Timeline



Dec 4, 2025: Yesterday

4:46 PM PrivacyAndSecurity edited by Tom Ferrin
A little wordsmithing and typo corrections. (diff)
3:25 PM Ticket #19481 (Crash using open/save dialog) closed by Eric Pettersen
can't reproduce
10:24 AM Ticket #19476 (Crash in Qt 6.9 event loop processing geometry change, QDockWidget.event()) closed by Tom Goddard
can't reproduce: Probably Qt bug. In QDockWidget::event().
10:24 AM Ticket #19479 (Save command history: Permission Denied) closed by Eric Pettersen
can't reproduce: After hundreds of other commands saved, just started denying …
10:21 AM Ticket #19481 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
10:21 AM Ticket #19475 (Crash in swap_buffers exposing status line during Mac wakeup) closed by Tom Goddard
duplicate: Duplicate of #19474.
10:20 AM Ticket #19474 (Crash in swap_buffers exposing status line during Mac wakeup) closed by Tom Goddard
duplicate: Qt 6.8 in QOpenGLContext.makeCurrent() for Side View dispatched an …
10:00 AM Ticket #19480 (Hydrogen naming inconsistent) created by rvwilliams@…
[…] AF3_crd-dimer_rank0_addH.pdb​
8:33 AM Ticket #19479 (Save command history: Permission Denied) created by chimerax-bug-report@…
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1:11 AM Ticket #19478 (Crash finding H-bonds) created by elio.karim@…
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Dec 3, 2025:

11:46 PM Ticket #18689 (Volume 'session' attribute is None, Segmentations tool) closed by Zach Pearson
fixed: This state should be impossible to get into now. I removed the 'minus' …
4:29 PM Ticket #19477 (Improvements to mcp_server bundle that allows Claude AI agent to ...) created by Tom Goddard
This ticket is to make miscellaneous usability improvements to the …
4:06 PM Ticket #19476 (Crash in Qt 6.9 event loop processing geometry change, QDockWidget.event()) created by chimerax-bug-report@…
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3:57 PM Ticket #19475 (Crash in swap_buffers exposing status line during Mac wakeup) created by chimerax-bug-report@…
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2:08 PM Ticket #19445 (Web service → ProtocolError) closed by Zach Pearson
fixed: We now catch ProtocolError in the try...catch that guards that block …
11:22 AM Ticket #19474 (Crash in swap_buffers exposing status line during Mac wakeup) created by chimerax-bug-report@…
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10:19 AM Ticket #19470 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: The ChimeraX bug report panel said what we know about this crash: …
9:55 AM Ticket #19472 (Incorrect .gro file) closed by Eric Pettersen
not a bug: .gro file was missing second line (number of atoms)
9:30 AM Ticket #19471 (Crash using open/save dialog) closed by Eric Pettersen
can't reproduce
4:49 AM Ticket #19473 (SEQCROW: read ORCA: shapes not aligned) created by chimerax-bug-report@…
[…]

Dec 2, 2025:

7:31 PM Ticket #19472 (Incorrect .gro file) created by chimerax-bug-report@…
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5:07 PM Ticket #19471 (Crash using open/save dialog) created by chimerax-bug-report@…
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4:36 PM Ticket #19241 (MemoryError importing bundles during startup custom initialization) closed by Greg Couch
can't reproduce: Not sure how this happened.
4:19 PM Ticket #19469 (ChimeraX bug report: black display on Linux) closed by Greg Couch
fixed: Newer version of ChimeraX (and thus a newer version of Qt User …
4:05 PM Ticket #19470 (Crash on Mac waking from sleep) created by oswanson@…
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1:06 PM PrivacyAndSecurity edited by Tom Goddard
(diff)
12:05 PM Ticket #19468 (alphafold search: 'AtomicStructure' object has no attribute ...) closed by Tom Goddard
wontfix: The command "alphafold predict #1/A" appears to have produced a …
11:06 AM Dev2025-12-8 created by Tom Goddard
11:05 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:01 AM Ticket #19463 (Crash in swap_buffers waking from sleep on Mac) closed by Tom Goddard
duplicate: Python traceback shows it is in expose event drawing status line …
10:38 AM ChangeLog edited by Greg Couch
(diff)
9:53 AM Ticket #19469 (ChimeraX bug report: black display on Linux) created by livia.galinari@…
[…] 948e8a41-d879-48de-9c8a-6e5dec028dcc.png​
9:30 AM Ticket #19468 (alphafold search: 'AtomicStructure' object has no attribute ...) created by chimerax-bug-report@…
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8:59 AM Ticket #19467 (SEQCROW: 'ArtistList' object has no attribute 'remove') created by chimerax-bug-report@…
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3:08 AM Ticket #19466 (ISOLDE: problems refining UTP and CTP) created by sergei.gurianov@…
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1:51 AM Ticket #19465 (Crash closing tool) created by till.dorendorf@…
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1:13 AM Ticket #19464 (Fw: Problem opening local small-molecule CIF file) created by Ute.Roehrig@…
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Dec 1, 2025:

9:55 PM Ticket #19463 (Crash in swap_buffers waking from sleep on Mac) created by chimerax-bug-report@…
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7:50 PM Ticket #19462 (Find Cavities not disposing of deleted structures) created by chimerax-bug-report@…
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7:12 PM PrivacyAndSecurity edited by Tom Goddard
(diff)
6:44 PM PrivacyAndSecurity created by Tom Goddard
5:41 PM WikiStart edited by Tom Goddard
(diff)
5:31 PM Ticket #19453 (MemoryError saving session) closed by Tom Goddard
fixed: I added an error message when saving a session file gets out of memory …
4:28 PM Ticket #19446 (alphafold contacts: atom KeyError) closed by Tom Goddard
can't reproduce: I tested a boltz 2 prediction of phosphorylated 9gi8 homodimer and …
4:14 PM Ticket #19458 (glClear: invalid framebuffer operation) closed by Tom Goddard
duplicate: glClear() error in status line on expose event. External Dell …
3:55 PM DeveloperMeetings edited by Tom Goddard
(diff)
3:54 PM Dev2025-12-1 edited by Tom Goddard
(diff)
3:00 PM Ticket #19461 (Crash deleting atoms/bonds) closed by Eric Pettersen
worksforme
3:00 PM Ticket #19461 (Crash deleting atoms/bonds) reopened by Eric Pettersen
3:00 PM Ticket #19461 (Crash deleting atoms/bonds) closed by Eric Pettersen
can't reproduce: The same structures/commands worked for me.
2:48 PM Ticket #19460 (H-Bonds: More than 2 coplanar positions specified) closed by Eric Pettersen
can't reproduce: Hi Shabir, We don't really have the capability to diagnose problems …
2:41 PM Ticket #19459 (Crash in event loop) closed by Eric Pettersen
can't reproduce
1:59 PM Ticket #19455 (MemoryError saving session including maps) closed by Tom Goddard
can't reproduce: It doesn't look like you have large maps or atomic models open in …
1:28 PM Ticket #19444 (Log blank) closed by Tom Goddard
nonchimerax: If you mean the Log panel of ChimeraX is blank, that indicates a …
1:24 PM Ticket #19442 (Crash in glBufferSubData changing volume level) closed by Tom Goddard
duplicate: Duplicate of #19441
1:23 PM Ticket #19441 (Crash in glBufferSubData changing volume level) closed by Tom Goddard
limitation: Mac M3 OpenGL graphics driver crash. Had 5 1024 x 1024 x 375 int8 …
12:03 PM Ticket #19457 (Crash deallocating UserError traceback stack) closed by Eric Pettersen
can't reproduce
12:00 PM Ticket #19456 (MemoryError saving session including maps) closed by Eric Pettersen
duplicate
11:53 AM Ticket #19451 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by Eric Pettersen
duplicate
11:50 AM Ticket #19450 (Crash using open/save dialog) closed by Eric Pettersen
can't reproduce
11:43 AM Ticket #19449 (KVFinder on old MacOS) closed by Eric Pettersen
limitation
11:20 AM Ticket #19443 (Crash in connect_structure while opening mmCIF) closed by Eric Pettersen
can't reproduce: I don't see the problematic "open" command in the log. Possibly it's …
10:25 AM Ticket #19292 (Text entry area nearly invisible in dark mode) closed by Greg Couch
fixed: Fixed in the current release candidate and in the next daily build. …
10:01 AM Dev2025-12-1 edited by Greg Couch
(diff)
8:34 AM Ticket #19461 (Crash deleting atoms/bonds) created by chimerax-bug-report@…
[…]
7:28 AM Ticket #19460 (H-Bonds: More than 2 coplanar positions specified) created by shabir.najmudin@…
[…]
6:36 AM Ticket #19459 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:15 AM Ticket #19458 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
[…]
2:24 AM Ticket #19457 (Crash deallocating UserError traceback stack) created by chimerax-bug-report@…
[…]

Nov 30, 2025:

8:05 PM Ticket #19456 (MemoryError saving session including maps) created by wangyue1@…
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8:04 PM Ticket #19455 (MemoryError saving session including maps) created by wangyue1@…
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7:25 AM Ticket #19454 (XMAS: find shortest: problem generating CSV/TSV file) created by Yokoyama@…
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2:34 AM Ticket #19453 (MemoryError saving session) created by chimerax-bug-report@…
[…]
1:35 AM Ticket #19452 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by 1793794602@…
[…]
1:30 AM Ticket #19451 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by chimerax-bug-report@…
[…]

Nov 29, 2025:

7:34 AM Ticket #19450 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]

Nov 28, 2025:

8:48 PM Ticket #19449 (KVFinder on old MacOS) created by chimerax-bug-report@…
[…]
5:36 PM Ticket #19448 (Supported coordinate set looping) created by Tony Schaefer
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9:05 AM Ticket #19447 (Private SMILES fetching) created by Tristan Croll
[…] chimerax_openbabel-0.1-py3-none-any.whl​

Nov 27, 2025:

11:45 PM Ticket #19446 (alphafold contacts: atom KeyError) created by chimerax-bug-report@…
[…]
9:41 AM Ticket #19445 (Web service → ProtocolError) created by chimerax-bug-report@…
[…]
5:30 AM Ticket #19444 (Log blank) created by florear@…
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