Context Navigation

← Previous Version
View Latest Version
Next Version →

Version 1 (modified by trac, 12 years ago) ( diff )
--

Trac Ticket Queries

In addition to reports, Trac provides support for custom ticket queries, used to display lists of tickets meeting a specified set of criteria.

To configure and execute a custom query, switch to the View Tickets module from the navigation bar, and select the Custom Query link.

Filters

When you first go to the query page the default filter will display tickets relevant to you:

If logged in then all open tickets it will display open tickets assigned to you.
If not logged in but you have specified a name or email address in the preferences then it will display all open tickets where your email (or name if email not defined) is in the CC list.
If not logged and no name/email defined in the preferences then all open issues are displayed.

Current filters can be removed by clicking the button to the left with the minus sign on the label. New filters are added from the pulldown lists at the bottom corners of the filters box ('And' conditions on the left, 'Or' conditions on the right). Filters with either a text box or a pulldown menu of options can be added multiple times to perform an or of the criteria.

You can use the fields just below the filters box to group the results based on a field, or display the full description for each ticket.

Once you've edited your filters click the Update button to refresh your results.

Navigating Tickets

Clicking on one of the query results will take you to that ticket. You can navigate through the results by clicking the Next Ticket or Previous Ticket links just below the main menu bar, or click the Back to Query link to return to the query page.

You can safely edit any of the tickets and continue to navigate through the results using the Next/Previous/Back to Query links after saving your results. When you return to the query any tickets which were edited will be displayed with italicized text. If one of the tickets was edited such that it no longer matches the query criteria the text will also be greyed. Lastly, if a new ticket matching the query criteria has been created, it will be shown in bold.

The query results can be refreshed and cleared of these status indicators by clicking the Update button again.

Saving Queries

Trac allows you to save the query as a named query accessible from the reports module. To save a query ensure that you have Updated the view and then click the Save query button displayed beneath the results. You can also save references to queries in Wiki content, as described below.

Note: one way to easily build queries like the ones below, you can build and test the queries in the Custom report module and when ready - click Save query. This will build the query string for you. All you need to do is remove the extra line breaks.

Note: you must have the REPORT_CREATE permission in order to save queries to the list of default reports. The Save query button will only appear if you are logged in as a user that has been granted this permission. If your account does not have permission to create reports, you can still use the methods below to save a query.

Using TracLinks

You may want to save some queries so that you can come back to them later. You can do this by making a link to the query from any Wiki page.

[query:status=new|assigned|reopened&version=1.0 Active tickets against 1.0]

Which is displayed as:

Active tickets against 1.0

This uses a very simple query language to specify the criteria (see Query Language).

Alternatively, you can copy the query string of a query and paste that into the Wiki link, including the leading ? character:

[query:?status=new&status=assigned&status=reopened&group=owner Assigned tickets by owner]

Which is displayed as:

Assigned tickets by owner

Using the `[[TicketQuery]]` Macro

The TicketQuery macro lets you display lists of tickets matching certain criteria anywhere you can use WikiFormatting.

Example:

[[TicketQuery(version=0.6|0.7&resolution=duplicate)]]

This is displayed as:

#1317
ChimeraX bug report submission
#1558
Apparent infinite recursion of find_close_points_boxes
#1586
Seq Viewer: unproved enter() call on region browser

Just like the query: wiki links, the parameter of this macro expects a query string formatted according to the rules of the simple ticket query language. This also allows displaying the link and description of a single ticket:

[[TicketQuery(id=123)]]

This is displayed as:

#123
Crash in num_chains for 4v6w.cif

A more compact representation without the ticket summaries is also available:

[[TicketQuery(version=0.6|0.7&resolution=duplicate, compact)]]

This is displayed as:

#1317, #1558, #1586

Finally, if you wish to receive only the number of defects that match the query, use the count parameter.

[[TicketQuery(version=0.6|0.7&resolution=duplicate, count)]]

This is displayed as:

3

Customizing the table format

You can also customize the columns displayed in the table format (format=table) by using col=<field> - you can specify multiple fields and what order they are displayed by placing pipes (|) between the columns like below:

[[TicketQuery(max=3,status=closed,order=id,desc=1,format=table,col=resolution|summary|owner|reporter)]]

This is displayed as:

Results (1 - 3 of 13830)

1 2 3 4 5 6 7 8 9 10 11 →


Ticket	Resolution	Summary	Owner	Reporter
#20311	can't reproduce	Match→Align associating to alignment: numpy error	Eric Pettersen	chimerax-bug-report@…
#20310	duplicate	Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged	Tom Goddard	chimerax-bug-report@…
#20309	can't reproduce	UnicodeDecodeError reading PDB file	Eric Pettersen	chimerax-bug-report@…

1 2 3 4 5 6 7 8 9 10 11 →

Full rows

In table format you can also have full rows by using rows=<field> like below:

[[TicketQuery(max=3,status=closed,order=id,desc=1,format=table,col=resolution|summary|owner|reporter,rows=description)]]

This is displayed as:

Results (1 - 3 of 13830)

1 2 3 4 5 6 7 8 9 10 11 →


Ticket	Resolution	Summary	Owner	Reporter
#20311	can't reproduce	Match→Align associating to alignment: numpy error	Eric Pettersen	chimerax-bug-report@…
Description	The following bug report has been submitted: Platform: macOS-14.8.3-x86_64-i386-64bit ChimeraX Version: 1.12rc202605070126 (2026-05-07 01:26:37 UTC) Description ui tool show Match→Align msa3d #2/A#3/A Match→Align cutoff: 5.0, in column if within cutoff of: any 82 residue pairs aligned 110 fully populated columns Pairwise RMSDs across all fully populated columns Model 2 3 2 0.000 28.811 3 28.811 0.000 Overall RMSD: 28.811 Sequence lengths: 110 522 SDM (cutoff 5.0): -247.145 Q-score: 0.002 Alignment identifier is MA-1 Showing conservation header ("seq_clustal_conservation" residue attribute) for alignment MA-1 Traceback (most recent call last): File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/match_align/tool.py", line 259, in match_align run(self.session, "msa3d " + ' '.join(args)) File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 3245, in run result = ci.function(session, *kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/match_align/cmd.py", line 225, in make_alignment alignment.associate(orig, seq=aligned, silent=True) File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/alignment.py", line 386, in associate do_assoc() File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/alignment.py", line 305, in do_assoc self.prematched_assoc_structure(best_match_map, best_errors, reassoc) File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/alignment.py", line 742, in prematched_assoc_structure self._set_residue_attributes(match_maps=[match_map]) File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/alignment.py", line 1071, in _set_residue_attributes values = [100.0 self.most_common(col)[1] / num_seqs for col in range(len(self._seqs[0]))] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/alignment.py", line 1071, in <listcomp> values = [100.0 * self.most_common(col)[1] / num_seqs for col in range(len(self._seqs[0]))] ^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/alignment.py", line 691, in most_common chars, counts = self.column_counts()[col_index] ^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/alignment.py", line 485, in column_counts data = numpy.array([list(seq.characters) for seq in self._seqs]) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (2,) + inhomogeneous part. ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (2,) + inhomogeneous part. File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/alignment.py", line 485, in column_counts data = numpy.array([list(seq.characters) for seq in self._seqs]) Log: UCSF ChimeraX version: 1.12rc202605070126 (2026-05-07) © 2016-2026 Regents of the University of California. All rights reserved. > open "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His_1.cxs" Log from Sun Jan 25 11:55:12 2026UCSF ChimeraX version: 1.11 (2025-12-17) © 2016-2025 Regents of the University of California. All rights reserved. > open "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His_1.cxs" Log from Sun Jan 25 11:18:21 2026UCSF ChimeraX version: 1.11 (2025-12-17) © 2016-2025 Regents of the University of California. All rights reserved. > open "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His.cxs" format session Log from Tue Jan 20 17:12:49 2026UCSF ChimeraX version: 1.11 (2025-12-17) © 2016-2025 Regents of the University of California. All rights reserved. > open "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His.cxs" format session Log from Tue Jan 20 16:53:43 2026UCSF ChimeraX version: 1.11 (2025-12-17) © 2016-2025 Regents of the University of California. All rights reserved. > open "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His.cxs" Log from Tue Jan 20 16:01:25 2026 > set bgColor light grey > ui tool show "command line interface" UCSF ChimeraX version: 1.11 (2025-12-17) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/frankseeber/Downloads/6His-860/6His-860_0.cif format mmcif 6His-860_0.cif title: Chai-1 predicted structure [more info...] Chain information for 6His-860_0.cif #1 --- Chain \| Description A \| Entity A Color 6His-860_0.cif by residue attribute pLDDT_score Computing secondary structure > close session > open "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His_0.cif" > format mmcif 850His_0.cif title: Chai-1 predicted structure [more info...] Chain information for 850His_0.cif #1 --- Chain \| Description A \| Entity A Color 850His_0.cif by residue attribute pLDDT_score Computing secondary structure > open "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His_0.cif" > format mmcif 850His_0.cif title: Chai-1 predicted structure [more info...] Chain information for 850His_0.cif #2 --- Chain \| Description A \| Entity A Color 850His_0.cif by residue attribute pLDDT_score Computing secondary structure > open /Users/frankseeber/Downloads/6His-860/6His-860_0.cif 6His-860_0.cif title: Chai-1 predicted structure [more info...] Chain information for 6His-860_0.cif #3 --- Chain \| Description A \| Entity A Color 6His-860_0.cif by residue attribute pLDDT_score Computing secondary structure > ui tool show Matchmaker > close #1 > ui tool show Matchmaker > matchmaker #3 to #2 Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker 850His_0.cif, chain A (#2) with 6His-860_0.cif, chain A (#3), sequence alignment score = 152.3 RMSD between 50 pruned atom pairs is 1.232 angstroms; (across all 105 pairs: 14.240) > ui tool show Matchmaker > matchmaker #3 to #2 showAlignment true Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker 850His_0.cif, chain A (#2) with 6His-860_0.cif, chain A (#3), sequence alignment score = 152.3 Alignment identifier is 1 Showing conservation header ("seq_clustal_conservation" residue attribute) for alignment 1 Hiding conservation header for alignment 1 Chains used in RMSD evaluation for alignment 1: 850His_0.cif #2/A, 6His-860_0.cif #3/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1 RMSD between 50 pruned atom pairs is 1.232 angstroms; (across all 105 pairs: 14.240) > cd "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His" Current working directory is: /Users/frankseeber/Documents/RKI/2nd LEA paper/850His > save "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His.cxs" ——— End of log from Tue Jan 20 16:01:25 2026 ——— > view name session-start opened ChimeraX session > select #3/a:1-177,259-525 3365 atoms, 3419 bonds, 441 residues, 1 model selected > color sel #c0c0c0ff [Repeated 1 time(s)] > color sel #c0c0c0fa > color sel #c0c0c0e5 > color sel #c0c0c0d5 > color sel #c0c0c0cf > color sel #c0c0c0cc > color sel #c0c0c0c7 > color sel #c0c0c0b8 > set bgColor white > color sel #c0c0c0b6 > color sel #c0c0c0ac > color sel #c0c0c0a9 > color sel #c0c0c09b > color sel #c0c0c099 > color sel #c0c0c094 > color sel #c0c0c092 > color sel #c0c0c091 > color sel #c0c0c08f > color sel #c0c0c08b > color sel #c0c0c08a > color sel #c0c0c088 > color sel #c0c0c081 > color sel #c0c0c079 > color sel #c0c0c072 > color sel #c0c0c071 > color sel #c0c0c0ff > color sel #ebebebff > color sel #d6d6d6ff > color sel #ebebebff > color sel #d6d6d6ff > select clear > select #3/a:1-177,259-525 3365 atoms, 3419 bonds, 441 residues, 1 model selected > color sel #d6d6d6ff > color sel #d6d6d6f7 > color sel #d6d6d6ec > color sel #d6d6d6ea > color sel #d6d6d6cb > color sel #d6d6d6b1 > color sel #d6d6d6a9 > color sel #d6d6d694 > color sel #d6d6d686 > color sel #d6d6d67d > color sel #d6d6d67b > color sel #d6d6d678 > color sel #d6d6d66e > color sel #d6d6d661 > color sel #d6d6d65a [Repeated 1 time(s)] > color sel #d6d6d66a > color sel #d6d6d672 > color sel #d6d6d67e > color sel #d6d6d687 > color sel #d6d6d693 > color sel #d6d6d695 > color sel #d6d6d697 > color sel #d6d6d698 > color sel #d6d6d656 > color sel #d6d6d615 > color sel #d6d6d604 > color sel #d6d6d600 > color sel #d6d6d611 > color sel #d6d6d635 > color sel #d6d6d646 > color sel #d6d6d64a > color sel #d6d6d663 > color sel #d6d6d677 [Repeated 1 time(s)] > color sel #d6d6d663 > color sel #d6d6d60a > color sel #d6d6d600 > color sel #d6d6d60a > color sel #d6d6d62c > color sel #d6d6d632 > color sel #d6d6d631 > color sel #d6d6d62c > color sel #d6d6d628 > color sel #d6d6d626 [Repeated 1 time(s)] > color sel #d6d6d625 > color sel #d6d6d626 > color sel #d6d6d628 > color sel #d6d6d629 > color sel #d6d6d62a > color sel #d6d6d62e > color sel #d6d6d630 > color sel #d6d6d632 > color sel #d6d6d633 > color sel #d6d6d634 > color sel #d6d6d636 [Repeated 1 time(s)] > select clear > cd "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His" Current working directory is: /Users/frankseeber/Documents/RKI/2nd LEA paper/850His > save "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His.cxs" [Repeated 1 time(s)] ——— End of log from Tue Jan 20 16:53:43 2026 ——— > view name session-start opened ChimeraX session > select #3/a:1-177,259-525 3365 atoms, 3419 bonds, 441 residues, 1 model selected > color sel #a9a9a942 > color sel #a9a9a944 > color sel #a9a9a947 > color sel #a9a9a948 > color sel #a9a9a949 > color sel #a9a9a94b > color sel #a9a9a94c > color sel #a9a9a94d > color sel #a9a9a94f > color sel #a9a9a950 > color sel #a9a9a952 > color sel #a9a9a953 > color sel #a9a9a954 > color sel #a9a9a955 > color sel #a9a9a956 > color sel #a9a9a958 [Repeated 1 time(s)] > color sel #a9a9a959 [Repeated 1 time(s)] > color sel #a9a9a95b > color sel #a9a9a95c > color sel #a9a9a95d [Repeated 1 time(s)] > color sel #a9a9a95e > select clear > cd "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His" Current working directory is: /Users/frankseeber/Documents/RKI/2nd LEA paper/850His > save "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His.cxs" ——— End of log from Tue Jan 20 17:12:49 2026 ——— > view name session-start opened ChimeraX session > select #3/a:1-177,259-525 3365 atoms, 3419 bonds, 441 residues, 1 model selected > select #3/a:1-177,259-525 3365 atoms, 3419 bonds, 441 residues, 1 model selected > "select #3/a:1-177,259-525" Unknown command: "select #3/a:1-177,259-525" > select #3/a:1-177,259-525 3365 atoms, 3419 bonds, 441 residues, 1 model selected > select #3/a:1-525 3959 atoms, 4022 bonds, 522 residues, 1 model selected > color sel #ebebebff > select clear > select #3/a:1-177,259-525 3365 atoms, 3419 bonds, 441 residues, 1 model selected > select #3/a:181-260 586 atoms, 593 bonds, 80 residues, 1 model selected > color sel #dda0ddff > cd "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/6His-860" Current working directory is: /Users/frankseeber/Documents/RKI/2nd LEA paper/850His/6His-860 > save "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His_1.cxs" ——— End of log from Sun Jan 25 11:18:21 2026 ——— > view name session-start opened ChimeraX session > cd "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His" Current working directory is: /Users/frankseeber/Documents/RKI/2nd LEA paper/850His > save "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His_1.cxs" > save /Users/frankseeber/Desktop/model_1.tif width 1800 transparentBackground > true [Repeated 3 time(s)] > save "/Users/frankseeber/Documents/RKI/2nd LEA paper/850His/850His vs > 860His_1.cxs" ——— End of log from Sun Jan 25 11:55:12 2026 ——— > view name session-start opened ChimeraX session > ui tool show "Show Sequence Viewer" > sequence chain #2/A Alignment identifier is 2/A > sequence chain #3/A Alignment identifier is 3/A > ui tool show Match→Align > msa3d #2/A#3/A Match→Align cutoff: 5.0, in column if within cutoff of: any 82 residue pairs aligned 110 fully populated columns Pairwise RMSDs across all fully populated columns --- Model \| 2 \| 3 2 \| 0.000 \| 28.811 3 \| 28.811 \| 0.000 Overall RMSD: 28.811 Sequence lengths: 110 522 SDM (cutoff 5.0): -247.145 Q-score: 0.002 Alignment identifier is MA-1 Showing conservation header ("seq_clustal_conservation" residue attribute) for alignment MA-1 Traceback (most recent call last): File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/match_align/tool.py", line 259, in match_align run(self.session, "msa3d " + ' '.join(args)) File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/commands/run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/commands/cli.py", line 3245, in run result = ci.function(session, *kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/match_align/cmd.py", line 225, in make_alignment alignment.associate(orig, seq=aligned, silent=True) File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/seqalign/alignment.py", line 386, in associate do_assoc() File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/seqalign/alignment.py", line 305, in do_assoc self.prematched_assoc_structure(best_match_map, best_errors, reassoc) File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/seqalign/alignment.py", line 742, in prematched_assoc_structure self._set_residue_attributes(match_maps=[match_map]) File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/seqalign/alignment.py", line 1071, in _set_residue_attributes values = [100.0 self.most_common(col)[1] / num_seqs for col in range(len(self._seqs[0]))] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/seqalign/alignment.py", line 1071, in <listcomp> values = [100.0 * self.most_common(col)[1] / num_seqs for col in range(len(self._seqs[0]))] ^^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/seqalign/alignment.py", line 691, in most_common chars, counts = self.column_counts()[col_index] ^^^^^^^^^^^^^^^^^^^^ File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/seqalign/alignment.py", line 485, in column_counts data = numpy.array([list(seq.characters) for seq in self._seqs]) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (2,) + inhomogeneous part. ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (2,) + inhomogeneous part. File "/Applications/ChimeraX-1.12-rc2026.05.07.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/seqalign/alignment.py", line 485, in column_counts data = numpy.array([list(seq.characters) for seq in self._seqs]) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ See log for complete Python traceback. OpenGL version: 4.1 INTEL-22.5.15 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine OpenGL vendor: Intel Inc. Python: 3.11.9 Locale: UTF-8 Qt version: PyQt6 6.10.2, Qt 6.10.0 Qt runtime version: 6.10.1 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro16,2 Processor Name: Quad-Core Intel Core i7 Processor Speed: 2,3 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 512 KB L3 Cache: 8 MB Hyper-Threading Technology: Enabled Memory: 32 GB System Firmware Version: 2094.80.5.0.0 (iBridge: 23.16.13120.0.0,0) OS Loader Version: 580.140.1~106 Software: System Software Overview: System Version: macOS 14.8.3 (23J220) Kernel Version: Darwin 23.6.0 Time since boot: 4 Tage, 4 Stunden und 42 Minuten Graphics/Displays: Intel Iris Plus Graphics: Chipset Model: Intel Iris Plus Graphics Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x8a53 Revision ID: 0x0007 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal DELL U2421E: Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array) UI Looks like: 1920 x 1200 @ 59.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: 2S6N6H3 Mirror: Off Online: Yes Rotation: Supported Connection Type: Thunderbolt/DisplayPort DELL U2421E: Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array) UI Looks like: 1920 x 1200 @ 59.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: BPTJBH3 Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Connection Type: Thunderbolt/DisplayPort Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.13.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 26.1.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.1.2 bs4: 0.0.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.7 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.67.1 ChimeraX-AtomicLibrary: 14.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.4 ChimeraX-Cluster: 1.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.12rc202605070126 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.5 ChimeraX-LightingGUI: 1.0 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.3 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchAlign: 1.1 ChimeraX-MatchMaker: 2.4 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.19 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.8 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.13 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.6 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.18 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.4 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.6 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.3 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.5 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.20 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.62.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.16.0 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.13 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 2.0.0 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 kiwisolver: 1.5.0 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 narwhals: 2.20.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.7 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.9.6 plotly: 6.7.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.13.4 pydantic-settings: 2.14.0 pydantic_core: 2.46.4 pydata-sphinx-theme: 0.17.1 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.1 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.10.2 PyQt6-Qt6: 6.10.1 PyQt6-WebEngine-commercial: 6.10.0 PyQt6-WebEngine-Qt6: 6.10.1 PyQt6_sip: 13.10.3 pytest: 9.0.3 pytest-cov: 7.1.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.27 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.4.2 stack-data: 0.6.3 starlette: 1.0.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 3.2.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.5 tqdm: 4.67.3 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 Unidecode: 1.4.0 urllib3: 2.6.3 uvicorn: 0.46.0 wcwidth: 0.7.0 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 yarl: 1.23.0
#20310	duplicate	Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged	Tom Goddard	chimerax-bug-report@…
Description	The following bug report has been submitted: Platform: macOS-26.4.1-arm64-arm-64bit ChimeraX Version: 1.12.dev202603022002 (2026-03-02 20:02:06 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. {"app_name":"ChimeraX","timestamp":"2026-05-06 15:03:29.00 -0400","app_version":"1.12.0","slice_uuid":"c20e09a8-923e-3fb3-856b-3e765bcb267b","build_version":"1.12.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 26.4.1 (25E253)","roots_installed":0,"name":"ChimeraX","incident_id":"AE75646E-D3E8-4004-AC9A-915A65808715"} { "uptime" : 22000, "procRole" : "Background", "version" : 2, "userID" : 502, "deployVersion" : 210, "modelCode" : "Mac15,9", "coalitionID" : 8141, "osVersion" : { "train" : "macOS 26.4.1", "build" : "25E253", "releaseType" : "User" }, "captureTime" : "2026-05-06 15:03:25.3194 -0400", "codeSigningMonitor" : 2, "incident" : "AE75646E-D3E8-4004-AC9A-915A65808715", "pid" : 21214, "translated" : false, "cpuType" : "ARM-64", "procLaunch" : "2026-05-06 15:01:58.1219 -0400", "procStartAbsTime" : 533950411714, "procExitAbsTime" : 536043083136, "procName" : "ChimeraX", "procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX", "bundleInfo" : {"CFBundleShortVersionString":"1.12.0","CFBundleVersion":"1.12.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"}, "storeInfo" : {"deviceIdentifierForVendor":"219FFBC8-1D68-5608-88AE-D84A1054BCD2","thirdParty":true}, "parentProc" : "launchd", "parentPid" : 1, "coalitionName" : "edu.ucsf.cgl.ChimeraX", "crashReporterKey" : "C250A671-49D3-4DBF-46B0-E9CD373356D3", "appleIntelligenceStatus" : {"state":"available"}, "developerMode" : 1, "codeSigningID" : "edu.ucsf.cgl.ChimeraX", "codeSigningTeamID" : "LWV8X224YF", "codeSigningFlags" : 570491649, "codeSigningValidationCategory" : 6, "codeSigningTrustLevel" : 4294967295, "codeSigningAuxiliaryInfo" : 0, "instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRCuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkf\/f\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="}, "bootSessionUUID" : "0E811BAB-7BB0-4531-9EBB-74A559199332", "wakeTime" : 3456, "sleepWakeUUID" : "535F901D-64AA-4D3D-AF7D-CCADCE65534E", "sip" : "enabled", "vmRegionInfo" : "0x8 is not in any region. Bytes before following region: 4304617464 REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL UNUSED SPACE AT START ---> __TEXT 100934000-100938000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX", "exception" : {"codes":"0x0000000000000001, 0x0000000000000008","rawCodes":[1,8],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000008"}, "termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":21214}, "vmregioninfo" : "0x8 is not in any region. Bytes before following region: 4304617464 REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL UNUSED SPACE AT START ---> __TEXT 100934000-100938000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX", "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0}, "faultingThread" : 0, "threads" : [{ "threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":52266056344},{"value":108},{"value":110},{"value":18446744072631617535},{"value":18446726482597246976},{"value":5346123806752470548},{"value":5346123806881509076},{"value":14757395258967641293},{"value":4294967286},{"value":52266056274},{"value":0},{"value":53},{"value":0},{"value":328},{"value":8492850976},{"value":0},{"value":11},{"value":259},{"value":8469551520 ,"symbolLocation":224,"symbol": "_main_thread"},{"value":0},{"value":1},{"value":4328441400 ,"symbolLocation":0,"symbol": "faulthandler_handlers"},{"value":52278676544},{"value":276827136},{"value":1},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659668184},"cpsr":{"value":1073745920},"fp":{"value":52266056416},"sp":{"value":52266056384},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659425768,"matchesCrashFrame":1},"far":{"value":0}},"id":453939,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[ {"imageOffset":38376,"symbol": "__pthread_kill" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":26840,"symbol": "pthread_kill" ,"symbolLocation":296,"imageIndex":138}, {"imageOffset":267880,"symbol": "raise" ,"symbolLocation":32,"imageIndex":139}, {"imageOffset":2447420,"symbol": "faulthandler_fatal_error" ,"symbolLocation":392,"imageIndex":1}, {"imageOffset":14244,"symbol": "_sigtramp" ,"symbolLocation":56,"imageIndex":140}, {"imageOffset":496932,"symbol": "QWindowContainer::parentWasChanged(QWidget)" ,"symbolLocation":84,"imageIndex":51}, {"imageOffset":497260,"symbol": "QWindowContainer::parentWasChanged(QWidget)" ,"symbolLocation":412,"imageIndex":51}, {"imageOffset":497260,"symbol": "QWindowContainer::parentWasChanged(QWidget)" ,"symbolLocation":412,"imageIndex":51}, {"imageOffset":497260,"symbol": "QWindowContainer::parentWasChanged(QWidget)" ,"symbolLocation":412,"imageIndex":51}, {"imageOffset":298836,"symbol": "QWidget::setParent(QWidget, QFlags)" ,"symbolLocation":1960,"imageIndex":51}, {"imageOffset":1410840,"symbol": "QDockWidget::~QDockWidget()" ,"symbolLocation":56,"imageIndex":51}, {"imageOffset":3540236,"symbol": "QDockWidgetWrapper::~QDockWidgetWrapper()" ,"symbolLocation":72,"imageIndex":50}, {"imageOffset":925356,"symbol": "QObjectPrivate::deleteChildren()" ,"symbolLocation":164,"imageIndex":48}, {"imageOffset":313060,"symbol": "QWidget::~QWidget()" ,"symbolLocation":1152,"imageIndex":51}, {"imageOffset":1633504,"symbol": "QMainWindowWrapper::~QMainWindowWrapper()" ,"symbolLocation":72,"imageIndex":50}, {"imageOffset":200296,"symbol": "PySide::destructionVisitor(SbkObject, void)" ,"symbolLocation":136,"imageIndex":47}, {"imageOffset":88068,"symbol": "Shiboken::BindingManager::visitAllPyObjects(void ()(SbkObject, void), void)" ,"symbolLocation":72,"imageIndex":45}, {"imageOffset":200048,"symbol": "PySide::destroyQCoreApplication()" ,"symbolLocation":108,"imageIndex":47}, {"imageOffset":199892,"symbol": "PySide::runCleanupFunctions()" ,"symbolLocation":100,"imageIndex":47}, {"imageOffset":248496,"symbol": "SbkQtCoreModule___moduleShutdown(_object)" ,"symbolLocation":28,"imageIndex":46}, {"imageOffset":1001136,"symbol": "cfunction_vectorcall_NOARGS" ,"symbolLocation":88,"imageIndex":1}, {"imageOffset":2439452,"symbol": "atexit_callfuncs" ,"symbolLocation":492,"imageIndex":1}, {"imageOffset":2223292,"symbol": "Py_FinalizeEx" ,"symbolLocation":104,"imageIndex":1}, {"imageOffset":2416632,"symbol": "Py_RunMain" ,"symbolLocation":476,"imageIndex":1}, {"imageOffset":2422468,"symbol": "pymain_main" ,"symbolLocation":52,"imageIndex":1}, {"imageOffset":2422404,"symbol": "Py_Main" ,"symbolLocation":36,"imageIndex":1}, {"imageOffset":5032,"symbol": "main" ,"symbolLocation":128,"imageIndex":0}, {"imageOffset":130468,"symbol": "start" ,"symbolLocation":6992,"imageIndex":141}]},{"id":453987,"name":"com.apple.NSEventThread", "threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592},{"value":140750373257216},{"value":0},{"value":140750373257216},{"value":2},{"value":4294967295},{"value":0},{"value":17179869184},{"value":0},{"value":2},{"value":0},{"value":0},{"value":32771},{"value":0},{"value":18446744073709551569},{"value":8492852784},{"value":0},{"value":4294967295},{"value":2},{"value":140750373257216},{"value":0},{"value":140750373257216},{"value":21592279046},{"value":6174285960},{"value":8589934592},{"value":18446744073709550527},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6174285808},"sp":{"value":6174285728},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":515432,"symbol": "__CFRunLoopServiceMachPort" ,"symbolLocation":160,"imageIndex":143}, {"imageOffset":509524,"symbol": "__CFRunLoopRun" ,"symbolLocation":1188,"imageIndex":143}, {"imageOffset":1371104,"symbol": "_CFRunLoopRunSpecificWithOptions" ,"symbolLocation":532,"imageIndex":143}, {"imageOffset":1420388,"symbol": "_NSEventThread" ,"symbolLocation":184,"imageIndex":144}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454029,"name":"ThreadPoolServiceThread", "threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":52251334848},{"value":4},{"value":0},{"value":0},{"value":5260599824},{"value":0},{"value":0},{"value":3},{"value":56},{"value":5263304573},{"value":5263304573},{"value":0},{"value":0},{"value":369},{"value":6183284736},{"value":0},{"value":52234649840},{"value":52251519104},{"value":0},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5155047908},"cpsr":{"value":1610616832},"fp":{"value":6183284096},"sp":{"value":6183284016},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659439528},"far":{"value":0}},"frames":[ {"imageOffset":52136,"symbol": "kevent64" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":84347364,"imageIndex":57}, {"imageOffset":84346928,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":83967972,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454030,"name":"ThreadPoolForegroundWorker", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":207820582551552},{"value":0},{"value":207820582551552},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":48387},{"value":0},{"value":18446744073709551569},{"value":37703004928},{"value":0},{"value":0},{"value":32},{"value":207820582551552},{"value":0},{"value":207820582551552},{"value":17179869186},{"value":6191705312},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6191704656},"sp":{"value":6191704576},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":84018040,"imageIndex":57}, {"imageOffset":84020700,"imageIndex":57}, {"imageOffset":84019868,"imageIndex":57}, {"imageOffset":84019596,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454031,"name":"ThreadPoolBackgroundWorker", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":210019605807104},{"value":0},{"value":210019605807104},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":48899},{"value":0},{"value":18446744073709551569},{"value":31628910616},{"value":0},{"value":0},{"value":32},{"value":210019605807104},{"value":0},{"value":210019605807104},{"value":17179869186},{"value":6200126688},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6200126032},"sp":{"value":6200125952},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":84018040,"imageIndex":57}, {"imageOffset":84020700,"imageIndex":57}, {"imageOffset":84019736,"imageIndex":57}, {"imageOffset":84019644,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454032,"name":"ThreadPoolForegroundWorker", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":212218629062656},{"value":0},{"value":212218629062656},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":49411},{"value":0},{"value":18446744073709551569},{"value":12618004660},{"value":0},{"value":0},{"value":32},{"value":212218629062656},{"value":0},{"value":212218629062656},{"value":17179869186},{"value":6208548064},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6208547408},"sp":{"value":6208547328},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":84018040,"imageIndex":57}, {"imageOffset":84020700,"imageIndex":57}, {"imageOffset":84019868,"imageIndex":57}, {"imageOffset":84019596,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454033,"name":"Chrome_IOThread", "threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":52219796992},{"value":3},{"value":0},{"value":0},{"value":5260599824},{"value":0},{"value":0},{"value":100},{"value":56},{"value":5260595600},{"value":5260595600},{"value":0},{"value":0},{"value":369},{"value":6216970240},{"value":0},{"value":4305033568},{"value":52251519872},{"value":0},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5155047908},"cpsr":{"value":1610616832},"fp":{"value":6216969584},"sp":{"value":6216969504},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659439528},"far":{"value":0}},"frames":[ {"imageOffset":52136,"symbol": "kevent64" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":84347364,"imageIndex":57}, {"imageOffset":84346928,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":53619576,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454034,"name":"MemoryInfra", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":264995187195904},{"value":0},{"value":264995187195904},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":61699},{"value":0},{"value":18446744073709551569},{"value":6225391616},{"value":0},{"value":0},{"value":32},{"value":264995187195904},{"value":0},{"value":264995187195904},{"value":17179869186},{"value":6225390576},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6225389920},"sp":{"value":6225389840},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":83753260,"imageIndex":57}, {"imageOffset":83369016,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454035,"name":"NetworkConfigWatcher", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":229810815107072},{"value":0},{"value":229810815107072},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":53507},{"value":0},{"value":18446744073709551569},{"value":6233812992},{"value":0},{"value":0},{"value":32},{"value":229810815107072},{"value":0},{"value":229810815107072},{"value":17179869186},{"value":6233811952},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6233811296},"sp":{"value":6233811216},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":83753260,"imageIndex":57}, {"imageOffset":83369016,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454036,"name":"ThreadPoolForegroundWorker", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":261696652312576},{"value":0},{"value":261696652312576},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":60931},{"value":0},{"value":18446744073709551569},{"value":51562674820},{"value":0},{"value":0},{"value":32},{"value":261696652312576},{"value":0},{"value":261696652312576},{"value":17179869186},{"value":6242233568},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6242232912},"sp":{"value":6242232832},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":84018040,"imageIndex":57}, {"imageOffset":84020700,"imageIndex":57}, {"imageOffset":84019868,"imageIndex":57}, {"imageOffset":84019596,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454037,"name":"Chrome_InProcGpuThread", "threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592},{"value":238606908129280},{"value":0},{"value":238606908129280},{"value":2},{"value":4294967295},{"value":0},{"value":17179869184},{"value":0},{"value":2},{"value":0},{"value":0},{"value":55555},{"value":5497558140160},{"value":18446744073709551569},{"value":8492852784},{"value":0},{"value":4294967295},{"value":2},{"value":238606908129280},{"value":0},{"value":238606908129280},{"value":21592279046},{"value":6250651176},{"value":8589934592},{"value":18446744073709550527},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6250651024},"sp":{"value":6250650944},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":515432,"symbol": "__CFRunLoopServiceMachPort" ,"symbolLocation":160,"imageIndex":143}, {"imageOffset":509524,"symbol": "__CFRunLoopRun" ,"symbolLocation":1188,"imageIndex":143}, {"imageOffset":1371104,"symbol": "_CFRunLoopRunSpecificWithOptions" ,"symbolLocation":532,"imageIndex":143}, {"imageOffset":367428,"symbol": "-[NSRunLoop(NSRunLoop) runMode:beforeDate:]" ,"symbolLocation":212,"imageIndex":145}, {"imageOffset":84573892,"imageIndex":57}, {"imageOffset":84568552,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454038,"name":"Chrome_ChildIOThread", "threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":52278589696},{"value":1},{"value":0},{"value":0},{"value":5260599824},{"value":0},{"value":0},{"value":1},{"value":56},{"value":5263304573},{"value":5263304573},{"value":0},{"value":0},{"value":369},{"value":6259077120},{"value":0},{"value":52234655600},{"value":52251521024},{"value":0},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5155047908},"cpsr":{"value":1610616832},"fp":{"value":6259076432},"sp":{"value":6259076352},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659439528},"far":{"value":0}},"frames":[ {"imageOffset":52136,"symbol": "kevent64" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":84347364,"imageIndex":57}, {"imageOffset":84346928,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":130465672,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454039,"name":"CompositorTileWorker1", "threadState":{"x":[{"value":260},{"value":0},{"value":512},{"value":0},{"value":0},{"value":161},{"value":0},{"value":0},{"value":6267498056},{"value":0},{"value":0},{"value":2},{"value":2},{"value":0},{"value":0},{"value":0},{"value":305},{"value":8492850904},{"value":0},{"value":52248076568},{"value":52248076696},{"value":6267498720},{"value":0},{"value":0},{"value":512},{"value":513},{"value":768},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659670312},"cpsr":{"value":1610616832},"fp":{"value":6267498176},"sp":{"value":6267498032},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659405068},"far":{"value":0}},"frames":[ {"imageOffset":17676,"symbol": "__psynch_cvwait" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":28968,"symbol": "_pthread_cond_wait" ,"symbolLocation":980,"imageIndex":138}, {"imageOffset":84184676,"imageIndex":57}, {"imageOffset":120607848,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454041,"name":"VizCompositorThread", "threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592},{"value":363951233695744},{"value":0},{"value":363951233695744},{"value":2},{"value":4294967295},{"value":0},{"value":17179869184},{"value":0},{"value":2},{"value":0},{"value":0},{"value":84739},{"value":1099511628032},{"value":18446744073709551569},{"value":8492852784},{"value":0},{"value":4294967295},{"value":2},{"value":363951233695744},{"value":0},{"value":363951233695744},{"value":21592279046},{"value":6284336680},{"value":8589934592},{"value":18446744073709550527},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6284336528},"sp":{"value":6284336448},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":515432,"symbol": "__CFRunLoopServiceMachPort" ,"symbolLocation":160,"imageIndex":143}, {"imageOffset":509524,"symbol": "__CFRunLoopRun" ,"symbolLocation":1188,"imageIndex":143}, {"imageOffset":1371104,"symbol": "_CFRunLoopRunSpecificWithOptions" ,"symbolLocation":532,"imageIndex":143}, {"imageOffset":367428,"symbol": "-[NSRunLoop(NSRunLoop) runMode:beforeDate:]" ,"symbolLocation":212,"imageIndex":145}, {"imageOffset":84573892,"imageIndex":57}, {"imageOffset":84568552,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454044,"name":"NetworkService", "threadState":{"x":[{"value":4},{"value":0},{"value":0},{"value":52235696768},{"value":2},{"value":0},{"value":0},{"value":5260599824},{"value":0},{"value":0},{"value":2},{"value":56},{"value":5263304573},{"value":5263304573},{"value":0},{"value":0},{"value":369},{"value":6292762624},{"value":0},{"value":52234665200},{"value":52251523328},{"value":0},{"value":12297829382473034411},{"value":1},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":5155047908},"cpsr":{"value":1610616832},"fp":{"value":6292762016},"sp":{"value":6292761936},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659439528},"far":{"value":0}},"frames":[ {"imageOffset":52136,"symbol": "kevent64" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":84347364,"imageIndex":57}, {"imageOffset":84346928,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454045,"name":"NetworkNotificationThreadMac", "threadState":{"x":[{"value":268451845},{"value":21592279046},{"value":8589934592},{"value":358453675556864},{"value":0},{"value":358453675556864},{"value":2},{"value":4294967295},{"value":0},{"value":17179869184},{"value":0},{"value":2},{"value":0},{"value":0},{"value":83459},{"value":0},{"value":18446744073709551569},{"value":8492852784},{"value":0},{"value":4294967295},{"value":2},{"value":358453675556864},{"value":0},{"value":358453675556864},{"value":21592279046},{"value":6301179432},{"value":8589934592},{"value":18446744073709550527},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6301179280},"sp":{"value":6301179200},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":515432,"symbol": "__CFRunLoopServiceMachPort" ,"symbolLocation":160,"imageIndex":143}, {"imageOffset":509524,"symbol": "__CFRunLoopRun" ,"symbolLocation":1188,"imageIndex":143}, {"imageOffset":1371104,"symbol": "_CFRunLoopRunSpecificWithOptions" ,"symbolLocation":532,"imageIndex":143}, {"imageOffset":367428,"symbol": "-[NSRunLoop(NSRunLoop) runMode:beforeDate:]" ,"symbolLocation":212,"imageIndex":145}, {"imageOffset":84573892,"imageIndex":57}, {"imageOffset":84568552,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454046,"name":"NetworkConfigWatcher", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":299080047656960},{"value":0},{"value":299080047656960},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":69635},{"value":0},{"value":18446744073709551569},{"value":6309605376},{"value":0},{"value":0},{"value":32},{"value":299080047656960},{"value":0},{"value":299080047656960},{"value":17179869186},{"value":6309604336},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6309603680},"sp":{"value":6309603600},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":83753260,"imageIndex":57}, {"imageOffset":83369016,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454047,"name":"ThreadPoolSingleThreadForegroundBlocking0", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":303478094168064},{"value":0},{"value":303478094168064},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":70659},{"value":0},{"value":18446744073709551569},{"value":52296503296},{"value":0},{"value":0},{"value":32},{"value":303478094168064},{"value":0},{"value":303478094168064},{"value":17179869186},{"value":6318025952},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6318025296},"sp":{"value":6318025216},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":84018040,"imageIndex":57}, {"imageOffset":84020700,"imageIndex":57}, {"imageOffset":84019956,"imageIndex":57}, {"imageOffset":84019656,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454069,"name":"NetworkConfigWatcher", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":553067233673216},{"value":0},{"value":553067233673216},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":128771},{"value":0},{"value":18446744073709551569},{"value":6326448128},{"value":0},{"value":0},{"value":32},{"value":553067233673216},{"value":0},{"value":553067233673216},{"value":17179869186},{"value":6326447088},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6326446432},"sp":{"value":6326446352},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":83753260,"imageIndex":57}, {"imageOffset":83369016,"imageIndex":57}, {"imageOffset":83911140,"imageIndex":57}, {"imageOffset":83603896,"imageIndex":57}, {"imageOffset":84075560,"imageIndex":57}, {"imageOffset":84075960,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454074,"name":"ThreadPoolBackgroundWorker", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":450812652290048},{"value":0},{"value":450812652290048},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":104963},{"value":0},{"value":18446744073709551569},{"value":33555456},{"value":0},{"value":0},{"value":32},{"value":450812652290048},{"value":0},{"value":450812652290048},{"value":17179869186},{"value":6337162464},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6337161808},"sp":{"value":6337161728},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":84018040,"imageIndex":57}, {"imageOffset":84020700,"imageIndex":57}, {"imageOffset":84019736,"imageIndex":57}, {"imageOffset":84019644,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454139,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking1", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":742389392080896},{"value":0},{"value":742389392080896},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":172851},{"value":0},{"value":18446744073709551569},{"value":83892242},{"value":0},{"value":0},{"value":32},{"value":742389392080896},{"value":0},{"value":742389392080896},{"value":17179869186},{"value":6170668256},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6170667600},"sp":{"value":6170667520},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":84018040,"imageIndex":57}, {"imageOffset":84020700,"imageIndex":57}, {"imageOffset":84019780,"imageIndex":57}, {"imageOffset":84019692,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454140,"name":"ThreadPoolForegroundWorker", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":580555024367616},{"value":0},{"value":580555024367616},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":135171},{"value":0},{"value":18446744073709551569},{"value":50332672},{"value":0},{"value":0},{"value":32},{"value":580555024367616},{"value":0},{"value":580555024367616},{"value":17179869186},{"value":6379236576},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6379235920},"sp":{"value":6379235840},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":84018040,"imageIndex":57}, {"imageOffset":84020700,"imageIndex":57}, {"imageOffset":84019868,"imageIndex":57}, {"imageOffset":84019596,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454141,"name":"ThreadPoolForegroundWorker", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":711396908072960},{"value":0},{"value":711396908072960},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":165635},{"value":0},{"value":18446744073709551569},{"value":52300378112},{"value":0},{"value":0},{"value":32},{"value":711396908072960},{"value":0},{"value":711396908072960},{"value":17179869186},{"value":6387657952},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6387657296},"sp":{"value":6387657216},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":84018040,"imageIndex":57}, {"imageOffset":84020700,"imageIndex":57}, {"imageOffset":84019868,"imageIndex":57}, {"imageOffset":84019596,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454156,"name":"ThreadPoolSingleThreadSharedForeground2", "threadState":{"x":[{"value":268451845},{"value":17179869186},{"value":0},{"value":588320325238784},{"value":0},{"value":588320325238784},{"value":32},{"value":0},{"value":0},{"value":17179869184},{"value":32},{"value":0},{"value":0},{"value":0},{"value":136979},{"value":0},{"value":18446744073709551569},{"value":52336111616},{"value":0},{"value":0},{"value":32},{"value":588320325238784},{"value":0},{"value":588320325238784},{"value":17179869186},{"value":6396079328},{"value":0},{"value":18446744073709550527},{"value":2}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6396078672},"sp":{"value":6396078592},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":84303928,"imageIndex":57}, {"imageOffset":83753404,"imageIndex":57}, {"imageOffset":84018040,"imageIndex":57}, {"imageOffset":84020700,"imageIndex":57}, {"imageOffset":84019912,"imageIndex":57}, {"imageOffset":84019668,"imageIndex":57}, {"imageOffset":84187692,"imageIndex":57}, {"imageOffset":27736,"symbol": "_pthread_start" ,"symbolLocation":136,"imageIndex":138}, {"imageOffset":7196,"symbol": "thread_start" ,"symbolLocation":8,"imageIndex":138}]},{"id":454172,"frames":[ ], "threadState":{"x":[{"value":6171242496},{"value":156443},{"value":6170705920},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6171242496},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659648520},"far":{"value":0}}},{"id":455312,"frames":[ ], "threadState":{"x":[{"value":6171815936},{"value":171235},{"value":6171279360},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6171815936},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659648520},"far":{"value":0}}},{"id":455313,"frames":[ ], "threadState":{"x":[{"value":6172389376},{"value":174419},{"value":6171852800},{"value":0},{"value":409604},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6172389376},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659648520},"far":{"value":0}}},{"id":455739, "threadState":{"x":[{"value":0},{"value":21592279046},{"value":8589934592},{"value":153978872528896},{"value":0},{"value":153978872528896},{"value":2},{"value":4294967295},{"value":0},{"value":17179869184},{"value":0},{"value":2},{"value":0},{"value":0},{"value":35851},{"value":0},{"value":18446744073709551569},{"value":8492852784},{"value":0},{"value":4294967295},{"value":2},{"value":153978872528896},{"value":0},{"value":153978872528896},{"value":21592279046},{"value":6172958456},{"value":8589934592},{"value":18446744073709550527},{"value":4412409862}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6659466612},"cpsr":{"value":4096},"fp":{"value":6172958304},"sp":{"value":6172958224},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6659390516},"far":{"value":0}},"queue":"com.apple.root.user-interactive-qos","frames":[ {"imageOffset":3124,"symbol": "mach_msg2_trap" ,"symbolLocation":8,"imageIndex":137}, {"imageOffset":79220,"symbol": "mach_msg2_internal" ,"symbolLocation":76,"imageIndex":137}, {"imageOffset":39360,"symbol": "mach_msg_overwrite" ,"symbolLocation":480,"imageIndex":137}, {"imageOffset":4032,"symbol": "mach_msg" ,"symbolLocation":24,"imageIndex":137}, {"imageOffset":515432,"symbol": "__CFRunLoopServiceMachPort" ,"symbolLocation":160,"imageIndex":143}, {"imageOffset":509524,"symbol": "__CFRunLoopRun" ,"symbolLocation":1188,"imageIndex":143}, {"imageOffset":1371104,"symbol": "_CFRunLoopRunSpecificWithOptions" ,"symbolLocation":532,"imageIndex":143}, {"imageOffset":367428,"symbol": "-[NSRunLoop(NSRunLoop) runMode:beforeDate:]" ,"symbolLocation":212,"imageIndex":145}, {"imageOffset":8433408,"symbol": "-[NSAnimation _runBlocking]" ,"symbolLocation":412,"imageIndex":144}, {"imageOffset":6696,"symbol": "_dispatch_call_block_and_release" ,"symbolLocation":32,"imageIndex":146}, {"imageOffset":111792,"symbol": "_dispatch_client_callout" ,"symbolLocation":16,"imageIndex":146}, {"imageOffset":232812,"symbol": "" ,"symbolLocation":28,"imageIndex":146}, {"imageOffset":80604,"symbol": "_dispatch_root_queue_drain" ,"symbolLocation":708,"imageIndex":146}, {"imageOffset":82208,"symbol": "_dispatch_worker_thread2" ,"symbolLocation":184,"imageIndex":146}, {"imageOffset":11908,"symbol": "_pthread_wqthread" ,"symbolLocation":232,"imageIndex":138}, {"imageOffset":7184,"symbol": "start_wqthread" ,"symbolLocation":8,"imageIndex":138}]},{"id":455740,"frames":[ ], "threadState":{"x":[{"value":6173536256},{"value":0},{"value":6172999680},{"value":0},{"value":278532},{"value":18446744073709551615},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":0},"cpsr":{"value":4096},"fp":{"value":0},"sp":{"value":6173536256},"esr":{"value":0},"pc":{"value":6659648520},"far":{"value":0}}}], "usedImages" : [ { "source" : "P", "arch" : "arm64", "base" : 4304617472, "CFBundleShortVersionString" : "1.12.0", "CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX", "size" : 16384, "uuid" : "c20e09a8-923e-3fb3-856b-3e765bcb267b", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX", "name" : "ChimeraX", "CFBundleVersion" : "1.12.0.0" }, { "source" : "P", "arch" : "arm64", "base" : 4324130816, "CFBundleShortVersionString" : "3.11.9, (c) 2001-2023 Python Software Foundation.", "CFBundleIdentifier" : "org.python.python", "size" : 3981312, "uuid" : "5662657e-7928-39be-8954-d582f8f34d51", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/Python", "name" : "Python", "CFBundleVersion" : "3.11.9" }, { "source" : "P", "arch" : "arm64", "base" : 4309270528, "size" : 49152, "uuid" : "29c3ec8a-19d4-363b-a6d9-9c2abec94f03", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/math.cpython-311-darwin.so", "name" : "math.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4309008384, "size" : 81920, "uuid" : "4dbedf5d-0596-39ea-b10e-f25d3a6c8cfb", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_datetime.cpython-311-darwin.so", "name" : "_datetime.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4309188608, "size" : 16384, "uuid" : "4b805031-de4f-3814-b939-e5cb2842c3e6", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_typing.cpython-311-darwin.so", "name" : "_typing.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4312842240, "size" : 32768, "uuid" : "78e93840-6aa2-3e12-88b1-3d140c86db21", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/zlib.cpython-311-darwin.so", "name" : "zlib.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4319952896, "size" : 16384, "uuid" : "76d59f87-05bd-3453-988f-6a1d92e48d0b", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bz2.cpython-311-darwin.so", "name" : "_bz2.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4320624640, "size" : 196608, "uuid" : "aa0512bd-866a-3f89-a0b1-370c93044c89", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_lzma.cpython-311-darwin.so", "name" : "_lzma.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4320034816, "size" : 16384, "uuid" : "1701fe90-bec8-3df9-af49-24e174fdc9fc", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_bisect.cpython-311-darwin.so", "name" : "_bisect.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4320116736, "size" : 16384, "uuid" : "66c350e7-dd50-30e7-9149-bd34d073a97b", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_random.cpython-311-darwin.so", "name" : "_random.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4319789056, "size" : 16384, "uuid" : "2eddec17-84f0-384f-badb-24bd02d808c9", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_sha512.cpython-311-darwin.so", "name" : "_sha512.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4320395264, "size" : 32768, "uuid" : "b942d9ac-2a05-30f3-90ef-07a312233107", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/binascii.cpython-311-darwin.so", "name" : "binascii.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4320198656, "size" : 32768, "uuid" : "2a9c55d5-61e3-3c08-afe7-a90f29fb3885", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_struct.cpython-311-darwin.so", "name" : "_struct.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4319870976, "size" : 16384, "uuid" : "4d6fbc3b-cd0b-392c-9f1c-9ff89288e939", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/fcntl.cpython-311-darwin.so", "name" : "fcntl.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4320313344, "size" : 16384, "uuid" : "3a00fdd3-8009-389a-b150-0f692c95822f", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_posixsubprocess.cpython-311-darwin.so", "name" : "_posixsubprocess.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4320493568, "size" : 32768, "uuid" : "4c0501e5-d7a1-34d7-aa7c-75dfe924b268", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/select.cpython-311-darwin.so", "name" : "select.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4322099200, "size" : 16384, "uuid" : "8572c211-8960-3c6f-aa3c-475dfe7280f6", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/_arrays.cpython-311-darwin.so", "name" : "_arrays.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4398645248, "size" : 540672, "uuid" : "11a0abc3-c7c1-38fe-a40c-3c419d9dff08", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib", "name" : "libarrays.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 4408115200, "size" : 2670592, "uuid" : "744b099b-9156-3efd-95ee-949f9bec068e", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_umath.cpython-311-darwin.so", "name" : "_multiarray_umath.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4504125440, "size" : 21299200, "uuid" : "9854a721-2573-3169-81ec-19ea40ce8077", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib", "name" : "libopenblas64_.0.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 4399333376, "size" : 3522560, "uuid" : "dd0e012a-b6de-31b1-a28e-260c7b51e595", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib", "name" : "libgfortran.5.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 4403052544, "size" : 311296, "uuid" : "6d39d54b-d80e-3218-a095-b81ad0b3be90", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libquadmath.0.dylib", "name" : "libquadmath.0.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 4323524608, "size" : 65536, "uuid" : "d9875303-8f38-33d9-a0d3-ab0adff3b915", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/.dylibs\/libgcc_s.1.1.dylib", "name" : "libgcc_s.1.1.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 4323229696, "size" : 98304, "uuid" : "a262ab27-9e1b-3b52-9b2f-1c173bcac7f9", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_pickle.cpython-311-darwin.so", "name" : "_pickle.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4321968128, "size" : 16384, "uuid" : "dd2e6975-e10c-3bf3-9bb5-95cfb3c5d91e", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_contextvars.cpython-311-darwin.so", "name" : "_contextvars.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4323983360, "size" : 65536, "uuid" : "340d4f4e-8cd4-3e24-9215-eb9235031bd3", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/core\/_multiarray_tests.cpython-311-darwin.so", "name" : "_multiarray_tests.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4323672064, "size" : 81920, "uuid" : "1288fa0d-7e49-3d72-a33f-338b00fa673f", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ctypes.cpython-311-darwin.so", "name" : "_ctypes.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4405952512, "size" : 98304, "uuid" : "09f94631-f551-3559-ba88-aff49917d8fe", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-311-darwin.so", "name" : "_umath_linalg.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4405805056, "size" : 65536, "uuid" : "7b5335ce-92a1-3ae2-bde0-0e5d5641b2c9", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-311-darwin.so", "name" : "_pocketfft_internal.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4407181312, "size" : 622592, "uuid" : "05ddaab9-9d7f-3317-a3c4-5e9936fe3ceb", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/mtrand.cpython-311-darwin.so", "name" : "mtrand.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4405526528, "size" : 147456, "uuid" : "377e255e-f9a4-3173-8265-a899000c5d0f", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/bit_generator.cpython-311-darwin.so", "name" : "bit_generator.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4479123456, "size" : 196608, "uuid" : "8590d52a-d755-3ffd-8f68-f9cb638359fc", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_common.cpython-311-darwin.so", "name" : "_common.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4323409920, "size" : 32768, "uuid" : "473ca62c-10c9-3a36-9a61-5ab9a1b7d0ba", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_hashlib.cpython-311-darwin.so", "name" : "_hashlib.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4487299072, "size" : 2473984, "uuid" : "b85d21fc-4c7a-37e4-ad24-9b0d20177f55", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libcrypto.3.dylib", "name" : "libcrypto.3.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 4323868672, "size" : 32768, "uuid" : "6781c716-85bc-3dcc-b059-b59077dd4059", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_blake2.cpython-311-darwin.so", "name" : "_blake2.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4478550016, "size" : 311296, "uuid" : "0033ea49-a161-3564-b09e-6a6c3b902698", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_bounded_integers.cpython-311-darwin.so", "name" : "_bounded_integers.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4407918592, "size" : 65536, "uuid" : "7dab4595-a351-3061-861b-c426baee85b3", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_mt19937.cpython-311-darwin.so", "name" : "_mt19937.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4478943232, "size" : 65536, "uuid" : "d3035eea-ed0e-398a-afbe-f9a8016701db", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_philox.cpython-311-darwin.so", "name" : "_philox.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4479729664, "size" : 81920, "uuid" : "35fb9307-f991-3159-86db-21f6c67b9198", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_pcg64.cpython-311-darwin.so", "name" : "_pcg64.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4479893504, "size" : 49152, "uuid" : "17a4344b-3221-36c4-9019-53cc1223e124", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_sfc64.cpython-311-darwin.so", "name" : "_sfc64.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4482826240, "size" : 737280, "uuid" : "49451e8a-e3c8-3429-83d8-249e81e378cd", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/numpy\/random\/_generator.cpython-311-darwin.so", "name" : "_generator.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4479565824, "size" : 16384, "uuid" : "e1984258-3aba-3351-9b97-6cc398e29690", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_opcode.cpython-311-darwin.so", "name" : "_opcode.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4482547712, "size" : 114688, "uuid" : "c69a6a31-5313-376e-ad15-b5c7d09062c9", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/geometry\/_geometry.cpython-311-darwin.so", "name" : "_geometry.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4479401984, "size" : 32768, "uuid" : "d8396ecd-b388-3762-afa8-2befbe9b0f1e", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_json.cpython-311-darwin.so", "name" : "_json.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 4479647744, "size" : 16384, "uuid" : "34590199-3ce2-32b1-aa23-b4a50138a445", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/shiboken6\/Shiboken.abi3.so", "name" : "Shiboken.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 4491984896, "size" : 327680, "uuid" : "f0b78160-24ab-3c2d-bccc-4ef944f40d30", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/shiboken6\/libshiboken6.abi3.6.10.dylib", "name" : "libshiboken6.abi3.6.10.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 4997234688, "size" : 3489792, "uuid" : "62750a98-bc70-38bc-96d4-b518d7fefded", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtCore.abi3.so", "name" : "QtCore.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 4486823936, "size" : 262144, "uuid" : "1da89093-9eca-3280-a410-df22a1865bbd", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/libpyside6.abi3.6.10.dylib", "name" : "libpyside6.abi3.6.10.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 4492509184, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtCore", "size" : 4980736, "uuid" : "4a7a0348-b410-3e23-8373-53f6876eb7f4", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtCore.framework\/Versions\/A\/QtCore", "name" : "QtCore", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64e", "base" : 4499062784, "CFBundleShortVersionString" : "3.0", "CFBundleIdentifier" : "com.apple.security.csparser", "size" : 114688, "uuid" : "94cbb39b-af04-3e75-85e6-d8cedf3ebd91", "path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser", "name" : "csparser", "CFBundleVersion" : "61901.101.4" }, { "source" : "P", "arch" : "arm64", "base" : 5055905792, "size" : 5357568, "uuid" : "188a1c2d-f44f-3e57-bd21-a37a7a840d28", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtWidgets.abi3.so", "name" : "QtWidgets.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5064605696, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtWidgets", "size" : 4636672, "uuid" : "029543bf-5fc1-3a0c-ade7-edba0cf3d8b1", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets", "name" : "QtWidgets", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5038424064, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtGui", "size" : 7094272, "uuid" : "3fa37de7-ceac-3c91-9317-791e19111d2a", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtGui.framework\/Versions\/A\/QtGui", "name" : "QtGui", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 4500750336, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtDBus", "size" : 557056, "uuid" : "46e5cebb-3051-35c6-aa1e-6f530f243273", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtDBus.framework\/Versions\/A\/QtDBus", "name" : "QtDBus", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5046878208, "size" : 4128768, "uuid" : "19d1f0df-5853-3f4e-92f0-cf3d8ba3aeb4", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtGui.abi3.so", "name" : "QtGui.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 4500340736, "size" : 131072, "uuid" : "62f59615-5ffe-335a-a7f2-59f1bd3d516d", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtWebEngineWidgets.abi3.so", "name" : "QtWebEngineWidgets.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5054578688, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtWebEngineWidgets", "size" : 98304, "uuid" : "734ba2dc-e6e9-3df0-9d88-ad0801ed2b1f", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets", "name" : "QtWebEngineWidgets", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5070700544, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtWebEngineCore", "size" : 196100096, "uuid" : "a2041c1d-0f03-3135-b072-06f37af81323", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore", "name" : "QtWebEngineCore", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5054808064, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtWebChannel", "size" : 180224, "uuid" : "1f5a9373-1bdc-3742-bad8-9dcb1bea6389", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel", "name" : "QtWebChannel", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 4503552000, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtPositioning", "size" : 425984, "uuid" : "136401ce-ff2c-3946-8c85-079d2f1b3868", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning", "name" : "QtPositioning", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5055086592, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtPrintSupport", "size" : 278528, "uuid" : "f3c176f4-a597-31aa-a4a6-fff3d7eabc8f", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport", "name" : "QtPrintSupport", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5310906368, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtQuick", "size" : 4407296, "uuid" : "366dd91f-1043-3a6a-892e-aba04ff6600a", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtQuick.framework\/Versions\/A\/QtQuick", "name" : "QtQuick", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5299732480, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtOpenGL", "size" : 425984, "uuid" : "558b4bc6-80cc-3efe-a8b9-ad6c799461d4", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL", "name" : "QtOpenGL", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5316886528, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtQml", "size" : 3915776, "uuid" : "5590edb7-8b6d-34b6-8d27-cc40bb02f6ad", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtQml.framework\/Versions\/A\/QtQml", "name" : "QtQml", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5303844864, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtNetwork", "size" : 1277952, "uuid" : "e7108f9e-c31b-3a95-92a1-a818280e4881", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork", "name" : "QtNetwork", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5055578112, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtQuickWidgets", "size" : 81920, "uuid" : "ca877217-9640-3f2d-8a6c-327a2b92fa6c", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets", "name" : "QtQuickWidgets", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5298831360, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtQmlMeta", "size" : 98304, "uuid" : "5db2c603-b4d3-3329-92e7-fa33139fc967", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtQmlMeta.framework\/Versions\/A\/QtQmlMeta", "name" : "QtQmlMeta", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5302337536, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtQmlModels", "size" : 704512, "uuid" : "16be90e1-2a47-39a8-b4cf-d79af19b9654", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels", "name" : "QtQmlModels", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 4500619264, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtQmlWorkerScript", "size" : 49152, "uuid" : "b879a8c7-80e2-34aa-9b36-524a33b44553", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtQmlWorkerScript.framework\/Versions\/A\/QtQmlWorkerScript", "name" : "QtQmlWorkerScript", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5300371456, "size" : 1064960, "uuid" : "8266a89a-3991-3b9f-a585-f07fef39d9d9", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtNetwork.abi3.so", "name" : "QtNetwork.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5307711488, "size" : 557056, "uuid" : "7df543ee-74fd-31b9-a39f-04aa8782f3c1", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtWebEngineCore.abi3.so", "name" : "QtWebEngineCore.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5299027968, "size" : 294912, "uuid" : "00a72224-e417-3227-aae6-1a2657fd79e5", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtPrintSupport.abi3.so", "name" : "QtPrintSupport.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5303287808, "size" : 81920, "uuid" : "ba8f4e0f-960b-3071-8255-4d1bd662f3e7", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtWebChannel.abi3.so", "name" : "QtWebChannel.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5306597376, "size" : 704512, "uuid" : "3dd57985-5eac-307d-a26f-1a4f2a8ce5dd", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/plugins\/platforms\/libqcocoa.dylib", "name" : "libqcocoa.dylib" }, { "source" : "P", "arch" : "arm64e", "base" : 4498833408, "size" : 49152, "uuid" : "a4dd56f1-375a-3540-844b-5e397f0b78b3", "path" : "\/usr\/lib\/libobjc-trampolines.dylib", "name" : "libobjc-trampolines.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5365579776, "size" : 147456, "uuid" : "3124ba49-4f2c-36d2-9fd9-f382a264172e", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/plugins\/styles\/libqmacstyle.dylib", "name" : "libqmacstyle.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5302206464, "size" : 16384, "uuid" : "35d693c5-c61b-308a-974c-b88655915dcd", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_heapq.cpython-311-darwin.so", "name" : "_heapq.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5310726144, "size" : 65536, "uuid" : "3454571c-408b-34e5-9bae-96f393e4fb85", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_socket.cpython-311-darwin.so", "name" : "_socket.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5307580416, "size" : 49152, "uuid" : "9c6afc97-732b-3225-b6e4-d3cd90218697", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/array.cpython-311-darwin.so", "name" : "array.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5372133376, "size" : 114688, "uuid" : "99cf2bb1-f289-37d8-8b78-138157aa59f7", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_ssl.cpython-311-darwin.so", "name" : "_ssl.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5373706240, "size" : 409600, "uuid" : "ae09de6b-222a-3004-b8cd-719ba8f2af8f", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/libssl.3.dylib", "name" : "libssl.3.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5365317632, "size" : 49152, "uuid" : "0ab9ddb4-499f-3422-b288-c7314c99c753", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_asyncio.cpython-311-darwin.so", "name" : "_asyncio.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5303746560, "size" : 16384, "uuid" : "fb94d9c6-7824-3352-aa8a-bf19bdf88103", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-311-darwin.so", "name" : "_load_libs.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5382963200, "size" : 1130496, "uuid" : "ee4eff44-de1a-3607-a14a-23bc105dbc77", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib", "name" : "libatomstruct.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5365465088, "size" : 32768, "uuid" : "60c0d0d4-9113-3f6a-bb1c-a0b76816eec9", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib", "name" : "libelement.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5365186560, "size" : 16384, "uuid" : "8446d006-57a7-3107-814d-d72a5c01e085", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib", "name" : "libpyinstance.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5380423680, "size" : 180224, "uuid" : "3fee22e6-4f7b-3dba-bfd6-3822ccb5de19", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/libmolc.dylib", "name" : "libmolc.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5379588096, "size" : 360448, "uuid" : "d29f069f-95a0-3680-99c2-b4e92dbdfff8", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cymol.cpython-311-darwin.so", "name" : "cymol.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5373427712, "size" : 98304, "uuid" : "52628665-4237-39f0-a723-c7916b7fe147", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/tinyarray.cpython-311-darwin.so", "name" : "tinyarray.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5380210688, "size" : 65536, "uuid" : "4850da6b-6b6d-3665-a231-67ad56e64bb9", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/cytmpl.cpython-311-darwin.so", "name" : "cytmpl.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5365039104, "size" : 16384, "uuid" : "800c3744-a004-3c84-932a-da77907f37a6", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_scproxy.cpython-311-darwin.so", "name" : "_scproxy.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5384830976, "size" : 32768, "uuid" : "1246c3db-77f6-3a6f-9f74-e5458e9e5f0b", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_osx.abi3.so", "name" : "_psutil_osx.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5389320192, "size" : 16384, "uuid" : "d7f09611-5052-3c81-9703-da75c50a95b1", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/psutil\/_psutil_posix.abi3.so", "name" : "_psutil_posix.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5384732672, "size" : 16384, "uuid" : "83e175eb-730a-3a79-aed7-ba331a29c75b", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-311-darwin.so", "name" : "_load_libs.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5384601600, "size" : 32768, "uuid" : "f68b5e39-c66f-31d9-8a70-069216648357", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib", "name" : "libpdbconnect.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5390450688, "size" : 409600, "uuid" : "dbc92584-5ab2-3c49-91f5-95681b977192", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/map\/_map.cpython-311-darwin.so", "name" : "_map.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5391532032, "size" : 131072, "uuid" : "66dedfab-7217-3a88-8bac-eed65f7e4285", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/surface\/_surface.cpython-311-darwin.so", "name" : "_surface.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5556322304, "size" : 393216, "uuid" : "832b7f73-e854-33e1-9f65-eaf5250700d9", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imaging.cpython-311-darwin.so", "name" : "_imaging.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5555109888, "size" : 704512, "uuid" : "76ab410c-4898-3fde-a872-5cefcdd51b56", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libtiff.6.dylib", "name" : "libtiff.6.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5558321152, "size" : 540672, "uuid" : "688c6473-716c-32eb-8cfe-f11203c4574d", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libjpeg.62.4.0.dylib", "name" : "libjpeg.62.4.0.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5558976512, "size" : 622592, "uuid" : "6994e1d8-b3e5-38d6-aef0-721586b2d5ce", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.3.dylib", "name" : "libopenjp2.2.5.3.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5391204352, "size" : 98304, "uuid" : "5be17d28-46cf-3336-bfae-f315e9891018", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libz.1.3.1.zlib-ng.dylib", "name" : "libz.1.3.1.zlib-ng.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5555945472, "size" : 163840, "uuid" : "6fa02d7f-daaa-3c79-8b0d-c5319e003f3d", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libxcb.1.1.0.dylib", "name" : "libxcb.1.1.0.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5557600256, "size" : 262144, "uuid" : "8dfe23b8-ad17-3d21-8c5e-5525cd8953db", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib", "name" : "liblzma.5.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5391368192, "size" : 16384, "uuid" : "32a172ad-f11b-381b-9270-3f9a195cbe7f", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/.dylibs\/libXau.6.dylib", "name" : "libXau.6.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5391040512, "size" : 49152, "uuid" : "5c70a77e-200c-3726-a6de-0399edcc9847", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-311-darwin.so", "name" : "errorchecker.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5556912128, "size" : 196608, "uuid" : "95c975a4-91e3-31fe-a715-be83480573f8", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-311-darwin.so", "name" : "arraydatatype.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5557223424, "size" : 229376, "uuid" : "9e09bd88-c13a-3c38-9fb5-b69d0d5b5966", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/wrapper.cpython-311-darwin.so", "name" : "wrapper.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5562843136, "size" : 65536, "uuid" : "676cef9a-5a26-3d2a-88b9-e231f4df3205", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/formathandler.cpython-311-darwin.so", "name" : "formathandler.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5562990592, "size" : 49152, "uuid" : "1816c909-6f9e-3120-9611-404226815162", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/latebind.cpython-311-darwin.so", "name" : "latebind.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5557944320, "size" : 114688, "uuid" : "9024befe-21ad-36d1-91fc-082e1515bec2", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/vbo.cpython-311-darwin.so", "name" : "vbo.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64e", "base" : 5592498176, "CFBundleShortVersionString" : "350.38", "CFBundleIdentifier" : "com.apple.AGXMetalG15X-M1", "size" : 8880128, "uuid" : "5974501e-fae4-379b-abeb-4016d910fbd7", "path" : "\/System\/Library\/Extensions\/AGXMetalG15X_M1.bundle\/Contents\/MacOS\/AGXMetalG15X_M1", "name" : "AGXMetalG15X_M1", "CFBundleVersion" : "350.38" }, { "source" : "P", "arch" : "arm64", "base" : 5639290880, "size" : 163840, "uuid" : "6c696eae-d97e-30fa-9d5e-4d3a6cba4cdc", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/pyexpat.cpython-311-darwin.so", "name" : "pyexpat.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5651578880, "size" : 1114112, "uuid" : "8294cace-7433-3592-87d9-468d949e3e9c", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/unicodedata.cpython-311-darwin.so", "name" : "unicodedata.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5641338880, "size" : 16384, "uuid" : "02bf27ec-066f-363a-8e63-6f98a25f9a65", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_mac_util.cpython-311-darwin.so", "name" : "_mac_util.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64e", "base" : 5652774912, "CFBundleShortVersionString" : "1.0", "CFBundleIdentifier" : "com.apple.AppleMetalOpenGLRenderer", "size" : 409600, "uuid" : "0a5a2e2b-9899-3606-af8c-84850db23fea", "path" : "\/System\/Library\/Extensions\/AppleMetalOpenGLRenderer.bundle\/Contents\/MacOS\/AppleMetalOpenGLRenderer", "name" : "AppleMetalOpenGLRenderer", "CFBundleVersion" : "1" }, { "source" : "P", "arch" : "arm64", "base" : 5648875520, "size" : 49152, "uuid" : "a75322cb-796c-355d-9fe3-0251a8e0f146", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/plugins\/iconengines\/libqsvgicon.dylib", "name" : "libqsvgicon.dylib" }, { "source" : "P", "arch" : "arm64", "base" : 5677432832, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtSvg", "size" : 376832, "uuid" : "aa967a49-edfc-3fcf-b5ae-f59b4a617078", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtSvg.framework\/Versions\/A\/QtSvg", "name" : "QtSvg", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5679120384, "size" : 81920, "uuid" : "d8712301-6342-3f60-9863-a3ef5aaf2ec2", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-311-darwin.so", "name" : "numpy_formathandler.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5681971200, "size" : 49152, "uuid" : "5bd21324-288d-31d8-a98b-f8c1776ff590", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-311-darwin.so", "name" : "nones_formathandler.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5678530560, "size" : 81920, "uuid" : "322fc538-890c-37d6-b941-662f1083ca42", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/_version.cpython-311-darwin.so", "name" : "_version.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5744017408, "size" : 180224, "uuid" : "83f39565-33c4-320a-ac75-81b90af76e46", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lz4\/frame\/_frame.cpython-311-darwin.so", "name" : "_frame.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5744295936, "size" : 114688, "uuid" : "9220bc70-84c6-3969-a20c-5143c67c63e2", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/core\/_serialize.cpython-311-darwin.so", "name" : "_serialize.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5744525312, "size" : 114688, "uuid" : "4054e3d0-2474-37de-901e-4c10afdac686", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/msgpack\/_cmsgpack.cpython-311-darwin.so", "name" : "_cmsgpack.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5743624192, "size" : 32768, "uuid" : "f660af98-8bcc-35ff-a0a7-91590a2716eb", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/lib-dynload\/_csv.cpython-311-darwin.so", "name" : "_csv.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5748195328, "size" : 688128, "uuid" : "0b5a163f-49a3-358a-ab96-cd77f0c4a284", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtDataVisualization.abi3.so", "name" : "QtDataVisualization.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5745786880, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtDataVisualization", "size" : 917504, "uuid" : "d333d4f7-3a3f-3420-9c5f-fe019c4f31b0", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtDataVisualization.framework\/Versions\/A\/QtDataVisualization", "name" : "QtDataVisualization", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5770477568, "size" : 7995392, "uuid" : "02486a51-0c30-3acd-9b43-913f2abc7641", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtOpenGL.abi3.so", "name" : "QtOpenGL.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5743722496, "size" : 114688, "uuid" : "0187f5a3-719c-33d3-8b99-55b9dd4cda7e", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/QtOpenGLWidgets.abi3.so", "name" : "QtOpenGLWidgets.abi3.so" }, { "source" : "P", "arch" : "arm64", "base" : 5743427584, "CFBundleShortVersionString" : "6.10", "CFBundleIdentifier" : "org.qt-project.QtOpenGLWidgets", "size" : 49152, "uuid" : "8f1cf9bd-c430-351f-9660-0cbc846fb64c", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PySide6\/Qt\/lib\/QtOpenGLWidgets.framework\/Versions\/A\/QtOpenGLWidgets", "name" : "QtOpenGLWidgets", "CFBundleVersion" : "6.10.1" }, { "source" : "P", "arch" : "arm64", "base" : 5752897536, "size" : 81920, "uuid" : "933eac4c-254f-3477-bfdd-24f247b3cec7", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/atomic\/_ribbons.cpython-311-darwin.so", "name" : "_ribbons.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5748080640, "size" : 16384, "uuid" : "6f810e22-4704-3198-b410-f0d4de5f9dbc", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/graphics\/_graphics.cpython-311-darwin.so", "name" : "_graphics.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5756305408, "size" : 376832, "uuid" : "35326293-3359-322c-9c6d-c20090bfd00c", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/mmcif.cpython-311-darwin.so", "name" : "mmcif.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5755174912, "size" : 376832, "uuid" : "899cab3b-1415-3178-b547-f84a15718256", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so", "name" : "_mmcif.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5752553472, "size" : 180224, "uuid" : "393a26f8-77f3-3363-a1ac-c63aff8717d6", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/pdb\/_pdbio.cpython-311-darwin.so", "name" : "_pdbio.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5761056768, "size" : 3768320, "uuid" : "06082bf4-58c8-3f16-9f71-841cf9880fbe", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so", "name" : "etree.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64", "base" : 5766512640, "size" : 131072, "uuid" : "63b5bd02-9626-3588-a39c-88d4f882312b", "path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/_elementpath.cpython-311-darwin.so", "name" : "_elementpath.cpython-311-darwin.so" }, { "source" : "P", "arch" : "arm64e", "base" : 6659387392, "size" : 250512, "uuid" : "51565b39-f595-3e96-a217-fef29815057a", "path" : "\/usr\/lib\/system\/libsystem_kernel.dylib", "name" : "libsystem_kernel.dylib" }, { "source" : "P", "arch" : "arm64e", "base" : 6659641344, "size" : 52028, "uuid" : "e7a73008-0c09-31e3-9dd9-0c61652f0e85", "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib", "name" : "libsystem_pthread.dylib" }, { "source" : "P", "arch" : "arm64e", "base" : 6658154496, "size" : 528120, "uuid" : "66ebd321-6899-3863-ba24-5cfc3076a0cb", "path" : "\/usr\/lib\/system\/libsystem_c.dylib", "name" : "libsystem_c.dylib" }, { "source" : "P", "arch" : "arm64e", "base" : 6659694592, "size" : 35060, "uuid" : "d93ec420-f465-3a3a-916d-a04af9b023eb", "path" : "\/usr\/lib\/system\/libsystem_platform.dylib", "name" : "libsystem_platform.dylib" }, { "source" : "P", "arch" : "arm64e", "base" : 6655623168, "size" : 679624, "uuid" : "9f682dcf-340c-3bfa-bcdd-dd702f30313e", "path" : "\/usr\/lib\/dyld", "name" : "dyld" }, { "size" : 0, "source" : "A", "base" : 0, "uuid" : "00000000-0000-0000-0000-000000000000" }, { "source" : "P", "arch" : "arm64e", "base" : 6659928064, "CFBundleShortVersionString" : "6.9", "CFBundleIdentifier" : "com.apple.CoreFoundation", "size" : 5626976, "uuid" : "04941709-2330-3bf8-9213-6d33964db448", "path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation", "name" : "CoreFoundation", "CFBundleVersion" : "4424.1.402" }, { "source" : "P", "arch" : "arm64e", "base" : 6731685888, "CFBundleShortVersionString" : "6.9", "CFBundleIdentifier" : "com.apple.AppKit", "size" : 24259264, "uuid" : "59e23bd5-d01e-305a-b96f-a5790356049a", "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit", "name" : "AppKit", "CFBundleVersion" : "2685.50.120" }, { "source" : "P", "arch" : "arm64e", "base" : 6685536256, "CFBundleShortVersionString" : "6.9", "CFBundleIdentifier" : "com.apple.Foundation", "size" : 16654816, "uuid" : "8e9a5c62-7e95-3047-81e7-735ae1aee5f8", "path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation", "name" : "Foundation", "CFBundleVersion" : "4424.1.402" }, { "source" : "P", "arch" : "arm64e", "base" : 6657847296, "size" : 291392, "uuid" : "e17aa23f-db2a-3302-b14c-f6b08c540fcf", "path" : "\/usr\/lib\/system\/libdispatch.dylib", "name" : "libdispatch.dylib" } ], "sharedCache" : { "base" : 6654492672, "size" : 5978570752, "uuid" : "2d40543a-792e-37b8-978d-3d7030e1aa81" }, "vmSummary" : "ReadOnly portion of Libraries: Total=2.1G resident=0K(0%) swapped_out_or_unallocated=2.1G(100%) Writable regions: Total=1.1G written=1138K(0%) resident=1138K(0%) swapped_out=0K(0%) unallocated=1.1G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 128K 1 Activity Tracing 256K 1 AttributeGraph Data 1024K 1 CG image 5104K 5 CG raster data 3296K 7 ColorSync 96K 6 CoreAnimation 1456K 91 CoreGraphics 80K 5 CoreServices 816K 3 CoreUI image data 1568K 19 Foundation 16K 1 Kernel Alloc Once 32K 1 MALLOC 225.6M 78 MALLOC guard page 3632K 4 Memory Tag 22 64.0M 1 OpenGL GLSL 256K 3 PROTECTED_MEMORY 16K 1 STACK GUARD 448K 28 Stack 187.5M 29 Stack Guard 56.0M 1 VM_ALLOCATE 175.6M 110 VM_ALLOCATE (reserved) 416.0M 1 reserved VM address space (unallocated) __AUTH 6014K 632 __AUTH_CONST 89.4M 1025 __CTF 824 1 __DATA 42.4M 1116 __DATA_CONST 62.1M 1166 __DATA_DIRTY 8345K 880 __FONT_DATA 2352 1 __GLSLBUILTINS 5176K 1 __LINKEDIT 608.2M 138 __OBJC_RO 79.1M 1 __OBJC_RW 2597K 1 __TEXT 1.5G 1188 __TPRO_CONST 128K 2 dyld private memory 256K 3 mapped file 302.4M 47 page table in kernel 1138K 1 shared memory 1520K 24 =========== ======= ======= TOTAL 3.8G 6624 TOTAL, minus reserved VM space 3.4G 6624 ", "legacyInfo" : { "threadTriggered" : { "name" : "CrBrowserMain", "queue" : "com.apple.main-thread" } }, "logWritingSignature" : "fabc70eb7725ecb9b2ff4e735d99cab5d8b29faf", "roots_installed" : 0, "bug_type" : "309", "trmStatus" : 1, "trialInfo" : { "rollouts" : [ { "rolloutId" : "65a8173205d942272410674b", "factorPackIds" : [ "65d39fa4cb0e2417d11ce5f6" ], "deploymentId" : 240000001 }, { "rolloutId" : "67d07cd6a7affa169ae21f45", "factorPackIds" : [ ], "deploymentId" : 240000002 } ], "experiments" : [ ] } } Log: UCSF ChimeraX version: 1.12.dev202603022002 (2026-03-02) © 2016-2026 Regents of the University of California. All rights reserved. > open "/Users/tj4488/Library/Mobile > Documents/com~apple~CloudDocs/5_work_princeton/1_projects/1_IAA > project/4_NC_reviewer comments/3_experiments/3.4_Chimera X analysis/2_iadDE > compare to 7YLS.cxs" Log from Tue Mar 3 19:47:08 2026UCSF ChimeraX version: 1.12.dev202603022002 (2026-03-02) © 2016-2026 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open "/Users/tj4488/Library/Mobile > Documents/com~apple~CloudDocs/5_work_princeton/1_projects/1_IAA > project/2_items/2_Protein and crystal > structure/2_iadDE/1.3_structure/1.2_model1c_refine_001.pdb" Summary of feedback from opening /Users/tj4488/Library/Mobile Documents/com~apple~CloudDocs/5_work_princeton/1_projects/1_IAA project/2_items/2_Protein and crystal structure/2_iadDE/1.3_structure/1.2_model1c_refine_001.pdb --- warnings \| Ignored bad PDB record found on line 1 REMARK Date 2022-10-18 Time 14:28:29 EDT -0400 (1666117709.28 s) Ignored bad PDB record found on line 2 REMARK PHENIX refinement Ignored bad PDB record found on line 4 REMARK **************** INPUT FILES AND LABELS **************************** Ignored bad PDB record found on line 5 REMARK Reflections: Ignored bad PDB record found on line 6 REMARK file name : jc12-4-fast_dp-truncated-unique.mtz 36 messages similar to the above omitted Chain information for 1.2_model1c_refine_001.pdb #1 --- Chain \| Description A \| No description available B \| No description available Computing secondary structure > open "/Users/tj4488/Library/Mobile > Documents/com~apple~CloudDocs/5_work_princeton/1_projects/1_IAA > project/2_items/2_Protein and crystal > structure/2_iadDE/1.3_structure/2.1_model1h_refmac1_expanded.pdb" 2.1_model1h_refmac1_expanded.pdb title: \--- [more info...] Chain information for 2.1_model1h_refmac1_expanded.pdb #2 --- Chain \| Description A C E \| No description available B D F \| No description available Non-standard residues in 2.1_model1h_refmac1_expanded.pdb #2 --- EDO — (EDO) FES — (FES) ZN — (ZN) 315 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > open "/Users/tj4488/Library/Mobile > Documents/com~apple~CloudDocs/5_work_princeton/1_projects/1_IAA > project/2_items/2_Protein and crystal > structure/2_iadDE/1.3_structure/2.2_model1h_refmac1.pdb" 2.2_model1h_refmac1.pdb title: \--- [more info...] Chain information for 2.2_model1h_refmac1.pdb #3 --- Chain \| Description A \| No description available B \| No description available Non-standard residues in 2.2_model1h_refmac1.pdb #3 --- EDO — (EDO) FES — (FES) ZN — (ZN) 105 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. Computing secondary structure > hide #!1 models > hide #!3 models > hide #!2 models > show #!1 models > hide #!1 models > show #!2 models > hide #!2 models > show #!3 models > close #1 > close #2 > open 7YLS.pdb No such file/path: 7YLS.pdb > open /Users/tj4488/Desktop/7YLS.cif Summary of feedback from opening /Users/tj4488/Desktop/7YLS.cif --- notes \| Fetching CCD ACT from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/T/ACT/ACT.cif Fetching CCD FE from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/E/FE/FE.cif Fetching CCD FES from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/S/FES/FES.cif Fetching CCD GOL from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/L/GOL/GOL.cif 7YLS.cif title: Structure of a bacteria protein complex [more info...] Chain information for 7YLS.cif #1 --- Chain \| Description \| UniProt A \| Aromatic-ring-hydroxylating dioxygenase beta subunit \| C5CSP7_VARPS 1-162 B \| Rieske (2Fe-2S) domain protein \| C5CSP6_VARPS 1-437 Non-standard residues in 7YLS.cif #1 --- ACT — acetate ion FE — Fe (III) ion FES — FE2/S2 (inorganic) cluster GOL — glycerol (glycerin; propane-1,2,3-triol) 4807 atoms have anisotropic B-factors. Depict anisotropic information with Thermal Ellipsoids [start tool...] or the aniso command. > matchmaker #3 to #1 Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker 7YLS.cif, chain B (#1) with 2.2_model1h_refmac1.pdb, chain A (#3), sequence alignment score = 2230.9 RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs: 0.924) > cartoon > color cyan #1 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color orange #3 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > transparency 40 #3 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > cartoon > color cyan #1 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > cartoon > color cyan #1 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color orange #3 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > transparency 40 #3 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > cartoon [Repeated 1 time(s)] > color cyan cartoons #1 Expected ',' or a keyword > color orange cartoons #3 Expected ',' or a keyword > cartoon > hide atoms > color cyan #1 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color orange #3 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > transparency 40 #3 target c Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > rmsd #3 to #1 perResidue true Expected a keyword > matchmaker #3 to #1 Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker 7YLS.cif, chain B (#1) with 2.2_model1h_refmac1.pdb, chain A (#3), sequence alignment score = 2230.9 RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs: 0.924) > rmsd #3 to #1 Number of atoms from first atom spec (5625) differs from number in second (9866) > select add #1 9866 atoms, 9516 bonds, 9 pseudobonds, 1072 residues, 2 models selected > select add #3 15491 atoms, 14432 bonds, 18 pseudobonds, 2502 residues, 4 models selected > select subtract #3 9866 atoms, 9516 bonds, 9 pseudobonds, 1072 residues, 2 models selected > select subtract #1 Nothing selected > color cyan #1 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > cartoon > color cyan models #1 Expected ',' or a keyword > toolshed show > show target ab > color #1 #00c8b3ff > color #3 #f2a350ff > transparency 50 > ui tool show Matchmaker > matchmaker #!3 to #1 Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker 7YLS.cif, chain B (#1) with 2.2_model1h_refmac1.pdb, chain A (#3), sequence alignment score = 2230.9 RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs: 0.924) > morph #1 #2 Require at least 2 structures for morph > morph #1 #3 Computed 51 frame morph #2 > coordset #2 1,51 > distance #1@ca #3@ca Expected exactly two atoms and/or measurable objects (e.g. axes, planes), or one or more measurable objects and one or more atoms, got 1188 atoms and 0 measurable objects > transparency 50 #3 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > movie record > movie encode /Users/tj4488/Desktop/movie1.mp4 framerate 25.0 Movie saved to /Users/tj4488/Desktop/movie1.mp4 > show #2 target ab > select add #2 844 atoms, 838 bonds, 4 pseudobonds, 135 residues, 2 models selected > close #2 No visible models! > show #!1 models > show #!3 models > transparency cartoons 50 #3 Missing or invalid "percent" argument: Expected a number > transparency #3 50 target c > ui tool show Matchmaker > matchmaker #!3 to #1 Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker 7YLS.cif, chain B (#1) with 2.2_model1h_refmac1.pdb, chain A (#3), sequence alignment score = 2230.9 RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs: 0.924) > show #!1 target m > view #1 clip false > select add #1 9866 atoms, 9516 bonds, 9 pseudobonds, 1072 residues, 2 models selected > select add #3 15491 atoms, 14432 bonds, 18 pseudobonds, 2502 residues, 4 models selected > transparency (#!1,3 & sel) 70 > select subtract #3 9866 atoms, 9516 bonds, 9 pseudobonds, 1072 residues, 2 models selected > select subtract #1 Nothing selected > rmsd #1 to #3 perResidue true Expected a keyword > rmsd #1 to #3 perResidue Expected a keyword > align #1 toAtoms #3 Unequal number of atoms to pair, 9866 and 5625 > matchmaker #1 to #3 Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker 2.2_model1h_refmac1.pdb, chain A (#3) with 7YLS.cif, chain B (#1), sequence alignment score = 2230.9 RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs: 0.924) > help matchmaker > mmaker #3/A to #1/B showAlignment true Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker 7YLS.cif, chain B (#1) with 2.2_model1h_refmac1.pdb, chain A (#3), sequence alignment score = 2230.9 Alignment identifier is 1 Showing conservation header ("seq_conservation" residue attribute) for alignment 1 Hiding conservation header for alignment 1 Chains used in RMSD evaluation for alignment 1: 7YLS.cif #1/B, 2.2_model1h_refmac1.pdb #3/A Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1 RMSD between 418 pruned atom pairs is 0.419 angstroms; (across all 435 pairs: 0.924) > select #1/B:234 12 atoms, 11 bonds, 1 residue, 1 model selected > select #1/B:234-240 104 atoms, 105 bonds, 7 residues, 1 model selected > select #1/B:234 #3/A:234 20 atoms, 18 bonds, 2 residues, 2 models selected > select #1/B:226 7 atoms, 6 bonds, 1 residue, 1 model selected > select #1/B:226-300 1155 atoms, 1175 bonds, 75 residues, 1 model selected > hide atoms > show cartoons > select #3/A:234 8 atoms, 7 bonds, 1 residue, 1 model selected > select #3/A:234-240 57 atoms, 58 bonds, 7 residues, 1 model selected > select #1/B:245 #3/A:245 23 atoms, 21 bonds, 2 residues, 2 models selected > mmaker #3/B to #1/A showAlignment true Parameters --- Chain pairing \| bb Alignment algorithm \| Needleman-Wunsch Similarity matrix \| BLOSUM-62 SS fraction \| 0.3 Gap open (HH/SS/other) \| 18/18/6 Gap extend \| 1 SS matrix \| \| \| H \| S \| O ---\|---\|---\|--- H \| 6 \| -9 \| -6 S \| \| 6 \| -6 O \| \| \| 4 Iteration cutoff \| 2 Matchmaker 7YLS.cif, chain A (#1) with 2.2_model1h_refmac1.pdb, chain B (#3), sequence alignment score = 839.4 Alignment identifier is 2 Showing conservation header ("seq_conservation" residue attribute) for alignment 2 Hiding conservation header for alignment 2 Chains used in RMSD evaluation for alignment 2: 7YLS.cif #1/A, 2.2_model1h_refmac1.pdb #3/B Showing rmsd header ("seq_rmsd" residue attribute) for alignment 2 RMSD between 158 pruned atom pairs is 0.190 angstroms; (across all 158 pairs: 0.190) > select #1/B:280 #3/A:280 22 atoms, 21 bonds, 2 residues, 2 models selected > select #1/B:280 17 atoms, 17 bonds, 1 residue, 1 model selected > select #1/B:280-292 186 atoms, 189 bonds, 13 residues, 1 model selected > save "/Users/tj4488/Desktop/iadDE compare to 7YLS.cxs" ——— End of log from Tue Mar 3 19:47:08 2026 ——— > view name session-start opened ChimeraX session OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M3 Max OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PySide6 6.10.1, Qt 6.10.1 Qt runtime version: 6.10.1 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac15,9 Model Number: Z1AF001AGLL/A Chip: Apple M3 Max Total Number of Cores: 16 (12 Performance and 4 Efficiency) Memory: 64 GB System Firmware Version: 18000.101.7 OS Loader Version: 18000.101.7 Software: System Software Overview: System Version: macOS 26.4.1 (25E253) Kernel Version: Darwin 25.4.0 Time since boot: 2 hours, 49 minutes Graphics/Displays: Apple M3 Max: Chipset Model: Apple M3 Max Type: GPU Bus: Built-In Total Number of Cores: 40 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: DELL U2412M: Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array) UI Looks like: 1920 x 1200 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3456 x 2234 Retina Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.1.1 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.64.1 ChimeraX-AtomicLibrary: 14.2.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.12.dev202603022002 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.3 ChimeraX-LightingGUI: 1.0 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.18 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.5 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.5.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.5 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.3 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.4 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.20 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.6 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.9.2 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.13.1 pydantic_core: 2.41.5 pydata-sphinx-theme: 0.16.1 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.0 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PySide6: 6.10.1 PySide6_Addons: 6.10.1 PySide6_Essentials: 6.10.1 pytest: 9.0.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.22 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.1 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 shiboken6: 6.10.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.3.2 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.41.0 wcwidth: 0.6.0 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.23.0
#20309	can't reproduce	UnicodeDecodeError reading PDB file	Eric Pettersen	chimerax-bug-report@…
Description	The following bug report has been submitted: Platform: Windows-10-10.0.19045 ChimeraX Version: 1.12rc202605110632 (2026-05-11 06:32:03 UTC) Description Replace this text with list of actions that caused this problem to occur Log: Startup Messages --- note \| available bundle cache has not been initialized yet You can double click a model's Name or ID in the model panel to edit those fields UCSF ChimeraX version: 1.12rc202605110632 (2026-05-11) © 2016-2026 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > help help:quickstart [Repeated 1 time(s)] > open C:/Users/yves/Downloads/AF-E9B373-F1-model_v6.pdb AF-E9B373-F1-model_v6.pdb title: Alphafold monomer V2.0 prediction for tubulin--tyrosine ligase (E9B373) [more info...] Chain information for AF-E9B373-F1-model_v6.pdb #1 --- Chain \| Description \| UniProt A \| tubulin--tyrosine ligase \| E9B373_LEIMU 1-495 Computing secondary structure > open C:/Users/yves/Downloads/AF-0000000065716909-model_v1TbTTL.pdb Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\dialog.py", line 355, in _qt_safe run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + ("" File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3245, in run result = ci.function(session, kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 138, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3245, in run result = ci.function(session, kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 233, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 546, in collated_open return remember_data_format() ^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 517, in remember_data_format models, status = func(func_args, func_kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\pdb\\__init__.py", line 45, in open return pdb.open_pdb(session, data, file_name, kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\pdb\pdb.py", line 91, in open_pdb pointers = _pdbio.read_pdb_file(stream, session.logger, not coordsets, atomic, segid_chains, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "<frozen codecs>", line 322, in decode UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte File "", line 322, in decode See log for complete Python traceback. > hide #1 models > show #1 models > open "C:/Users/yves/Downloads/AF-Q8NG68-F1-model_v6 Human TTL.pdb" AF-Q8NG68-F1-model_v6 Human TTL.pdb title: Alphafold monomer V2.0 prediction for tubulin--tyrosine ligase (Q8NG68) [more info...] Chain information for AF-Q8NG68-F1-model_v6 Human TTL.pdb #2 --- Chain \| Description \| UniProt A \| tubulin--tyrosine ligase \| TTL_HUMAN 1-377 Computing secondary structure > open C:/Users/yves/Downloads/AF-0000000065716909-model_v1TbTTL.pdb Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\dialog.py", line 355, in _qt_safe run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + ("" File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3245, in run result = ci.function(session, kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 138, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3245, in run result = ci.function(session, kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 233, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 546, in collated_open return remember_data_format() ^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 517, in remember_data_format models, status = func(func_args, func_kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\pdb\\__init__.py", line 45, in open return pdb.open_pdb(session, data, file_name, kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\pdb\pdb.py", line 91, in open_pdb pointers = _pdbio.read_pdb_file(stream, session.logger, not coordsets, atomic, segid_chains, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "<frozen codecs>", line 322, in decode UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte File "", line 322, in decode See log for complete Python traceback. > open "C:/Users/yves/Downloads/AF-0000000065716909-model_v1 TbTTL.pdb" Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\dialog.py", line 355, in _qt_safe run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + ("" File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3245, in run result = ci.function(session, kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 138, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3245, in run result = ci.function(session, kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 233, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 546, in collated_open return remember_data_format() ^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 517, in remember_data_format models, status = func(func_args, func_kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\pdb\\__init__.py", line 45, in open return pdb.open_pdb(session, data, file_name, kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\pdb\pdb.py", line 91, in open_pdb pointers = _pdbio.read_pdb_file(stream, session.logger, not coordsets, atomic, segid_chains, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "<frozen codecs>", line 322, in decode UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte File "", line 322, in decode See log for complete Python traceback. > open C:/Users/yves/Downloads/AF-0000000065716909-model_v1.pdb Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\dialog.py", line 355, in _qt_safe run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + ("" File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\run.py", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3245, in run result = ci.function(session, kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 138, in cmd_open models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\core\commands\cli.py", line 3245, in run result = ci.function(session, kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 233, in provider_open models, status = collated_open(session, None, [data], data_format, _add_models, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 546, in collated_open return remember_data_format() ^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\open_command\cmd.py", line 517, in remember_data_format models, status = func(func_args, func_kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\pdb\\__init__.py", line 45, in open return pdb.open_pdb(session, data, file_name, kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Program Files\ChimeraX 1.12rc202605110632\bin\Lib\site- packages\chimerax\pdb\pdb.py", line 91, in open_pdb pointers = _pdbio.read_pdb_file(stream, session.logger, not coordsets, atomic, segid_chains, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "<frozen codecs>", line 322, in decode UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte File "", line 322, in decode See log for complete Python traceback. OpenGL version: 3.3.0 - Build 27.20.100.8854 OpenGL renderer: Intel(R) HD Graphics 630 OpenGL vendor: Intel Python: 3.11.9 Locale: fr_FR.cp1252 Qt version: PyQt6 6.10.2, Qt 6.10.0 Qt runtime version: 6.10.1 Qt platform: windows Manufacturer: Dell Inc. Model: OptiPlex 7050 OS: Microsoft Windows 10 Professionnel (Build 19045.6466) Memory: 8,446,840,832 MaxProcessMemory: 137,438,953,344 CPU: 4 Intel(R) Core(TM) i5-7500 CPU @ 3.40GHz OSLanguage: fr-FR Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.13.0 appdirs: 1.4.4 asttokens: 3.0.1 attrs: 26.1.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.2.0 bs4: 0.0.2 build: 1.3.0 certifi: 2026.4.22 cftime: 1.6.5 charset-normalizer: 3.4.7 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.67.1 ChimeraX-AtomicLibrary: 14.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.4 ChimeraX-Cluster: 1.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.12rc202605110632 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.5 ChimeraX-LightingGUI: 1.0 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.3 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchAlign: 1.1 ChimeraX-MatchMaker: 2.4 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.19 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.8 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.13 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.6 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.18 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.4 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.6 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.3 colorama: 0.4.6 comm: 0.2.3 comtypes: 1.4.11 contourpy: 1.3.3 coverage: 7.14.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.20 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.62.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.16.0 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.14 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 2.0.0 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 kiwisolver: 1.5.0 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.2 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 narwhals: 2.21.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 nvidia-nvjitlink-cu12: 12.9.86 OpenMM: 8.4.0 OpenMM-CUDA-12: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.7 pep517: 0.13.1 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.9.6 plotly: 6.7.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.5.2 psutil: 7.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.13.4 pydantic-settings: 2.14.1 pydantic_core: 2.46.4 pydata-sphinx-theme: 0.17.1 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.1 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.10.2 PyQt6-Qt6: 6.10.1 PyQt6-WebEngine-commercial: 6.10.0 PyQt6-WebEngine-Qt6: 6.10.1 PyQt6_sip: 13.10.3 pytest: 9.0.3 pytest-cov: 7.1.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.28 pywin32: 311 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.4.3 stack-data: 0.6.3 starlette: 1.0.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 3.2.1 threadpoolctl: 3.6.0 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.5 tqdm: 4.67.3 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 tzdata: 2026.2 Unidecode: 1.4.0 urllib3: 2.7.0 uvicorn: 0.46.0 wcwidth: 0.7.0 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 WMI: 1.5.1 yarl: 1.23.0

1 2 3 4 5 6 7 8 9 10 11 →

Query Language

query: TracLinks and the [[TicketQuery]] macro both use a mini “query language” for specifying query filters. Basically, the filters are separated by ampersands (&). Each filter then consists of the ticket field name, an operator, and one or more values. More than one value are separated by a pipe (|), meaning that the filter matches any of the values. To include a literal & or | in a value, escape the character with a backslash (\).

The available operators are:

`=`	the field content exactly matches one of the values
`~=`	the field content contains one or more of the values
`^=`	the field content starts with one of the values
`$=`	the field content ends with one of the values

All of these operators can also be negated:

`!=`	the field content matches none of the values
`!~=`	the field content does not contain any of the values
`!^=`	the field content does not start with any of the values
`!$=`	the field content does not end with any of the values

The date fields created and modified can be constrained by using the = operator and specifying a value containing two dates separated by two dots (..). Either end of the date range can be left empty, meaning that the corresponding end of the range is open. The date parser understands a few natural date specifications like "3 weeks ago", "last month" and "now", as well as Bugzilla-style date specifications like "1d", "2w", "3m" or "4y" for 1 day, 2 weeks, 3 months and 4 years, respectively. Spaces in date specifications can be left out to avoid having to quote the query string.

`created=2007-01-01..2008-01-01`	query tickets created in 2007
`created=lastmonth..thismonth`	query tickets created during the previous month
`modified=1weekago..`	query tickets that have been modified in the last week
`modified=..30daysago`	query tickets that have been inactive for the last 30 days

See also: TracTickets, TracReports, TracGuide

Note: See TracWiki for help on using the wiki.

Download in other formats:

Plain Text

Context Navigation

Trac Ticket Queries

Table of Contents

Filters

Navigating Tickets

Saving Queries

Using TracLinks

Using the [[TicketQuery]] Macro

Customizing the table format

Results (1 - 3 of 13830)

Full rows

Results (1 - 3 of 13830)

Query Language

Download in other formats:

Using the `[[TicketQuery]]` Macro