/A:503 25 atoms, 21 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [503] RMSD: 46.405 > color (#!4#!1.1 & sel) purple > select #1.1/A:502 #1.2/B:502 #5/A:502 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:502 #1.2/B:502 #5/A:502 #2/A:499 24 atoms, 20 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [502] RMSD: 46.423 > color (#!2#!1.1 & sel) purple > select #1.1/A:504 #1.2/B:504 #5/A:504 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:504 #1.2/B:504 #5/A:504 #2/A:501 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [504] RMSD: 40.802 > color (#!2#!1.1 & sel) purple > select #4/A:505 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1.1/A:504 #1.2/B:504 #5/A:504 #4/A:505 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [505] RMSD: 40.805 > color (#!4#!1.1 & sel) purple > select #3/A:505 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1.1/A:503-504 #1.2/B:503-504 #5/A:503-504 #3/A:504-505 48 atoms, 44 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [504-505] RMSD: 42.960 > select #1.1/A:504 #1.2/B:504 #5/A:504 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:504 #1.2/B:504 #5/A:504 #3/A:505 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 3] region prototype_8V97, chain A..SantaClara_VEHQ, chain A [505] RMSD: 40.765 > color (#!3#!1.1 & sel) purple > hide #!4 models > hide #!3 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1.1 models > show #!1.1 models > hide #!2 models > show #!2 models > hide #!2 models > show #1.2 models > hide #1.2 models > hide #1.1.1 models > show #1.1.1 models > show #!2 models > show #1.2 models > hide #1.2 models > save C:/Users/evc1/Downloads/12_3_2025_GII.17_workspace_epitopeColored.cxs > select clear > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > select all 20470 atoms, 20146 bonds, 1 pseudobond, 3401 residues, 8 models selected > transparency 75 > select #4/A:410 5 atoms, 4 bonds, 1 residue, 1 model selected > select #1.1/A:409-412 #1.2/B:409-412 #5/A:409-412 #4/A:410-413 106 atoms, 105 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [410-413] RMSD: 39.646 > select all 20470 atoms, 20146 bonds, 1 pseudobond, 3401 residues, 8 models selected > hide sel & #!2#!1.1 atoms > hide sel & #!2#!1.1 cartoons > show sel & #!2#!1.1 atoms > hide sel & #!2#!1.1 atoms > select #2/A:406 6 atoms, 5 bonds, 1 residue, 1 model selected > select #1.1/A:409-412 #1.2/B:409-412 #5/A:409-412 #2/A:406-409 112 atoms, 112 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [409-412] RMSD: 39.656 > select #1.1/A:401-402 #1.2/B:401-402 #5/A:401-402 51 atoms, 48 bonds, 6 residues, 3 models selected > select #1.1/A:401-420 #1.2/B:401-420 #5/A:401-420 #2/A:398-417 640 atoms, 660 bonds, 80 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [401-420] RMSD: 35.732 > show sel & #!2#!1.1 cartoons > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > select #1.1/A:407 #1.2/B:407 #5/A:407 29 atoms, 26 bonds, 3 residues, 3 models selected > select #1.1/A:407 #1.2/B:407 #5/A:407 #2/A:404 38 atoms, 34 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [407] RMSD: 34.411 > select #1.1/A:406 #1.2/B:406 #5/A:406 21 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:406-408 #1.2/B:406-408 #5/A:406-408 #2/A:403-405 114 atoms, 118 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [406-408] RMSD: 32.500 > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > select #1.1/A:401-402 #1.2/B:401-402 #5/A:401-402 51 atoms, 48 bonds, 6 residues, 3 models selected > select #1.1/A:401-420 #1.2/B:401-420 #5/A:401-420 #2/A:398-417 640 atoms, 660 bonds, 80 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [401-420] RMSD: 35.732 > hide sel & #!2#!1.1 cartoons [Repeated 1 time(s)] > show sel & #!2#!1.1 cartoons > hide sel & #!2#!1.1 cartoons > show sel & #!2#!1.1 atoms > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #2.1 models > hide #1.1.1 models > style sel & #!2#!1.1 ball Changed 322 atom styles > select #1.1/A:406 #1.2/B:406 #5/A:406 21 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:406 #1.2/B:406 #5/A:406 #2/A:403 28 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [406] RMSD: 30.672 > select #1.1/A:407 #1.2/B:407 #5/A:407 29 atoms, 26 bonds, 3 residues, 3 models selected > select #1.1/A:407 #1.2/B:407 #5/A:407 #2/A:404 38 atoms, 34 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [407] RMSD: 34.411 > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > select #1.1/A:270-341,346-410,414-415 #1.2/B:270-341,346-410,414-415 > #5/A:270-341,346-410,414-415 #2/A:270-341,343-407,411-412 4222 atoms, 4324 bonds, 556 residues, 4 models selected > select #2/A:404 9 atoms, 8 bonds, 1 residue, 1 model selected > select #2/A:404 9 atoms, 8 bonds, 1 residue, 1 model selected > select #1.1/A:407 #1.2/B:407 #5/A:407 29 atoms, 26 bonds, 3 residues, 3 models selected > select #1.1/A:407 #1.2/B:407 #5/A:407 29 atoms, 26 bonds, 3 residues, 3 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A [407] RMSD: 39.708 > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > select #1.1/A:401-402 #1.2/B:401-402 #5/A:401-402 51 atoms, 48 bonds, 6 residues, 3 models selected > select #1.1/A:401-420 #1.2/B:401-420 #5/A:401-420 #2/A:398-417 640 atoms, 660 bonds, 80 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [401-420] RMSD: 35.732 > select #1.1/A:404 #1.2/B:404 #5/A:404 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:404 #1.2/B:404 #5/A:404 #2/A:401 22 atoms, 18 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [404] RMSD: 32.904 > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > select #1.1/A:407 #1.2/B:407 #5/A:407 29 atoms, 26 bonds, 3 residues, 3 models selected > select #1.1/A:407 #1.2/B:407 #5/A:407 #2/A:404 38 atoms, 34 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [407] RMSD: 34.411 > show #!1 models > show #1.1.1 models > show #2.1 models > select #1.1/A:407 #1.2/B:407 #5/A:407 29 atoms, 26 bonds, 3 residues, 3 models selected > select #1.1/A:407-412 #1.2/B:407-412 #5/A:407-412 #4/A:408-413 191 atoms, 194 bonds, 24 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [408-413] RMSD: 37.674 > select #1.1/A:401 #1.2/B:401 #5/A:401 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:401-420 #1.2/B:401-420 #5/A:401-420 #2/A:398-417 640 atoms, 660 bonds, 80 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [401-420] RMSD: 35.732 > hide sel & #!2#!1.1 atoms > select #1.1/A:407 #1.2/B:407 #5/A:407 29 atoms, 26 bonds, 3 residues, 3 models selected > select #1.1/A:407-412 #1.2/B:407-412 #5/A:407-412 #2/A:404-409 198 atoms, 202 bonds, 24 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [407-412] RMSD: 37.679 > select #1.1/A:405 #1.2/B:405 #5/A:405 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:405-412 #1.2/B:405-412 #5/A:405-412 #2/A:402-409 258 atoms, 266 bonds, 32 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [405-412] RMSD: 36.116 > show sel & #!2#!1.1 atoms > select #1.1/A:407 #1.2/B:407 #5/A:407 29 atoms, 26 bonds, 3 residues, 3 models selected > select #1.1/A:407 #1.2/B:407 #5/A:407 #2/A:404 38 atoms, 34 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [407] RMSD: 34.411 > select #1.1/A:405 #1.2/B:405 #5/A:405 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:405-406 #1.2/B:405-406 #5/A:405-406 #2/A:402-403 60 atoms, 60 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [405-406] RMSD: 30.955 > hide sel & #!2#!1.1 atoms > select #1.1/A:270-341,346-410,414-415 #1.2/B:270-341,346-410,414-415 > #5/A:270-341,346-410,414-415 #2/A:270-341,343-407,411-412 4222 atoms, 4324 bonds, 556 residues, 4 models selected > select #1.1/A:409 #1.2/B:409 #5/A:409 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:409-412 #1.2/B:409-412 #5/A:409-412 #2/A:406-409 112 atoms, 112 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [409-412] RMSD: 39.656 > hide sel & #!2#!1.1 atoms > show sel & #!2#!1.1 atoms > select #1.1/A:413 #1.2/B:413 #5/A:413 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:413-415 #1.2/B:413-415 #5/A:413-415 #2/A:410-412 92 atoms, 88 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [413-415] RMSD: 41.554 > hide sel & #!2#!1.1 atoms > select #1.1/A:408 #1.2/B:408 #5/A:408 36 atoms, 36 bonds, 3 residues, 3 models selected > select #1.1/A:408 #1.2/B:408 #5/A:408 #2/A:405 48 atoms, 48 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [408] RMSD: 32.308 > hide sel & #!2#!1.1 atoms > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1.1 models > hide #2.1 models > select #1.1/A:407 #1.2/B:407 #5/A:407 29 atoms, 26 bonds, 3 residues, 3 models selected > select #1.1/A:407 #1.2/B:407 #5/A:407 #2/A:404 38 atoms, 34 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [407] RMSD: 34.411 > show #!1.1 models > show #2.1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > show #1.2 models > hide #1.2 models > hide #!2 models > show #!2 models > hide #!2 models > save C:\Users\evc1/Desktop\image2.png supersample 3 > hide #!1 models > show #!2 models > save C:\Users\evc1/Desktop\image3.png supersample 3 > show #!1 models > select #1.1/A:412 #1.2/B:412 #5/A:412 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:412 #1.2/B:412 #5/A:412 #4/A:413 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 4] region prototype_8V97, chain A..SantaClara_VENQ, chain A [413] RMSD: 44.814 > hide #!2 models > select #1.1/A:411 #1.2/B:411 #5/A:411 30 atoms, 30 bonds, 3 residues, 3 models selected > select #1.1/A:411 #1.2/B:411 #5/A:411 #2/A:408 40 atoms, 40 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [411] RMSD: 39.991 > select #1.1/A:408 #1.2/B:408 #5/A:408 36 atoms, 36 bonds, 3 residues, 3 models selected > select #1.1/A:408-409 #1.2/B:408-409 #5/A:408-409 #2/A:405-406 72 atoms, 72 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [408-409] RMSD: 34.499 > select #1.1/A:409 #1.2/B:409 #5/A:409 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:409-410 #1.2/B:409-410 #5/A:409-410 #2/A:406-407 40 atoms, 36 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [409-410] RMSD: 36.619 > select #1.1/A:409 #1.2/B:409 #5/A:409 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:409 #1.2/B:409 #5/A:409 #2/A:406 24 atoms, 20 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [409] RMSD: 36.560 > select #1.1/A:410 #1.2/B:410 #5/A:410 12 atoms, 9 bonds, 3 residues, 3 models selected > select #1.1/A:410 #1.2/B:410 #5/A:410 #2/A:407 16 atoms, 12 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [410] RMSD: 36.679 > select #1.1/A:411 #1.2/B:411 #5/A:411 30 atoms, 30 bonds, 3 residues, 3 models selected > select #1.1/A:411 #1.2/B:411 #5/A:411 #2/A:408 40 atoms, 40 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [411] RMSD: 39.991 > select #1.1/A:410 #1.2/B:410 #5/A:410 12 atoms, 9 bonds, 3 residues, 3 models selected > select #1.1/A:410 #1.2/B:410 #5/A:410 #2/A:407 16 atoms, 12 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [410] RMSD: 36.679 > select #1.1/A:412 #1.2/B:412 #5/A:412 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:412 #1.2/B:412 #5/A:412 #2/A:409 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [412] RMSD: 44.824 > select #1.1/A:410 #1.2/B:410 #5/A:410 12 atoms, 9 bonds, 3 residues, 3 models selected > select #1.1/A:410 #1.2/B:410 #5/A:410 #2/A:407 16 atoms, 12 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [410] RMSD: 36.679 > select #1.1/A:410 #1.2/B:410 #5/A:410 12 atoms, 9 bonds, 3 residues, 3 models selected > select #1.1/A:410 #1.2/B:410 #5/A:410 #2/A:407 16 atoms, 12 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [410] RMSD: 36.679 > select #1.1/A:411 #1.2/B:411 #5/A:411 30 atoms, 30 bonds, 3 residues, 3 models selected > select #1.1/A:411 #1.2/B:411 #5/A:411 #2/A:408 40 atoms, 40 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [411] RMSD: 39.991 > select #1.1/A:410 #1.2/B:410 #5/A:410 12 atoms, 9 bonds, 3 residues, 3 models selected > select #1.1/A:409-410 #1.2/B:409-410 #5/A:409-410 #2/A:406-407 40 atoms, 36 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [409-410] RMSD: 36.619 > select #1.1/A:409 #1.2/B:409 #5/A:409 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:409 #1.2/B:409 #5/A:409 #2/A:406 24 atoms, 20 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [409] RMSD: 36.560 > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > select #1.1/A:409 #1.2/B:409 #5/A:409 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:409-412 #1.2/B:409-412 #5/A:409-412 #2/A:406-409 112 atoms, 112 bonds, 16 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [409-412] RMSD: 39.656 > hide sel & #!2#!1.1 atoms > select #1.1/A:407 #1.2/B:407 #5/A:407 #2/A:404 38 atoms, 34 bonds, 4 residues, 4 models selected > select #1.1/A:407 #1.2/B:407 #5/A:407 #2/A:404 38 atoms, 34 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [407] RMSD: 34.411 > hide sel & #!2#!1.1 atoms > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > select #1.1/A:299 #1.2/B:299 #5/A:299 23 atoms, 20 bonds, 3 residues, 3 models selected > select #1.1/A:299 #1.2/B:299 #5/A:299 #2/A:299 31 atoms, 27 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [299] RMSD: 23.714 > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > select #1.1/A:297 #1.2/B:297 #5/A:297 17 atoms, 14 bonds, 3 residues, 3 models selected > select #1.1/A:297 #1.2/B:297 #5/A:297 #2/A:297 26 atoms, 22 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [297] RMSD: 31.596 > select #1.1/A:295 #1.2/B:295 #5/A:295 22 atoms, 19 bonds, 3 residues, 3 models selected > select #1.1/A:295-299 #1.2/B:295-299 #5/A:295-299 #2/A:295-299 145 atoms, 146 bonds, 20 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [295-299] RMSD: 27.583 > show sel & #!2#!1.1 atoms > style sel & #!2#!1.1 ball Changed 77 atom styles > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #2.1 models > hide #1.1.1 models > show #1.1.1 models > hide #1.1.1 models > show #1.1.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > hide #1.1.1 models > show #1.1.1 models > show #2.1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > save C:/Users/evc1/Downloads/12_3_2025_GII.17_workspace_epitopeColored.cxs ——— End of log from Thu Dec 4 10:11:43 2025 ——— > view name session-start opened ChimeraX session > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > select #1.1/A:361-362 #1.2/B:361-362 #5/A:361-362 44 atoms, 41 bonds, 6 residues, 3 models selected > select #1.1/A:361-368 #1.2/B:361-368 #5/A:361-368 #2/A:358-365 244 atoms, 248 bonds, 32 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [361-368] RMSD: 31.765 > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > select #1.1/A:361 #1.2/B:361 #5/A:361 17 atoms, 14 bonds, 3 residues, 3 models selected > select #1.1/A:361-366 #1.2/B:361-366 #5/A:361-366 #2/A:358-363 196 atoms, 200 bonds, 24 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [361-366] RMSD: 31.029 > select #1.1/A:367 #1.2/B:367 #5/A:367 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:367-368 #1.2/B:367-368 #5/A:367-368 #2/A:364-365 48 atoms, 44 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [367-368] RMSD: 33.877 > select #1.1/A:358 #1.2/B:358 #5/A:358 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:358-362 #1.2/B:358-362 #5/A:358-362 #2/A:355-359 140 atoms, 136 bonds, 20 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [358-362] RMSD: 29.738 > select #1.1/A:361 #1.2/B:361 #5/A:361 17 atoms, 14 bonds, 3 residues, 3 models selected > select #1.1/A:361 #1.2/B:361 #5/A:361 #2/A:358 24 atoms, 20 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [361] RMSD: 33.632 > select #1.1/A:356 #1.2/B:356 #5/A:356 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:356 #1.2/B:356 #5/A:356 #2/A:353 29 atoms, 25 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [356] RMSD: 17.947 > select #1.1/A:370 #1.2/B:370 #5/A:370 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:370 #1.2/B:370 #5/A:370 #2/A:367 29 atoms, 25 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [370] RMSD: 25.553 > select #1.1/A:361-380 #1.2/B:361-380 #5/A:361-380 #2/A:358-377 605 atoms, 617 bonds, 80 residues, 4 models selected > select #1.1/A:361-380 #1.2/B:361-380 #5/A:361-380 #2/A:358-377 605 atoms, 617 bonds, 80 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [361-380] RMSD: 25.016 > select #1.1/A:382 #1.2/B:382 #5/A:382 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:382-383 #1.2/B:382-383 #5/A:382-383 #2/A:379-380 68 atoms, 64 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [382-383] RMSD: 29.073 > show #!2 models > select #1.1/A:382 #1.2/B:382 #5/A:382 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:382 #1.2/B:382 #5/A:382 #2/A:379 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [382] RMSD: 30.792 > select #1.1/A:361 #1.2/B:361 #5/A:361 17 atoms, 14 bonds, 3 residues, 3 models selected > select #1.1/A:361 #1.2/B:361 #5/A:361 #2/A:358 24 atoms, 20 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [361] RMSD: 33.632 > select #1.1/A:375 #1.2/B:375 #5/A:375 19 atoms, 16 bonds, 3 residues, 3 models selected > select #1.1/A:375 #1.2/B:375 #5/A:375 #2/A:372 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [375] RMSD: 9.264 > select #1.1/A:370 #1.2/B:370 #5/A:370 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:370 #1.2/B:370 #5/A:370 #2/A:367 29 atoms, 25 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [370] RMSD: 25.553 > select #1.1/A:356 #1.2/B:356 #5/A:356 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:356 #1.2/B:356 #5/A:356 #2/A:353 29 atoms, 25 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [356] RMSD: 17.947 > select #1.1/A:361 #1.2/B:361 #5/A:361 17 atoms, 14 bonds, 3 residues, 3 models selected > select #1.1/A:361 #1.2/B:361 #5/A:361 #2/A:358 24 atoms, 20 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [361] RMSD: 33.632 > style sel & #!2#!1.1 ball Changed 13 atom styles > show sel & #!2#!1.1 atoms > select #1.1/A:354 #1.2/B:354 #5/A:354 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:354 #1.2/B:354 #5/A:354 #2/A:351 22 atoms, 18 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [354] RMSD: 10.010 > select #1.1/A:360 #1.2/B:360 #5/A:360 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:360 #1.2/B:360 #5/A:360 #2/A:357 24 atoms, 20 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [360] RMSD: 29.238 > select #1.1/A:361 #1.2/B:361 #5/A:361 17 atoms, 14 bonds, 3 residues, 3 models selected > select #1.1/A:361 #1.2/B:361 #5/A:361 #2/A:358 24 atoms, 20 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [361] RMSD: 33.632 > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > select #1.1/A:362 #1.2/B:362 #5/A:362 27 atoms, 24 bonds, 3 residues, 3 models selected > select #1.1/A:362 #1.2/B:362 #5/A:362 #2/A:359 36 atoms, 32 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [362] RMSD: 30.565 > select #1.1/A:357 #1.2/B:357 #5/A:357 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:357-364 #1.2/B:357-364 #5/A:357-364 #2/A:354-361 236 atoms, 236 bonds, 32 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [357-364] RMSD: 29.009 > show sel & #!2#!1.1 atoms > hide sel & #!2#!1.1 atoms > select #1.1/A:356 #1.2/B:356 #5/A:356 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:354-356 #1.2/B:354-356 #5/A:354-356 #2/A:351-353 79 atoms, 75 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [354-356] RMSD: 14.291 > show sel & #!2#!1.1 atoms > hide sel & #!2#!1.1 atoms > select #1.1/A:297 #1.2/B:297 #5/A:297 17 atoms, 14 bonds, 3 residues, 3 models selected > select #1.1/A:297 #1.2/B:297 #5/A:297 #2/A:297 26 atoms, 22 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [297] RMSD: 31.596 > select #1.1/A:295 #1.2/B:295 #5/A:295 22 atoms, 19 bonds, 3 residues, 3 models selected > select #1.1/A:295 #1.2/B:295 #5/A:295 #2/A:295 32 atoms, 29 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [295] RMSD: 25.607 > select #1.1/A:299 #1.2/B:299 #5/A:299 23 atoms, 20 bonds, 3 residues, 3 models selected > select #1.1/A:299 #1.2/B:299 #5/A:299 #2/A:299 31 atoms, 27 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [299] RMSD: 23.714 > select #1.1/A:294 #1.2/B:294 #5/A:294 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:294 #1.2/B:294 #5/A:294 #2/A:294 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [294] RMSD: 28.988 > show sel & #!2#!1.1 atoms > hide sel & #!2#!1.1 atoms > show sel & #!2#!1.1 atoms > hide sel & #!2#!1.1 atoms > select #1.1/A:356 #1.2/B:356 #5/A:356 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:356 #1.2/B:356 #5/A:356 #2/A:353 29 atoms, 25 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [356] RMSD: 17.947 > select #1.1/A:359 #1.2/B:359 #5/A:359 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:359 #1.2/B:359 #5/A:359 #2/A:356 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [359] RMSD: 29.549 > select #1.1/A:356 #1.2/B:356 #5/A:356 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:356 #1.2/B:356 #5/A:356 #2/A:353 29 atoms, 25 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [356] RMSD: 17.947 > select #1.1/A:357 #1.2/B:357 #5/A:357 18 atoms, 15 bonds, 3 residues, 3 models selected > select #1.1/A:357 #1.2/B:357 #5/A:357 #2/A:354 24 atoms, 20 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [357] RMSD: 22.258 > select #1.1/A:358 #1.2/B:358 #5/A:358 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:358 #1.2/B:358 #5/A:358 #2/A:355 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [358] RMSD: 25.069 > select #1.1/A:354 #1.2/B:354 #5/A:354 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:354 #1.2/B:354 #5/A:354 #2/A:351 22 atoms, 18 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [354] RMSD: 10.010 > select #1.1/A:355 #1.2/B:355 #5/A:355 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:355 #1.2/B:355 #5/A:355 #2/A:352 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [355] RMSD: 13.799 > select #1.1/A:355 #1.2/B:355 #5/A:355 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:355-360 #1.2/B:355-360 #5/A:355-360 #2/A:352-357 161 atoms, 157 bonds, 24 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [355-360] RMSD: 23.680 > show sel & #!2#!1.1 atoms > hide sel & #!2#!1.1 atoms > show sel & #!2#!1.1 atoms > select #1.1/A:361 #1.2/B:361 #5/A:361 17 atoms, 14 bonds, 3 residues, 3 models selected > select #1.1/A:361-365 #1.2/B:361-365 #5/A:361-365 119 atoms, 122 bonds, 15 residues, 3 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A [361-365] RMSD: 35.349 > undo > select #1.1/A:356 #1.2/B:356 #5/A:356 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:356-360 #1.2/B:356-360 #5/A:356-360 #2/A:353-357 133 atoms, 129 bonds, 20 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [356-360] RMSD: 25.195 > hide sel & #!2#!1.1 atoms > select #1.1/A:355 #1.2/B:355 #5/A:355 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:355 #1.2/B:355 #5/A:355 #2/A:352 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [355] RMSD: 13.799 > hide sel & #!2#!1.1 atoms > select #1.1/A:354 #1.2/B:354 #5/A:354 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:354 #1.2/B:354 #5/A:354 #2/A:351 22 atoms, 18 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [354] RMSD: 10.010 > hide sel & #!2#!1.1 atoms > select #1.1/A:361 #1.2/B:361 #5/A:361 17 atoms, 14 bonds, 3 residues, 3 models selected > select #1.1/A:361-365 #1.2/B:361-365 #5/A:361-365 #2/A:358-362 160 atoms, 164 bonds, 20 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [361-365] RMSD: 30.668 > show sel & #!2#!1.1 atoms > style sel & #!2#!1.1 ball Changed 81 atom styles > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide sel & #!2#!1.1 atoms > select #1.1/A:356 #1.2/B:356 #5/A:356 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:356-365 #1.2/B:356-365 #5/A:356-365 #2/A:353-362 293 atoms, 297 bonds, 40 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [356-365] RMSD: 28.065 > show sel & #!2#!1.1 atoms > hide sel & #!2#!1.1 cartoons > hide sel & #!2#!1.1 atoms > select #1.1/A:298 #1.2/B:298 #5/A:298 30 atoms, 30 bonds, 3 residues, 3 models selected > select #1.1/A:298-303 #1.2/B:298-303 #5/A:298-303 #2/A:298-303 243 atoms, 255 bonds, 24 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [298-303] RMSD: 24.477 > show sel & #!2#!1.1 atoms > hide sel & #!2#!1.1 atoms > show sel & #!2#!1.1 atoms > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > select #1.1/A:301 #1.2/B:301 #5/A:301 33 atoms, 30 bonds, 3 residues, 3 models selected > select #1.1/A:301-303 #1.2/B:301-303 #5/A:301-303 #2/A:301-303 140 atoms, 148 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [301-303] RMSD: 24.043 > hide sel & #!2#!1.1 atoms > select #1.1/A:304 #1.2/B:304 #5/A:304 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:304 #1.2/B:304 #5/A:304 #2/A:304 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [304] RMSD: 25.015 > select #1.1/A:299 #1.2/B:299 #5/A:299 23 atoms, 20 bonds, 3 residues, 3 models selected > select #1.1/A:299 #1.2/B:299 #5/A:299 #2/A:299 31 atoms, 27 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [299] RMSD: 23.714 > select #1.1/A:298 #1.2/B:298 #5/A:298 30 atoms, 30 bonds, 3 residues, 3 models selected > select #1.1/A:298 #1.2/B:298 #5/A:298 #2/A:298 40 atoms, 40 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [298] RMSD: 28.354 > select #1.1/A:294 #1.2/B:294 #5/A:294 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:294 #1.2/B:294 #5/A:294 #2/A:294 28 atoms, 24 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [294] RMSD: 28.988 > select #1.1/A:293 #1.2/B:293 #5/A:293 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:293 #1.2/B:293 #5/A:293 #2/A:293 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [293] RMSD: 27.173 > select #1.1/A:292 #1.2/B:292 #5/A:292 15 atoms, 12 bonds, 3 residues, 3 models selected > select #1.1/A:292 #1.2/B:292 #5/A:292 #2/A:292 20 atoms, 16 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [292] RMSD: 30.452 > select #1.1/A:300 #1.2/B:300 #5/A:300 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:300 #1.2/B:300 #5/A:300 #2/A:300 32 atoms, 28 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [300] RMSD: 22.235 > hide sel & #!2#!1.1 atoms > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > select #1.1/A:304-305 #1.2/B:304-305 #5/A:304-305 51 atoms, 48 bonds, 6 residues, 3 models selected > select #1.1/A:304-305 #1.2/B:304-305 #5/A:304-305 #2/A:304-305 68 atoms, 64 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [304-305] RMSD: 27.053 > select #1.1/A:313 #1.2/B:313 #5/A:313 21 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:313-315 #1.2/B:313-315 #5/A:313-315 #2/A:313-315 104 atoms, 108 bonds, 12 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [313-315] RMSD: 33.152 > select #1.1/A:304 #1.2/B:304 #5/A:304 24 atoms, 21 bonds, 3 residues, 3 models selected > select #1.1/A:304-305 #1.2/B:304-305 #5/A:304-305 #2/A:304-305 68 atoms, 64 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [304-305] RMSD: 27.053 > select #1.1/A:307 #1.2/B:307 #5/A:307 21 atoms, 18 bonds, 3 residues, 3 models selected > select #1.1/A:307-308 #1.2/B:307-308 #5/A:307-308 #2/A:307-308 60 atoms, 56 bonds, 8 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [307-308] RMSD: 25.590 > select :307-400 4172 atoms, 4278 bonds, 1 pseudobond, 561 residues, 7 models selected > hide sel & #!2#!1.1 surfaces > show sel & #!2#!1.1 surfaces > select :307-500 8882 atoms, 9136 bonds, 1 pseudobond, 1161 residues, 7 models selected > hide sel & #!2#!1.1 surfaces > select :240-290 2304 atoms, 2333 bonds, 306 residues, 6 models selected > hide sel & #!2#!1.1 surfaces > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > save C:\Users\evc1/Desktop\image2.png supersample 3 > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > select :295,299 97 atoms, 86 bonds, 12 residues, 6 models selected > color (#!2 & sel) light sea green > save C:\Users\evc1/Desktop\image3.png supersample 3 > show #!1 models > hide #!2 models > select :295,299 97 atoms, 86 bonds, 12 residues, 6 models selected > show #!2 models > hide #!1 models > select :295 50 atoms, 45 bonds, 6 residues, 6 models selected > color (#!2 & sel) forest green > color (#!2 & sel) #aaff7fff > color (#!2 & sel) #55ff00ff > color (#!2 & sel) #aaff7fff > transparency 75 > select clear > save C:\Users\evc1/Desktop\image3.png supersample 3 > show #!1 models > hide #!2 models > select :299 47 atoms, 41 bonds, 6 residues, 6 models selected > select clear > save C:\Users\evc1/Desktop\image3.png supersample 3 > select #1.1/A:270-341,346-410,414-415 #1.2/B:270-341,346-410,414-415 > #5/A:270-341,346-410,414-415 #2/A:270-341,343-407,411-412 4222 atoms, 4324 bonds, 556 residues, 4 models selected > select #1.1/A:299 #1.2/B:299 #5/A:299 23 atoms, 20 bonds, 3 residues, 3 models selected > select #1.1/A:299 #1.2/B:299 #5/A:299 #2/A:299 31 atoms, 27 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [299] RMSD: 23.714 > select all 20470 atoms, 20146 bonds, 1 pseudobond, 3401 residues, 8 models selected > show sel & #!1.1 surfaces > hide sel & #!1.1 atoms > show #!2 models > show #!3 models > show #!4 models > hide sel & #!2-4#!1.1 cartoons > hide sel & #!2-4#!1.1 atoms > show sel & #!2-4#!1.1 surfaces [Repeated 1 time(s)] > hide #!3 models > hide #!4 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > hide #!1 models > show #!1 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > select #1.1/A:511 #1.2/B:511 #5/A:511 17 atoms, 14 bonds, 3 residues, 3 models selected > select #1.1/A:511 #1.2/B:511 #5/A:511 #2/A:508 22 atoms, 18 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [511] RMSD: 27.948 > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > select #1.1/A:494 #1.2/B:494 #5/A:494 Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 112, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\triggerset.py", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 354, in _command_started_cb self.history_dialog.add(self._just_typed_command or cmd_text, File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 463, in add self._history.enqueue((item, typed)) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 182, in enqueue self.save() File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 212, in save self._history.save(self._queue) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 119, in save with SaveTextFile(self._filename) as f: File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. 19 atoms, 16 bonds, 3 residues, 3 models selected > select #1.1/A:494 #1.2/B:494 #5/A:494 #2/A:491 Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 112, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\triggerset.py", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 354, in _command_started_cb self.history_dialog.add(self._just_typed_command or cmd_text, File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 463, in add self._history.enqueue((item, typed)) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 182, in enqueue self.save() File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 212, in save self._history.save(self._queue) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 119, in save with SaveTextFile(self._filename) as f: File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. 25 atoms, 21 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [494] RMSD: 27.536 > select #1.1/A:494 #1.2/B:494 #5/A:494 #2/A:491 Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 112, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\triggerset.py", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 354, in _command_started_cb self.history_dialog.add(self._just_typed_command or cmd_text, File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 463, in add self._history.enqueue((item, typed)) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 182, in enqueue self.save() File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 212, in save self._history.save(self._queue) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 119, in save with SaveTextFile(self._filename) as f: File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. 25 atoms, 21 bonds, 4 residues, 4 models selected > select #1.1/A:494 #1.2/B:494 #5/A:494 #2/A:491 Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 112, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\triggerset.py", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 354, in _command_started_cb self.history_dialog.add(self._just_typed_command or cmd_text, File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 463, in add self._history.enqueue((item, typed)) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 182, in enqueue self.save() File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 212, in save self._history.save(self._queue) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 119, in save with SaveTextFile(self._filename) as f: File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. 25 atoms, 21 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [494] RMSD: 27.536 > select #1.1/A:495-496 #1.2/B:495-496 #5/A:495-496 Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 112, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\triggerset.py", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 354, in _command_started_cb self.history_dialog.add(self._just_typed_command or cmd_text, File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 463, in add self._history.enqueue((item, typed)) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 182, in enqueue self.save() File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 212, in save self._history.save(self._queue) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 119, in save with SaveTextFile(self._filename) as f: File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. 48 atoms, 48 bonds, 6 residues, 3 models selected > select #1.1/A:495 #1.2/B:495 #5/A:495 #2/A:492 Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 112, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\triggerset.py", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 354, in _command_started_cb self.history_dialog.add(self._just_typed_command or cmd_text, File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\cmd_line\tool.py", line 463, in add self._history.enqueue((item, typed)) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 182, in enqueue self.save() File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 212, in save self._history.save(self._queue) File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\history.py", line 119, in save with SaveTextFile(self._filename) as f: File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' Error processing trigger "command started": PermissionError: [WinError 5] Access is denied: 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands.17820.1764852553.6771607.tmp' -> 'C:\\\Users\\\evc1\\\AppData\\\Local\\\UCSF\\\ChimeraX\\\commands' File "C:\Users\evc1\OneDrive - CDC\Apps\ChimeraX_1.11\bin\Lib\site- packages\chimerax\core\safesave.py", line 122, in __exit__ os.replace(self._tmp_filename, self.name) See log for complete Python traceback. 16 atoms, 12 bonds, 4 residues, 4 models selected MatchMaker Alignment [ID: 2] region prototype_8V97, chain A..new, chain A [495] RMSD: 23.680 OpenGL version: 3.3.0 - Build 31.0.101.2114 OpenGL renderer: Intel(R) UHD Graphics 630 OpenGL vendor: Intel Python: 3.11.9 Locale: en_US.cp1252 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: windows Manufacturer: Dell Inc. Model: OptiPlex 7060 OS: Microsoft Windows 11 Enterprise (Build 26100) Memory: 16,966,090,752 MaxProcessMemory: 137,438,953,344 CPU: 12 Intel(R) Core(TM) i7-8700 CPU @ 3.20GHz OSLanguage: en-US Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.0 appdirs: 1.4.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.11.1 build: 1.3.0 certifi: 2025.11.12 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11rc202512020129 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.2 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.11 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.49.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 comtypes: 1.4.11 contourpy: 1.3.3 coverage: 7.12.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.17 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.0 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.25.1 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 nvidia-nvjitlink-cu12: 12.9.86 OpenMM: 8.2.0 OpenMM-CUDA-12: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.2.5 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.1 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.20 pytz: 2025.2 pywin32: 311 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals-py: 3.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.0.3 stack-data: 0.6.3 starlette: 0.50.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.2 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 tzdata: 2025.2 urllib3: 2.5.0 uvicorn: 0.38.0 wcwidth: 0.2.14 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 WMI: 1.5.1 yarl: 1.22.0
#19476	can't reproduce	Crash in Qt 6.9 event loop processing geometry change, QDockWidget.event()	Tom Goddard	chimerax-bug-report@…
Description	The following bug report has been submitted: Platform: macOS-15.4.1-arm64-arm-64bit ChimeraX Version: 1.11rc202512030952 (2025-12-03 09:52:55 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x000000032b977000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 331 in wait File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 629 in wait File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1399 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x00000003130f7000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x00000003120eb000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x00000003110df000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 948 in wait File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x00000003100d3000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x000000030f0c7000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x000000030e0bb000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x000000030d0af000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x000000030c0a3000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x000000030b097000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x000000030a08b000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Thread 0x000000030907f000 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap Current thread 0x00000001f6260c80 (most recent call first): File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 414 in event_loop File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1064 in init File "/Applications/ChimeraX-1.11-rc2025.12.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1229 in File "", line 88 in _run_code File "", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, psutil._psutil_osx, psutil._psutil_posix, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, PIL._imaging, chimerax.surface._surface, chimerax.pdb_lib._load_libs, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, 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All rights reserved. How to cite UCSF ChimeraX > open > /Users/hiroshi/Desktop/AF3/fold_a_tubulin_map6/fold_a_tubulin_map6_model_0.cif Chain information for fold_a_tubulin_map6_model_0.cif #1 --- Chain \| Description A \| . B \| . Computing secondary structure > color bychain > color bfactor 6858 atoms, 890 residues, atom bfactor range 13 to 97.3 > sequence chain #1/A Alignment identifier is 1/A > sequence chain #1/B Alignment identifier is 1/B > select /B:113 7 atoms, 6 bonds, 1 residue, 1 model selected > select /B:63-113 335 atoms, 342 bonds, 51 residues, 1 model selected > select /B:113-114 13 atoms, 12 bonds, 2 residues, 1 model selected > select /B:114-157 367 atoms, 378 bonds, 44 residues, 1 model selected > select /B:162-163 19 atoms, 20 bonds, 2 residues, 1 model selected > select /B:162-216 433 atoms, 448 bonds, 55 residues, 1 model selected > select /B:161 11 atoms, 10 bonds, 1 residue, 1 model selected > select /B:160-161 22 atoms, 22 bonds, 2 residues, 1 model selected > select > /A:10-28,47-51,73-80,82-85,89-91,103-108,111-113,116-128,144-160,183-194,206-216,224-242,252-259,278-281,288-296,298-300,307-309,325-338,382-401,405-407,409-411,415-436 1654 atoms, 1664 bonds, 209 residues, 1 model selected > select /B:12-60 378 atoms, 394 bonds, 49 residues, 1 model selected > select /B:12-55 346 atoms, 360 bonds, 44 residues, 1 model selected > select /A:100 5 atoms, 4 bonds, 1 residue, 1 model selected > select /A:100-146 359 atoms, 365 bonds, 47 residues, 1 model selected > ui tool show "AlphaFold Error Plot" > alphafold pae #1 file > /Users/hiroshi/Desktop/AF3/fold_a_tubulin_map6/fold_a_tubulin_map6_full_data_0.json ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11rc202512030952 (2025-12-03) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Model Identifier: iMac21,1 Model Number: Z12X000QWJ/A Chip: Apple M1 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 11881.101.1 OS Loader Version: 11881.101.1 Software: System Software Overview: System Version: macOS 15.4.1 (24E263) Kernel Version: Darwin 24.4.0 Time since boot: 3日 22分 Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: iMac: Display Type: Built-In Retina LCD Resolution: Retina 4.5K (4480 x 2520) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 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0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.25.1 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.2.5 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.1 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.20 pytz: 2025.2 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals-py: 3.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.0.3 stack-data: 0.6.3 starlette: 0.50.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.2 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 tzdata: 2025.2 urllib3: 2.5.0 uvicorn: 0.38.0 wcwidth: 0.2.14 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0

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Query Language

query: TracLinks and the [[TicketQuery]] macro both use a mini “query language” for specifying query filters. Filters are separated by ampersands (&). Each filter consists of the ticket field name, an operator and one or more values. More than one value are separated by a pipe (|), meaning that the filter matches any of the values. To include a literal & or | in a value, escape the character with a backslash (\).

The available operators are:

`=`	the field content exactly matches one of the values
`~=`	the field content contains one or more of the values
`^=`	the field content starts with one of the values
`$=`	the field content ends with one of the values

All of these operators can also be negated:

`!=`	the field content matches none of the values
`!~=`	the field content does not contain any of the values
`!^=`	the field content does not start with any of the values
`!$=`	the field content does not end with any of the values

The date fields created and modified can be constrained by using the = operator and specifying a value containing two dates separated by two dots (..). Either end of the date range can be left empty, meaning that the corresponding end of the range is open. The date parser understands a few natural date specifications like "3 weeks ago", "last month" and "now", as well as Bugzilla-style date specifications like "1d", "2w", "3m" or "4y" for 1 day, 2 weeks, 3 months and 4 years, respectively. Spaces in date specifications can be omitted to avoid having to quote the query string.

`created=2007-01-01..2008-01-01`	query tickets created in 2007
`created=lastmonth..thismonth`	query tickets created during the previous month
`modified=1weekago..`	query tickets that have been modified in the last week
`modified=..30daysago`	query tickets that have been inactive for the last 30 days

See also: TracTickets, TracReports, TracGuide, TicketQuery

Note: See TracWiki for help on using the wiki.

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Query Language

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