Timeline



May 10, 2026:

3:16 PM Ticket #20299 (glClear: invalid framebuffer operation on statusbar expose) created by guvenerzt@…
[…]
9:08 AM Ticket #20298 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]

May 9, 2026:

6:28 AM Ticket #20297 (Cannot save movie frames) created by chimerax-bug-report@…
[…]

May 8, 2026:

4:04 PM Ticket #20296 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
3:19 PM Ticket #20295 (Make Boltz and OpenFold installs work with Nvidia Blackwell GPUs) created by Tom Goddard
ChimeraX installs PyTorch 2.7.1 based on cuda 12.6 when installing …
1:10 PM Ticket #20283 (Improve mutation set automatic structure association) closed by Tom Goddard
fixed: Fixed. Made structure chains with identical sequences automatically …
11:51 AM Ticket #20293 (Crash in QOpenGLContext.swapBuffers() after expose event) closed by Tom Goddard
duplicate
11:50 AM Ticket #20292 (Crash in PySide in Shiboken::Errors::storePythonOverrideErrorOrPrint ...) closed by Tom Goddard
nonchimerax: ChimeraX is still using PyQt due to PySide6 bugs such as this.
11:46 AM Ticket #20291 (Crash moving tool window, Mac multiple displays) closed by Tom Goddard
duplicate: This ChimeraX crash was in the Qt window toolkit moving a ChimeraX …
11:40 AM Ticket #20290 (Crash in swap_buffers after expose event) closed by Tom Goddard
duplicate: ChimeraX 1.12 has work-around of not handling status line expose …
9:29 AM Ticket #20294 (Crash trying to render GUI with hundreds of sequence viewers) created by chimerax-bug-report@…
[…]
6:09 AM Ticket #20293 (Crash in QOpenGLContext.swapBuffers() after expose event) created by chimerax-bug-report@…
[…]
1:05 AM Ticket #20292 (Crash in PySide in Shiboken::Errors::storePythonOverrideErrorOrPrint ...) created by chimerax-bug-report@…
[…]
1:02 AM Ticket #20291 (Crash moving tool window, Mac multiple displays) created by P.Yu@…
[…]
12:28 AM Ticket #20290 (Crash in swap_buffers after expose event) created by chimerax-bug-report@…
[…]

May 7, 2026:

5:47 PM Ticket #20288 (Device loss detected in Present()) closed by Tom Goddard
nonchimerax: Windows sometimes loses the OpenGL context and logs "Device loss …
4:23 PM Ticket #20281 (Mutation heatmap error dragging box after deleting residues) closed by Tom Goddard
fixed: Fixed. Made code detect residue or atom deletion and restore colors …
3:50 PM Ticket #20285 (Crash in QAccessible::uniqueId) closed by Tom Goddard
duplicate: The opened PDB 6KSR and it crashes after the open completes in …
3:31 PM Ticket #20289 (All black windows) created by rjrich@…
[…]
3:29 PM Ticket #20286 (Crash in QAccessible::uniqueId) closed by Tom Goddard
duplicate: Same reporter, same crash as #20285
2:47 PM Ticket #20069 (ffmpeg: Permission Denied) closed by Zach Pearson
duplicate
2:47 PM Ticket #15288 (ChimeraX PyPi broken without nogui module) closed by Zach Pearson
wontfix: We are coming off the idea of releasing PyPi packages and warming up …
1:40 PM Ticket #20288 (Device loss detected in Present()) created by chimerax-bug-report@…
[…]
12:04 PM Ticket #20284 (Attempt to retrieve context when no valid context) closed by Tom Goddard
nonchimerax: Linux remote display error.
12:03 PM Ticket #20282 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
duplicate: Qt bug where makeCurrent() leaves an OpenGL error. Worked around a …
12:01 PM Ticket #20278 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Was deleting a QDockWidget. Maybe this happens when dragging a docked …
10:42 AM Ticket #20287 (Colors from PDB) closed by Eric Pettersen
not a bug: Hi Tanvi, PDB format files do not contain color information. If you …
4:38 AM Ticket #20287 (Colors from PDB) created by tanvibalaji15@…
[…] P53 STRONG INTERACTIONS .pdb
2:22 AM Ticket #20286 (Crash in QAccessible::uniqueId) created by chimerax-bug-report@…
[…]
2:22 AM Ticket #20285 (Crash in QAccessible::uniqueId) created by chimerax-bug-report@…
[…]
12:36 AM Ticket #19955 (cannot change Animations output file type) closed by Zach Pearson
fixed: You should be able to save a file in any format the movie bundle …

May 6, 2026:

8:43 PM Ticket #20284 (Attempt to retrieve context when no valid context) created by chimerax-bug-report@…
[…]
7:11 PM Ticket #20280 (Animation roll transition) closed by Zach Pearson
fixed: OK, I made it so that the actions rotate around …
6:53 PM Ticket #19967 (Animation precession action seems wrong) closed by Zach Pearson
fixed: I believe the precession action is correct now.
6:41 PM Ticket #20283 (Improve mutation set automatic structure association) created by Tom Goddard
Currently when a mutation set is used to color or select associated …
6:40 PM Ticket #20282 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
6:30 PM Ticket #20281 (Mutation heatmap error dragging box after deleting residues) created by goddard@…
[…]
5:40 PM ChangeLog edited by Eric Pettersen
(diff)
5:38 PM ChangeLog edited by Eric Pettersen
(diff)
4:42 PM Ticket #20280 (Animation roll transition) created by Eric Pettersen
The "roll" transition seems to roll around the world X/Y/Z axis, which …
3:40 PM Ticket #20276 (Deleting scene leaves it in timeline) closed by Zach Pearson
fixed: Should be fixed in tomorrow's build.
3:37 PM Ticket #20279 (Mutations gui does not list scores when session restored) closed by Tom Goddard
fixed: Fixed in 1.12 and 1.13. The mutation scores gui was not notified when …
3:26 PM Ticket #20273 (Session restore failure: No module named 'chimerax.animations.trajectory') closed by Zach Pearson
fixed
3:25 PM Ticket #19230 (Debug Log output written by Animations tool) closed by Zach Pearson
fixed: Sorry this was left open Tom, Animations hasn't spammed the log with …
3:23 PM Ticket #19893 (Animations timeline contents not saved in session) closed by Zach Pearson
fixed: Fixed long ago.
2:45 PM Ticket #20279 (Mutations gui does not list scores when session restored) created by goddard@…
[…]
2:12 PM Ticket #20248 (UnicodeDecodeError reading Mol2 file) closed by Eric Pettersen
fixed: Now also tries utf-16 and utf-32
2:06 PM Ticket #20278 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
12:57 PM Ticket #20275 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
duplicate: Qt bug where QOpenGLContext.makeCurrent() sets the OpenGL error state. …
12:42 PM Ticket #20277 (ProNA3D TypeError: Logger.error() got an unexpected keyword argument 'log') created by goddard@…
[…] fold_9obd.zip
9:59 AM Ticket #20274 ('restore camera' not in session options) closed by Eric Pettersen
fixed: In today's daily build, the earlier import errors do not occur, which …

May 5, 2026:

6:54 PM Ticket #7231 (update MUSCLE seq align webservice from version 3 to 5) closed by Eric Pettersen
fixed: Was implemented about a year and a half ago.
6:48 PM Ticket #9968 (Save image of sequence/alignment) closed by Eric Pettersen
fixed: In tomorrow's daily build there will be a "Save Image..." entry in the …
5:45 PM Ticket #20276 (Deleting scene leaves it in timeline) created by Elaine Meng
[…]
4:13 PM Ticket #20275 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
2:25 PM Ticket #20271 (Crash in swap_buffers exposing status line during SideView ...) closed by Tom Goddard
duplicate: Qt crash. Yesterday I changed status line code to not respond to …
2:16 PM Ticket #20274 ('restore camera' not in session options) created by Elaine Meng
[…] cinco-anim.cxs
2:01 PM Ticket #20272 (Testing bug submission) closed by Eric Pettersen
not a bug
1:58 PM Ticket #20273 (Session restore failure: No module named 'chimerax.animations.trajectory') created by Elaine Meng
[…] anim-sess.cxs
1:57 PM Ticket #20272 (Testing bug submission) created by Eric Pettersen
[…]
1:32 PM Dev2026-05-11 created by Tom Goddard
1:27 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:27 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:23 PM Ticket #20268 (glDrawBuffer: invalid operation) closed by Tom Goddard
nonchimerax: This error is caused by a DCV failure, Desktop Cloud Visualization, …
12:24 PM Ticket #20271 (Crash in swap_buffers exposing status line during SideView ...) created by chimerax-bug-report@…
[…]
8:39 AM Ticket #20269 (UniProt != structure) closed by Eric Pettersen
not a bug: User apparently thinks that opening a UniProt entry will show a structure.
8:25 AM ChangeLog edited by Eric Pettersen
(diff)
8:23 AM ChangeLog edited by Eric Pettersen
(diff)
4:48 AM Ticket #20270 (ArtiaX: Cannot interpret '<StringDtype(na_value=nan)>' as a data type) created by matthew.chee@…
[…] Screenshot 2026-05-05 134708.png
1:36 AM Ticket #20269 (UniProt != structure) created by chimerax-bug-report@…
[…]

May 4, 2026:

6:04 PM Ticket #20268 (glDrawBuffer: invalid operation) created by brandon.scott@…
[…]
4:09 PM Dev2026-05-4 edited by Tom Goddard
(diff)
2:20 PM Ticket #20266 (Crash in swap_buffers, Qt dispatched status line expose event during ...) closed by Tom Goddard
can't reproduce: ChimeraX was trying to draw the SideView and during the OpenGL …
1:29 PM Dev2026-05-4 edited by Tom Goddard
(diff)
1:20 PM Dev2026-05-4 edited by Tom Goddard
(diff)
1:18 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:17 PM Ticket #20264 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
duplicate: This is a but in the Qt window toolkit that ChimeraX uses. The bug …
1:14 PM Ticket #20261 (Crash destroying QFileDialog during garbage collection while exiting) closed by Tom Goddard
can't reproduce: Qt, the bane of ChimeraX. We have seen bad things happen when garbage …
12:53 PM Ticket #20267 (glClear: invalid framebuffer operation on status line expose event) created by joe.beckman@…
On Apr 21, 2026, at 8:15 PM, Beckman, Joseph S wrote: I wanted to …
12:45 PM Ticket #20266 (Crash in swap_buffers, Qt dispatched status line expose event during ...) created by chimerax-bug-report@…
[…]
11:58 AM Ticket #20263 (PySide6.QtWidgets.QFileDialog.getSaveFileName(): unsupported keyword ...) closed by Eric Pettersen
duplicate
11:57 AM Dev2026-05-4 edited by Tom Goddard
(diff)
11:12 AM Ticket #20260 (Can't find tool instance for window) closed by Eric Pettersen
can't reproduce: Pretty weird series of commands in the log.
10:52 AM Ticket #20258 (Bitcoin investment) closed by Eric Pettersen
invalid
10:50 AM Ticket #20257 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
8:42 AM ChangeLog edited by Elaine Meng
(diff)
2:21 AM Ticket #20265 (Crash in swap_buffers exposing SideView during Mac wakeup, Qt 6.10) created by chimerax-bug-report@…
[…]

May 3, 2026:

4:40 PM Ticket #20264 (glClear: invalid framebuffer operation on statusbar expose) created by wongi.yoo@…
[…]
3:00 PM Ticket #20263 (PySide6.QtWidgets.QFileDialog.getSaveFileName(): unsupported keyword ...) created by chimerax-bug-report@…
[…]
1:45 AM Ticket #20262 (ISOLDE restraints: cannot access local variable 'template_us' where it ...) created by chimerax-bug-report@…
[…]
1:38 AM Ticket #20261 (Crash destroying QFileDialog during garbage collection while exiting) created by chimerax-bug-report@…
[…]

May 2, 2026:

7:20 PM Ticket #20260 (Can't find tool instance for window) created by chimerax-bug-report@…
[…]
6:00 PM Ticket #20259 (Save MD analysis GUI info in sessions) created by Zach Pearson
[…]
10:49 AM Ticket #20258 (Bitcoin investment) created by willaimsrobert510@…
[…]

May 1, 2026:

9:02 AM Ticket #20257 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]

Apr 30, 2026:

7:29 PM Ticket #20251 (PAE matrix partially displayed) closed by Tom Goddard
not a bug: This model archive file only includes PAE values between chains A and …
7:17 PM Ticket #20256 (AlphaFold prediction on Google Colab fails due to failed tensorflow import) closed by Tom Goddard
fixed: Fixed. The problem is that importing tensorflow fails after colabfold …
6:44 PM ChangeLog edited by Elaine Meng
(diff)
6:25 PM Ticket #20255 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Qt 6.9 crash probably dragging tool with mouse.
6:18 PM Ticket #20256 (AlphaFold prediction on Google Colab fails due to failed tensorflow import) created by goddard@…
[…] colab_error.txt
6:06 PM Ticket #20250 (Crash in Qt platform-specific code in NSMenuBarPresentationInstance) closed by Tom Goddard
can't reproduce: No clue what caused this. Appears to have crashed at startup. User …
4:48 PM 2026-4-30 edited by Greg Couch
(diff)
3:50 PM 2026-4-30 edited by Tom Ferrin
(diff)
3:38 PM Ticket #20233 (DLL load failed: the specified module could not be found) closed by Greg Couch
can't reproduce: Make a duplicate of
3:38 PM Ticket #20232 (DLL load failed: access denied) closed by Greg Couch
can't reproduce: Make a duplicate of
3:13 PM Ticket #20254 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:13 PM Ticket #20236 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:09 PM Ticket #20244 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
10:12 AM Ticket #20247 (Parsing BlastProtein results failed: HTTP Error 415: Unsupported Media Type) closed by Zach Pearson
duplicate: This should be fixed in new daily builds. Duplicate of #20204
9:53 AM Ticket #20255 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
9:30 AM Ticket #20254 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
4:18 AM Ticket #20253 (CliX: problem when command has trailing spaces) created by chimerax-bug-report@…
[…]
12:12 AM Ticket #20252 (Log not visible) created by marta.vidagany@…
[…]

Apr 29, 2026:

11:27 PM Ticket #20251 (PAE matrix partially displayed) created by ndempsey@…
[…]
10:14 PM Ticket #20204 (Parsing BlastProtein results failed: HTTP Error 415: Unsupported Media Type) closed by Zach Pearson
fixed: This should be fixed in new daily builds. On the client side, we were …
8:51 PM Ticket #20250 (Crash in Qt platform-specific code in NSMenuBarPresentationInstance) created by chimerax-bug-report@…
[…]
7:16 PM Ticket #20249 (Crash restoring windows at login) created by hyoka2829@…
[…]
4:33 PM Ticket #20248 (UnicodeDecodeError reading Mol2 file) created by chimerax-bug-report@…
[…]
1:56 PM Ticket #20247 (Parsing BlastProtein results failed: HTTP Error 415: Unsupported Media Type) created by tplybrand@…
[…]
1:24 PM Ticket #17551 (RFE: label residues with color-coded grid of column prevalences from ...) closed by Eric Pettersen
fixed: Profile Grid labels available through "sequence grid label" command or …
12:32 PM Ticket #20246 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
11:37 AM Ticket #20245 (Crash in QAccessible::uniqueId) closed by Tom Goddard
duplicate: Unfortunate to see this recurring crash in Qt 6.10. It has been …
11:23 AM Ticket #20243 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Mac Qt 6.9 crash probably dragging a ChimeraX tool window, believed …
11:13 AM Ticket #20241 (glBufferData: out of memory) closed by Tom Goddard
nonchimerax: glBufferData() appears to have failed at ChimeraX startup with "out of …
11:10 AM Ticket #20240 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) closed by Tom Goddard
duplicate: Qt 6.9 crash, believe fixed in 6.10.
11:08 AM Ticket #20239 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) closed by Tom Goddard
duplicate: Qt 6.9 crash, believe fixed in Qt 6.10.
11:05 AM Ticket #20237 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) closed by Tom Goddard
duplicate: Qt 6.9 bug, believe fixed in 6.10.
10:47 AM Ticket #20245 (Crash in QAccessible::uniqueId) created by chimerax-bug-report@…
[…]
10:21 AM Ticket #20242 (Error in atom spec evaluation) closed by Eric Pettersen
can't reproduce: Would need a test code to tinker with this complicated code
10:00 AM Ticket #20235 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) closed by Eric Pettersen
duplicate: Was exiting; PySide6
10:00 AM Ticket #20244 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
8:58 AM Ticket #20243 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
8:45 AM Ticket #20242 (Error in atom spec evaluation) created by chimerax-bug-report@…
[…]
4:45 AM Ticket #20241 (glBufferData: out of memory) created by chimerax-bug-report@…
[…]
3:02 AM Ticket #20240 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) created by chimerax-bug-report@…
[…]
2:26 AM Ticket #20239 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) created by chimerax-bug-report@…
[…]
1:01 AM Ticket #20238 (No module named 'chimerax.boltz') created by chimerax-bug-report@…
[…]
12:57 AM Ticket #20237 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) created by chimerax-bug-report@…
[…]

Apr 28, 2026:

11:01 PM Ticket #20236 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
12:35 PM Ticket #20235 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) created by chimerax-bug-report@…
[…]
10:42 AM Dev2026-05-4 edited by Tom Goddard
(diff)
10:41 AM 2026-4-30 created by Tom Goddard
10:40 AM Dev2026-05-4 created by Tom Goddard
10:40 AM 2026-4-23 edited by Tom Goddard
(diff)
10:38 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:30 AM Ticket #20234 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Qt crash dragging tool window. Believe fixed in Qt 6.10.
9:26 AM Ticket #20230 (Minimize: Residue template with the same override level already exists) closed by Eric Pettersen
can't reproduce
6:26 AM Ticket #20234 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]

Apr 27, 2026:

9:39 PM Ticket #20233 (DLL load failed: the specified module could not be found) created by chimerax-bug-report@…
[…]
8:25 PM Ticket #20232 (DLL load failed: access denied) created by chimerax-bug-report@…
[…]
6:39 PM Ticket #20231 (Session save failure if Clipper ZoneMask in scene) created by chimerax-bug-report@…
[…]
4:39 PM Dev2026-03-27 edited by Tom Goddard
(diff)
3:30 PM Ticket #20228 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:30 PM Ticket #20224 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:29 PM Ticket #20223 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:29 PM Ticket #20222 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:28 PM Ticket #20220 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:27 PM Ticket #20184 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:27 PM Ticket #20183 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:27 PM Ticket #20172 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:26 PM Ticket #20060 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of
3:15 PM Ticket #20226 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
duplicate: Duplicate of . Wait for response in that ticket.
3:11 PM Ticket #20227 (DLL load failed: An Application Control policy has blocked this file) closed by Greg Couch
can't reproduce: Works for us.
1:39 PM Ticket #20230 (Minimize: Residue template with the same override level already exists) created by chimerax-bug-report@…
[…]
1:13 PM Ticket #20229 (vop maximum: ArrayMemoryError) closed by Tom Goddard
limitation: User created 11 GB and 6 GB maps on a Windows machine with 16 GB of …
1:11 PM Dev2026-03-27 edited by Tom Goddard
(diff)
1:03 PM Ticket #20225 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: This ChimeraX crash is a bug in the Qt window toolkit. Is is fixed in …
12:53 PM Ticket #20221 (Problem restoring blob outline box) closed by Tom Goddard
wontfix: The user opened a session where linked volume files were missing. …
12:50 PM Ticket #20218 (Various ribbon errors) closed by Tom Goddard
can't reproduce: The user opened a command script and in nucleotides make_molecule() it …

Apr 26, 2026:

11:58 PM Ticket #20229 (vop maximum: ArrayMemoryError) created by chimerax-bug-report@…
[…]
11:42 PM Ticket #20228 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
11:38 PM Ticket #20227 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
11:03 PM Ticket #20226 (DLL load failed: An Application Control policy has blocked this file) created by mmajidalihakim223@…
[…] Screenshot 2026-04-27 110101.png
10:07 PM Ticket #20225 (Crash on Mac waking from sleep) created by andysen@…
[…]
7:28 PM Ticket #20224 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
10:01 AM Ticket #20223 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
2:58 AM Ticket #20222 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
2:26 AM Ticket #20221 (Problem restoring blob outline box) created by chimerax-bug-report@…
[…]

Apr 25, 2026:

7:07 PM Ticket #20220 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
5:16 AM Ticket #20219 (SEQCROW: error reading XYZ file) created by chimerax-bug-report@…
[…]

Apr 24, 2026:

11:22 PM Ticket #20218 (Various ribbon errors) created by chimerax-bug-report@…
[…]
5:44 PM Ticket #20216 (Crash redrawing status line after expose event) closed by Tom Goddard
duplicate: This ChimeraX crash is caused by a Qt window toolkit bug. We believe …
5:41 PM Ticket #20215 (Crash moving window) closed by Tom Goddard
duplicate: This ChimeraX crash is due to Qt window toolkit bug and happens …
9:53 AM Ticket #20213 (Crash handling event) closed by Eric Pettersen
can't reproduce: Possibly a crash in the Chromium backend.
9:48 AM Ticket #20212 (Cannot restore new session in old ChimeraX) closed by Eric Pettersen
limitation
9:45 AM Ticket #20217 (DLL load failed: An Application Control policy has blocked this file) created by mmajidalihakim223@…
[…] fold_final_polyvalnt_constrct_model_0.cif
8:59 AM Ticket #20216 (Crash redrawing status line after expose event) created by stuti.sharma@…
[…]
8:05 AM Ticket #20215 (Crash moving window) created by charles.midgett@…
[…]

Apr 23, 2026:

7:49 PM Ticket #20214 (Clipper: CCP4MTZfile: open_read - File missing or corrupted) created by chimerax-bug-report@…
[…]
5:25 PM Ticket #20213 (Crash handling event) created by chimerax-bug-report@…
[…]
5:21 PM Ticket #20209 (Error reading TIFF file) closed by Tom Goddard
nonchimerax: Probably bad or truncated OME tiff data files.
5:17 PM Ticket #20212 (Cannot restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
10:31 AM Ticket #20211 (ChimeraX download mirror is down) closed by Eric Pettersen
fixed
7:39 AM Ticket #20211 (ChimeraX download mirror is down) created by rodriguezaraya@…
[…]

Apr 22, 2026:

10:04 PM Ticket #20210 (ArtiaX: Cannot interpret '<StringDtype(na_value=nan)>' as a data type) created by xfang93@…
[…]
5:06 PM 2026-4-23 edited by Tom Goddard
(diff)
5:06 PM DeveloperMeetings edited by Tom Goddard
(diff)
2:05 PM Ticket #20209 (Error reading TIFF file) created by chimerax-bug-report@…
[…]
1:31 PM ChangeLog edited by Eric Pettersen
(diff)
12:21 PM Ticket #20208 (Crash moving window between screens) closed by Tom Goddard
duplicate: The ChimeraX bug report panel said what we know about this crash: …
11:01 AM Ticket #20207 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) closed by Tom Goddard
can't reproduce: Also was in QWindowPrivate::emitScreenChangedRecursion(). I think …
10:59 AM Ticket #20206 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
duplicate: Common Qt 6.9 bug, believe fixed (or suppressed) in Qt 6.10.
10:58 AM Ticket #20205 (OpenGL errors/crash in PySide) closed by Tom Goddard
duplicate: Crashed in PySide. The OpenGL errors are common ones seen in Qt 6.9, …
10:54 AM Ticket #20202 (Crash in QObject::event) closed by Tom Goddard
can't reproduce: Appears it crashed at startup since the Log is empty. And it looks …
10:51 AM Ticket #20201 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Qt 6.9 bug, probably dragging Tool window.
10:50 AM Ticket #20200 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) closed by Tom Goddard
duplicate: Commonly reported ChimeraX error in PySide 6. Appears ChimeraX is …
9:02 AM Ticket #20208 (Crash moving window between screens) created by chouhan@…
[…]
8:30 AM Ticket #20207 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) created by chimerax-bug-report@…
[…]
7:37 AM Ticket #20206 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
6:33 AM Ticket #20205 (OpenGL errors/crash in PySide) created by chimerax-bug-report@…
[…]
2:55 AM Ticket #20204 (Parsing BlastProtein results failed: HTTP Error 415: Unsupported Media Type) created by nodolczyk@…
[…]

Apr 21, 2026:

7:02 PM Ticket #20203 (Add menu entry Predicted Aligned Error Plot) closed by Tom Goddard
fixed: Done. The window title still says AlphaFold Error Plot but I think …
6:48 PM Ticket #20203 (Add menu entry Predicted Aligned Error Plot) created by Tom Goddard
Currently menu entry Tools / Structure Prediction / AlphaFold Error …
6:22 PM Ticket #20202 (Crash in QObject::event) created by chimerax-bug-report@…
[…]
5:20 PM Ticket #20201 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
4:43 PM Ticket #20200 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) created by chimerax-bug-report@…
[…]
4:07 PM Ticket #7359 (Implement Match→Align) closed by Eric Pettersen
fixed: A Match→Align tool will be in tomorrow's daily build.
3:33 PM Ticket #20199 (Profile Grid, PAE plot, and mutation heatmaps change size when deiconfied) created by goddard@…
[…]
10:46 AM Ticket #20198 (lighting full: glTexImage2D: out of memory) closed by Tom Goddard
limitation: The error says that OpenGL graphics ran out of memory. It was trying …
10:42 AM Ticket #20197 (Crash in swap_buffers exposing status line during Mac wakeup, macOS 26) closed by Tom Goddard
duplicate: Qt bug appears to be fixed in Qt 6.10.
10:40 AM Ticket #20196 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
duplicate: Fixed in Qt 6.10
10:40 AM Ticket #20195 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
duplicate: Qt bug in macOS 26 appears to be fixed by Qt 6.10 in ChimeraX daily build.
10:37 AM Ticket #20194 (glClear: invalid framebuffer operation on statusbar expose) closed by Tom Goddard
duplicate: This problem with OpenGL graphics errors in macOS 26 is a bug in the …
10:34 AM 2026-4-23 edited by Tom Goddard
(diff)
10:34 AM Dev2026-03-27 created by Tom Goddard
10:33 AM 2026-4-23 created by Tom Goddard
10:32 AM 2026-4-16 edited by Tom Goddard
(diff)
10:29 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:29 AM Ticket #20198 (lighting full: glTexImage2D: out of memory) created by andysen@…
[…]
7:35 AM Ticket #20197 (Crash in swap_buffers exposing status line during Mac wakeup, macOS 26) created by chimerax-bug-report@…
[…]
6:44 AM Ticket #20196 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
6:43 AM Ticket #20195 (glClear: invalid framebuffer operation on statusbar expose) created by chimerax-bug-report@…
[…]
6:14 AM Ticket #20194 (glClear: invalid framebuffer operation on statusbar expose) created by iva.sucec.is@…
[…]

Apr 20, 2026:

4:04 PM Dev2026-03-20 edited by Tom Goddard
(diff)
11:42 AM Ticket #20193 (Crash in glBufferData) closed by Tom Goddard
can't reproduce: Crashed in the OpenGL graphics driver in glBufferData while trying to …
11:38 AM Ticket #20187 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Possibly dragging a tool window, a known Qt 6.9 crash.
11:37 AM Ticket #20185 (Crash destroying QDockWidget during garbage collection) closed by Tom Goddard
can't reproduce: Crash was in a mouse button release handler and destroying a …
11:34 AM Ticket #20192 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
11:34 AM Ticket #20190 (phenix.voyager.emplace_local: error: unrecognized arguments) closed by Eric Pettersen
nonchimerax: Hi Shawn, Thanks for reporting this problem. You need a newer …
11:28 AM Ticket #20189 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
11:28 AM Ticket #20188 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
5:51 AM Ticket #20193 (Crash in glBufferData) created by horvath.peter.3@…
[…]
5:02 AM Ticket #20192 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]

Apr 18, 2026:

6:56 PM Ticket #20191 (Extract allele frequency from fetched uniprot variants info) created by Tom Goddard
Would be interesting to see allele frequency and minor allele …
5:25 PM Ticket #20190 (phenix.voyager.emplace_local: error: unrecognized arguments) created by srr131@…
[…]
5:02 PM Ticket #20189 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
5:03 AM Ticket #20188 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]
1:45 AM Ticket #20187 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]

Apr 17, 2026:

5:22 PM Ticket #20186 (Make a mutation score manager GUI) closed by Tom Goddard
fixed: Initial version done. The GUI has a list of the mutation set name …
5:16 PM Ticket #20186 (Make a mutation score manager GUI) created by Tom Goddard
Currently opening a mutation score data set (.csv file) shows a …
9:46 AM Ticket #20185 (Crash destroying QDockWidget during garbage collection) created by chimerax-bug-report@…
[…]
9:13 AM Ticket #20182 (Minimize: Could not find typename for atom) closed by Eric Pettersen
can't reproduce: Possible duplicate of #19923
1:25 AM Ticket #20184 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]

Apr 16, 2026:

11:06 PM Ticket #20183 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
10:40 PM Ticket #20182 (Minimize: Could not find typename for atom) created by chimerax-bug-report@…
[…]
4:32 PM Ticket #20180 (Crash in swap_buffers exposing status line during Mac wakeup) closed by Tom Goddard
duplicate: Qt 6.9 bug crashing in swap_buffers on status line expose. Seems …
4:31 PM Ticket #20179 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Qt bug, possibly dragging a tool window.
4:30 PM Ticket #20178 (Crash in redraw during volume histogram change in glBufferSubData) closed by Tom Goddard
limitation: Crash in OpenGL graphics showing a 1024 by 1024 by 320 map, probably a …
4:28 PM Ticket #20177 (Crash in redraw during volume histogram change in glBufferSubData) closed by Tom Goddard
limitation: OpenGL crash probably out of memory. User had many 1 Gbyte maps open …
4:26 PM Ticket #20176 ("sym" command: tflist is None) closed by Tom Goddard
fixed: Fixed. User tried to apply symmetry to an atomic model using an EMDB …
4:20 PM Ticket #20174 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) closed by Tom Goddard
duplicate: This crash was in PySide as seen by Shiboken and PySide in the crash …
4:08 PM Ticket #20171 (Crash in swap_buffers when status line exposed Mac Qt 6.9.2) closed by Tom Goddard
duplicate: Qt 6.9 bug. Crash in OpenGL swap_buffers.
2:56 PM Ticket #20166 (Ubuntu: Can't install ISOLDE: "not compatible: wrong platform") closed by Greg Couch
fixed: The installation should work now. I've fixed the symptom, but not the …
12:38 PM Ticket #20181 (An issue with using ChimeraX) created by Huihui.Mu@…
[…] …
8:51 AM Ticket #20180 (Crash in swap_buffers exposing status line during Mac wakeup) created by chimerax-bug-report@…
[…]
7:49 AM Ticket #20179 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
7:48 AM Ticket #20178 (Crash in redraw during volume histogram change in glBufferSubData) created by chimerax-bug-report@…
[…]
7:39 AM Ticket #20177 (Crash in redraw during volume histogram change in glBufferSubData) created by chimerax-bug-report@…
[…]
5:47 AM Ticket #20176 ("sym" command: tflist is None) created by chimerax-bug-report@…
[…]
12:34 AM Ticket #20175 (SEQCROW: open ORCA .out: operands could not be broadcast together) created by tangyihan@…
[…] QM-XTB_optTS.out

Apr 15, 2026:

11:48 PM Ticket #20174 (Crash deleting a QDockWidget involving QWindowContainer::parentWasChanged) created by chimerax-bug-report@…
[…]
7:04 PM Ticket #20173 (Cannot load Python) created by chimerax-bug-report@…
[…]
4:50 PM Ticket #20158 (Bad model table in Boltzgen mmCIF file) closed by Eric Pettersen
fixed: Issue a warning and ignore the table if bad indexing. Fix: …
2:51 PM Ticket #20169 (Volume colors outside range inverted) closed by Tom Goddard
duplicate: This was fixed in October 2025 in the current ChimeraX 1.11. …
1:51 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
1:51 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
1:11 PM Ticket #20172 (DLL load failed: An Application Control policy has blocked this file) created by chimerax-bug-report@…
[…]
12:48 PM Ticket #20171 (Crash in swap_buffers when status line exposed Mac Qt 6.9.2) created by chimerax-bug-report@…
[…]
9:54 AM ChangeLog edited by Eric Pettersen
(diff)
9:45 AM Ticket #20170 (KVFinder on old MacOS) closed by Eric Pettersen
limitation
5:18 AM Ticket #20170 (KVFinder on old MacOS) created by chimerax-bug-report@…
[…]
3:52 AM Ticket #20169 (Volume colors outside range inverted) created by z.campbell@…
[…] color_bug_image.png

Apr 14, 2026:

2:54 PM Ticket #20167 (mutationscores heatmap: UFuncOutputCastingError) closed by Tom Goddard
fixed: Fixed. Willow sent me the .csv file and it has scores named …
1:22 PM Dev2026-03-20 created by Tom Goddard
1:22 PM 2026-4-16 created by Tom Goddard
1:21 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:19 PM Ticket #20165 (Crash on Mac waking from sleep) closed by Tom Goddard
duplicate: This ChimeraX crash is caused by a bug in the Qt window toolkit. It …
1:17 PM Ticket #20163 (Crash in swap_buffers exposing status line during Mac wakeup, macOS 26) closed by Tom Goddard
duplicate: This crash is caused by a bug in the Qt window toolkit. It appears to …
9:57 AM Ticket #1633 (Depict thermal ellipsoids) closed by Eric Pettersen
fixed: The ability to depict thermal ellipsoids is in the current production …
9:47 AM Ticket #20168 (Ability to split structure into residues) created by michael.moos@…
So that per-residue values (e.g. ring fill color) can be applied in a …
8:56 AM Ticket #20167 (mutationscores heatmap: UFuncOutputCastingError) created by willow.coyote-maestas@…
[…]
8:51 AM Ticket #20164 (Crash in QWindowContainer::parentWasChanged) closed by Eric Pettersen
duplicate
7:58 AM Ticket #20166 (Ubuntu: Can't install ISOLDE: "not compatible: wrong platform") created by jianghai.zhu@…
[…] Screenshot from 2026-04-14 10-53-36.png
7:29 AM Ticket #20165 (Crash on Mac waking from sleep) created by a.fasemire@…
[…]

Apr 13, 2026:

7:50 PM Ticket #20164 (Crash in QWindowContainer::parentWasChanged) created by chimerax-bug-report@…
[…]
6:46 PM Ticket #20163 (Crash in swap_buffers exposing status line during Mac wakeup, macOS 26) created by jing.16.liu@…
[…]
5:50 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
5:50 PM phenix-4-9-26 edited by Eric Pettersen
(diff)
5:49 PM Features edited by Eric Pettersen
(diff)
5:10 PM Dev2026-03-13 edited by Tom Goddard
(diff)
5:03 PM Ticket #20162 (openfold predict: No such option: --seed) closed by Tom Goddard
fixed: Fixed in April 13, ChimeraX. Also need to delete ~/openfold and …
4:57 PM Ticket #20162 (openfold predict: No such option: --seed) created by goddard@…
[…]
4:12 PM Dev2026-03-13 edited by Tom Goddard
(diff)
3:32 PM Dev2026-03-13 edited by Tom Goddard
(diff)
2:59 PM Dev2026-03-13 edited by Tom Goddard
(diff)
12:38 PM Ticket #20160 ("Move labels" mouse mode moves hidden labels) closed by Tom Goddard
fixed: Fixed. Thanks for catching this. The move label mouse mode code was …
12:21 PM Ticket #20161 (Crash moving window between screens) closed by Tom Goddard
duplicate: Probable crash dragging tool window in Qt 6.9. Appears fixed in Qt 6.10.
12:11 PM Ticket #20155 (Crash moving window between screens) closed by Tom Goddard
duplicate: This seems to be fixed in ChimeraX 1.11 by a Qt window toolkit update. …
10:50 AM Ticket #20159 (Crash processing mouse event) closed by Eric Pettersen
can't reproduce
10:42 AM Ticket #20157 (Proofpoint Essentials - Quarantine Digest) closed by Eric Pettersen
not a bug
7:32 AM Ticket #20161 (Crash moving window between screens) created by chimerax-bug-report@…
[…]
2:33 AM Ticket #20160 ("Move labels" mouse mode moves hidden labels) created by Tristan Croll
[…]

Apr 12, 2026:

3:11 PM Ticket #20159 (Crash processing mouse event) created by chimerax-bug-report@…
[…]
9:58 AM Ticket #20158 (Bad model table in Boltzgen mmCIF file) created by chimerax-bug-report@…
[…]

Apr 11, 2026:

1:02 AM Ticket #20157 (Proofpoint Essentials - Quarantine Digest) created by do-not-reply@…
[…]

Apr 10, 2026:

6:47 PM Ticket #20156 (Crash starting ChimeraX during login(?)) created by hyoka2829@…
[…]
12:07 PM Ticket #20155 (Crash moving window between screens) created by psrini87@…
[…]
9:53 AM Ticket #20154 (Crash in QDockWidget::event() in Qt 6.9.2) closed by Tom Goddard
duplicate: Qt 6.9 crash dragging tool window. Seems fixed in Qt 6.10.
9:49 AM Ticket #20152 (Boltz → RunPod) closed by Tom Goddard
duplicate
9:47 AM Ticket #20151 (Boltz → RunPod) closed by Tom Goddard
not a bug: The Boltz server option was added after the ChimeraX 1.11.1 release so …
9:11 AM Ticket #20153 (Crash during drag and drop) closed by Eric Pettersen
can't reproduce
2:53 AM Ticket #20154 (Crash in QDockWidget::event() in Qt 6.9.2) created by chimerax-bug-report@…
[…]
12:58 AM Ticket #20153 (Crash during drag and drop) created by chimerax-bug-report@…
[…]
Note: See TracTimeline for information about the timeline view.