![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
May 12, 2026: Today
- 1:52 PM Ticket #20313 (ChimeraX bug report submission) created by
- […]
- 12:41 PM Ticket #20312 (ChimeraX bug report submission) created by
- […]
- 12:12 PM Dev2026-05-18 edited by
- (diff)
- 10:37 AM Ticket #20311 (Match→Align associating to alignment: numpy error) closed by
- can't reproduce: Something went haywire in this 2-chain pairing. How could the RMSD in …
- 9:58 AM Ticket #20310 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) closed by
- duplicate: Was exiting; PySide6
- 9:55 AM Ticket #20309 (UnicodeDecodeError reading PDB file) closed by
- can't reproduce
- 9:54 AM Ticket #20308 (KVFinder on old MacOS) closed by
- limitation: Hi Rebecca, Unfortunately, the underlying pyKVFinder program that …
- 9:53 AM Ticket #20304 (Crash on Mac waking from sleep) closed by
- duplicate: This ChimeraX crash is caused by a bug in the Qt window toolkit. It …
- 9:51 AM Ticket #20307 (Regular PDB file opened in MD Viewer) closed by
- duplicate
- 9:50 AM Dev2026-05-18 created by
- 9:49 AM 2026-5-14 created by
- 9:48 AM DeveloperMeetings edited by
- (diff)
- 9:44 AM Ticket #20305 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 7:59 AM Ticket #20311 (Match→Align associating to alignment: numpy error) created by
- […]
- 7:59 AM Ticket #20310 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) created by
- […]
- 6:51 AM Ticket #20309 (UnicodeDecodeError reading PDB file) created by
- […]
- 3:45 AM Ticket #20308 (KVFinder on old MacOS) created by
- […]
- 12:07 AM Ticket #20307 (Regular PDB file opened in MD Viewer) created by
- […]
May 11, 2026: Yesterday
- 5:30 PM Ticket #20306 (Crash in QAccessible::uniqueId) created by
- […]
- 5:14 PM Ticket #20303 (Help→Documentation Index→ChimeraX Python Scripts now requires login) closed by
- fixed
- 5:12 PM Ticket #20259 (Save MD analysis GUI info in sessions) closed by
- fixed
- 5:02 PM Ticket #20305 (Proofpoint Essentials - Quarantine Digest) created by
- […]
- 5:00 PM Ticket #9726 (Profile Grids) closed by
- fixed: Well, there's always more to do, but the essential parts are implemented.
- 4:46 PM Ticket #15737 (AmberTools 24 breaks Mac ChimeraX verification) closed by
- invalid: Not trying to use AmberTools24 anymore, so no longer relevant.
- 4:26 PM Dev2026-05-11 edited by
- (diff)
- 3:04 PM Dev2026-05-11 edited by
- (diff)
- 2:18 PM Dev2026-05-11 edited by
- (diff)
- 12:12 PM Ticket #20304 (Crash on Mac waking from sleep) created by
- […]
- 11:17 AM Ticket #20297 (Cannot save movie frames) closed by
- not a bug: Using movie record then recording some frames then movie stop then …
- 10:58 AM Ticket #20302 (Crash in swap_buffers when status line exposed Mac Qt 6.9.2) closed by
- duplicate: Side view QOpenGLContext.makeCurrent() dispatches expose event on …
- 10:58 AM Ticket #20303 (Help→Documentation Index→ChimeraX Python Scripts now requires login) created by
- Requires Trac login
- 10:56 AM Ticket #20301 (Crash in QObject::event in event loop) closed by
- can't reproduce: No indication of what caused this Qt crash in the event loop. Appears …
- 10:52 AM Ticket #20300 (Crash in QOpenGLContext::swapBuffers) closed by
- can't reproduce: A bit strange that the Python traceback shows this crash in the event …
- 10:48 AM Ticket #20299 (glClear: invalid framebuffer operation on statusbar expose) closed by
- duplicate: This ChimeraX error is caused by a bug in the Qt window toolkit. We …
- 10:47 AM Ticket #20298 (glClear: invalid framebuffer operation on statusbar expose) closed by
- duplicate
- 10:42 AM Ticket #20296 (glClear: invalid framebuffer operation on statusbar expose) closed by
- duplicate
- 10:39 AM Ticket #20294 (Crash trying to render GUI with hundreds of sequence viewers) closed by
- can't reproduce: AFAIK, there is a confirmation dialog for any of the ways of opening a …
- 10:22 AM Ticket #20302 (Crash in swap_buffers when status line exposed Mac Qt 6.9.2) created by
- […]
- 7:22 AM Ticket #20301 (Crash in QObject::event in event loop) created by
- […]
- 3:30 AM Ticket #20300 (Crash in QOpenGLContext::swapBuffers) created by
- […]
May 10, 2026:
- 3:16 PM Ticket #20299 (glClear: invalid framebuffer operation on statusbar expose) created by
- […]
- 9:08 AM Ticket #20298 (glClear: invalid framebuffer operation on statusbar expose) created by
- […]
May 9, 2026:
May 8, 2026:
- 4:04 PM Ticket #20296 (glClear: invalid framebuffer operation on statusbar expose) created by
- […]
- 3:19 PM Ticket #20295 (Make Boltz and OpenFold installs work with Nvidia Blackwell GPUs) created by
- ChimeraX installs PyTorch 2.7.1 based on cuda 12.6 when installing …
- 1:10 PM Ticket #20283 (Improve mutation set automatic structure association) closed by
- fixed: Fixed. Made structure chains with identical sequences automatically …
- 11:51 AM Ticket #20293 (Crash in QOpenGLContext.swapBuffers() after expose event) closed by
- duplicate
- 11:50 AM Ticket #20292 (Crash in PySide in Shiboken::Errors::storePythonOverrideErrorOrPrint ...) closed by
- nonchimerax: ChimeraX is still using PyQt due to PySide6 bugs such as this.
- 11:46 AM Ticket #20291 (Crash moving tool window, Mac multiple displays) closed by
- duplicate: This ChimeraX crash was in the Qt window toolkit moving a ChimeraX …
- 11:40 AM Ticket #20290 (Crash in swap_buffers after expose event) closed by
- duplicate: ChimeraX 1.12 has work-around of not handling status line expose …
- 9:29 AM Ticket #20294 (Crash trying to render GUI with hundreds of sequence viewers) created by
- […]
- 6:09 AM Ticket #20293 (Crash in QOpenGLContext.swapBuffers() after expose event) created by
- […]
- 1:05 AM Ticket #20292 (Crash in PySide in Shiboken::Errors::storePythonOverrideErrorOrPrint ...) created by
- […]
- 1:02 AM Ticket #20291 (Crash moving tool window, Mac multiple displays) created by
- […]
- 12:28 AM Ticket #20290 (Crash in swap_buffers after expose event) created by
- […]
May 7, 2026:
- 5:47 PM Ticket #20288 (Device loss detected in Present()) closed by
- nonchimerax: Windows sometimes loses the OpenGL context and logs "Device loss …
- 4:23 PM Ticket #20281 (Mutation heatmap error dragging box after deleting residues) closed by
- fixed: Fixed. Made code detect residue or atom deletion and restore colors …
- 3:50 PM Ticket #20285 (Crash in QAccessible::uniqueId) closed by
- duplicate: The opened PDB 6KSR and it crashes after the open completes in …
- 3:31 PM Ticket #20289 (All black windows) created by
- […]
- 3:29 PM Ticket #20286 (Crash in QAccessible::uniqueId) closed by
- duplicate: Same reporter, same crash as #20285
- 2:47 PM Ticket #20069 (ffmpeg: Permission Denied) closed by
- duplicate
- 2:47 PM Ticket #15288 (ChimeraX PyPi broken without nogui module) closed by
- wontfix: We are coming off the idea of releasing PyPi packages and warming up …
- 1:40 PM Ticket #20288 (Device loss detected in Present()) created by
- […]
- 12:04 PM Ticket #20284 (Attempt to retrieve context when no valid context) closed by
- nonchimerax: Linux remote display error.
- 12:03 PM Ticket #20282 (glClear: invalid framebuffer operation on statusbar expose) closed by
- duplicate: Qt bug where makeCurrent() leaves an OpenGL error. Worked around a …
- 12:01 PM Ticket #20278 (Crash in QDockWidget::event() in Qt 6.9.2) closed by
- duplicate: Was deleting a QDockWidget. Maybe this happens when dragging a docked …
- 10:42 AM Ticket #20287 (Colors from PDB) closed by
- not a bug: Hi Tanvi, PDB format files do not contain color information. If you …
- 4:38 AM Ticket #20287 (Colors from PDB) created by
- […] P53 STRONG INTERACTIONS .pdb
- 2:22 AM Ticket #20286 (Crash in QAccessible::uniqueId) created by
- […]
- 2:22 AM Ticket #20285 (Crash in QAccessible::uniqueId) created by
- […]
- 12:36 AM Ticket #19955 (cannot change Animations output file type) closed by
- fixed: You should be able to save a file in any format the movie bundle …
May 6, 2026:
- 8:43 PM Ticket #20284 (Attempt to retrieve context when no valid context) created by
- […]
- 7:11 PM Ticket #20280 (Animation roll transition) closed by
- fixed: OK, I made it so that the actions rotate around …
- 6:53 PM Ticket #19967 (Animation precession action seems wrong) closed by
- fixed: I believe the precession action is correct now.
- 6:41 PM Ticket #20283 (Improve mutation set automatic structure association) created by
- Currently when a mutation set is used to color or select associated …
- 6:40 PM Ticket #20282 (glClear: invalid framebuffer operation on statusbar expose) created by
- […]
- 6:30 PM Ticket #20281 (Mutation heatmap error dragging box after deleting residues) created by
- […]
- 5:40 PM ChangeLog edited by
- (diff)
- 5:38 PM ChangeLog edited by
- (diff)
- 4:42 PM Ticket #20280 (Animation roll transition) created by
- The "roll" transition seems to roll around the world X/Y/Z axis, which …
- 3:40 PM Ticket #20276 (Deleting scene leaves it in timeline) closed by
- fixed: Should be fixed in tomorrow's build.
- 3:37 PM Ticket #20279 (Mutations gui does not list scores when session restored) closed by
- fixed: Fixed in 1.12 and 1.13. The mutation scores gui was not notified when …
- 3:26 PM Ticket #20273 (Session restore failure: No module named 'chimerax.animations.trajectory') closed by
- fixed
- 3:25 PM Ticket #19230 (Debug Log output written by Animations tool) closed by
- fixed: Sorry this was left open Tom, Animations hasn't spammed the log with …
- 3:23 PM Ticket #19893 (Animations timeline contents not saved in session) closed by
- fixed: Fixed long ago.
- 2:45 PM Ticket #20279 (Mutations gui does not list scores when session restored) created by
- […]
- 2:12 PM Ticket #20248 (UnicodeDecodeError reading Mol2 file) closed by
- fixed: Now also tries utf-16 and utf-32
- 2:06 PM Ticket #20278 (Crash in QDockWidget::event() in Qt 6.9.2) created by
- […]
- 12:57 PM Ticket #20275 (glClear: invalid framebuffer operation on statusbar expose) closed by
- duplicate: Qt bug where QOpenGLContext.makeCurrent() sets the OpenGL error state. …
- 12:42 PM Ticket #20277 (ProNA3D TypeError: Logger.error() got an unexpected keyword argument 'log') created by
- […] fold_9obd.zip
- 9:59 AM Ticket #20274 ('restore camera' not in session options) closed by
- fixed: In today's daily build, the earlier import errors do not occur, which …
May 5, 2026:
- 6:54 PM Ticket #7231 (update MUSCLE seq align webservice from version 3 to 5) closed by
- fixed: Was implemented about a year and a half ago.
- 6:48 PM Ticket #9968 (Save image of sequence/alignment) closed by
- fixed: In tomorrow's daily build there will be a "Save Image..." entry in the …
- 5:45 PM Ticket #20276 (Deleting scene leaves it in timeline) created by
- […]
- 4:13 PM Ticket #20275 (glClear: invalid framebuffer operation on statusbar expose) created by
- […]
- 2:25 PM Ticket #20271 (Crash in swap_buffers exposing status line during SideView ...) closed by
- duplicate: Qt crash. Yesterday I changed status line code to not respond to …
- 2:16 PM Ticket #20274 ('restore camera' not in session options) created by
- […] cinco-anim.cxs
- 2:01 PM Ticket #20272 (Testing bug submission) closed by
- not a bug
- 1:58 PM Ticket #20273 (Session restore failure: No module named 'chimerax.animations.trajectory') created by
- […] anim-sess.cxs
- 1:57 PM Ticket #20272 (Testing bug submission) created by
- […]
- 1:32 PM Dev2026-05-11 created by
- 1:27 PM DeveloperMeetings edited by
- (diff)
- 1:27 PM DeveloperMeetings edited by
- (diff)
- 1:23 PM Ticket #20268 (glDrawBuffer: invalid operation) closed by
- nonchimerax: This error is caused by a DCV failure, Desktop Cloud Visualization, …
- 12:24 PM Ticket #20271 (Crash in swap_buffers exposing status line during SideView ...) created by
- […]
- 8:39 AM Ticket #20269 (UniProt != structure) closed by
- not a bug: User apparently thinks that opening a UniProt entry will show a structure.
- 8:25 AM ChangeLog edited by
- (diff)
- 8:23 AM ChangeLog edited by
- (diff)
- 4:48 AM Ticket #20270 (ArtiaX: Cannot interpret '<StringDtype(na_value=nan)>' as a data type) created by
- […] Screenshot 2026-05-05 134708.png
- 1:36 AM Ticket #20269 (UniProt != structure) created by
- […]
May 4, 2026:
- 6:04 PM Ticket #20268 (glDrawBuffer: invalid operation) created by
- […]
- 4:09 PM Dev2026-05-4 edited by
- (diff)
- 2:20 PM Ticket #20266 (Crash in swap_buffers, Qt dispatched status line expose event during ...) closed by
- can't reproduce: ChimeraX was trying to draw the SideView and during the OpenGL …
- 1:29 PM Dev2026-05-4 edited by
- (diff)
- 1:20 PM Dev2026-05-4 edited by
- (diff)
- 1:18 PM DeveloperMeetings edited by
- (diff)
- 1:17 PM Ticket #20264 (glClear: invalid framebuffer operation on statusbar expose) closed by
- duplicate: This is a but in the Qt window toolkit that ChimeraX uses. The bug …
- 1:14 PM Ticket #20261 (Crash destroying QFileDialog during garbage collection while exiting) closed by
- can't reproduce: Qt, the bane of ChimeraX. We have seen bad things happen when garbage …
- 12:53 PM Ticket #20267 (glClear: invalid framebuffer operation on status line expose event) created by
- On Apr 21, 2026, at 8:15 PM, Beckman, Joseph S wrote: I wanted to …
- 12:45 PM Ticket #20266 (Crash in swap_buffers, Qt dispatched status line expose event during ...) created by
- […]
- 11:58 AM Ticket #20263 (PySide6.QtWidgets.QFileDialog.getSaveFileName(): unsupported keyword ...) closed by
- duplicate
- 11:57 AM Dev2026-05-4 edited by
- (diff)
- 11:12 AM Ticket #20260 (Can't find tool instance for window) closed by
- can't reproduce: Pretty weird series of commands in the log.
- 10:52 AM Ticket #20258 (Bitcoin investment) closed by
- invalid
- 10:50 AM Ticket #20257 (Proofpoint Essentials - Quarantine Digest) closed by
- not a bug
- 8:42 AM ChangeLog edited by
- (diff)
- 2:21 AM Ticket #20265 (Crash in swap_buffers exposing SideView during Mac wakeup, Qt 6.10) created by
- […]
May 3, 2026:
- 4:40 PM Ticket #20264 (glClear: invalid framebuffer operation on statusbar expose) created by
- […]
- 3:00 PM Ticket #20263 (PySide6.QtWidgets.QFileDialog.getSaveFileName(): unsupported keyword ...) created by
- […]
- 1:45 AM Ticket #20262 (ISOLDE restraints: cannot access local variable 'template_us' where it ...) created by
- […]
- 1:38 AM Ticket #20261 (Crash destroying QFileDialog during garbage collection while exiting) created by
- […]
May 2, 2026:
- 7:20 PM Ticket #20260 (Can't find tool instance for window) created by
- […]
- 6:00 PM Ticket #20259 (Save MD analysis GUI info in sessions) created by
- […]
- 10:49 AM Ticket #20258 (Bitcoin investment) created by
- […]
May 1, 2026:
Apr 30, 2026:
- 7:29 PM Ticket #20251 (PAE matrix partially displayed) closed by
- not a bug: This model archive file only includes PAE values between chains A and …
- 7:17 PM Ticket #20256 (AlphaFold prediction on Google Colab fails due to failed tensorflow import) closed by
- fixed: Fixed. The problem is that importing tensorflow fails after colabfold …
- 6:44 PM ChangeLog edited by
- (diff)
- 6:25 PM Ticket #20255 (Crash in QDockWidget::event() in Qt 6.9.2) closed by
- duplicate: Qt 6.9 crash probably dragging tool with mouse.
- 6:18 PM Ticket #20256 (AlphaFold prediction on Google Colab fails due to failed tensorflow import) created by
- […] colab_error.txt
- 6:06 PM Ticket #20250 (Crash in Qt platform-specific code in NSMenuBarPresentationInstance) closed by
- can't reproduce: No clue what caused this. Appears to have crashed at startup. User …
- 4:48 PM 2026-4-30 edited by
- (diff)
- 3:50 PM 2026-4-30 edited by
- (diff)
- 3:38 PM Ticket #20233 (DLL load failed: the specified module could not be found) closed by
- can't reproduce: Make a duplicate of #20217
- 3:38 PM Ticket #20232 (DLL load failed: access denied) closed by
- can't reproduce: Make a duplicate of #20217
- 3:13 PM Ticket #20254 (DLL load failed: An Application Control policy has blocked this file) closed by
- duplicate: Duplicate of #20217
- 3:13 PM Ticket #20236 (DLL load failed: An Application Control policy has blocked this file) closed by
- duplicate: Duplicate of #20217
- 3:09 PM Ticket #20244 (DLL load failed: An Application Control policy has blocked this file) closed by
- duplicate: Duplicate of #20217
- 10:12 AM Ticket #20247 (Parsing BlastProtein results failed: HTTP Error 415: Unsupported Media Type) closed by
- duplicate: This should be fixed in new daily builds. Duplicate of #20204
- 9:53 AM Ticket #20255 (Crash in QDockWidget::event() in Qt 6.9.2) created by
- […]
- 9:30 AM Ticket #20254 (DLL load failed: An Application Control policy has blocked this file) created by
- […]
- 4:18 AM Ticket #20253 (CliX: problem when command has trailing spaces) created by
- […]
- 12:12 AM Ticket #20252 (Log not visible) created by
- […]
Apr 29, 2026:
- 11:27 PM Ticket #20251 (PAE matrix partially displayed) created by
- […]
- 10:14 PM Ticket #20204 (Parsing BlastProtein results failed: HTTP Error 415: Unsupported Media Type) closed by
- fixed: This should be fixed in new daily builds. On the client side, we were …
- 8:51 PM Ticket #20250 (Crash in Qt platform-specific code in NSMenuBarPresentationInstance) created by
- […]
- 7:16 PM Ticket #20249 (Crash restoring windows at login) created by
- […]
- 4:33 PM Ticket #20248 (UnicodeDecodeError reading Mol2 file) created by
- […]
- 1:56 PM Ticket #20247 (Parsing BlastProtein results failed: HTTP Error 415: Unsupported Media Type) created by
- […]
- 1:24 PM Ticket #17551 (RFE: label residues with color-coded grid of column prevalences from ...) closed by
- fixed: Profile Grid labels available through "sequence grid label" command or …
- 12:32 PM Ticket #20246 (glClear: invalid framebuffer operation on statusbar expose) created by
- […]
- 11:37 AM Ticket #20245 (Crash in QAccessible::uniqueId) closed by
- duplicate: Unfortunate to see this recurring crash in Qt 6.10. It has been …
- 11:23 AM Ticket #20243 (Crash in QDockWidget::event() in Qt 6.9.2) closed by
- duplicate: Mac Qt 6.9 crash probably dragging a ChimeraX tool window, believed …
- 11:13 AM Ticket #20241 (glBufferData: out of memory) closed by
- nonchimerax: glBufferData() appears to have failed at ChimeraX startup with "out of …
- 11:10 AM Ticket #20240 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) closed by
- duplicate: Qt 6.9 crash, believe fixed in 6.10.
- 11:08 AM Ticket #20239 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) closed by
- duplicate: Qt 6.9 crash, believe fixed in Qt 6.10.
- 11:05 AM Ticket #20237 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) closed by
- duplicate: Qt 6.9 bug, believe fixed in 6.10.
- 10:47 AM Ticket #20245 (Crash in QAccessible::uniqueId) created by
- […]
- 10:21 AM Ticket #20242 (Error in atom spec evaluation) closed by
- can't reproduce: Would need a test code to tinker with this complicated code
- 10:00 AM Ticket #20235 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) closed by
- duplicate: Was exiting; PySide6
- 10:00 AM Ticket #20244 (DLL load failed: An Application Control policy has blocked this file) created by
- […]
- 8:58 AM Ticket #20243 (Crash in QDockWidget::event() in Qt 6.9.2) created by
- […]
- 8:45 AM Ticket #20242 (Error in atom spec evaluation) created by
- […]
- 4:45 AM Ticket #20241 (glBufferData: out of memory) created by
- […]
- 3:02 AM Ticket #20240 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) created by
- […]
- 2:26 AM Ticket #20239 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) created by
- […]
- 1:01 AM Ticket #20238 (No module named 'chimerax.boltz') created by
- […]
- 12:57 AM Ticket #20237 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) created by
- […]
Apr 28, 2026:
- 11:01 PM Ticket #20236 (DLL load failed: An Application Control policy has blocked this file) created by
- […]
- 12:35 PM Ticket #20235 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) created by
- […]
- 10:42 AM Dev2026-05-4 edited by
- (diff)
- 10:41 AM 2026-4-30 created by
- 10:40 AM Dev2026-05-4 created by
- 10:40 AM 2026-4-23 edited by
- (diff)
- 10:38 AM DeveloperMeetings edited by
- (diff)
- 10:30 AM Ticket #20234 (Crash in QDockWidget::event() in Qt 6.9.2) closed by
- duplicate: Qt crash dragging tool window. Believe fixed in Qt 6.10.
- 9:26 AM Ticket #20230 (Minimize: Residue template with the same override level already exists) closed by
- can't reproduce
- 6:26 AM Ticket #20234 (Crash in QDockWidget::event() in Qt 6.9.2) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
